CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044064	Yersinia pseudotuberculosis strain FDAARGOS_665 chromosome, complete genome	4 crisprs	csa3,DinG,DEDDh,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	0	6	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044064_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044064_1

816629-816712

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGCGCAGGCAGCTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044064_1

>merge|NZ_CP044064|1|816629-816712|CRISPRCasFinder
GTTCACTGCCGCGCAGGCAGCTTAGAAAACTATCATTTCCTGCAATTCTTCTTTACTCAGGTTCACTGCCGCACAGGCAGCTTA

>NZ_CP044064|1|1|816629-816712|CRISPRCasFinder
GTTCACTGCCGCGCAGGCAGCTTA	GAAAACTATCATTTCCTGCAATTCTTCTTTACTCAG
GTTCACTGCCGCACAGGCAGCTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044064.1\|WP_012304405.1\|816719_817574_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP044064.1\|WP_038824814.1\|799751_800333_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375042
NZ_CP044064.1\|WP_072080757.1\|809334_815349_-\|alpha-2-macroglobulin	unknown	unknown	gnl\|CDD\|225248
NZ_CP044064.1\|WP_002210302.1\|825326_826355_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP044064.1\|WP_050124571.1\|806456_806759_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675
NZ_CP044064.1\|WP_038824813.1\|800681_802598_-\|autotransporter-adhesin-YapC	unknown	unknown	gnl\|CDD\|273608
NZ_CP044064.1\|WP_012105539.1\|803685_803937_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044064.1\|WP_038824811.1\|804544_804946_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP044064.1\|WP_072080758.1\|819455_821402_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|226471
NZ_CP044064.1\|WP_002209751.1\|803407_803647_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044064.1\|WP_012105531.1\|826378_827512_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP044064.1\|WP_011191920.1\|821695_822682_+\|inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
NZ_CP044064.1\|WP_002210300.1\|822789_823719_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380623
NZ_CP044064.1\|WP_012105532.1\|823767_825315_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP044064.1\|WP_071990082.1\|827543_829514_+\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281
NZ_CP044064.1\|WP_150352118.1\|806914_809227_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|273954
NZ_CP044064.1\|WP_011191915.1\|803960_804440_+\|Hcp-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
NZ_CP044064.1\|WP_050124572.1\|829666_830587_+\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_CP044064.1\|WP_012304403.1\|817915_819442_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP044064.1\|WP_038824816.1\|798615_799737_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406

Protein	Function_ID	Function_description	E-value
NZ_CP044064.1\|WP_012304405.1\|816719_817574_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.12958e-69
NZ_CP044064.1\|WP_038824814.1\|799751_800333_-\|hypothetical-protein	gnl\|CDD\|375042	pfam17194, AbiEi_3_N, Transcriptional regulator, AbiEi antitoxin N-terminal domain. AbiEi_3 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	3.52372e-28
NZ_CP044064.1\|WP_002210302.1\|825326_826355_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	8.15893e-97
NZ_CP044064.1\|WP_050124571.1\|806456_806759_+\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	6.35239e-37
NZ_CP044064.1\|WP_038824813.1\|800681_802598_-\|autotransporter-adhesin-YapC	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	9.07237e-105
NZ_CP044064.1\|WP_038824811.1\|804544_804946_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	9.33157e-40
NZ_CP044064.1\|WP_072080758.1\|819455_821402_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|226471	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism].	0
NZ_CP044064.1\|WP_072080757.1\|809334_815349_-\|alpha-2-macroglobulin	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP044064.1\|WP_012105531.1\|826378_827512_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.53135e-70
NZ_CP044064.1\|WP_011191920.1\|821695_822682_+\|inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	8.04969e-171
NZ_CP044064.1\|WP_002210300.1\|822789_823719_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380623	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins. The periplasmic binding protein (PBP) IbpA mediates the uptake of myo-inositol by an ABC transporter that consists of the PBP IbpA, the transmembrane permease IatP, and the ABC IatA. IbpA shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge.	4.31227e-120
NZ_CP044064.1\|WP_012105532.1\|823767_825315_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP044064.1\|WP_071990082.1\|827543_829514_+\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0
NZ_CP044064.1\|WP_150352118.1\|806914_809227_-\|penicillin-binding-protein-1C	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP044064.1\|WP_011191915.1\|803960_804440_+\|Hcp-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	6.03614e-76
NZ_CP044064.1\|WP_050124572.1\|829666_830587_+\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	5.0247e-164
NZ_CP044064.1\|WP_012304403.1\|817915_819442_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP044064.1\|WP_038824816.1\|798615_799737_+\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	1.65738e-170

>NZ_CP044064.1|WP_072080757.1|809334_815349_-|alpha-2-macroglobulin
MLCCLVFKGLLSMDLLRFLLISPFALIKGLYRLSAYLLRLVGRLLRPVVGNLNWRAPQWMTKTANGLHCAFNRSEQWVAKHPKGISAAIVLLMAAASATFYGYHWYLNRPQPIEPAPMVYQETSIRVSAPRTVNYQAQKPEAQPLSLNFMHSAAPITAMGQVVDQGISLTPAIEGEWKWATERTLVFTPKKAWPMGANYQITIDAEKLLAPQIKLNQTELNFTTPAFAYQLEKAEYYQDPQEAQKRSTIFHVQFNAPVDVASFEKQILLGLVEGKSKSEKKLNFSVVYDEKKLNAWIHSQPLMPMDKGGSVHLSINKGVNASVAATPTTQAQNKWVSVPNLYSLAVNSINATLVESDNNNGERALIIAISDAVKDKEIKNAVKAWLLPQHNFQAKESAKTSTDFYPWDMDDIDDNLLQQSTPLALTLNEAEQEYQPIFSFKFDAPSYRTLLIEVNNSLTSVGGYKMPEKIYQIVRVPDYPKTLRFMSQGSLLSMQGDKQISVAARNMTGMKLDIKRVIPSQLQHIVSFKSSEYSSAHFNRLSDEYFTEHFQYQTALNNDNPGEINYQGVDLSRYLANNPSARRGVFLLTLSAWDPEKRDNQQHSEEDYDEDQEWVGDSRFVVITDLGIITKQSQDRSRDVFVQSIHSGLPTADAKVSVVAKNGVVLLSQITDSKGHVHFPALDAFKNERQPVMFLVEKEGDVSFLPTRATYDRNLDFSRFDIDGEETPSDPRTLSSYLFSDRGVYRPGDRFNIGLITRTANWATALDGVPLRAEIRDPRDTLMSTLPITLDSSGFNELSYTTGENSPTGEWNVYLYLVGKNNETSMLLGHTTVNVKEFEPDRLKVQLQLTPERQQGWVKPQELQANINVQNLFGTPAQERRVTSRLILRPMYPSFAPFPDYLFYENRHNSDGFETELEEQTTDLQGMATIPLDLKSYADATYQLQLLSEAFEAGGGRSVAATARVLVSPYDSLVGVKADGDLSYINRDAVRKLNIIAVDPSLNKIALPDLSLSLIEQKYISVLTKQDSGVYKYQSRLKEQLVSEQPLKISPTGTDFTLVTQQPGDFILVVKDSQGQVLNRISYTVAGNANLTRSLDRNTELKLKLNQAEYLQGEEIEIAINAPYAGSGLITIEKDKVYSWQWFHSDTTSSVQRIRIPPAMEGNGYINVQFVRDVNSDEIFMSPLSYGVMPFKISTKARQAAIELASPSVIKPGEVLPIKVTTDSPQRVVVFAVDEGILQVARYRLKDPLDYFFRKRELSVQSAQILDLILPEFSKLMALTSAPGGDAGEGLDLHLNPFKRKQDKPVAYWSGITEVNGETTFNYPVPDYFNGKIRVMAISATPDRIGKVQTSTTVRDNFILTPNVPAMVAPGDEFDVTVGVSNNLQGLKGKAVDITVRLTPPPQLEVVGEAQHSLSLAEKRETLVSFRLRARSALGDAPLVFDASYGSQSSRRTVSTSVRPAMPFRTQSVMGRMEGNKHTVTNLRQMFDNYAQRQATASHSPLVLTQGLARYLADYPYYSSEQIVSRSIPLIMQSKHPEMDSALNQNEVRDQLKNMLRILSSRQNSTGAIGLWHASPTPDPFVTPYVVQFLLEAKSAGYSLPNDILEGANNALRLLAARPYDDLYSLRLRAFAVYLLTLQGEITTNTLASVQSTLQQLYPDSWQTDLSAIYLASSYRLLKMDDEANKLLQPTWKQLGKAYSKAWWTQNYFDPLVQDATRLYLITRHFPEKVSSIPPQALENMVLALRDEHYTTYSSAMSILALESYTSQVAAQQDTPETLQIIEISKSKGIDPNVISTLNGLFVQGDFTGEAKAIQFNNYASAPAWYVVNQSGYDLQPPKDAISNGLEISRSYTDEQGKPVTQVTLGQKVNVHLKIRANAKQGQNNLAIVDLLPGGFEVVQQTAPEPEFYDNQDDQDEETGSGWQSPLMVSGSSWYPDYSDIREDRVIIYGSASTDVKEFIYQIKSTNTGRFVVPPAYGEAMYDRNVQALSVGKGHILVVPPEAK
>NZ_CP044064.1|WP_150352118.1|806914_809227_-|penicillin-binding-protein-1C
MALFLLALLVIGFRLWPHPPLSQGLPLSTAYYDRHGTLLRLSLANDDRYRLWTPLEEISPLVIQGIQLHEDRGFYYHPGVNPISLLRGFWQSYVQGGRQQGGSTLTMQLARMHWHLNTRSPTGKLRQIARAIQLELSYSKHDILEAYLNYAPYGRNIESIAAASLIYFDKKPQQLTLPEALTLAVLPQSPSYRIDPTTGMLGSALTQARNRLFVRWQQTYPTDSSQMALFQLPLSLRQPEKMPYIAPHFIEQIRRQNQQLANTQSQVDTTLDANLQQLVEKQVEAFIRRNNSRGIHNAAVLLLDTRDMGVRALVGSANYYDREIQGQVNGTNAKRSPGSTLKPFIYALGLEQGILHPMTILKDVPSSFGAYAPENFDHRFLGPVTATDALNFSRNIPAVYVASRLRQPTLYQFLRLSGVTNMASENHYGLSLVLGGGEITLQELARLYAMLANRGTLHPIQMVQTDKTLPSIRLLSEAASFITLDMLRQHRRPGDTLAQSPTSLPVYWKTGTSWGFRDAWSAGIFGPYVLIVWEGNFAGKGNSAFVGADAAAPLFFNIIDSIQANYPALREPKHPWPPQLKRVAICLASGNLPTPWCQQQGKTWFIPGKSPIKVDTVYRPVVIDINSGQAACPPYDRSQTRTEVFEFWPSDLANVFAQAGLPKRQPPDRSHCKEGNTLASGNAPRITSPLRNTTYTLRQSQQSRDQIVFSATLDADSTTTYWFVDDIYLGSSTSKKSIDWHPTRSGQYRIRAIDDHGRADSRLIRVEKVD
>NZ_CP044064.1|WP_050124571.1|806456_806759_+|transcriptional-regulator
MDKQDWHPADILAGLKKRGTTMAALSRKSGLASSTLANTLLRPWPKGERLIAEVLELHPAEIWPSRYLKPKKSPAESVNPGRFRLLKRIIKTRDCCPTMV
>NZ_CP044064.1|WP_038824811.1|804544_804946_-|DUF1240-domain-containing-protein
MVKINRPLVGAFAILLFFLSFWGCWFSLSGYLAFFKLSDVIIFSWKVGFVIFAVPLLFYFSYLAFFSAIKNKPAIMNNKLANALAILAILGSIISLFSSAYISYSLTEYSYKSCPRSSWMSPNEYVKDIKLCP
>NZ_CP044064.1|WP_011191915.1|803960_804440_+|Hcp-family-type-VI-secretion-system-effector
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENERIDVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVY
>NZ_CP044064.1|WP_012105539.1|803685_803937_+|hypothetical-protein
MMKNNKNINKDEFSDKLAQQIKEMINNSQLGSVEILSVVMESIFSLFSETEGHLAEMKFIDSAGEDYRFILRLEVPPILERQH
>NZ_CP044064.1|WP_002209751.1|803407_803647_+|hypothetical-protein
MEKEKKTLFGHKTPAMMQLSEQLESSLHNSPLVPEEKLALIMKLCVLLFRENKTDAAEMKVSDGRILKLTLEKTSSVLH
>NZ_CP044064.1|WP_038824813.1|800681_802598_-|autotransporter-adhesin-YapC
MDKTLLAGAISLSLVTLPVQVLAFTPNVVGITVNDEVVIHGIQNVRDGGVINNGLVSDNAAITVTNGSSAGTANNTTVGDKGWLQITGALATGTIVNQGGLLDTKTAGTVIDSQINDGGHMTLGLNSQSKGYLNIAAGAELFVTNNDPYTSDVTTHNPALPANVMIENLNVAGLVEIGPSWKGTSIVPLPLSDVLGPVLVTRINNVTLQGGDINLMAYSAGGQFNRLEIENLSGQGNFAMTTQLASNTGDFITVSQQATGQFGITVQDSGKEPQSADNLALVHINRGDAQFRLLNTGGVVDLGVYQYGLYSQESNGSTDWYLATSTEELPGTTPNVTAPMLSSAAQGVLNMAAAPRHILNAELSTLRQRQGELKADAEGTVGVWARYLTDDSRLSDNKNIAFKNTLSGMEIGADKQLGLNRGNMLIGAFTSYSSSDVKSTHGANGDIRSYGGGVYLTYLDQSGFYVDTVLKANRFNNKMNTQETRGEYNQNALTTSVESGYQWPVYANLVLEPYGKVSYSRIGSADYTLSNGMVAEVAKADSVQGELGTVLAASYSINQMTIKPYIKLAITREFTKNNAVAINNIGFDNDFSGNVGKYGVGINATVANNTAIFAEVDYLNGSKIETPVTANIGFRLRF
>NZ_CP044064.1|WP_038824814.1|799751_800333_-|hypothetical-protein
MLNTDARQQLRKLLPLEMVATKQWLLDQGLSLHFLDNAVRSSTLLPLTAEVYCLLEARVSWQGVVASLQRMSEQPIHVGGLTALELAGLGHYLSKGAEQHIHLWSEAALPTWLNRVPLNAKFKWHGTHRLWPKMTMDDPRFLHEETWREELPPVTFSCPEKAIFETLVDVPKAISFEHADELMQGLHNLSPII
>NZ_CP044064.1|WP_038824816.1|798615_799737_+|cupin-domain-containing-protein
MAYQLNLNWPEFLEKYWQKQPVVLKNAFPNFIDPITPDELAGLAMEVEVDSRLVSHTNGRWQASNGPFEHFDNLGETGWSLLAQAVNHWHAPSAELVRPFRVLPDWRLDDLMISFSVPGGGVGPHIDQYDVFIIQGMGRRRWRVGDKLPLKQFCPHPALLHVEPFTPIIDEDLAPGDILYIPPGFPHDGITYETAFNYSVGFRGPNGRDLISSFADYVLENDLGGEHYSDPDLTCREHPGRVEDHELERLRGMMLNMINQPEDFKQWFGRFVTTPRHELDIAPAQPPYDQDEIVDALMEGAVLTRLGGLRVLRVGDNVFINSERLEMANAEAADALCRYTIIGKKELGEALQDPAFVTELTELINQGYWFFNE
>NZ_CP044064.1|WP_012304405.1|816719_817574_-|MurR/RpiR-family-transcriptional-regulator
MTTASNLSELQQQIRDRYDNLSKRLQQVSRYVLDNTNSVAFDTVAVIAERADVPPSTLIRFANAFDFSGFNEMKQLFRMNLVEETASYTDRARLFRAMESEAVPETPLGILQEFARSNAQALQQLAARTEPEMLQRAVELLAQADTIYVVGLRRSFSVAAYLTYALSHLECRPVQLHGLGGMLREQVNSIKARDIVVSISFSPYAEETVMVSEIAASAGARQIVITDSQISPLATFSDLCFVVKEAQVDAFRSQSATLCLVQSLVVALAYQQEDQAGAALAHRQ
>NZ_CP044064.1|WP_012304403.1|817915_819442_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
METVANFINGKCVFSCGNSITSGSPRAQTIFNSATGEPIRQVMMSTAQETEQAITAAQQAFASWSRQAPLKRARVMFRFKSLLEQHLDALAQLISEEHGKVYSDAVGELTRGLEVVEFACGIPHLQKGEHSANVGTGVDNHSLMQPLGVCVGITPFNFPAMVPMWMFPIALATGNTFVLKPSEKDPSLAVRLAQLLTDAGLPDGVFNVVQGDKTAVDVLLTDPRVQAVSFVGSTPIAEYIYQTASAHGKRCQALGGAKNHCILMPDADMDMAASAIMGAAYGAAGERCMALSVVLAVGDETADNLCARLEQQISTLRVGPGLAQEPENDMGPLISAPHRAKVLGYIDSGVAQKATLRIDGRGLKVAGHEQGYFVGPTLFDHVTPAMTIYQEEIFGPVLSVVRIADYRSAVDLINRHEYGNGTAIFTRDGGTARRFCEEVQVGMVGVNVPIPVPVAFHSFGGWKRSIFGPLNVHGNDGVRFYTRMKTITARWPEAQHDQGAAFSMPTLG
>NZ_CP044064.1|WP_072080758.1|819455_821402_+|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MSTVNMAMKTVRMTMAQALVRFLNQQYVAVDGQEVAFVHGVMTIFGHGNVLGIGQALEENPGHLQVHQGCNEQGMAHMAIGFAKQYRRQRIYAVSSSIGPGAANMVTAAATATANRIPLLLLPGDIYASRQPDPVLQQSEQYHDLSISTNDCFRPVSRYWDRINRPEQLMSAMLSAMRVLTDPADTGAVTLCLPQDVQGEAWDYPASFFERRVHRIERRPPDTRRLSDALSLIARKRRPLVVCGGGVRYSGAHEAFRAFVENAQLPFTETQAGKGALPSDHPLNLGGIGVTGGLAANRLAPQADLVIGIGTRLTDFTTGSKALFSHPEVAFLLLNVAEFDALKLDATALIADARVGLEALTEGLTGYRTAWQGDIIEAKAAWRDECQRLWSRTWRPDEVPEVAGHLDDSLQEYAEVLNTTLTQTRVLGLINQHIEDDAIVVGAAGSLPGDLQRLWQVKTADTYHLEYGYSCMGYEIAAAIGAKIAMPHQPVYAMVGDGSYMMLHSELHTAVQEGLKITVLLFDNAGFGCINNLQMGHGMSSFCTESRHRNHESGQLNGPLIRVDFAQNAESYGCRAWRVHDEPSLLAALAASRDHPGPVLLDIKVLPKSMTHDYASWWRTGDAQIARSPAVQQAAERTQMKVKRARQY
>NZ_CP044064.1|WP_011191920.1|821695_822682_+|inositol-2-dehydrogenase
MFNIALLGAGRIGQVHAANIAAHPETTLWSVVDPNQENAARLVSQYRTRQQSVNEAMADLNVHAVLIASATDTHADLIELAAKHGKTIFCEKPVHLDLARVRDCLKVVKEYGVPLFIGFNRRFDPQFRHLKNEVLAGRIGKPESLLIISRDPSPPPVEYVRVSGGMFRDMTIHDFDMARFIMGEEPVAVFAQGSNLVDPAIGAAGDIDTAFVVLKYASGAMATIVNSRRSAYGYDQRLELHGSQGLLCVGNILENQVQHFGQKGGTRALPEHFFLQRYQAAYAAEWEHFVAVLRGDVQPECGGEEGERALYLADKALESLHSQREISL
>NZ_CP044064.1|WP_002210300.1|822789_823719_+|sugar-ABC-transporter-substrate-binding-protein
MKKLILAALIVFTSGVAFAENEQIVFSTPNLAMPFEVHMQRTAVKTAKALGVKLQVLDGQGSSPKQVADLENAITRGAQGFIVSPNDINAISSAVEEIQQAKLPVVTLDRSVESEKKVPHFGANNYKGGEAIANYVKSMFPNGAEIVLLTGQPGSSSNIERTKGIRDSLKTGGDKYRIVVDQTGNWMRSEGMRIIESVLPSLPKPPQVILSANDDMALGAIEALQSHGMKPGEIMVTGFDAVPEALARVREGWMAVTADQRPGYAVTTAMNQLVANIRDQKAITGADFLPTMITKENLDQAERVSEAGK
>NZ_CP044064.1|WP_012105532.1|823767_825315_+|sugar-ABC-transporter-ATP-binding-protein
MSQPLLKITDMAKSFSGVWALSNVQLTVEQGEIHALLGENGAGKSTLLKALSGAQPQTHGEIWFNGEMLALDDSPVERQNKGIITIYQEVNLLPNMTVAENMFLGREPRRRQVFVDEKAVNQEAQAILDYLQLNVSPTTAVARLSIAQQQMVEIARALTLNAKLIVMDEPSAALSDSEVESLHRVVRELKGRGVSIIYVTHRLHEVFQLCDRFTVFQDGRYTGSDEVAGTNVEKIIRLMVGRDVVFNRRPASETHHQDQPIRLSVQGLCREKPPLDPHGVALKDISFHVHAGEVLGIAGLVGAGRTEVARCLFGAGAFTSGNFEIDGVPYQPRDPMFALEQGIALVPEDRKKEGAVQGLSIRDNLTLSSLAGLLQWRFFVNTRKEDQLIETYRLALQIKMVNSEQAVRKLSGGNQQKVILARCMALNPRILIVDEPTRGIDVGTKSEVHQVLFDMAKQGVAVIVISSDLPEVLAVSDRIITLSEGRVTGEIHGDDASEERLMTMMAINHNALNAA
>NZ_CP044064.1|WP_002210302.1|825326_826355_+|ABC-transporter-permease
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL
>NZ_CP044064.1|WP_012105531.1|826378_827512_+|Gfo/Idh/MocA-family-oxidoreductase
MKEVRIGLIGTGYIGKAHAIAYAQAPTVFELRGKLVREMVAEVSPALAAQRAQAFGFNRFTCDWRELVADPAIDVVDICSPNYLHKEMALAAIHHGKHVYAEKPLALNARDASEMAAAATRAGVKTLVGFNYIKNPSAKLAKEIIERGEIGEVIHFYGTHNEDYMADPNTPIHWHCLQATAGLGALGDLAAHIVSMAQYLVGEITQVCGDLKTVVVTRPASVGSSARVAVENEDQAHAMVRFVNGAQGVIEASRVACGRKMGLSYMITGTQGAISFTQERMAELKLYLHNDPVNRQGFRTLLVGPAHPEYAAFCMAAGHGIGFNDQKTVEVRDLIDGIAMDTPLWPDFAEGWKVSRILDAIALSHQDSRWVNVTDIV
>NZ_CP044064.1|WP_071990082.1|827543_829514_+|5-dehydro-2-deoxygluconokinase
MSVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGTHLSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGSTNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGADLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPLASEGWAALNKLIDRRDPHCRGVVILGFDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK
>NZ_CP044064.1|WP_050124572.1|829666_830587_+|myo-inosose-2-dehydratase
MRKTEADRHTTAVQLGINPLTWTNDDLPSLGAETSLETCLSEGKEAGFAGFELGNKFSREAGVLGPILEHHQLKLVSGWYSGRLLERSVEEEIVAVRSHLALLCELGAKVMVFAEVSGCIHGEQQTPVHLRPRFPPARWAEYGAKLTAFARYTQALGVQIAYHHHMGTVIESAQDIDNLMIHTGEEVGLLLDTGHLTFAGADPLAVAQRWIARINHVHCKDVRTSVLADVKNRKTSFLDAVLSGVFTVPGDGGVDYPPIMALLKQHGYQGWLVVEAEQDPNVAHPMTYARMGYHNLSRLAHNAGLI

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Crispr_ID: NZ_CP044064_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044064_2

1156275-1156353

Orphan

Consensus_repeat	Method
GCACTTACCCGAATCACTGACGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044064_2

>merge|NZ_CP044064|2|1156275-1156353|CRISPRCasFinder
GCACTTACCCGAATCACTGACGTGAGTCAGCTCATCGGGATTCGTTTGCTGCATGCACTTACCCGAATCACTGATGTGA

>NZ_CP044064|2|2|1156275-1156353|CRISPRCasFinder
GCACTTACCCGAATCACTGACGTGA	GTCAGCTCATCGGGATTCGTTTGCTGCAT
GCACTTACCCGAATCACTGATGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044064.1\|WP_002208788.1\|1144372_1145245_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182768
NZ_CP044064.1\|WP_002228016.1\|1165154_1165751_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|183335
NZ_CP044064.1\|WP_002208776.1\|1157230_1158217_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP044064.1\|WP_038824894.1\|1163231_1163996_-\|DNA-binding-transcriptional-repressor-DeoR	unknown	unknown	gnl\|CDD\|182644
NZ_CP044064.1\|WP_002208782.1\|1150866_1152864_+\|ligand-gated-channel-protein	unknown	unknown	gnl\|CDD\|184104
NZ_CP044064.1\|WP_011192035.1\|1160830_1162132_-\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NZ_CP044064.1\|WP_011192030.1\|1149818_1150607_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP044064.1\|WP_128888911.1\|1159195_1160425_+\|serine-type-D-Ala-D-Ala-carboxypeptidase	unknown	unknown	gnl\|CDD\|182189
NZ_CP044064.1\|WP_002208769.1\|1164225_1164897_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP044064.1\|WP_002215451.1\|1148739_1149822_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
NZ_CP044064.1\|WP_002208766.1\|1166907_1168596_-\|aspartate:alanine-antiporter	unknown	unknown	gnl\|CDD\|179905
NZ_CP044064.1\|WP_038825094.1\|1154047_1154698_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP044064.1\|WP_012304316.1\|1155183_1156251_+\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NZ_CP044064.1\|WP_002208791.1\|1141605_1142463_-\|deoxyribonuclease-IV	unknown	unknown	gnl\|CDD\|179214
NZ_CP044064.1\|WP_002208785.1\|1147299_1148445_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238559
NZ_CP044064.1\|WP_038825096.1\|1156409_1157234_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270315
NZ_CP044064.1\|WP_002215439.1\|1165759_1166575_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|226422
NZ_CP044064.1\|WP_038823895.1\|1142626_1143715_-\|YeiH-family-putative-sulfate-export-transporter	unknown	unknown	gnl\|CDD\|225411
NZ_CP044064.1\|WP_002208775.1\|1158213_1158885_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP044064.1\|WP_002208786.1\|1145502_1147014_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182767

Protein	Function_ID	Function_description	E-value
NZ_CP044064.1\|WP_002208788.1\|1144372_1145245_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182768	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP044064.1\|WP_002228016.1\|1165154_1165751_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|183335	PRK11837, PRK11837, undecaprenyl pyrophosphate phosphatase; Provisional.	1.62984e-119
NZ_CP044064.1\|WP_002208776.1\|1157230_1158217_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	1.07823e-160
NZ_CP044064.1\|WP_038824894.1\|1163231_1163996_-\|DNA-binding-transcriptional-repressor-DeoR	gnl\|CDD\|182644	PRK10681, PRK10681, DNA-binding transcriptional repressor DeoR; Provisional.	0
NZ_CP044064.1\|WP_002208782.1\|1150866_1152864_+\|ligand-gated-channel-protein	gnl\|CDD\|184104	PRK13513, PRK13513, ligand-gated channel protein.	0
NZ_CP044064.1\|WP_011192035.1\|1160830_1162132_-\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP044064.1\|WP_011192030.1\|1149818_1150607_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	2.04116e-89
NZ_CP044064.1\|WP_128888911.1\|1159195_1160425_+\|serine-type-D-Ala-D-Ala-carboxypeptidase	gnl\|CDD\|182189	PRK10001, PRK10001, serine-type D-Ala-D-Ala carboxypeptidase.	0
NZ_CP044064.1\|WP_002208769.1\|1164225_1164897_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	1.24217e-123
NZ_CP044064.1\|WP_002215451.1\|1148739_1149822_+\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	3.63747e-79
NZ_CP044064.1\|WP_002208766.1\|1166907_1168596_-\|aspartate:alanine-antiporter	gnl\|CDD\|179905	PRK04972, PRK04972, putative transporter; Provisional.	0
NZ_CP044064.1\|WP_038825094.1\|1154047_1154698_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.20543e-70
NZ_CP044064.1\|WP_012304316.1\|1155183_1156251_+\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	1.82191e-153
NZ_CP044064.1\|WP_002208791.1\|1141605_1142463_-\|deoxyribonuclease-IV	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	2.83086e-176
NZ_CP044064.1\|WP_002208785.1\|1147299_1148445_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238559	cd01139, TroA_f, Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	0
NZ_CP044064.1\|WP_038825096.1\|1156409_1157234_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	2.7814e-119
NZ_CP044064.1\|WP_002215439.1\|1165759_1166575_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|226422	COG3907, COG3907, PAP2 (acid phosphatase) superfamily protein [General function prediction only].	1.2301e-121
NZ_CP044064.1\|WP_038823895.1\|1142626_1143715_-\|YeiH-family-putative-sulfate-export-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	2.5722e-128
NZ_CP044064.1\|WP_002208775.1\|1158213_1158885_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	2.90591e-104
NZ_CP044064.1\|WP_002208786.1\|1145502_1147014_+\|amino-acid-permease	gnl\|CDD\|182767	PRK10836, PRK10836, lysine transporter; Provisional.	0

>NZ_CP044064.1|WP_012304316.1|1155183_1156251_+|isopenicillin-N-synthase-family-oxygenase
MGQQVLSHQSVSSQWLANQSATSTLPLLDLSLLSGSDTERQAFLTALRHAARDVGFFYLTGHGIDTSLLRQIQILSRQFFALSDEEKLSIAMIRSPHFRGYNRAASEFTRGQPDWREQFDIGAERTPLPQIAGAPSWTRLQGPNQWPTALPELKPVLLQWQEEMTRMSLRLLRAFALALDLDEQAFDALYGDKPNEHIKLIRYPGREATQSGQGVGAHKDSGFLSFLLQDTQRGLQVEVEEGQWIDAVPREGTFVVNIGELLELASNGYLRATVHRVETPPAGIDRLSIAFFLGARLDAVVPLYPLSAALAAEARGPASDPHNPLFRDVGLNYLKGRLRSHPDVAERYYSDALCP
>NZ_CP044064.1|WP_038825094.1|1154047_1154698_-|HAD-IB-family-hydrolase
MDLALFDLDETLISDDSTGLWIRWLVNEGLAPFELSEQEQTLMTQYYQGQLSMAGYMAATLSPLVGKHTAEVAGWVEHFIAHDILPRIYPQALEKLAWHRDRGDYIVIISASGEHLVTPIAKHFAADTALSIGVTVENDRYTGQTYGTLTYQKGKVDRLNQWLSASPQLNFKRSYGYSDSINDQPQLEYVDHAAVINPGAELIDLAVLHQWDIHHW
>NZ_CP044064.1|WP_002208782.1|1150866_1152864_+|ligand-gated-channel-protein
MAKVNQRFRKTHSAALVIAAVISSQGYAAEKTNTATPTDTMVVTASGFQQRIQDSAASISVVTREQIENKAYRDVTDALKDVPGVVITGGGSTSDISIRGMAAKYTLILVNGKRVDTRSTRPNSDGSGIEQGWLPPLAAIDRIEVVRGPMSSLYGSDAMGGVINIITRKVGKEWHGTVRADATLQEDSKSGDIFQTNAYASGPLIDGLLGLKVSGLLSHRSEDKIIDGYNQQRMRNGTATFTLTPDDNNEFDFDIGHYVQDRNSTPGRTLALNGTNSDTQYDRNNYAVTHNGYYDFGNSTSYIQRDETRNPSRQMKSVDNIFNTQTSFLLDNHTLILGGQYRYEELYDKGNQLPSASDLKKLTRWSWALFAEDEWQMTNDFALTGGIRMDQDQNYGTHWTPRLYGVWHLADQWTLKGGVSGGYRSPDLRQATDDWGQLSGGGKGGLPALILGNSNLKPERSISQEIGILWDDQEGMNASVTLFYTDFKDKITEVRNCDITTNTTGQCVFNGINYKFISDRINVDKAMTRGAEATFAWDINQAWSLATNYTFTQSEQKSGAFAGQPLNQMPKHMLNGTLNWKTTEDFATWIRANYRGKASEYLNRTSMGSRTPSYTFVDLGANYQLTKEVRLMGGVYNLLDKRVDIDVNDKVLDGRRYMVGASYDF
>NZ_CP044064.1|WP_011192030.1|1149818_1150607_+|ABC-transporter-ATP-binding-protein
MTAGLRIERFYAGYPKRPVIQNLNVPLLPRGKITVLLGPNGSGKSTLLRSLAGLNRAEGQLWLDGSDLMKMPFTQRAEKVVYLPQSLPAGVHLHVLESIIVAQRASGGRSNTRSEAQVMALLERLGIAHLALSYLDQLSGGQKQLVGLAQSLIRQPSLLLLDEPLSALDLNYQFHVMDLVRQETRQRNIVTVVVVHDINIALRHGDHVLMLQNGALIADGQPEEVITPQSLAKVYGVKGRIERCSQGTPQVLIDGLVTEPTM
>NZ_CP044064.1|WP_002215451.1|1148739_1149822_+|iron-ABC-transporter-permease
MSVTTEPMTKTHNPPDLSVMGRYQNIVRHRLLVMGVLVLAILGCLLLDFTMGPSGLTLSSLWQTLIDPASADAGTRVIVWDIRLPYALMAVVIGLSLGLAGAEMQTILNNPLASPFTLGVSSAAAFGAALAIVSGIGIPGVPDQWFISVNAFIFALFAALMLDGITRWTRVASSGVVLFGIALVFTFNALVSMMQFIASEDTLQGLVFWTMGSLARASWAKLGIMLAVFALMLPLSMMNSWKLTALRLGEDRAISFGIDVRRLRLGTLLRISMLSALAVAFVGPIGFIGLVAPHIARMIFGEDHRFYLPASALIGALVLSMASIASKNLIPGIIIPVGIVTSLVGVPFFLSIILRHRGNV
>NZ_CP044064.1|WP_002208785.1|1147299_1148445_+|ABC-transporter-substrate-binding-protein
MKCVSLKMAKGLTISLLFGWALMAGSSALAATVTDMAGRTVTIPAKVERILLGEGRLFYAVSLLEGNKPLDRIVGWQGDFRKLDPQTYAIYKAKFPQIDQIPLIGNTTADSISPEKVLTLNPDIAIFGLSGHGPGKGSELVKQLEKAGVPVVFVDFRNSPLKNTLPSMRLLGKALHREQQAENYINFYQDNVDKVTDITNKIPEDKKPSVFIELRAGASEECCGTAGKGNMGDFIDQAGGNNIAKNLLPGSLGTVNLEKVLAAKPDIYIASGGKSPGSDAPGVVLGAQVTPEQAQASLQKILGRKGINTLSAVNTGHSYAIWHNYYNSPYNVLAIQSFAKWFYPEQFADLDPKKTMDSLYSQFLAVEPSGTYWIEAKRELD
>NZ_CP044064.1|WP_002208786.1|1145502_1147014_+|amino-acid-permease
MTQQNTKIPAQQGAQRLRRELKSRHLAMIAIGGSIGTGLFVASGATVSQAGPGGALLSYALIGLMVYFLMTSLGELAAFMPVSGSFSTYGSKYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMNYWFPDAPGWIWSALFLGLMFLLNYISVKGFGEAEYWFSLIKVTTVVIFIIVGVMMITGIMKGGETAGWHNWTIGDAPFAGGFSAMIGVAMIVGFSFQGTELIGIAAGESKDPGKNIPKAIRKVFWRILLFYIFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQNAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLFTLASEGKAPRIFAKLSKGGVPRNALYATTVVAGLCFLSSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYMMQGRDLNDLPYQSGFFPLGPIFAFVLCLIITLGQNYQAFLQDRIDWYGVTATYIGIPLFLVIWFGYKLSRGTRVVKYQEMEFPKWRDESEEHQKPTSR
>NZ_CP044064.1|WP_002208788.1|1144372_1145245_+|LysR-family-transcriptional-regulator
MHITLRQLEVFTEVLKSGSTTQASVVLALSQSAVSAALADLEGQLGVQLFDRVGKRLVTNEHGRLLYPKALALLDQAIEIEQLFLHDLGALRIAASSTIGNYMLPGMIAKYRRDFPGTPLELNIGNSQDVIEAVADFRGDLGLIEGPCHMPELVTQNWLRDELVVFAAPDSPLCHKALTLVDLADADWILRERGSGTREVLDHLLLAQLPHFKLVMELGNSEAIKRAVRYGMGVSCLSRRVIADQLASGELVELNIPLPPLIRTLYLIHHRQKHISNALLRFLSYCQEEE
>NZ_CP044064.1|WP_038823895.1|1142626_1143715_-|YeiH-family-putative-sulfate-export-transporter
MATSQTKELPRPQLFTVMTRYIPGLVLTGVITGLALNVGDMPWFINMGLGALTLAILFGIIVGNTLYPWLQPVCSDGVVYAKQYLLRLGIILYGFRLTFQQVADVGAAGMVIDLLTLSSTFILACWLGKRVFGLDQQTVMLIGAGSSICGAAAIMATEPVLKADASKVAVAVATVVIFGTLAIFVYPWLYQLNLHYQWLPFSQETFGIFAGSTIHEVAQVVAAGHAIGPDAENAAVITKMIRVMMLAPFLLLLSAYLGRSRIKTSGEKREKSAITIPWFAVIFILMAGFNSLNLLPAVWVNHLITLDTILLAMAMAALGLTTHIGSIRQAGVKPLLLALLLFIWLLVGGTGINLFVQHIALV
>NZ_CP044064.1|WP_002208791.1|1141605_1142463_-|deoxyribonuclease-IV
MKFVGAHVSAAGGVDQAVIRAHELEATAFALFTKNQRQWRAAPLAEDVIEKFKLACEKYGYTSAQILPHDSYLINLGHPVTEALEKSREAFIDELVRCQQLGLSLLNFHPGSHLLQIDEDQCLARIAESINIALDATEGVTAVIENTAGQGSNLGFKFEHLAAIIERVEDKSRVGVCIDTCHAFAAGYDLRTEEDCEHTFAALGKIVGFQYLRGMHLNDAKSEFNSRVDRHHSLGEGNIGKTVFSYIMRDSRFDNIPLILETVNMDIWAEEIAWLKSQAEIEPSL
>NZ_CP044064.1|WP_038825096.1|1156409_1157234_+|ABC-transporter-substrate-binding-protein
MTKTPVSGLVRTALFAALASAFSLSAQAAEALRVAADPVPHAEILQFVQKLDPSLNLTIIEIPNGVNSNELLAHGDVDANYFQHLPYLHSQEQALGQKFVVAATVHIEPLGIYSHKYKNVAEVPDKGSVAVPNNVTNLSRALYLLQEQGLITLKPGFTDPAKQQATPKDIADNPKHLKILEIESPQIPRSLDDVDLAVINGNYALEAGLNPATDALGLEKAEGNPYANILVTTPTLENDPRVKQLAKDLQSQEVAKFITEKYAGSVIPVAGIQP
>NZ_CP044064.1|WP_002208776.1|1157230_1158217_+|methionine-ABC-transporter-ATP-binding-protein
MISIERLSKTYPQGGLPMVALEEVSLEIPTGSVFGIVGRSGAGKSTLIRCLNLLERPTSGRIQVDGRELTTLSDRELRLQRQNIGMIFQNFHLLHSRNVWDNIAVGLEIIGMPKAQRQQRVAELLDLVGLSDKAYAFPSQLSGGQKQRVGIARALAAKPSYLLSDEATSALDPETTASILALLSDINRQLGLTIVLITHELDVVKSICDNAALLETGRVVETGAIADLLSDPLSRLGRSLLPTCGPLSVSATPRAELTFFDTLAASPVLSALAQQHAVGVTLLGGGVEFIGGQRVGRLHVDFNRPEGGLNLAEVLQFLNDRGVRAELI
>NZ_CP044064.1|WP_002208775.1|1158213_1158885_+|ABC-transporter-permease
MKNGMSWQELLVLVANASGETIYMVMIATFFTVLIGLPLGVLLFVSRPAGVLPAPRLNTLIGALVNVGRSMPFVVLLIALIPITRWIIGTTLGSTAAIVPITLGAIPFFARVVEAALDEVDKGRVEAILSMGGSARHVIQKVLLPEALPALLAGITLTVVMLVGFSSMAGVIGGGGLGDLAIRYGYQRFNNEVMVATLVILVILVQGIQSLGDRWVRSLAHRR
>NZ_CP044064.1|WP_128888911.1|1159195_1160425_+|serine-type-D-Ala-D-Ala-carboxypeptidase
MQGYSGDLMMKYILPFKIKNFTFSAGLLLLALPAAYAVDDPAAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLVTVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFTFNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFSESEKLLTWGFRFYETVVPIKSTKPFVTEKVWLGDNSQVELGVAEDAAITIPKGQMKNLKASYTLNQTELRAPLAKHQVVGTIDFQLNGKTIEQRPLVVLNEVKEGGIFSRFWDYVMMKLNQWFGGIFG
>NZ_CP044064.1|WP_011192035.1|1160830_1162132_-|HAAAP-family-serine/threonine-permease
MDTTQTSTLASARKISSSTWRKSDTMWMLGLYGTAIGAGVLFLPINAGIGGLLPLIVMAIIAFPMTYYAHRGLCRFVLSGKNPGEDITEVVEEHFGVGAGKLITLLYFFAIYPILLVYSVAITNTVDSFITHQMHLPSPPRAILSLILIVGLMAIVRFGEQTIVKAMSILVFPFVAVLMMLAIYLIPNWSGAIFENVSMDGNGTGSGLWMTMWLIIPVMVFSFNHSPIISAFAVAKREEYGVDAEKKCSRILSFAHIMMVITVMFFVFSCVLSLSPADLMDAKNQNISILSYLANHFNTPVIAYMAPVIAFIAITKSFLGHYLGAREGFNGMVIKSLRSRGKTIEQNKLNRITALFMLVTTWAVATLNPSILGMIETLGGPIIAMLLFLMPMYAIHKVPAMRKYSGQISNVFVVLMGLIAISGILFNLSNLFN
>NZ_CP044064.1|WP_038824894.1|1163231_1163996_-|DNA-binding-transcriptional-repressor-DeoR
METRRAERINKLIQALKRSDKIHLKDAANLLRVSEMTIRRDLSAEPTSVILLGGYVVMDPKSNNANNYFVSDQQAKQVEEKRRIGQLAAQLIIENDTVFFDCGTTIPWIIDEIDEELAFTAICYSLNTFLALQDKPNCKVILCGGEFKPNNCIFTPLSQQSELDNICPNKAFISAAGVSIEYGTTCFNFDEILLKHRAMAKSQYKILVADHSKFGKIKPASIGTLAQFDALVTDRPPVAEFYLFFSQHSVKIYC
>NZ_CP044064.1|WP_002208769.1|1164225_1164897_-|deoxyribose-phosphate-aldolase
MTTNYAHYIDHTLLAMDATEAQIIKLCEEAKQHHFYAVCVNSGYVPVAAQQLAGSSVKVCSVIGFPLGAGLTAAKAFEAQAAINAGAQEIDMVINVGWLKSGKIADVKADIKAVRDNCAATPLKVILETCLLSDEQIVQVCEMCRELDVAFVKTSTGFSTGGAKEEHVKLMRATVGPVMGVKASGAVRDRATAETMIQAGATRIGTSSGVAIVSGQQAAASGY
>NZ_CP044064.1|WP_002228016.1|1165154_1165751_-|undecaprenyl-diphosphate-phosphatase
MNYFFFSMINATPASSPWMISFATFIARDLIMLIPILLIGLWLWGPKDTMDMQRTVVTKAAIALAFSMLSATCIGMLIPHDRPFVDGFGYAFMSHAPDSSFPSDHGTAIFTFALAFLFWHHLWSGVSLMFIAIAIAWSRIYLGVHWPFDMLGAFLLGIVGCLFAQLVWNLFGEIIASTTKRFYHMSFALPISKGWVRG
>NZ_CP044064.1|WP_002215439.1|1165759_1166575_-|phosphatase-PAP2-family-protein
MITVPLFATSASGHTVKISKTTRQASTGPSTLNNRSTVPTIKTISLYSLPLSFYFWQVFGLLLVGLLFLALSRSEQLDWLISNYWFDPVGQNFPWEHNKWLDLLNHRLLKMALIATAIAALLWGIYRRNGRLVTTALLFGLGPLVIGILKATSAHSCPWDLVEYGGKALNYVLMDTAPPGAGPGHCFPGGHASSGFAVMALFFLFYPERPRLAMLCWFAGIGLGMLMGFGQIMRGAHFLTHNLWAGWWVWLSQLAAFWIISGYYQRIKGTE
>NZ_CP044064.1|WP_002208766.1|1166907_1168596_-|aspartate:alanine-antiporter
MNINVANLLNGNYILLLFVVLALGLCLGKLRLGSIQLGNAIGVLVVSLLLGQQHFAINTEALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSAMILALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHTMANGSSLQQAQDNLSLGYALTYLIGLVSLILGARYLPKLQHQDLPTSAQQIARERGLDTDSQRKVYLPVIRAYRVGPELVAWADGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQVGDEISLVGYPDAHSRLDPSFRNGKEVFDRDLLDMRIVTEEIVVKNSNAVGKRLSHLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVLQVSGDARRVKSVAEKIGFISIHSQVTDLLAFCSFFILGLMIGLITFQFSNFSFGIGNAAGLLLAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGGGINSSLGAVGGQMLISGLIVSLVPVVICFVFGAYVLRMNRALLFGAIMGARTCAPAMDIISDTARSNIPALGYAGTYAIANVLLTLAGSLIVILWPGILG

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Crispr_ID: NZ_CP044064_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044064_3

2348593-2348800

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
TTTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR

3 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP044064_3

>merge|NZ_CP044064|3|2348593-2348800|CRISPRCasFinder,CRT,PILER-CR
TTTGATTATTGCCTGTGCGGCAGTGAACCGTCCCCTTTTTGCAGATCTGCAAATTAAAGTTTTCTAAGCTGCCTGTTCGGCAGTGAACCGTGATTGGCCACTTGGCTGAGAATGATGTCATTTCTAAGCTGCCTGTGCGGCAGTGAACTTATCGGGGTCGGTTGCATCACTAATGACATTTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP044064|3|3|2348593-2348800|CRISPRCasFinder
TTTGATTATTGCCTGTGCGGCAGTGAAC	CGTCCCCTTTTTGCAGATCTGCAAATTAAAGT
TTTCTAAGCTGCCTGTTCGGCAGTGAAC	CGTGATTGGCCACTTGGCTGAGAATGATGTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTATCGGGGTCGGTTGCATCACTAATGACATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP044064|3|1|2348593-2348800|CRT
TTTGATTATTGCCTGTGCGGCAGTGAAC	CGTCCCCTTTTTGCAGATCTGCAAATTAAAGT
TTTCTAAGCTGCCTGTTCGGCAGTGAAC	CGTGATTGGCCACTTGGCTGAGAATGATGTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTATCGGGGTCGGTTGCATCACTAATGACATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP044064|3|1|2348652-2348800|PILER-CR
TTTTCTAAGCTGCCTGTTCGGCAGTGAAC	CGTGATTGGCCACTTGGCTGAGAATGATGTC
ATTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTATCGGGGTCGGTTGCATCACTAATGACAT
TTTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044064.1\|WP_011192622.1\|2338046_2338550_+\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708
NZ_CP044064.1\|WP_002210201.1\|2360081_2361470_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NZ_CP044064.1\|WP_011192624.1\|2340222_2341227_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP044064.1\|WP_011192632.1\|2354455_2355511_-\|glycosidase	unknown	unknown	gnl\|CDD\|350124
NZ_CP044064.1\|WP_038824568.1\|2352253_2353369_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044064.1\|WP_002210199.1\|2357466_2358753_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP044064.1\|WP_012303964.1\|2341244_2342195_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NZ_CP044064.1\|WP_002211866.1\|2339657_2340212_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224
NZ_CP044064.1\|WP_002216551.1\|2336308_2336518_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044064.1\|WP_038824571.1\|2361569_2362649_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP044064.1\|WP_012104947.1\|2338560_2339580_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NZ_CP044064.1\|WP_002210197.1\|2355657_2356482_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP044064.1\|WP_038401387.1\|2353491_2354430_-\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NZ_CP044064.1\|WP_038824570.1\|2359024_2360065_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NZ_CP044064.1\|WP_038823637.1\|2336641_2338000_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP044064.1\|WP_038823634.1\|2343965_2347256_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP044064.1\|WP_072080408.1\|2347252_2348239_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP044064.1\|WP_038823635.1\|2342191_2343538_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP044064.1\|WP_002210193.1\|2350940_2352215_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044064.1\|WP_002227890.1\|2349134_2350382_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740

Protein	Function_ID	Function_description	E-value
NZ_CP044064.1\|WP_011192622.1\|2338046_2338550_+\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	3.6884e-91
NZ_CP044064.1\|WP_002210201.1\|2360081_2361470_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NZ_CP044064.1\|WP_011192624.1\|2340222_2341227_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP044064.1\|WP_011192632.1\|2354455_2355511_-\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	1.45937e-164
NZ_CP044064.1\|WP_038824571.1\|2361569_2362649_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	4.8032e-165
NZ_CP044064.1\|WP_002210199.1\|2357466_2358753_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	2.85244e-50
NZ_CP044064.1\|WP_012303964.1\|2341244_2342195_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	3.18547e-153
NZ_CP044064.1\|WP_002211866.1\|2339657_2340212_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94
NZ_CP044064.1\|WP_012104947.1\|2338560_2339580_+\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	5.49557e-143
NZ_CP044064.1\|WP_002210197.1\|2355657_2356482_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NZ_CP044064.1\|WP_038401387.1\|2353491_2354430_-\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	7.77966e-175
NZ_CP044064.1\|WP_038823637.1\|2336641_2338000_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.23638e-50
NZ_CP044064.1\|WP_038823634.1\|2343965_2347256_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP044064.1\|WP_072080408.1\|2347252_2348239_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP044064.1\|WP_038823635.1\|2342191_2343538_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NZ_CP044064.1\|WP_038824570.1\|2359024_2360065_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	2.55582e-82
NZ_CP044064.1\|WP_002227890.1\|2349134_2350382_+\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.49285e-32

>NZ_CP044064.1|WP_072080408.1|2347252_2348239_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MAMENAIHSSDLKTILHSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILSRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRAKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NZ_CP044064.1|WP_038823634.1|2343965_2347256_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCHKRALDETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLRRFNAEGTVPTNTTQRDILRSQDENNWHSVETIALLAGIAGLFHDFGKANVLFQQGLQGQGKTYQPYRHEWVSLRLFQAFVEQKNDIQWLTALSQINPADETALMSNLVKDGLDDYTNPLAALPPFAKTIAWLILSHHRLPVYPSKDYHRPPKVEEIDDWLHQQLMPVWNSTNMDSGDWREKDKLDVWRFPHGTPLQSAEWRKKAQKFAKRALRQPSLVNDGHLNQRFTSHMARLALMLADHHYSSLPATPGWQDKNYQVFANTHNKMRDANAHSKTIEMKQRLDEHNIGVGQNALLLGRSLPHIRKTLPAITRHKGFKQRSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASTGCGKTFANTRIMYGLSDEKQGCRFSVALGLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPRGTGSQSADKFFSEHQYVSYDGSLDDGRLSTWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYRAGRADYQQASGQPDTPVNICCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEVLRRAELIPVSSASVKKGLVLDAMAAVMRDSMLRLHQAHHQTHPSEKTVSVGVVRMANIDPLVAIAQRLYAMAAPENYRIHYCVYHSQHPLAVRSAIERRLDVTLTRYQPNAFWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDHDYDWALAEPSSMRSFIQLAGRVQRHRQVAPQMANMHILQKNFKALTQKDPAIPVYCKPGFETTRCRLNTHDLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGSAEPLKYYAALWWRKQATWSGEQQRCTPFRQSSPDEQHNLWIDDEADKPVFKRLDSDQIEWKVSDGFQDVELTLAAGNSAWIDTDCLRIYQWLAESLNKELNEVSRQFGEVRLLPKKDGERWHYHPLLGVFGALD
>NZ_CP044064.1|WP_038823635.1|2342191_2343538_-|type-I-F-CRISPR-associated-protein-Csy1
MSDEGLTAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRQELIARYEVRNWLTDAANRAGQISLVTHALKFTHSDAKGSSVFNLPAAENDAIYLSSATLGQPAVDAVGNAAALDVAKLLQTEHNGDSLLACLNRADNSPLAALAENPQQLALWVEGFKQALVDKQLTSHKLAKQFYFPVGLDQYHLLSPLFSSSLAQAMHQRIAEARFSDQSKEAKVAHKAGKWHSEARVIYLKTAVQNIGGTKPQNISYLNSVRGGKVWLLPCGAPPWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQQYLLGVKPLSNTMDIRAVRLACSDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPNRAMDDPVFKLEREKGDWKQEVSQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETWS
>NZ_CP044064.1|WP_012303964.1|2341244_2342195_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLIVLHQVRVENANAIAGLTYGFPAITHFLGYSHALSRKLQSSHGLTLRGCAVICHHQQVHAYSSGRDYVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLVIECDGTIANGDDGANALEKHLASLCLTQRLAGGTITNIRRVKVINYPETEAATRRLLCHLLPGFALLDRSELLAEHLNQLRQTNPQTEMLDAWLDFSALKIQAIPPQSDTPVESGAPAPWGYVGKPAAGYLVPIVTGYRAISPLYAPGEVDKTRDPHTPFRFVESLYGIGEWRGLHRITDLRQLLWGYHQEGDNYLCRCALPASVDTYLLNDEE
>NZ_CP044064.1|WP_011192624.1|2340222_2341227_-|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPVKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NZ_CP044064.1|WP_002211866.1|2339657_2340212_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NZ_CP044064.1|WP_012104947.1|2338560_2339580_+|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGRIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGTDCMLVGADTIEQINSAVTALRISLNAEENFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NZ_CP044064.1|WP_011192622.1|2338046_2338550_+|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHCPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NZ_CP044064.1|WP_038823637.1|2336641_2338000_+|MFS-transporter
MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWPMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NZ_CP044064.1|WP_002216551.1|2336308_2336518_-|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK
>NZ_CP044064.1|WP_002227890.1|2349134_2350382_+|mechanosensitive-ion-channel
MMQQRISQWLERLGMEFSDVMSLTMVIGLILLISVMIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NZ_CP044064.1|WP_002210193.1|2350940_2352215_-|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NZ_CP044064.1|WP_038824568.1|2352253_2353369_-|hypothetical-protein
MKHKKYLPLFLMVGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHAGLEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDCYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NZ_CP044064.1|WP_038401387.1|2353491_2354430_-|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGVGDKDVYNITAPFTSAGQVVIAGRVEARDSEHSTIVFFREQQGQWAPVENAPTFQLQDPFFTWIEDELIFGGVEINPHPDNPGQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITSAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTRNYTPIKIIAARDNFLPGAAKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NZ_CP044064.1|WP_011192632.1|2354455_2355511_-|glycosidase
MIRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NZ_CP044064.1|WP_002210197.1|2355657_2356482_-|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NZ_CP044064.1|WP_002210199.1|2357466_2358753_-|carbohydrate-ABC-transporter-substrate-binding-protein
MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLDFMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTATPDEALQQSIKEVNAILKP
>NZ_CP044064.1|WP_038824570.1|2359024_2360065_+|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLVKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NZ_CP044064.1|WP_002210201.1|2360081_2361470_+|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK
>NZ_CP044064.1|WP_038824571.1|2361569_2362649_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MASVSLANVVKYYGKIKTIDNVNLEIASREFIVLVGPSGCEKSTLLRMIAGLEDVNSGEIKIEDKDVTQTNAGARGVSMVFQSYALYPHMTVRENLAFGLKNIKIPKQEIADRIANASNILQLDNYLERLPQHLSGGQRQRVAIGRSIVSRSKVFLFDEPLSNLDAALRIQMRQEIGKLHERLGKTTIYVTHDQTEAMTLADRIVILNQGRIEQIGTPEEVYNHPANLFVAGFIGAPKINLFNAVYEQDGYVNINGLRFFIPRLVNLNLAMGAVLTLAIRPEHFSLTNSTELSLTVKTDITEMHGDSTVVLFSSTEHGTLQMKVPYQLKLSVGEDVTIGASCEHILVFDEHGQAIHGES

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Crispr_ID: NZ_CP044064_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044064_4

3967633-3967760

Orphan

Consensus_repeat	Method
TTAGGCTTTTAATCCATTTTTGATTTTGAATGGGTTGTTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044064_4

>merge|NZ_CP044064|4|3967633-3967760|CRISPRCasFinder
TTAGGCTTTTAATCCATTTTTGATTTTGAATGGGTTGTTGACGTCCAAAACACATTTGAGCAGCCGATTGACGCGAGACCATCATCCTTAGGCTTTTAATCTATTTTTGATTTTGAATGGGTTGTTGA

>NZ_CP044064|4|4|3967633-3967760|CRISPRCasFinder
TTAGGCTTTTAATCCATTTTTGATTTTGAATGGGTTGTTGA	CGTCCAAAACACATTTGAGCAGCCGATTGACGCGAGACCATCATCC
TTAGGCTTTTAATCTATTTTTGATTTTGAATGGGTTGTTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044064.1\|WP_002228153.1\|3959056_3959416_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|179327
NZ_CP044064.1\|WP_002228154.1\|3959957_3960167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044064.1\|WP_071525561.1\|3970078_3970312_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044064.1\|WP_011193349.1\|3966690_3967500_+\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
NZ_CP044064.1\|WP_011193328.1\|3969138_3970101_-\|threonine/serine-dehydratase	unknown	unknown	gnl\|CDD\|180709
NZ_CP044064.1\|WP_038824433.1\|3971649_3971988_-\|YceK/YidQ-family-lipoprotein	unknown	unknown	gnl\|CDD\|183233
NZ_CP044064.1\|WP_038824365.1\|3962956_3964042_+\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|273173
NZ_CP044064.1\|WP_038824367.1\|3961683_3962784_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP044064.1\|WP_038824431.1\|3973886_3975545_+\|putative-transporter	unknown	unknown	gnl\|CDD\|179654
NZ_CP044064.1\|WP_038824434.1\|3970308_3971610_+\|DUF3748-domain-containing-protein	unknown	unknown	gnl\|CDD\|372193
NZ_CP044064.1\|WP_038401683.1\|3975657_3976923_-\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|236517
NZ_CP044064.1\|WP_011193327.1\|3968191_3969145_-\|ornithine-cyclodeaminase-family-protein	unknown	unknown	gnl\|CDD\|136070
NZ_CP044064.1\|WP_002220736.1\|3959434_3959575_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NZ_CP044064.1\|WP_002209642.1\|3964061_3966476_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NZ_CP044064.1\|WP_002220739.1\|3957192_3958833_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NZ_CP044064.1\|WP_038824432.1\|3972355_3972769_+\|heat-shock-chaperone-IbpA	unknown	unknown	gnl\|CDD\|182691
NZ_CP044064.1\|WP_038824369.1\|3960290_3961679_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NZ_CP044064.1\|WP_071825454.1\|3967898_3968090_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044064.1\|WP_002209635.1\|3973049_3973514_+\|heat-shock-chaperone-IbpB	unknown	unknown	gnl\|CDD\|183223
NZ_CP044064.1\|WP_002228756.1\|3958835_3959093_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|178815

Protein	Function_ID	Function_description	E-value
NZ_CP044064.1\|WP_002228153.1\|3959056_3959416_-\|ribonuclease-P-protein-component	gnl\|CDD\|179327	PRK01732, rnpA, ribonuclease P; Reviewed.	9.80074e-75
NZ_CP044064.1\|WP_038401683.1\|3975657_3976923_-\|valine--pyruvate-transaminase	gnl\|CDD\|236517	PRK09440, avtA, valine--pyruvate transaminase; Provisional.	0
NZ_CP044064.1\|WP_011193349.1\|3966690_3967500_+\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	0
NZ_CP044064.1\|WP_011193328.1\|3969138_3970101_-\|threonine/serine-dehydratase	gnl\|CDD\|180709	PRK06815, PRK06815, threonine/serine dehydratase.	0
NZ_CP044064.1\|WP_038824433.1\|3971649_3971988_-\|YceK/YidQ-family-lipoprotein	gnl\|CDD\|183233	PRK11616, PRK11616, hypothetical protein; Provisional.	1.274e-55
NZ_CP044064.1\|WP_038824365.1\|3962956_3964042_+\|DNA-replication/repair-protein-RecF	gnl\|CDD\|273173	TIGR00611, DNA_replication_and_repair_protein_RecF, recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.67417e-157
NZ_CP044064.1\|WP_038824367.1\|3961683_3962784_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	0
NZ_CP044064.1\|WP_038824431.1\|3973886_3975545_+\|putative-transporter	gnl\|CDD\|179654	PRK03818, PRK03818, putative transporter; Validated.	0
NZ_CP044064.1\|WP_038824434.1\|3970308_3971610_+\|DUF3748-domain-containing-protein	gnl\|CDD\|372193	pfam12566, DUF3748, Protein of unknown function (DUF3748). This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.	3.59974e-72
NZ_CP044064.1\|WP_011193327.1\|3968191_3969145_-\|ornithine-cyclodeaminase-family-protein	gnl\|CDD\|136070	PRK06823, PRK06823, ornithine cyclodeaminase family protein.	0
NZ_CP044064.1\|WP_002220736.1\|3959434_3959575_-\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	1.56242e-10
NZ_CP044064.1\|WP_002209642.1\|3964061_3966476_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_CP044064.1\|WP_002220739.1\|3957192_3958833_-\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NZ_CP044064.1\|WP_038824432.1\|3972355_3972769_+\|heat-shock-chaperone-IbpA	gnl\|CDD\|182691	PRK10743, PRK10743, heat shock chaperone IbpA.	2.18769e-94
NZ_CP044064.1\|WP_038824369.1\|3960290_3961679_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP044064.1\|WP_002209635.1\|3973049_3973514_+\|heat-shock-chaperone-IbpB	gnl\|CDD\|183223	PRK11597, PRK11597, heat shock chaperone IbpB; Provisional.	1.02292e-95
NZ_CP044064.1\|WP_002228756.1\|3958835_3959093_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|178815	PRK00041, PRK00041, hypothetical protein; Validated.	2.86851e-44

>NZ_CP044064.1|WP_011193349.1|3966690_3967500_+|sugar-phosphatase
MAIELIAIDMDGTLLNPQHEITPRVKQAIAAARAKGVCVVLATGRPYIGVQRYLRELNMENSGDYCISNNGALVQKAATGECILQETLSFEDYLYFEALSRELGVSFQAFDFNTLYTANKDISKYTLHEVMLTGIPLKYRAVEEMDPTLRFPKVMMIDEPERLDRALAMMPAEVFERFTIMKSAPFYLEILSKRVDKGTGVKMLAEHLGIAQKNVMALGDQGNDIAMVNYAGVGVAMGNAIPELKEIAQYVTGTNCEDGVATAIEKYIG
>NZ_CP044064.1|WP_002209642.1|3964061_3966476_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEILVTIHADNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGETEQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKEDHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDGAALHTNAHAPALAGEPLEKLVAEHYSVQKTIARMERRYPRALLNNLIYQPTLQEEDLGNKEVVTQWIDSLVVLLNEKEHHGSSYSSVVRENRERQLFEPILRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIEDGAFVERGERRVPVSSFEEALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVMVKDAIAADQLFTTLMGDAVEPRRAFIEENALRAANIDI
>NZ_CP044064.1|WP_038824365.1|3962956_3964042_+|DNA-replication/repair-protein-RecF
MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHECAEFVLHGRVDANEREASVGLSKSRQGDTKVRIDGTDGHKVAELAQMLPMQLITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVSRYTQIRAWDQEIIPLAERISEWRAAYSDAIAADISATCALFLPEFALSFSFQRGWDKESDYGELLARQFERDRALTYTAVGPHKADFRIRADGTPVEDLLSRGQLKLLMCALRLAQGEFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADIVGEKGKMFRVEHGKIEVQPQD
>NZ_CP044064.1|WP_038824367.1|3961683_3962784_+|DNA-polymerase-III-subunit-beta
MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALSQSHEPGATTVPARKFFDIWRGLPEGAEITVALDDDRLLVRSGRSRFSLSTLPAIDFPNLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITANNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKCEDVRLLLTDSVSSVQIEDSASQAAAYVVMPMRL
>NZ_CP044064.1|WP_038824369.1|3960290_3961679_+|chromosomal-replication-initiator-protein-DnaA
MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGTEVPLLRFEVGSKPAARAHNNPVTASVSAPVALVTRSAPMRPSWDNSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS
>NZ_CP044064.1|WP_002228154.1|3959957_3960167_-|hypothetical-protein
MFFTADFLRLTFPHDPRVEEAIGMADHNAKGAIDPLLPHRLDPFYPQAVTFAMSVTQHIGFRDLIVKDP
>NZ_CP044064.1|WP_002220736.1|3959434_3959575_-|50S-ribosomal-protein-L34
MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKSRSRLTVSK
>NZ_CP044064.1|WP_002228153.1|3959056_3959416_-|ribonuclease-P-protein-component
MVKLAFPRELRLLTPSHFTFVFQQPQRAGTPQITILGRLNELGHPRIGLTVAKKHVKRAHERNRIKRLTRESFRLHQHALPSMDFVVLVKKGVADLDNRALTEALEKLWRRHCRQAPAS
>NZ_CP044064.1|WP_002228756.1|3958835_3959093_-|membrane-protein-insertion-efficiency-factor-YidD
MASPLSPGSRILIGLIRGYQLVISPLLGPRCRFHPTCSHYGIEALRRFGMIKGSWLTLKRVLKCHPLNSGGDDPVPPKLDDNREH
>NZ_CP044064.1|WP_002220739.1|3957192_3958833_-|membrane-protein-insertase-YidC
MDSQRNLLLIALLFVSFMIWQAWQVDNNPQPTAQTTQQTTNTATGDKASQAVPGSGQGQLITVKTDVLSLTINTRGGDIEQANLLAYPDTLGSSNTFELLETTPSFVYQAQSGLTGKNGPDNPANGDRPLFEVPQTSFVLADGQDELRIPLTFTSKDGSVFIKTFVLKRNDYAIGVDYHVNNASAAPLELTLFGQLKQSINLPKKRDTGSNNFALQTYRGAAYSSDETKYKKYSFSDIEDKNLDITTKGGWVAMLQQYFATAWIPAANETNTFYSAELGNGLAAIGFKGAPVVIQPGEQKQLSATLWVGPEIQNKMAEIAPHLDLTVDYGWLWFISQPLFKLLKFIHSFVGNWGFSIIVITFIVRGIMYPLTKAQYTSMAKMRLLQPKLAAMRERIGDDKQRMSQEMMALYKAEKVNPLGGCLPLIIQMPIFLALYYMLMSSVELRHAPFILWIHDLSAQDPYYILPILMGITMYFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPAGLVLYYIVSNLVTILQQQLIYRGLEKRGLHSREKKK
>NZ_CP044064.1|WP_071825454.1|3967898_3968090_+|hypothetical-protein
MKVGREAWMPSEGRLSRKRIGPVRQRNDESRDPTQWASDSAKARGSKGATLMAPLAVGSSEAR
>NZ_CP044064.1|WP_011193327.1|3968191_3969145_-|ornithine-cyclodeaminase-family-protein
MLILNKQKILDKFDADRITLLLKEGFIAFSQQRVQMPPVQHLLFDQANGDCCIKSGYLQGDDQFVVKVSGGFYDNPAQGLASNQGLMMAFSAKTGEPQAILLDEGWLTALRTALAGRIVAELCAPQHISALGIVGTGIQARLHLMYLKNVMTCRQLWVWGRSETALEEYRQYAQAEGFAVNTTLNAAELAHHSQFIVTTTPSREPILQAEDIQPGTHITAVGADSAGKHELSAELVARADKILVDSIAQCTDFGEVSLAFKQGLLAHHNLTEIGLALAQGIPFRENDQQITLADLTGLGIQDVQIVKGILGDKKGVL
>NZ_CP044064.1|WP_011193328.1|3969138_3970101_-|threonine/serine-dehydratase
MNTLFDAIREAHQILRPQVRVTPLEHSPLLSQHSGCEIYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASTGNHGQGVALAAKLAGIKSTIYAPEQAAAIKLDVIRALGGQIELVSGDALNAELAAGIAAEQQGKVYISPYNDPQVIAGQGTCGMEMVEQQPELDAVFVAVGGGGLISGIATVLKTLSDKTQVIGCWPANATSLYTCLEKGQIQEVAEQETLSDGTAGGIEPGAITFALCQQLIDQKVLVSEQEIKEAMGLIARTDRWMIEGAAGVALAAALKLAPQWQGKKVAVVLCGKNIVLEKYLGAVSGC
>NZ_CP044064.1|WP_071525561.1|3970078_3970312_+|hypothetical-protein
MASNNVFISIPLNFIFNISVVQQVVCALAASCNSNYLGDIRQNMTGRSVCHNGIHIQQKMSFATYHKRIKSIKELKI
>NZ_CP044064.1|WP_038824434.1|3970308_3971610_+|DUF3748-domain-containing-protein
MNAQKPRFLPEQQLTFDPRGHQLTNINVWTPDSQWLAYDVRPSGGTFNGLTIERVNCITGEIEVIYRARQGAHVGVVTVSPDMPARYVFIHGPEHPDSHWHYDFHHRRGVIVSEPDRELAVTLDAMDITAPYTPGALRGGSHVHVFSPDGSRLSFTYNDHVLHERDPALDCRNVGVALPLRGVNPPKHHPREHDGSHFCVLISCTTPTPQAGSDQINRAYEEGWIGARGYVKADGTRQRWALAFIGDTFSVQSEKVPEIFIADLPEHDRDYARAGTHPLEGTENTLPAPPAGVSQRRLTYTTERPFPGLATRPRHWLRSSPDGSAIACLMNDDNGVVQLWLISPNGGELRQLTASQWGIQSAFSWSPQGEHLAFICDNSVMLCDSLTGHLRRLTARSVVAPLADAVVFSPNGKKIAFMREIDGWAQIFTVHAD
>NZ_CP044064.1|WP_038824433.1|3971649_3971988_-|YceK/YidQ-family-lipoprotein
MRNIVIPFATGCSLLLTSGCSSILSHTSSSQGYYSGTEANIAMLKDDDTGWALRPLLAIDLPFSAVMDTLFLPYDYLRSDSEDKAASSPRERVRQSEMQNQQTNQTGDTPKQ
>NZ_CP044064.1|WP_038824432.1|3972355_3972769_+|heat-shock-chaperone-IbpA
MRNSDLAPLYRSAIGFDRLFNFLESGQNQSNGGYPPYNVELVDENNYRIAIAVAGFAEQELEITTQDNLLIVRGSHANEPAQRTYLYQGIAERNFERKFQLAEHIKIKGANLVNGLLYIDLERLVPESLKPRRIEIK
>NZ_CP044064.1|WP_002209635.1|3973049_3973514_+|heat-shock-chaperone-IbpB
MRNYDLSPLLRQWIGFDKLASTMQGGQEPQGFPPYNIEKTDDNHYRISLALAGFKQSELDIEVEGPRLTVRGKPTPVEKQVEYLHQGLVRKEFSLTFTLAEHLNVDNAQFENGLLHIDLLRQVPEALQPQRIAIGSATPQERQVLESPEAPDQQ
>NZ_CP044064.1|WP_038824431.1|3973886_3975545_+|putative-transporter
MSAIALTVSMLALVAVLGLWIGNWKIYGVGLGIGGVLFGGIIVGHFAQTYQIVLNGDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRVAGLRLNCFAILMVVVGGLVTAIIHKLFAVPLPIILGVFSGAVTNTPALGAAQQILTDLGSPPQLVSQMGMGYAMAYPFGICGILLVMWLIRLFFKINIDREAKAFDSSYGQNRELLQTMNVAVRNPNLHGLSVQEVPLLNSDEVVCSRLKRGDLLMVPMPATVIEIGDYLHLVGQRDALEKVRLVVGEEVDVTLSTAGTALQTARVVVTNEAVLGKKIRDLNLKQKYDVVITRLNRAGIELVASNSASLQFGDILNLVGRPEAIEAVSAIVGNAQQKLQQVQMLPVFIGVGLGVLLGSIPLFVPGFPAALRLGLAGGPLVVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFINTLVKGDGLAWIGYGAMITGIPLLTVGILARMLVKMNYLTLCGMLAGSMTDPPALAFANGLHPTSGAAALSYATVYPLAMFLRIMSPQILAVLFWTL
>NZ_CP044064.1|WP_038401683.1|3975657_3976923_-|valine--pyruvate-transaminase
MKFSLFGDKFTRYAGITRLMDDLNDGLRTPGSIMLGGGNPAHIPEMDTYFQQLCQEMLTEGKLTEALCNYDGPQGKDLLLNALAKMLRDELGWQIEPQNIALTNGSQSAFFYLFNLFAGRYADGSRRRVLFPLAPEYLGYADAGLDEDLFVSAKPNIELLPEGQFKYHVDFEHLNITDDIGLICVSRPTNPTGNVITDEELIRLDAIAQQRNIPLLIDNAYGVPFPGIIFTDATPLWNPNIILCMSLSKLGLPGSRCGIVIADEKVISAITNMNGIISLSPGGMGPAIAAEMIERGDLLRLSNEVIRPFYFERVQQTIAILRKYLPAERCLIHKPEGAIFLWLWFKDLPISTELLYQRLKKRGVLMVPGHYFFPGLGYDWPHTHQCMRMNYVPAPEMIEKGVAILAEEIERAFQEAKQLTD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044064_3	3.3\|2348741\|32\|NZ_CP044064\|CRISPRCasFinder,CRT	2348741-2348772	32	NZ_CP009710	Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence	16589-16620	0	1.0
NZ_CP044064_3	3.3\|2348741\|32\|NZ_CP044064\|CRISPRCasFinder,CRT	2348741-2348772	32	NC_006154	Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953, complete sequence	9645-9676	0	1.0
NZ_CP044064_3	3.5\|2348741\|31\|NZ_CP044064\|PILER-CR	2348741-2348771	31	NZ_CP009710	Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence	16590-16620	0	1.0
NZ_CP044064_3	3.5\|2348741\|31\|NZ_CP044064\|PILER-CR	2348741-2348771	31	NC_006154	Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953, complete sequence	9646-9676	0	1.0
NZ_CP044064_2	2.1\|1156300\|29\|NZ_CP044064\|CRISPRCasFinder	1156300-1156328	29	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	5774-5802	7	0.759
NZ_CP044064_2	2.1\|1156300\|29\|NZ_CP044064\|CRISPRCasFinder	1156300-1156328	29	MN304824	Catenulispora phage 69_17, complete genome	22338-22366	7	0.759
NZ_CP044064_3	3.5\|2348741\|31\|NZ_CP044064\|PILER-CR	2348741-2348771	31	NC_042136	Vibrio phage VP4B, partial genome	50292-50322	7	0.774
NZ_CP044064_3	3.3\|2348741\|32\|NZ_CP044064\|CRISPRCasFinder,CRT	2348741-2348772	32	NC_042136	Vibrio phage VP4B, partial genome	50291-50322	8	0.75
NZ_CP044064_3	3.4\|2348681\|31\|NZ_CP044064\|PILER-CR	2348681-2348711	31	CP032840	Aeromonas veronii strain FC951 plasmid unnamed	102376-102406	8	0.742
NZ_CP044064_3	3.5\|2348741\|31\|NZ_CP044064\|PILER-CR	2348741-2348771	31	MN855759	Siphoviridae sp. isolate 62, complete genome	23698-23728	8	0.742
NZ_CP044064_3	3.1\|2348621\|32\|NZ_CP044064\|CRISPRCasFinder,CRT	2348621-2348652	32	LR700236	marine metagenome genome assembly, complete genome: monopartite	6797-6828	9	0.719
NZ_CP044064_3	3.2\|2348681\|32\|NZ_CP044064\|CRISPRCasFinder,CRT	2348681-2348712	32	CP032840	Aeromonas veronii strain FC951 plasmid unnamed	102375-102406	9	0.719
NZ_CP044064_3	3.3\|2348741\|32\|NZ_CP044064\|CRISPRCasFinder,CRT	2348741-2348772	32	MN855759	Siphoviridae sp. isolate 62, complete genome	23697-23728	9	0.719
NZ_CP044064_3	3.1\|2348621\|32\|NZ_CP044064\|CRISPRCasFinder,CRT	2348621-2348652	32	NZ_AP014640	Leptolyngbya boryana IAM M-101 plasmid pLBX	317343-317374	10	0.688
NZ_CP044064_3	3.1\|2348621\|32\|NZ_CP044064\|CRISPRCasFinder,CRT	2348621-2348652	32	NZ_AP018205	Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome	188128-188159	10	0.688
NZ_CP044064_3	3.1\|2348621\|32\|NZ_CP044064\|CRISPRCasFinder,CRT	2348621-2348652	32	NZ_AP018205	Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome	525350-525381	10	0.688
NZ_CP044064_3	3.1\|2348621\|32\|NZ_CP044064\|CRISPRCasFinder,CRT	2348621-2348652	32	AP013401	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S37-C49	10377-10408	10	0.688

1. spacer 3.3|2348741|32|NZ_CP044064|CRISPRCasFinder,CRT matches to NZ_CP009710 (Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence) position: , mismatch: 0, identity: 1.0

ttatcggggtcggttgcatcactaatgacatt	CRISPR spacer
ttatcggggtcggttgcatcactaatgacatt	Protospacer
********************************

2. spacer 3.3|2348741|32|NZ_CP044064|CRISPRCasFinder,CRT matches to NC_006154 (Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953, complete sequence) position: , mismatch: 0, identity: 1.0

ttatcggggtcggttgcatcactaatgacatt	CRISPR spacer
ttatcggggtcggttgcatcactaatgacatt	Protospacer
********************************

3. spacer 3.5|2348741|31|NZ_CP044064|PILER-CR matches to NZ_CP009710 (Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence) position: , mismatch: 0, identity: 1.0

ttatcggggtcggttgcatcactaatgacat	CRISPR spacer
ttatcggggtcggttgcatcactaatgacat	Protospacer
*******************************

4. spacer 3.5|2348741|31|NZ_CP044064|PILER-CR matches to NC_006154 (Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953, complete sequence) position: , mismatch: 0, identity: 1.0

ttatcggggtcggttgcatcactaatgacat	CRISPR spacer
ttatcggggtcggttgcatcactaatgacat	Protospacer
*******************************

5. spacer 2.1|1156300|29|NZ_CP044064|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

gtcagctcatcgggattcgtttgctgcat	CRISPR spacer
aggaagccatcggcattcgtttgctgcat	Protospacer
.  *. .****** ***************

6. spacer 2.1|1156300|29|NZ_CP044064|CRISPRCasFinder matches to MN304824 (Catenulispora phage 69_17, complete genome) position: , mismatch: 7, identity: 0.759

gtcagctcatcgggattcgtttgctgcat	CRISPR spacer
cccagctcagcgggattcgcttgcttcgc	Protospacer
 .******* *********.***** *..

7. spacer 3.5|2348741|31|NZ_CP044064|PILER-CR matches to NC_042136 (Vibrio phage VP4B, partial genome) position: , mismatch: 7, identity: 0.774

ttatcggggtcggttgcatcactaatgacat	CRISPR spacer
cgaacgtggtcggttgcatcaataatgaaag	Protospacer
. * ** ************** ****** *

8. spacer 3.3|2348741|32|NZ_CP044064|CRISPRCasFinder,CRT matches to NC_042136 (Vibrio phage VP4B, partial genome) position: , mismatch: 8, identity: 0.75

ttatcggggtcggttgcatcactaatgacatt	CRISPR spacer
cgaacgtggtcggttgcatcaataatgaaaga	Protospacer
. * ** ************** ****** *

9. spacer 3.4|2348681|31|NZ_CP044064|PILER-CR matches to CP032840 (Aeromonas veronii strain FC951 plasmid unnamed) position: , mismatch: 8, identity: 0.742

cgtgattggccacttggctgagaatgatgtc	CRISPR spacer
gtttcatgtccacttggctgagaacgatgta	Protospacer
  *   ** ***************.*****

10. spacer 3.5|2348741|31|NZ_CP044064|PILER-CR matches to MN855759 (Siphoviridae sp. isolate 62, complete genome) position: , mismatch: 8, identity: 0.742

ttatcggggtcggttgcatcactaatgacat	CRISPR spacer
tcgtcgggttcggttgcatcactgatattgt	Protospacer
*..***** **************.**. ..*

11. spacer 3.1|2348621|32|NZ_CP044064|CRISPRCasFinder,CRT matches to LR700236 (marine metagenome genome assembly, complete genome: monopartite) position: , mismatch: 9, identity: 0.719

cgtcccctttttgcagatctgcaaattaaagt	CRISPR spacer
gctcccctttttgcagaggtgcaaaatccttt	Protospacer
  ***************  ****** *    *

12. spacer 3.2|2348681|32|NZ_CP044064|CRISPRCasFinder,CRT matches to CP032840 (Aeromonas veronii strain FC951 plasmid unnamed) position: , mismatch: 9, identity: 0.719

cgtgattggccacttggctgagaatgatgtca	CRISPR spacer
gtttcatgtccacttggctgagaacgatgtag	Protospacer
  *   ** ***************.***** .

13. spacer 3.3|2348741|32|NZ_CP044064|CRISPRCasFinder,CRT matches to MN855759 (Siphoviridae sp. isolate 62, complete genome) position: , mismatch: 9, identity: 0.719

ttatcggggtcggttgcatcactaatgacatt	CRISPR spacer
tcgtcgggttcggttgcatcactgatattgtc	Protospacer
*..***** **************.**. ..*.

14. spacer 3.1|2348621|32|NZ_CP044064|CRISPRCasFinder,CRT matches to NZ_AP014640 (Leptolyngbya boryana IAM M-101 plasmid pLBX) position: , mismatch: 10, identity: 0.688

cgtcccctttttgcagatctgcaaattaaagt	CRISPR spacer
caatccctttgtgcagatctgcaagttgtttc	Protospacer
*. .****** *************.**.   .

15. spacer 3.1|2348621|32|NZ_CP044064|CRISPRCasFinder,CRT matches to NZ_AP018205 (Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome) position: , mismatch: 10, identity: 0.688

cgtcccctttttgcagatctgcaaattaaagt	CRISPR spacer
caatccctttgtgcagatctgcaagttgtttc	Protospacer
*. .****** *************.**.   .

16. spacer 3.1|2348621|32|NZ_CP044064|CRISPRCasFinder,CRT matches to NZ_AP018205 (Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome) position: , mismatch: 10, identity: 0.688

cgtcccctttttgcagatctgcaaattaaagt	CRISPR spacer
caatccctttgtgcagatctgcaagttgtttc	Protospacer
*. .****** *************.**.   .

17. spacer 3.1|2348621|32|NZ_CP044064|CRISPRCasFinder,CRT matches to AP013401 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S37-C49) position: , mismatch: 10, identity: 0.688

cgtcccctttttgcagatctgcaaattaaagt	CRISPR spacer
agaaaaaagtttgcatatgtgcaaattaaagt	Protospacer
 *       ****** ** *************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

301020 : 376421

Yellowstone_lake_phycodnavirus(25.0%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210478.1\|301020_301464_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_038825529.1\|301496_303341_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012105683.1\|303333_304317_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_072080720.1\|304319_306923_+	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	1.9e-77	28.7
WP_011191715.1\|307026_309375_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.1e-14	32.9
WP_038824562.1\|309387_311607_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_002214739.1\|311632_312736_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_002210473.1\|312728_313346_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_038824563.1\|313351_313717_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_012304592.1\|313709_314201_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002210470.1\|314302_315658_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_038824565.1\|320781_321135_+	hypothetical protein	NA	NA	NA	NA
WP_011191719.1\|321390_324297_-	RNA polymerase-associated protein RapA	A0A1B1IUI1	uncultured_Mediterranean_phage	6.8e-23	37.1
WP_002210466.1\|324757_327127_-	DNA polymerase II	A0A0P0YM26	Yellowstone_lake_phycodnavirus	1.5e-31	25.5
WP_038824617.1\|327322_328090_+	DedA family protein	NA	NA	NA	NA
WP_038824616.1\|328158_328869_-	thiamine ABC transporter ATP-binding protein ThiQ	G3M9Y6	Bacillus_virus	1.3e-20	34.1
WP_016582381.1\|328855_330463_-	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA
WP_024063117.1\|330438_331431_-	thiamine ABC transporter substrate binding subunit	NA	NA	NA	NA
WP_024063118.1\|332076_333579_+	hypothetical protein	NA	NA	NA	NA
WP_012413474.1\|333823_333955_-\|transposase	transposase	NA	NA	NA	NA
WP_011191725.1\|334501_336163_-	HTH-type transcriptional regulator SgrR	NA	NA	NA	NA
WP_002224086.1\|336616_337798_+	MFS transporter	NA	NA	NA	NA
WP_002210456.1\|338038_338641_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_038824615.1\|338655_340086_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_038824614.1\|340087_341179_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_002210453.1\|341181_342744_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_012413476.1\|343090_343282_-	hypothetical protein	NA	NA	NA	NA
WP_002216434.1\|343958_344915_+	transcriptional regulator LeuO	NA	NA	NA	NA
WP_002216435.1\|345238_345445_+	hypothetical protein	NA	NA	NA	NA
WP_002216437.1\|345441_347247_+	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	3.5e-38	23.2
WP_032467132.1\|347277_347388_+	hypothetical protein	NA	NA	NA	NA
WP_002228103.1\|347706_349434_+	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	7.8e-59	29.4
WP_002210448.1\|349436_349931_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_002217242.1\|350196_350313_-	hypothetical protein	NA	NA	NA	NA
WP_011191729.1\|350379_351390_+	catabolite repressor/activator	NA	NA	NA	NA
WP_072080719.1\|351520_351967_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_087768171.1\|352418_352508_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_038824087.1\|353062_353521_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_038824089.1\|353523_354486_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_002210441.1\|354482_354800_+	cell division protein FtsL	NA	NA	NA	NA
WP_011191731.1\|354865_356629_+	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
WP_011191732.1\|356630_358103_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_011191733.1\|358099_359476_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_002210437.1\|359469_360552_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_012304586.1\|360554_361871_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_002210435.1\|361870_363073_+	cell division protein FtsW	NA	NA	NA	NA
WP_038824090.1\|363069_364140_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_038401631.1\|364277_365753_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_002210432.1\|365745_366666_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_011191736.1\|366667_367495_+	cell division protein FtsQ	NA	NA	NA	NA
WP_002210431.1\|367521_368778_+	cell division protein FtsA	NA	NA	NA	NA
WP_002210430.1\|368850_370002_+	cell division protein FtsZ	NA	NA	NA	NA
WP_002228285.1\|370101_371022_+	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA
WP_002228099.1\|371188_371719_-	DUF721 domain-containing protein	NA	NA	NA	NA
WP_011191738.1\|371741_372275_+	secA regulator SecM	NA	NA	NA	NA
WP_002210426.1\|372352_375067_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_002430076.1\|374953_375184_-	hypothetical protein	NA	NA	NA	NA
WP_002210424.1\|375361_375748_+	8-oxo-dGTP diphosphatase MutT	A0A0B5CYJ3	Rhizoctonia_fumigata_mycovirus	8.4e-06	30.4
WP_002213759.1\|375962_376421_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

741405 : 748831

Acanthocystis_turfacea_Chlorella_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011191888.1\|741405_742527_+	GDP-mannose 4,6-dehydratase	M1HVG7	Acanthocystis_turfacea_Chlorella_virus	5.8e-132	64.4
WP_038824235.1\|742532_743498_+	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	3.6e-82	47.6
WP_072080756.1\|743671_745066_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.7e-53	30.7
WP_012304488.1\|745100_745850_+	glycosyltransferase	A0A1V0SAH6	Catovirus	1.8e-07	36.0
WP_038825184.1\|746197_747157_+	NAD-dependent epimerase/dehydratase family protein	A0A2D2W2D2	Stenotrophomonas_phage	4.7e-05	30.1
WP_038825186.1\|747460_748831_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	5.3e-34	28.9

DBSCAN-SWA_3

1035704 : 1085511

Pseudomonas_phage(23.81%)

tail,protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213759.1\|1035704_1036163_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002221775.1\|1036284_1037493_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_002210814.1\|1038111_1039305_+	nicotinamide mononucleotide deamidase-related protein YfaY	NA	NA	NA	NA
WP_002210815.1\|1039362_1039872_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_002210816.1\|1039906_1040164_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	4.0e-20	54.9
WP_002210817.1\|1040167_1041298_-	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	7.6e-172	78.6
WP_002210818.1\|1041459_1043748_-	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.1e-286	64.9
WP_038825149.1\|1044241_1044970_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_012105449.1\|1045269_1047963_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	1.4e-102	34.4
WP_011171779.1\|1048150_1051024_+	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	3.8e-42	28.3
WP_002210824.1\|1051091_1051745_-	transcriptional regulator RcsB	NA	NA	NA	NA
WP_038825148.1\|1051747_1054441_-	phosphotransferase RcsD	NA	NA	NA	NA
WP_002210825.1\|1054464_1055619_-	MFS transporter	NA	NA	NA	NA
WP_038825147.1\|1056660_1057776_+	porin OmpC	Q1MVN1	Enterobacteria_phage	6.2e-110	57.4
WP_012304343.1\|1057812_1058421_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012105445.1\|1058568_1059030_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_038823879.1\|1059656_1060823_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA
WP_002230695.1\|1063001_1064030_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002208868.1\|1064103_1065891_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-10	63.5
WP_002368991.1\|1065990_1066173_-	hypothetical protein	NA	NA	NA	NA
WP_050124595.1\|1066297_1067233_-	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA
WP_002208866.1\|1067404_1067647_-	DinI family protein	K7PKR6	Enterobacteria_phage	6.9e-22	65.0
WP_002208864.1\|1067852_1068575_-	LexA family transcriptional regulator	F1C599	Cronobacter_phage	2.2e-63	51.9
WP_071990122.1\|1068537_1068750_-	hypothetical protein	NA	NA	NA	NA
WP_002215470.1\|1068848_1069328_+	antitermination protein Q	S5M7R9	Escherichia_phage	2.3e-37	61.0
WP_072080808.1\|1069529_1070843_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	5.9e-91	46.0
WP_032466639.1\|1070899_1071571_+	aldolase	A0A077SK32	Escherichia_phage	1.3e-57	54.9
WP_002228023.1\|1071570_1072386_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002228022.1\|1072403_1073156_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_002208859.1\|1073786_1074077_+	hypothetical protein	H6WRZ3	Salmonella_phage	7.7e-12	46.3
WP_002208858.1\|1074122_1074740_+	ATP-binding protein	NA	NA	NA	NA
WP_002208857.1\|1074744_1074939_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.5e-08	60.4
WP_002208856.1\|1074935_1076444_+\|tail	tail protein	B5TK67	Pseudomonas_phage	2.4e-104	44.2
WP_002208855.1\|1076465_1076834_+\|tail	phage tail protein	NA	NA	NA	NA
WP_038823876.1\|1076835_1077135_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_012304335.1\|1077255_1078749_+	hypothetical protein	NA	NA	NA	NA
WP_038824831.1\|1079015_1080422_+	hypothetical protein	Q8SBG8	Shigella_phage	1.2e-17	34.2
WP_002208850.1\|1080418_1081474_+\|tail	tail protein	M1PVV2	Vibrio_phage	1.3e-37	27.2
WP_002215460.1\|1081489_1082086_+\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_002208848.1\|1082082_1082538_+	hypothetical protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_011192005.1\|1082541_1083678_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.5e-31	30.5
WP_011192006.1\|1083674_1084277_+	YmfQ family protein	A0A2P9JZK7	Alteromonadaceae_phage	2.0e-33	38.6
WP_011192007.1\|1084373_1085090_+	hypothetical protein	NA	NA	NA	NA
WP_012304333.1\|1085091_1085511_+\|tail	tail assembly protein	F1BUK2	Cronobacter_phage	1.4e-06	33.9

DBSCAN-SWA_4

2149185 : 2207845

Tupanvirus(18.18%)

coat,protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038825304.1\|2149185_2151573_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_011192546.1\|2151586_2152570_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	7.6e-35	38.5
WP_123767024.1\|2152886_2152967_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_002211833.1\|2153068_2153425_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_002211834.1\|2153462_2153660_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_002227898.1\|2153756_2154308_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.6e-16	33.7
WP_002211836.1\|2154311_2156240_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-127	37.1
WP_002216696.1\|2156630_2156843_+	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	9.9e-09	42.0
WP_011192547.1\|2157152_2157530_+	hypothetical protein	NA	NA	NA	NA
WP_086026472.1\|2157601_2157886_-	hypothetical protein	NA	NA	NA	NA
WP_002211840.1\|2158171_2158855_+	MarC family NAAT transporter	NA	NA	NA	NA
WP_002216686.1\|2158976_2159639_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_002227896.1\|2159847_2160819_+	iron/manganese ABC transporter substrate-binding protein YfeA	NA	NA	NA	NA
WP_086026471.1\|2160916_2161729_+	iron/manganese ABC transporter ATP-binding protein YfeB	A0A1V0SKJ1	Klosneuvirus	9.4e-07	26.0
WP_038825302.1\|2161728_2162613_+	iron/manganese ABC transporter permease subunit YfeC	NA	NA	NA	NA
WP_038825300.1\|2163593_2163782_+	hypothetical protein	NA	NA	NA	NA
WP_002211846.1\|2163806_2164682_+	fructosamine kinase family protein	NA	NA	NA	NA
WP_002211847.1\|2164810_2165365_-	yfeABCD regulator yfeE	NA	NA	NA	NA
WP_002220277.1\|2165775_2166441_+	hexitol phosphatase HxpB	NA	NA	NA	NA
WP_150352096.1\|2166625_2166958_-	cupin domain-containing protein	NA	NA	NA	NA
WP_012105015.1\|2167293_2168130_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_002210830.1\|2168221_2168983_+	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-20	32.9
WP_038825299.1\|2169327_2170989_+	pectate lyase	NA	NA	NA	NA
WP_002210832.1\|2171004_2171895_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_002210833.1\|2171887_2172808_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_002210834.1\|2172821_2173949_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.6e-12	26.5
WP_038825298.1\|2173964_2175257_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210836.1\|2175554_2176265_+	porin	NA	NA	NA	NA
WP_002210837.1\|2176744_2177293_+	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	4.0e-09	32.9
WP_010981403.1\|2177490_2178888_+	L-cystine transporter	NA	NA	NA	NA
WP_002210839.1\|2179102_2179954_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	1.3e-11	28.8
WP_002210840.1\|2180338_2181130_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_011192552.1\|2181316_2182483_-	oligogalacturonate lyase	NA	NA	NA	NA
WP_002210843.1\|2184251_2185055_-	molecular chaperone	NA	NA	NA	NA
WP_038823813.1\|2186138_2187101_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.7e-23	28.6
WP_072080779.1\|2190290_2191070_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_012105009.1\|2191171_2191714_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_012304008.1\|2192246_2192435_+	hypothetical protein	NA	NA	NA	NA
WP_002210847.1\|2192370_2193252_-\|protease	protease HtpX	NA	NA	NA	NA
WP_016582765.1\|2193705_2195778_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	4.0e-86	34.8
WP_002210849.1\|2195797_2196511_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_002210850.1\|2196606_2197104_-	GAF domain-containing protein	NA	NA	NA	NA
WP_038824888.1\|2197335_2198583_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_038401478.1\|2198551_2201203_+	PqiB family protein	NA	NA	NA	NA
WP_038824887.1\|2201680_2202235_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216613.1\|2202240_2202771_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216611.1\|2202791_2203349_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_038824886.1\|2206855_2207845_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044064

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection