CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044101	Citrobacter werkmanii strain FDAARGOS_616 chromosome, complete genome	2 crisprs	csa3,DEDDh,WYL,DinG,cas3	0	1	5	0
NZ_CP044100	Citrobacter werkmanii strain FDAARGOS_616 plasmid unnamed1, complete sequence	0 crisprs	csa3,DEDDh	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044101_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044101_1

2467593-2467716

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044101_1

>merge|NZ_CP044101|1|2467593-2467716|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAATATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP044101|1|1|2467593-2467716|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAATATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044101.1\|WP_121528998.1\|2465742_2467350_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP044101.1\|WP_150344987.1\|2474542_2475037_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|226429
NZ_CP044101.1\|WP_121528992.1\|2457961_2459170_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|379187
NZ_CP044101.1\|WP_121528993.1\|2459212_2460688_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP044101.1\|WP_069324206.1\|2477198_2477594_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|223329
NZ_CP044101.1\|WP_038640326.1\|2455509_2455983_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|377824
NZ_CP044101.1\|WP_150344984.1\|2469347_2471132_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP044101.1\|WP_069324208.1\|2475436_2476078_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|377981
NZ_CP044101.1\|WP_038640354.1\|2477819_2478128_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP044101.1\|WP_087856341.1\|2476202_2477171_-\|threo-3-hydroxy-L-aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|235918
NZ_CP044101.1\|WP_121528996.1\|2463275_2464280_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP044101.1\|WP_087856342.1\|2478167_2478959_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP044101.1\|WP_121528994.1\|2460794_2462057_+\|4-aminobutyrate-transaminase	unknown	unknown	gnl\|CDD\|182078
NZ_CP044101.1\|WP_121528991.1\|2456065_2457958_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|379192
NZ_CP044101.1\|WP_121528995.1\|2462233_2463289_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562
NZ_CP044101.1\|WP_121528997.1\|2465015_2465738_-\|solute-binding-protein	unknown	unknown	gnl\|CDD\|270259
NZ_CP044101.1\|WP_150344986.1\|2472596_2474525_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP044101.1\|WP_079224361.1\|2464276_2465029_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP044101.1\|WP_137347227.1\|2468124_2469129_-\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183400
NZ_CP044101.1\|WP_150344985.1\|2471250_2472360_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701

Protein	Function_ID	Function_description	E-value
NZ_CP044101.1\|WP_121528998.1\|2465742_2467350_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP044101.1\|WP_150344987.1\|2474542_2475037_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|226429	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown].	2.41353e-52
NZ_CP044101.1\|WP_121528992.1\|2457961_2459170_+\|cytochrome-c	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	7.32235e-10
NZ_CP044101.1\|WP_121528993.1\|2459212_2460688_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.44764e-137
NZ_CP044101.1\|WP_069324206.1\|2477198_2477594_-\|RidA-family-protein	gnl\|CDD\|223329	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis].	1.84136e-39
NZ_CP044101.1\|WP_038640326.1\|2455509_2455983_+\|polyketide-cyclase	gnl\|CDD\|377824	pfam07366, SnoaL, SnoaL-like polyketide cyclase. This family includes SnoaL a polyketide cyclase involved in nogalamycin biosynthesis. This family was formerly known as DUF1486. The proteins in this family adopt a distorted alpha-beta barrel fold. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalyzing intramolecular aldol condensation.	1.1173e-18
NZ_CP044101.1\|WP_150344984.1\|2469347_2471132_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	7.27635e-57
NZ_CP044101.1\|WP_069324208.1\|2475436_2476078_-\|transcriptional-regulator	gnl\|CDD\|377981	pfam08348, PAS_6, YheO-like PAS domain. This family contains various hypothetical bacterial proteins that are similar to the E. coli protein YheO. Their function is unknown, but are likely to be involved in signalling based on the presence of this PAS domain.	3.33461e-45
NZ_CP044101.1\|WP_038640354.1\|2477819_2478128_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	3.07741e-60
NZ_CP044101.1\|WP_087856341.1\|2476202_2477171_-\|threo-3-hydroxy-L-aspartate-ammonia-lyase	gnl\|CDD\|235918	PRK07048, PRK07048, threo-3-hydroxy-L-aspartate ammonia-lyase.	0
NZ_CP044101.1\|WP_121528996.1\|2463275_2464280_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.00936e-85
NZ_CP044101.1\|WP_087856342.1\|2478167_2478959_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.81209e-63
NZ_CP044101.1\|WP_121528994.1\|2460794_2462057_+\|4-aminobutyrate-transaminase	gnl\|CDD\|182078	PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.	0
NZ_CP044101.1\|WP_121528991.1\|2456065_2457958_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|379192	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.	6.13917e-07
NZ_CP044101.1\|WP_121528995.1\|2462233_2463289_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	9.52168e-83
NZ_CP044101.1\|WP_121528997.1\|2465015_2465738_-\|solute-binding-protein	gnl\|CDD\|270259	cd13541, PBP2_ModA_like_2, Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.10674e-84
NZ_CP044101.1\|WP_150344986.1\|2472596_2474525_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.9786e-107
NZ_CP044101.1\|WP_079224361.1\|2464276_2465029_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	2.34462e-81
NZ_CP044101.1\|WP_137347227.1\|2468124_2469129_-\|tryptophan--tRNA-ligase	gnl\|CDD\|183400	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.	0
NZ_CP044101.1\|WP_150344985.1\|2471250_2472360_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	3.82785e-40

>NZ_CP044101.1|WP_121528998.1|2465742_2467350_-|FAD-NAD(P)-binding-protein
MNKIAIVGTGPTGIYTLLALLKHQTPLSISLYEQSNEAGVGMPYSDEENSRLMLANIASIEIPPITSSYLDWLRQQSVEHLARYGVKHASLHDRQFLPRILLGEYFRDQFLRLVDLADKQGFNITVHESCQVKDVKATTDGVVICSDHNDPEHFDLAVIATGHVWPDAQSASRTFFPSPWTGLMEAKIPACNVGILGTSLSAIDAAMAVVAQHGRFVLDDAQGVHFERNEGSQDLNILLMSRSGILPEADFYCPLPYEPLSIVTAEALEQCIAVGSAGLLDRIFMLIVKEIELADPVWSKEVALSSLNADSFTDVWFAARKKHDPFHWAAANLEEVERNKREKHTVAWRYAILRLHEAVQEIVPWLDEKDRERFNNGLARVFIDNYAAIPSQSIRRLLALREAGILNIRALGQDYQLEQKEKMTVIRAQGETYKFDVFIDARGQKALKIKDLPFPSLRDQLQSTSEEIPDVGDDYTLQAPDIVRGRIALAALPWLMHDQPFVQGLTACAEIGQCVAQAISRPATRLRRRLPYYEA
>NZ_CP044101.1|WP_121528997.1|2465015_2465738_-|solute-binding-protein
MSSSITLLAAGSLRPALTPLITHFTHISGIDVKVEYGPAGLLRERIEAGEPCALFASASQEHPQRLLAQHKALSTHTFCWNQLGLVTNRTGEWLDLLRNPTLRIGTSTPGCDPSGDYTWAFFDKMDALERGLGQQLRERAIPLVGGRDTVRIPQGELASAWVLRQGLADLFIGYAHYAKTLRTLPNVRYVAIPAEYNIQCEYQLALLEASKDALALVEFMLGNGGQEFLIAAGFIPLTDE
>NZ_CP044101.1|WP_079224361.1|2464276_2465029_+|ABC-transporter-ATP-binding-protein
MKSVALRVNRLTYGYRAPLFEPLTFSCRKGEVWAVLGRNGLGKSTLLDTLTGTLPALGGSIENAGGIGIVAQHCHLPFPYTVSDVVLMGRAQHVKLFAQPSQQDQKRAAQALEQLNIAHLGACSFGSLSGGQQQLVMIARALVTECQTLLLDEPCSALDLANQQVVLQLISDLARQQGCSVLFSTHDPLHALQIATHTLLLLPEGKWRAGPTDSIVTEDNLSQAYGLPLRKVNVDHYQTPFIAPLFSIRR
>NZ_CP044101.1|WP_121528996.1|2463275_2464280_+|iron-ABC-transporter-permease
MQLSNRILPQQPLLMAAVLLLGVSSLCLGQYPLSLSEVFYHLTHYSDAEGIASQIVWTVRLPRILIALLAGGALGLCGATLQGVFHNPLVDPHIIGVTSGAAFGGTLAILLGLSPWLMMGSTFFFGLTALILVYAIATLQGLENTLVLILSGIILSGFFAALVSLIQYQADTEETLPNIVFWLLGSFATANWHKVLLLAIPVGIAATVLYQLRWRINLLSLNDKDARALGVAVVPLRRSVLVCCAFLVAAQVAVSGSIAWVGLVIPHLARLLVGVDHRRLLPCAFWLGGGFMIVVDDIARTLMPAEIPLGIITALFGAPLFAFLLIRNSRRRKQ
>NZ_CP044101.1|WP_121528995.1|2462233_2463289_+|ABC-transporter-substrate-binding-protein
MLTLRSFVLVCASFLVAFSAQAERTITDQLGRQITIPDHVDKVVVLQHQTLNILVQLNAQQDIVGVMSSWKKQLGPEFARFMPKITTLPTPGDLTSVNIESLLAIHPQVVFVANYAPAEMIQQIQNAGIPVVAISLRQDADGQQNKMNPTMADEEQVYNEGLKQGIRLIADVVGRKAQAETLIDYVFAARAKFNAPVANIPDAQKVRIYMANPDLMTYGSGKYTGLMMQHAGGLNVAAASVKGARQVALEQVLAWNPQVIFVQDRYPQVVTEIQNDPNWQGIDAVKNHRIWLMPEYAKAWGYPMPEALAIGELWMAKKLYPDAYKDVDVDAQAQDYYQRFYRVNWQSDAAK
>NZ_CP044101.1|WP_121528994.1|2460794_2462057_+|4-aminobutyrate-transaminase
MNNKNLQQRRLDATPRGVGVMCDFYAQSAENSTITDIEGNQYIDFAAGIAVLNTGHRHPRLVQAVEAQLQAFTHTAYQIVPYESYVSLAEKINAVAPIDGKRKTTFFTTGAEAVENAVKIARAHTGRPGVIAFGGGFHGRTYMTMALTGKVAPYKKGFGPFPGSVYHAPYPSELQGVSTADSLKAIERLFKADIDPTQVAAIIFEPVQGEGGFVVAPSEFVAGIRRICDEHGIVMIADEVQSGFARTGKLFAMDHYADKADLMTMAKSLAGGMPLSGVVGKAEIMDAPAPGGLGGTYAGNPLSIAAAHAVLDIIRDEQLCQRAAALGEQLRATLTDAQGWCPELAEVRGLGSMVAAEFCDAATGEPSAAVAHRVQKKALEQGLLLLTCGQYGNVIRFLYPLTIPQDQFAKALDIIKAATK
>NZ_CP044101.1|WP_121528993.1|2459212_2460688_-|PLP-dependent-aminotransferase-family-protein
MRSLAGDVIKQAFSQQTDEKLHRRLYAAICSCILEGSLKPATRMPPSRDLAGELTLSRNTVLRVYEQLQAEGYISARTSSGTFVSDSVLDNLDLRPNKEPVAVALEDHTRLSARCLELLGHASASPRQWGAFIPGVPDVQHFPHRVLKKIQDRLARRLRPAFLTYDAAGGVSELKEALADYLRTARGVRCSPDQILITEGIHQALDLVTRALCNPGDSAWIEEPGYWGIKNILRINAVHFSAIPVDEQGMIPPGPTEPAPKLIFVTPSHQYPLGSVMSLSRRQQLLLRARETRSWIIEDDYDSEFRFSGQPIPSLQGLEEETPVIYIGTFSKTLYPALRLGYVVLPKPLAAPLKKVHNDLYRGGHLLIQAALAEFIREGYYAAHIRKMRQLYSRRRQMLVELITRQLGEQYLGSFSSNAGLHMILQLPAGSDDVAIARQANAQDLLVRPLSRYYVNEEKCSGLLLGFASIEEHEMAAAFTRLATIIRENAV
>NZ_CP044101.1|WP_121528992.1|2457961_2459170_+|cytochrome-c
MRNVTVLAACLFTATVSAAETHGEYIARISDCVACHTTEGGAAMAGGKKFPTPLGDIYSTNITPDKTQGIGSYAYEDFEKAVRQGIAKDGHPLYPAMPYPSYAKLSDEDVQALYRYFMHDVTPSAQPNKENAIPWLLSARWPLHIWNWLFTDAPETAVASAKTDENAVLLKRGAYLVEGPGHCGSCHTPRGVAMNEKAYSNADPEYLSGAMIDGWYAPSLRGTGMSESELKSLLLTGKSKHAAVSGSMAEVVTQSTQYLTDEDATAIAQYLLSLKSTKPEAGRTAGTTTSWSNSAEAGKVTYNRYCSTCHGLEGKGTDDNAPSLIRNPLVMVDDPTPLYRVIAYGAETPTTQGSVSFKMPAYGGMLTDSEMRDVINYVRKSWGEGNGEVSQEDLAGVKKASH
>NZ_CP044101.1|WP_121528991.1|2456065_2457958_+|NAD(P)/FAD-dependent-oxidoreductase
MAITRRDFLNGVAVTVAAGLTPLEWVRAAGKENAFIDGSYYPPALTGLRGNHPGSFEMAHAVGREHKHFDLNTLPIEEEYDLVIVGGGISGLAAGCFWRQLAGQNSRILILDNHDDFGGHAKRNEFTSSGKKLLGYGGSEAFQSPAHNFSPEVQKLMETVGVSVTRLKESFDVNFYPDWQLSRGVFFDKKNFGETKIVSGDPGRAVSDDIPPDRLNGRKIEDFINDFPLSENDRKALTDLHVRPADYLPGMTIDEKTEWLDTHSYSEFLATKVGLSKMALLYFQQRSNDFFAIGIEGISCSDARACALPGMEALGLPPLDGESLADLEEPYVYHFPDGNAGLARLLVRYMLPDALPGTTMEDSVLARLHYEKLDLPENTTRLRLNSTVINAANVPDGVVVSYLRDGKMHRVRGKNTIMAGYNMLIPYLVPEMPEQQQADLKLNVKAPLVYTNVVVKNWQAFKQLGVHEFYSPAAPYSRVKLDYPVSIGGYQHPASPDDPMVIHMVYVPTYPGSNLSAREQFRLGRAYLLGTTFAAHEEMIRAQLQEMFGATGFDNQRDIAAITVNRWAHGYAYYPNSLFDDMDKMPEIIERARKPVGRIAIANSDSDWGAYAHTAIDQAWRAVNELKEMG
>NZ_CP044101.1|WP_038640326.1|2455509_2455983_+|polyketide-cyclase
MKTLKVAVLSLVMLSGYSLAESTSLNTVNEYMAAWNAHDASRAAQYLADDAVYYDAAAGEPITGREKAEKEVIGAFIKAVPDLTWKMIGKPVYDEDTVAFRWQFSGKNSGEWAGSPPTNNLIRFEGVSYIHVKAGKITWQGDYYDSKKLDEELKPVK
>NZ_CP044101.1|WP_137347227.1|2468124_2469129_-|tryptophan--tRNA-ligase
MNNKTIILTGDRPTGPLHLGHYVGSLRQRATLQYDYQQFILVADLQGLTDNGSTPQKIQNNIPEVLADYLAAGIDPSLTTICLQSALPALAELTALYMNIVTVARVERNPTVKNEIAQKGFARSLPVGFLVYPISQAADISAFKAEVVPVGDDQLPMIEQTNEIVHKMNSLLPAPVLSHCKALLSETSRLPGIDGNAKMSKSLGNTILLSASEETIHRAVSAMYTDPNHLKVSDPGQIDGNIVFTYLDAFHPDKIKVAEMKAHYQRGGLGDRACKNELEMCLQELIAPMRERRATYIQDKGMLMAMLKKGSEQAHEVTQQTLREVKQGLGLPVF
>NZ_CP044101.1|WP_150344984.1|2469347_2471132_-|diguanylate-cyclase
MRIATITNWAYSATVCLTIASGVVMLMASNADNTERQVVEQRYKFDQLTEEVELDAWSLSDMARLYVVSKDPDALNNYRQKEASLKAVEHRLAALKDAGATGEELALLHEGLQIVDALQDEQTAALASVARGEHTQAIALLFSKTYEQELERAQDRIDHFRQLLDNRVLNAIEDATQASRTLRTASEVMVGLTALLFLFVLGFILKRRVLRPVVRLSDVVNRLASQDYAVETPSFNQIDEIGDMAQAIRIFRENGLARQRLEKERDADWGIRELLARMTQRLQGCESFADVINVAELFAPNIAPGIAGRLYILDREPWQMRCVAQWLSPEGKADAFHPDECWAVRRGQSHPPVQDEPDIACYHLPESCQRQTLCVPLIAQGEAIGLLSFQNLSEDSTSSRAYLELMAEALGLALANQRLRDALLEKALYDPLTGLRNRHHLEDTLRTQMSQAVRTQEPISCLMIDIDHFKNINDRFGHEAGDSVIKSIAAIIQRVVHDSGMAFRYGGEEFLVLLAGADEQAANSFATDIYNGVRELSLRFGVSDIGHVDVSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSFGMLEAS
>NZ_CP044101.1|WP_150344985.1|2471250_2472360_-|AI-2E-family-transporter
MRFNGLTKGFFIFILALVTWAFFDVLSPYFSAILWAAILTTIFNPVKNRLRSALGERNGLASLITIAIICVIVFIPLMVILSSLAIELNVVYNKLQQNDTQFPEVVTSILSYLPGWARGFLAEHNLDNVAEIQKKLSDIVLQGGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLKDGPYLVRQILDSLPLSDFAKQHLFAKFVGVTRATVKGTAVVALVQGILGGIAFAIVDIDGSVLWGALMAFLSLVPAVGSAIVWVPAAIFLFATHQLWQGLFIVGFFVIIVGLVDNILRPLLVGKDTKMPDYLILITTLGGMEIYGINGFVIGPLIAALFITCWNLFSGRDHAGNVEGIDEAFMEEGKNPPDL
>NZ_CP044101.1|WP_150344986.1|2472596_2474525_-|EAL-domain-containing-protein
MNRILAGIIFFLFISTGYISFLVHERQQELQKLTHYTDSWSAAQMVSQYYRFESLLGLYTIDETMGLDEVRLRLDIMLSQSDLIKEGDLGHYIASNQAHSELALKLENTLNYLDVNLEKMNRSELQAYLKKMHALDSQLGRLSSGALNKDVNSINNANLKIQTLYYIYSATSVLLIILSAILGVLIFFQNRNILRAHLQVKSLAEELQNSKEKLQIQNAKLEYDVYHDSLTDMNNRQFFWGNLNQTIEMAEKNNDSVTVMLFDLDRFKEVNDTYGHDAGDILLRQISDRLISMSHTSDTLYRLGGDEFAFLSSGLTESQAVSRAQKICDFISQPYTIYNTIINITTCVGIVISETERRSDYLYKFADLALYEAKNEGSGKIKVFRQWMLEKLQESRTLEHDMAMAIVNKEFVVYYQPIVDSFSREIYSYEALIRWVHPLKGLLSPDSFIPVAEKTGMINEMGKFVLEIACTEAASWTIPAKISVNVSPVQLSSKAFAGIVLTILKETGLPAQRLELEVTESSIFTESNTPMNTLNKLRALGVKISIDDFGTGYSSLSRLSRLAFDKIKIDKSFVHSLSTQDDALNIIKLITGMAKSLNMKAVAEGVETQEQLEKLQALGCDFAQGYLFGKPQPGIDGKIRHG
>NZ_CP044101.1|WP_150344987.1|2474542_2475037_-|molybdopterin-dependent-oxidoreductase
MRLFVMLLSLVVSTQLWAGELSKPTGKVLLTVSGNIENTNEDGKATFDTASLEKLGMVSFQTTSPWYNGRTTFSGIPLQKLMDFVGAKGTVVKVTALNDYTTVIPLNDFKKYNVILALKINGKYMQIRDKGPLFIVYPYDSISELNNQIYYSRSAWQVSRMDIE
>NZ_CP044101.1|WP_069324208.1|2475436_2476078_-|transcriptional-regulator
MPKTDNNSLLSQLDTIARGLSETFSPFCEVVVHDLKKPEHAILSIHNNLSGRKPGQPATELGLARIASPDFPSIIANYSNQFADGRPVKSTSIGIKDEDGKYVAALCLNVDMTLFRGIQSALAQFTETEDSPIKEHIDPGSNEVIRQRIDDFAAKRATTARALKPEDRKLLIQQLRKEGLLNVRKSMDTVAQHLGVSRATAYLYARQSAHMRD
>NZ_CP044101.1|WP_087856341.1|2476202_2477171_-|threo-3-hydroxy-L-aspartate-ammonia-lyase
MTDMTLPDYNDIVAAAERIADYANKTPVMTSRTVNEEFGAEVFFKCENFQRMGAFKFRGAMNALRQFTPQQRAAGVVTFSSGNHAQAIALSAKLLGIPATIIMPHDAPAAKVAATKGYGGNVVIYDRYTEDREKIGQDLAEKQGLTLIPPYDHPHVIAGQGTATKELIEEVGPLDVLFVCLGGGGLLSGSALAARHLSPDCVVYGVEPEAGNDGQQSFRSGNIVHIDTPKTIADGAQTQHLGQYTFAIIQQNVNDILTVSDTELVTAMKFIAERMKIVVEPTGCLGFAAARARKSELQGKKIGIIISGGNVDISRYGELLAG
>NZ_CP044101.1|WP_069324206.1|2477198_2477594_-|RidA-family-protein
MSPDITLNASPGSFPPAGHYSHSTTAGGFVFISGQLPVTLDGEKKADASFEEQTRLALQNVDACLAGAGVSRQHLVSVRVYVTDINQWPTFNRIYGEWIGDFRPARAVAGVAELHYGFAVEIEAMALAPQA
>NZ_CP044101.1|WP_038640354.1|2477819_2478128_-|monooxygenase
MSNKLVQIHFNFHGPFGAEMSQQLVELAESINQEPGFIWKIWTENEANHEAGGIYLFQDQDSAQAYIKKHTARLKHLGVEEVFFKIFDINEPLSKINHGHIG
>NZ_CP044101.1|WP_087856342.1|2478167_2478959_-|PhzF-family-phenazine-biosynthesis-protein
MQQIDFYMVDAFSTTTFAGNAAAVCPLTDWLPDETLLKMAQQHNQSETAFFVANDNGFELRWFTTQGEINLCGHATLAAAHVIFEHLDYPDTTIHFATRFVGPLMVTRSGEWLTLDFPAWQSEPVVPPALLLEALGIAEYKEVRVGRDYMVVLEDQHQVEAVRPNIHAMVPLGKMVCITAPGDGEYDFVSRFFCPGEAVAEDPVTGSAHSMLIPYWAAKLNKTEMLARQVSERGGDLRCQLADSRVYIGGQATTYLTGKVLLR

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Crispr_ID: NZ_CP044101_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044101_2

3879537-3879646

Orphan

Consensus_repeat	Method
TTAAAAAAAGGTGGTACAGGGTGGGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044101_2

>merge|NZ_CP044101|2|3879537-3879646|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACAAGTGGTACACGCAGGGCTGGCGCGGGTTACAGCGTCCCACCTTAAAGAATTTGGTTTAAAAAAAGTGGTACAGGGTGGGACA

>NZ_CP044101|2|2|3879537-3879646|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACA	AGTGGTACACGCAGGGCTGGCGCGGGTTACAGCGTCCCACCTTAAAGAATTTGG
TTTAAAAAAAGTGGTACAGGGTGGGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044101.1\|WP_150345335.1\|3883045_3884026_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
NZ_CP044101.1\|WP_150345327.1\|3875177_3875690_-\|molecular-chaperone-Tir	unknown	unknown	unknown
NZ_CP044101.1\|WP_150345324.1\|3868978_3871165_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
NZ_CP044101.1\|WP_150345334.1\|3882674_3883049_+\|PTS-sorbitol-transporter	unknown	unknown	gnl\|CDD\|226254
NZ_CP044101.1\|WP_150345326.1\|3874187_3874832_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044101.1\|WP_150345331.1\|3880995_3881247_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP044101.1\|WP_150345332.1\|3881366_3881639_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP044101.1\|WP_150345322.1\|3856260_3867501_+\|type-I-secretion-C-terminal-target-domain-containing-protein	unknown	unknown	gnl\|CDD\|375438
NZ_CP044101.1\|WP_150345336.1\|3884036_3885050_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP044101.1\|WP_150345339.1\|3887002_3887845_-\|cytoplasmic-protein	unknown	unknown	gnl\|CDD\|284075
NZ_CP044101.1\|WP_020801525.1\|3877198_3877414_+\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP044101.1\|WP_150345329.1\|3877449_3879519_+\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
NZ_CP044101.1\|WP_150345325.1\|3874096_3874186_+\|integrase	unknown	unknown	unknown
NZ_CP044101.1\|WP_150345323.1\|3867572_3868982_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP044101.1\|WP_150345588.1\|3886439_3887003_-\|6-phospho-3-hexuloisomerase	unknown	unknown	gnl\|CDD\|132171
NZ_CP044101.1\|WP_150345338.1\|3885780_3886416_-\|3-hexulose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|132172
NZ_CP044101.1\|WP_150345328.1\|3875832_3876669_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044101.1\|WP_150345337.1\|3885489_3885696_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044101.1\|WP_150345333.1\|3881768_3882044_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675
NZ_CP044101.1\|WP_150345587.1\|3871172_3872336_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902

Protein	Function_ID	Function_description	E-value
NZ_CP044101.1\|WP_150345335.1\|3883045_3884026_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	3.91932e-176
NZ_CP044101.1\|WP_150345324.1\|3868978_3871165_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP044101.1\|WP_150345334.1\|3882674_3883049_+\|PTS-sorbitol-transporter	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	9.6323e-46
NZ_CP044101.1\|WP_150345338.1\|3885780_3886416_-\|3-hexulose-6-phosphate-synthase	gnl\|CDD\|132172	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.	3.019e-95
NZ_CP044101.1\|WP_150345331.1\|3880995_3881247_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.852e-12
NZ_CP044101.1\|WP_150345332.1\|3881366_3881639_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.09012e-14
NZ_CP044101.1\|WP_150345322.1\|3856260_3867501_+\|type-I-secretion-C-terminal-target-domain-containing-protein	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	4.9947e-22
NZ_CP044101.1\|WP_150345336.1\|3884036_3885050_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.46616e-67
NZ_CP044101.1\|WP_150345339.1\|3887002_3887845_-\|cytoplasmic-protein	gnl\|CDD\|284075	pfam06560, GPI, Glucose-6-phosphate isomerase (GPI). This family consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (EC:5.3.1.9).	2.58728e-88
NZ_CP044101.1\|WP_020801525.1\|3877198_3877414_+\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	8.76711e-22
NZ_CP044101.1\|WP_150345329.1\|3877449_3879519_+\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
NZ_CP044101.1\|WP_150345323.1\|3867572_3868982_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.30365e-114
NZ_CP044101.1\|WP_150345588.1\|3886439_3887003_-\|6-phospho-3-hexuloisomerase	gnl\|CDD\|132171	TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.	1.33199e-79
NZ_CP044101.1\|WP_150345333.1\|3881768_3882044_+\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	8.92099e-38
NZ_CP044101.1\|WP_150345587.1\|3871172_3872336_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.05422e-97

>NZ_CP044101.1|WP_150345329.1|3877449_3879519_+|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRAWRKDPDREDDVPPVVLGPDELADLDNLTIIRPNTLYVRVLRTGDIHEEELLKIAVKLAHADVQMARLMSPDGELLEDWSGQLARLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQSQRICSPLRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTYISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPGGDNVILQGSHYLTGGFAQGGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTECAGERLYAGMDVRMVQIPSDTGQHGAFEQLHGFASGQQFADALCDQVARFHGTAFRAWLAFLTSDQDASTTLARELLRRYQTALMPDNAGNQVQRIVARFALLAVAGEMATLHGITGWQEGTAYEAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMVGFRRVEKDPLTGEEHTLFHILPEGWREMCRGFSPARAARLCQEAECLLPGSDGKYQSQVRLPEIGKARVYRLTSRILSI
>NZ_CP044101.1|WP_020801525.1|3877198_3877414_+|AlpA-family-transcriptional-regulator
MKTRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRTAIR
>NZ_CP044101.1|WP_150345328.1|3875832_3876669_-|hypothetical-protein
MLKVNFFDRKVRAIFYKYATGITGAIAAIVLFWDIPAKYKNPAGIVCGIILFVIYIIIWIVSNKIKSIDLTVDGSTVTIKSGDIFAEQGFKVIAFNEYFDTQVDDKIIAYHSLNGLFVTEHLSCTVEELDNHIQQYPFSRDDVLDFKYERLSGKKQKYELGTICVWEDYLLTAFSKFNDFNEARLTMPEYLEFLINFWDRVNRVYAQKSVSVPIFGSGITRIKEHKNITDEDLLKIMLWTFRISEMRFTHPAKLTIIIHKDKIDKINLFDLQSARNGL
>NZ_CP044101.1|WP_150345327.1|3875177_3875690_-|molecular-chaperone-Tir
MVYRTKTYIAGEWDGDQEAIQQLHAWNDSNYWSLSFTDAHDLTQARDSSLNCSIKSSLATRLNASKTFVLVVGNNTKTARSGSCRYCSSYNSYSGYCARGNSVDHRSYIEYECDKALRDGLKIIVLYNAASVNKAKCPDSLRNAGTHTAMCYYDKGNYYWDYLAVKTALS
>NZ_CP044101.1|WP_150345326.1|3874187_3874832_+|hypothetical-protein
MTSPIRQNLFERECDMPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPPEIKARSLKAVMKLSRNSRGRKWLKTLGDDALPDLTASAQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTPDKPASDRILRKLKTLVQEREVPSDGLGRGTFYEVLKMGREKKL
>NZ_CP044101.1|WP_150345325.1|3874096_3874186_+|integrase
MQWWGNYVDAARRQVLLGAEEPLRIVEGE
>NZ_CP044101.1|WP_150345587.1|3871172_3872336_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MDDLDIRREHHFSGANRIILLSTLLFAVLGIWAYFGKLDEVSTGSGKVIPSSREQVLQSLDGGILAELTVREGDKVQANQIVARLDPTRSESNVGESAARYRASLASSARLNAEVNDLPLTFPDSLRAWPDLIASETRLYKSRRAQLADSMAELQDALVSVNKELAITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYFVQAREALSKANAEVDMLAAILKGREDSVTRLTVRAPMRGIVKNIQVTTIGGVIPPNGEMMEIVPIDDHLLIETRLSPRDIAFIHPGQRALVKITAYDYAIYGGLEGVVETISPDTIQDKVKPEIFYYRVFIRTHQDYLENKLGRQFSIVPGMIATVDIKTGEKTIADYLIKPFNRAKEALRER
>NZ_CP044101.1|WP_150345324.1|3868978_3871165_+|type-I-secretion-system-permease/ATPase
MSDVDSHAEEAIGEQALSQWAQAMTYIASHYRVACSPGAIQANAPWFAGKNRTLALTQLARQAGLSFHALDTTKQAFSQWRLPVVAELRDGQIMVLEHFNGDDALDVFIIAEEGQRNRLTVAELVPEIVSITALRPLSALKDSRVDRYISRFKPDWMRELVLQDIRPYLPVMVAAFLINVLSLAGIIFSMQVYDRVIPAQSYPTLYVLSTGVLVAVLFGFLLREARTHIMDLLGKRADMRISDRVFSHALRLRNSAVPRSTGSFISQLRELEQVREMITSSTMSTIVDLPFFFLFIVVLACIAPPLAWIAPVAALLMILPGLLLQKKLAVLANQAAHESTLRNAVLVESVQGLEDIKLMQAENRFLQQWNSYIRITGESGLRTRKLTQGLIGWGMSVQSLVYAAIIMFGAPMVIEGTMTTGAVVAASMLGSRMIAPMANLCGVLARWQQVKAAKMGLDSIMQLPTETQYDEDRVHQEILHGHYLFENAHFRYHSDDQRVPLRISRLEIMPGERIALLGRNGAGKSTLLQAMAGGVEIIQGEVRLDNLSLAQIDMADLRRNIGFLSQNARLFFGTLRENLTLGAPHASDAQIFEALEVSGAAAFVKQLAKGLAHPIMEGGNGLSGGQRQSILLARMLLRSPNIVLLDEPSASLDEHTEREFIQRLNLWLGNRTLIVATHRVPVLELVERVVVLKEGQLVMDAPKAQALSASRAAVPTHGREWKNENQSA
>NZ_CP044101.1|WP_150345323.1|3867572_3868982_+|TolC-family-outer-membrane-protein
MGKVMPVALLLALTLCSMRVNAEDEPQVITPEGLANSQMLPSLDGSVADLPLSPAAPGTLTLNDAVSRAVSWHPSIRESIGKLLSQNEQIDVAKSKYYPQVTAGMNNGYSNTYTDHGFSPALVISVSQMLYDFGKVASQVRAETAGSAQQQANVLLSIDTIAHATANAIVQVQTWQQMVDAAEEQLSALNDIGRLTRQRNDEGATSLSDVVQTDARIESARSQLAQYQANLDSSKATLMSFLGWNSLNGISNEFPGKLDSSCDVVKPDDKLVPAVLAAWAQANVAQANLDYANAQMTPTISLEPSVQHYLNDKYPSHEVLDKTQYSAWVKVEMPLYQGGGLTARRNAASHAVESAQYSIQRTRLEVRQKLLESRSQAMSLATALQILRRQQRLSEQTRELYQQQYLDLGSRPLLDVLNAEQEVYQARFAELQTQNQLRQLQLNCLYNTGSLRQAFALNNRSIQSVEIQL
>NZ_CP044101.1|WP_150345322.1|3856260_3867501_+|type-I-secretion-C-terminal-target-domain-containing-protein
MRLLAVVSKLTGVSTNVEASEITLNSPSIVKLSVSREEVSQLTRVNQDLVVTLRSSETITIKNFYVGKGDAQNQLVLEDSNGALWWVQDTDGAFHFQHLDDLTPLMTAEGSHDGGAIWPWVLGGVAVAGGIGLAAGGGGGGGGGSGGSGGSDNNAGNGNGSGGNGNAGNGNGNGGSGSGDGDNGAPPTTTPNMPDMPVITSVIDDQELITGLVNQQESTNDNTPELQGTGPANATLHIFDNGVEIGQVTIDANGHWSFTPSSPLADGTHQFTVSASNNAGSSGMSDSWVIIVDTLAPDTPVVTQEIDNVGSITGLIANDGETDDATPTLTGTGEAGSTISIYDNGILIGMEPVDDNGNWTFTPDTPLSDGVHNLTLTQTDAAGNVSAETSLPTFTVDTTAPAGAVISAVNLEGTTVTGRAEAGSLVTIIGSNSQVLGAITVDQTGNFVIAISPSQTHGEALLAKIQDKAGNIGPDTPFYATNSGYPGVPVIVSVMDDAAPSIGLLSNNQATNDQTPTLSGTADANSTVNIYNNGTIIESVVADANGNWSWTSATPLPEGPHAFSATATNQLGTGGMSPTFNISIDIQPPSPPDDLSVSADGSVVTGTAEPGNTVVITDSNNTPIGSGVAGEDGSFTIPITPPQTNGETITAIATDPAGNPSQPETTLAPDITAPQPPANLIINPTGDQVTGTAEPNSTVHILDPDGAIIGTATAGPSGDFTATLVPPQTNGERLNANATDAAGNTSGNTPITAPDTTAPDAPTGVIVAGDGGSVSGHAEAGSTVTVKDSNGNQIGVGQADNGGNFTVSITPSQMNGETVKVTATDSNNNESLPTSALAPDITAPNQPIIVAVTDDVADVIGPISNNGLTNDDKPKLEGTAEAGAQVKIYDNGELLTTVTADLNGNWNYTPTTALTQGAHIFTVTATDAASNTSSAASWKIIVDSLAPTVPVITLINDDVGSITGSVANNGWVTNDNTPTISGTGEPGSLVSLYDGSLLMTVMLVDSTGTWSYTVPANQALSDRIHQFTVSATDAAGNVVTSSTVVSVTVDTQPPGNPVILTATDDVGNAPIDLSTGSRSNDTLPLLKGTGTAGSTITLYDGATSIGSTTVLPDGTWSIQLSQPLSEGPHSLSAIATDVAGNASNPGNFTLTIDTTPPPAPVISSAEGLIGTTLQTLSNGGSTKSTTPELSGTGEPGATITLYDNNVFLGTTTVQPNGSWTYTPTGPLPDGPHKFTATATDVAGNTGIPSAGFTLTVDNLPPAKPEPPTITDDVNPMTGIITNGITNDTTPTFSGTGNPGDLISIYLDGNTSPLGTATVGADGSWSFTPTSPINPDNYQVTLTATDPAGNVSLRSDAVALGIDTTPSAPPVIIAANDNVGDVQGDVAANGVTDDTTPTIRGTGTDGDTITLYNGGTVLGTATVVGGTWSITPGTALTNGSYTLIATATDPAGNISDSSNSISFTVNNTKLTLPLVTDIQDNVGVFTGSLTSGSVTDDTMPTISGTGTPGSTVLIYDGTTTPIATTIVAANGSWSVEVPLTPNATHTLTFGAQDGAGNVLAADNPLTLIVDTQPPAIPVVTSVDPDGTKVSGTAEIGSTVIIRSGNTVLGQGVADILGNFTVTISPAQTTGQALTAIAQDPAGNQSDPAPFNAAISNVPHPPTLEIVDDIAPIMGVIGNGKTTNDTLPLLQGTATAGATVNIYIDGVLQSPPVIADTVSGAWSYQLPTALTNGTTYNFTVSQTVGGITSGLSPNYAITIDTTAPQVPTITSIIDDVAPGTGSLDKGQITNDSRPTFNGTGEAGATITLYDKGVAYATTTVNSNGFWSFTPTDPLGEGDHLFTARATDAAGNQGDPSSDFRIIVDTLAPDAPSIVTVTDNVGTTQTLTSGQLTNDNTPTLAGTTEADSVVTIRDNGAVIGTTTSDENGNWSFTPAPALGEGSHSLTASVTDGAGNISPATPPFVVVVDTLPPAAPVITSVIDDQPGNTALTNGQLTNDALPTLNGKGEIGAIITIRDNGSDLGTTQVDASGNWSFTPETPLGQGQHIFTAVATDRAGNTGGVSSSFTIELDSIAPSIPVISTVQDNTAPTTGPITNGQTTNESRPALSGTGEVGATITVLSDGQPIGTTTVGANGTWSLTPTAALSNGPHTLTVTATDSAGNTSPPSNGFALIVDTVLPGTPVITQVADDVGPATGNLNNGQATNDTQPTLNGTAEANSTVKIYDNGTFIGSTTADGTGAWSFTPPALGNGNHALTATATDAAGNVSPASAGFNIVVDTVAPLAPTIIQAFDDVLPGTGTLSNGAFTNDTRPLLNGSAEAGARVAIYDNGTLLATVTAAIDGTWEYLPATLGNGQHVFTAIATDAAGNVSPASSGFTINVDTLAPTTPILVSVVDDVAGGVFNAVLSNGQLTNDARPTLNGTAEAGSTVSIYDGSTLLGTALVQSNNSWSFTPTTPLASGSHTFTVTATDAAGNTSGATAGFSVVVDTTAPTLPAISSIIDDVGPNTGAIGNNQPTNDARPTLTGTTEANARIDIYDNGIFVVSVTADGSGNWSYTPPTELAQGPHSFTITATDSAGNTSGTSAPAAIVVDTVAPGIPGGLSVNATGTTLTGVAEPNSTVIITSNGGTVLGTATANASGNFTFTLNPPQISGQTLLVSAQDAAGNIGTAGNVLAPFTGVPPAPVIASVFDDVGSVTGLVTAGKTTNDTLPTLSGTAQASAVVRLYNNGVFMGATTADGNGLWSFTPTGALSEGNHAFTATATNANGTSGLSGSFSVIVDTTPPSAPTILISADGGTVSGVAEAGSTVTISLPGGTSVTAIANSSGVYSVNLPVRQIEGQSLSATATDAAGNTSSPTSVIAPVLPLLAEDNITRLPLQTDVIVSTEHKSDYGFLLVNALGNVANVLGDDTATVNFNIASGGSGSITINAAATGVVLSLLNTLEIVIQRFDSSLNAWVTVVDTGLPNFASLLTLGASGVTLNYSGLTGGDYRVVSYNTNLLATGSYTSLDVAVVKSSAGTIIGGTTESGNIITDIDPTNGQDNAPSGTLVTSVTDGNGNIVSVPAGGIDVQGKYGILHINQNGSYTYTLTNTSISVYGRSESFTYTLTHGADSSSAKLVVTLGQPPATSTVTAADDIAALTYGTQVIAIDNGTSKQTGFTLVNVGLGNVLDVSLVNGLTNPIKFNVDDGATRTLTVQANVLGVTVGGFDLYIYRFNESIQQYEQFRVKPNWVTAVLAGGSTEYTITLPGGDYLFLLNASGGLALATTYTLDIKTDHTYAVDSLSASTNGNLLVNDSAPANTVITEVNGVAVNGTGITTINGQYGTLTIDAKGNYTYTLKSGLGADGINTPDSFVYKVRAPNGDTGSASLNITATPQALDAVNDISPQMAVTTQADTSRSFTDNSVGNASWNAQLLSATSQNGTGTIEVAAGTAVQNAILHFNVASGLTLGGLTVTWTLYDSNNVKVTNGSFNGGLLVGGNIDIALSGIVLHSGNYRLDYTGSVGALGLGNITITPSVKGTIIDLQNFETSAANSVTGNIYDGDHIASVHTLLTVNGTGGSTATLDPLGNTTSAIINGLYGKLTIGIDGHYTYALNSDVSLASITTKETFNYTLNDQQGHTDTATLTIDMNPQVVSTVDADRLTGSAYGDTLIYHLLNANNATGGNNSDSWTNFSMAQGDKIDIHELLSGWNHQASTLGNYVQVTTNGSNTVIAIDRDGTGGTYQSTNLITLENVNTTLNELLQNNHLITGG
>NZ_CP044101.1|WP_150345331.1|3880995_3881247_-|helix-turn-helix-domain-containing-protein
MIPKRLKEARLRAKLTQEKLGVLAGIEEATAYSRLSHYENGTHKPTFELVCEFARVLDVPECYFYIRDDCFAMKVLELYLSDK
>NZ_CP044101.1|WP_150345332.1|3881366_3881639_-|helix-turn-helix-domain-containing-protein
MVPKRLRIARELADMSQEELAIAAGISEETGYSRMSHYENGRHKPKFELVCRFAEVLNVPEGYFYTLDDSFADTMLKLYGGKRVQWKRYV
>NZ_CP044101.1|WP_150345333.1|3881768_3882044_+|transcriptional-regulator
MAKKDWHPADIVAALHKRGTSLAKLSREAGLASSTLANALSRPWPKGEWLIAIALDVHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>NZ_CP044101.1|WP_150345334.1|3882674_3883049_+|PTS-sorbitol-transporter
MMTYRAHIVAVGVFVADGLTDKMLITFDSNGPKDCLDYSLSLETLLREESLFILPGDTLLLAGFSYLITAVGKGAQQALFELGHLTMKFDGGLNAFHPGVVHLSGPLPALASLHGELVIAEGRP
>NZ_CP044101.1|WP_150345335.1|3883045_3884026_+|PTS-glucitol/sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEIVNGFASIPPDEELLCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFINEDNYVSGVTMEQLVLVDTAEAPDGEPESVPVAAPRVITTPPPPHGAEKLVRMVEKTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>NZ_CP044101.1|WP_150345336.1|3884036_3885050_+|Gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDAERCDDLAMAYGVIGYTRLETLLEEEAIDVVSVATPDPYHTESILTALRHGKHVLAEKPLATSVRECELIVEMAQQRGLLVGVDFHKRWDPAVMRIKAELEKPETGQILRGHISMDDVITVPTQWLNWAGASSPVWFLGSHCFDLVRYLSGQEVVSVYAVGQKQLLDVYGIDTHDSVQNLLTMADGSSWVVENSWVLPEGFPKDNDGRIEILSGTMYIRSTSQHRGLEITTPDKTLTPNSYFINYRNGIASGFGIDPINDFVRAVRNRSPYPVMAEDGLAVSRICEAVHRSLESGKPENI
>NZ_CP044101.1|WP_150345337.1|3885489_3885696_+|hypothetical-protein
METEHEAINIALTIENGVVTNVRQIRKDEHIASLDTFLWIVKRTGYEVIPPQENTQNPENIKVLAEVE
>NZ_CP044101.1|WP_150345338.1|3885780_3886416_-|3-hexulose-6-phosphate-synthase
MKLQLALDELTLPEALVFIDKVVDDVDIIEVGTPFLIREGVKAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKARRKSRIAVAGGITSLTVKDYALLGPDVVIVGSAITHSADPAGEARKISQVLLQHH
>NZ_CP044101.1|WP_150345588.1|3886439_3887003_-|6-phospho-3-hexuloisomerase
METQSVAGVACSDLHQAMARIDGAALARLEQAIAEANAIFVFGAGRSLLMLKALAMRLMHIGLKVHVVGDVVTPALQKGDLLLLASASGETASLVNVATKAKQLGGTVALLTIFPESTQGKLADVVVRIPAYTDKLPDGPDNVKGILPGGSLFEEAVMVLGDSMIVNLAQSTGYRLTKGFALHANLE
>NZ_CP044101.1|WP_150345339.1|3887002_3887845_-|cytoplasmic-protein
MKQLHHSGLPLYLDDDGVMALKLPLNYLGFGRKSAGQMAVVLPEFTEAQRDEPAYDVYRGLSFAEDQERLTADQYQYDITIIMPGTIGKERKKTSGHYHGYNDTRRNTHPEVYEVIKGTAAYILQKSPDFAVAPKDLLVDDLIVAVVKEGQSIIVPPNYGHCSINIGDGPLVFSNLAYKPCAVHYDTVQFYHGMACYIVEENGQLCVRKNHYYPHIPHIKFATVKENPHLGITFDTPLYQRYRAAPERFHFLGHVDNYVREIMGMLEYQDDLFPLCQEDA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044101_1	1.1\|2467636\|38\|NZ_CP044101\|CRISPRCasFinder	2467636-2467673	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	3	0.921

1. spacer 1.1|2467636|38|NZ_CP044101|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 3, identity: 0.921

cggacgcaatatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******. ****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

500572 : 507520

uncultured_Caudovirales_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085049570.1\|500572_500851_-	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	3.3e-12	50.0
WP_085049571.1\|501397_502018_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_085049572.1\|502168_502867_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.8e-89	68.1
WP_038636209.1\|502952_503273_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	2.9e-20	45.7
WP_038636211.1\|503317_504607_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.2e-168	71.1
WP_069325169.1\|504619_505045_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	4.7e-50	71.4
WP_121529819.1\|505148_505808_+	LysE family translocator	NA	NA	NA	NA
WP_150344498.1\|505871_506462_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_150344499.1\|506710_507187_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_085951602.1\|507346_507520_-	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	6.8e-08	50.0

DBSCAN-SWA_2

1909670 : 2002667

100

Salmonella_phage(59.32%)

plate,tail,integrase,capsid,transposase,lysis,portal,terminase,tRNA,head

attL 1938210:1938233|attR 1972883:1972906

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150344829.1\|1909670_1910612_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	5.2e-65	50.2
WP_150344830.1\|1910660_1911410_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_137347390.1\|1911409_1912645_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_121528812.1\|1912820_1913609_+	DUF4111 domain-containing protein	NA	NA	NA	NA
WP_069323360.1\|1913798_1914764_+	beta-aspartyl-peptidase	NA	NA	NA	NA
WP_069323224.1\|1914750_1916622_+	glutathione ABC transporter ATP-binding protein GsiA	G9BWD6	Planktothrix_phage	2.8e-14	27.2
WP_150344831.1\|1916650_1918189_+	glutathione ABC transporter substrate-binding protein GsiB	NA	NA	NA	NA
WP_069323225.1\|1918235_1919156_+	glutathione ABC transporter permease GsiC	NA	NA	NA	NA
WP_150344832.1\|1919158_1920070_+	glutathione ABC transporter permease GsiD	NA	NA	NA	NA
WP_003831616.1\|1920124_1921432_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_137347396.1\|1921652_1921850_+	glycine cleavage system protein T	NA	NA	NA	NA
WP_150344833.1\|1921902_1924353_+	glycogen phosphorylase	A0A140XAG6	Dickeya_phage	1.3e-22	74.6
WP_121528816.1\|1924384_1925311_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_038639191.1\|1925531_1925915_+	biofilm formation regulator BssR	NA	NA	NA	NA
WP_150344834.1\|1926017_1927115_+	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA
WP_121528818.1\|1927120_1927747_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_032940149.1\|1928076_1929279_+	serine-type D-Ala-D-Ala carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.7e-97	47.1
WP_085049174.1\|1929327_1930086_-	DNA-binding transcriptional repressor DeoR	A0A077SK06	Escherichia_phage	7.4e-14	29.8
WP_038639201.1\|1930149_1930758_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_150344835.1\|1931054_1932287_+	MdfA family multidrug efflux MFS transporter	NA	NA	NA	NA
WP_085049175.1\|1932314_1932596_-	hypothetical protein	NA	NA	NA	NA
WP_087857578.1\|1932704_1933520_-	HAD family hydrolase	NA	NA	NA	NA
WP_150344836.1\|1933519_1934728_-	MFS transporter	NA	NA	NA	NA
WP_069323233.1\|1934813_1935362_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_150344837.1\|1935367_1936282_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_150344838.1\|1936384_1937299_+	EamA family transporter	NA	NA	NA	NA
WP_150344839.1\|1937312_1938110_-	SDR family oxidoreductase	NA	NA	NA	NA
1938210:1938233	attL	NA	NA	NA	NA
WP_048233327.1\|1938307_1939360_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	2.3e-106	55.9
WP_048233329.1\|1939442_1941140_-	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	1.9e-81	68.0
WP_150344840.1\|1941160_1941757_-	hypothetical protein	A0A1S6KZZ7	Salmonella_phage	2.0e-38	43.4
WP_004201303.1\|1941852_1942074_+	regulator for prophage	NA	NA	NA	NA
WP_048233334.1\|1942106_1942616_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.7e-78	87.6
WP_000956168.1\|1942623_1942824_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	3.2e-33	100.0
WP_000963480.1\|1942787_1943129_+	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	2.1e-56	100.0
WP_150344841.1\|1943196_1943430_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.4e-33	97.4
WP_048233339.1\|1943429_1943657_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	2.8e-33	89.3
WP_048233341.1\|1943653_1944508_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	1.2e-140	87.7
WP_048233343.1\|1944504_1945503_+	DNA cytosine methyltransferase	A0A0M3ULA1	Salmonella_phage	6.4e-98	55.7
WP_150345571.1\|1945520_1947899_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	96.1
WP_001154444.1\|1948057_1948246_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.7e-26	100.0
WP_019077494.1\|1948257_1948491_+	DinI family protein	A0A1S6L014	Salmonella_phage	1.1e-32	90.9
WP_150344842.1\|1948564_1948825_+	hypothetical protein	J9Q7T5	Salmonella_phage	1.5e-19	60.3
WP_087052927.1\|1949073_1950465_+	hypothetical protein	NA	NA	NA	NA
WP_150344843.1\|1950492_1951524_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	1.9e-182	91.2
WP_150344844.1\|1951523_1953290_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	95.1
WP_001528599.1\|1953432_1954266_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	2.7e-126	94.2
WP_079893545.1\|1954282_1955347_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.9e-193	98.0
WP_079893544.1\|1955350_1956001_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	1.1e-114	99.5
WP_063886531.1\|1956094_1956559_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	7.1e-84	97.4
WP_000868184.1\|1956558_1956762_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000171565.1\|1956765_1956981_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_019077486.1\|1956961_1957471_+	lysozyme	A0A1S6KZY9	Salmonella_phage	3.2e-93	97.6
WP_001528673.1\|1957475_1957853_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.4e-58	96.0
WP_001528739.1\|1957852_1958278_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	2.7e-66	97.2
WP_079894835.1\|1958373_1958805_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.1e-74	96.5
WP_046669932.1\|1958797_1959244_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	4.2e-65	88.4
WP_079894836.1\|1959312_1959891_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	2.2e-106	96.4
WP_079894837.1\|1959887_1960247_+\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	2.6e-57	94.1
WP_079894838.1\|1960233_1961142_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	9.5e-149	93.7
WP_001397640.1\|1961134_1961740_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	4.6e-115	98.0
WP_150344845.1\|1961736_1963218_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.9e-175	65.7
WP_079893914.1\|1963227_1963689_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	2.1e-43	59.4
WP_079893915.1\|1963742_1964348_-\|tail	phage tail protein	A0A218M4J2	Erwinia_phage	1.8e-47	47.7
WP_150344846.1\|1964420_1964942_-\|tail	phage tail protein	Q9MCR6	Enterobacteria_phage	2.1e-31	52.1
WP_053264365.1\|1965011_1965569_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	2.9e-84	85.2
WP_045334072.1\|1965652_1966825_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.0e-211	93.8
WP_032266119.1\|1966834_1967350_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	3.9e-91	98.2
WP_032266118.1\|1967404_1967707_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	5.7e-42	93.9
WP_000763315.1\|1967721_1967841_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_150344847.1\|1967833_1970578_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	2.3e-121	37.5
WP_000980407.1\|1970574_1971060_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.7e-65	97.7
WP_150344848.1\|1971056_1972157_+	phage late control D family protein	E5G6Q3	Salmonella_phage	1.6e-187	93.7
WP_058842448.1\|1972224_1972440_+	late control protein B	Q53ZE7	Salmonella_virus	3.6e-22	70.8
WP_150344849.1\|1972467_1972815_+	hypothetical protein	NA	NA	NA	NA
WP_038639225.1\|1973050_1974736_-	aspartate:alanine antiporter	NA	NA	NA	NA
1972883:1972906	attR	NA	NA	NA	NA
WP_061388467.1\|1975005_1975386_+	hypothetical protein	NA	NA	NA	NA
WP_016152408.1\|1975420_1975684_-	glutaredoxin, GrxA family	A0A2I7SAE2	Vibrio_phage	5.0e-26	67.9
WP_085049182.1\|1975859_1976150_+	YbjC family protein	NA	NA	NA	NA
WP_150344850.1\|1976133_1976856_+	nitroreductase NfsA	NA	NA	NA	NA
WP_038639233.1\|1976913_1977816_+	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	8.2e-36	34.0
WP_038639236.1\|1977906_1978383_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_038639239.1\|1978816_1979929_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_069323238.1\|1980067_1981201_+	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_069323239.1\|1981210_1982164_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_038639247.1\|1982160_1983006_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_038639250.1\|1983065_1983554_+	YbjO family protein	NA	NA	NA	NA
WP_150344851.1\|1983738_1984866_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	1.6e-28	27.7
WP_032939929.1\|1985610_1986288_-	isochorismatase family protein	NA	NA	NA	NA
WP_150344852.1\|1986304_1987165_-	pirin family protein	NA	NA	NA	NA
WP_069323241.1\|1987273_1988185_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002211347.1\|1988266_1988485_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_038639268.1\|1988770_1989475_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_069323242.1\|1989519_1991241_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	9.6e-17	24.0
WP_150344853.1\|1991241_1993008_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	1.6e-22	25.3
WP_003831889.1\|1993122_1994091_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.9e-62	44.3
WP_002439523.1\|1994638_1995133_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_150344854.1\|1995267_1999206_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.8e-88	49.2
WP_150344855.1\|1999317_1999929_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_150344856.1\|1999939_2001283_+	AAA family ATPase	G3MBE0	Bacillus_virus	1.9e-81	41.3
WP_003035737.1\|2001374_2002667_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.3e-94	46.1

DBSCAN-SWA_3

2372168 : 2382210

Bodo_saltans_virus(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150344968.1\|2372168_2373152_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-33	42.6
WP_137347197.1\|2373167_2375555_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003030571.1\|2375559_2375859_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_042308812.1\|2376014_2376995_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	6.7e-15	25.1
WP_038640185.1\|2377055_2377607_+	glutathione peroxidase	NA	NA	NA	NA
WP_038640187.1\|2377606_2378356_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	1.6e-08	28.2
WP_038640189.1\|2378433_2378898_+	endopeptidase	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
WP_038640192.1\|2379216_2379930_+	EAL domain-containing protein	NA	NA	NA	NA
WP_150344969.1\|2379991_2381434_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	2.4e-53	37.1
WP_137350530.1\|2381430_2382210_-	heme ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.0e-10	26.6

DBSCAN-SWA_4

3254823 : 3263938

Bacillus_phage(28.57%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085047912.1\|3254823_3256227_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	2.7e-33	29.9
WP_038641831.1\|3256223_3256946_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	9.2e-30	32.7
WP_150345189.1\|3257111_3258473_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	4.8e-205	93.2
WP_038641840.1\|3258741_3261018_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.8e-165	42.1
WP_006683877.1\|3261048_3261369_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
WP_003036813.1\|3261692_3261917_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
WP_150345190.1\|3261991_3263938_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	4.8e-41	41.8

DBSCAN-SWA_5

3304658 : 3313079

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150345203.1\|3304658_3306692_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.2e-53	27.6
WP_038641935.1\|3306898_3307357_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.3e-50	68.6
WP_087856170.1\|3307401_3307872_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.3e-64	78.2
WP_038641937.1\|3307918_3308638_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_150345204.1\|3308634_3310320_-	GAF domain-containing protein	Q9EYF3	Enterobacteria_phage	1.3e-281	91.8
WP_042307362.1\|3310545_3311277_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.0e-105	92.5
WP_003027354.1\|3311328_3311436_+	protein YohO	NA	NA	NA	NA
WP_085047889.1\|3311416_3312148_-	ABC transporter permease	NA	NA	NA	NA
WP_085047888.1\|3312131_3313079_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	1.2e-08	26.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP044100

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

21636 : 51149

Salmonella_phage(22.22%)

transposase,integrase

attL 35000:35017|attR 40980:40997

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001138071.1\|21636_24609_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.0
WP_001162012.1\|24611_25169_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_122973921.1\|25206_25500_-\|transposase	transposase	NA	NA	NA	NA
WP_000845048.1\|25468_26482_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_003830721.1\|26642_27158_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_003830719.1\|27351_27684_+	quaternary ammonium compound efflux SMR transporter QacG2	NA	NA	NA	NA
WP_003155741.1\|27888_28512_-	recombinase family protein	E5FFF9	Burkholderia_phage	3.7e-35	43.7
WP_003830790.1\|28573_29791_-	TniQ family protein	NA	NA	NA	NA
WP_003830789.1\|29787_30696_-	AAA family ATPase	NA	NA	NA	NA
WP_003830788.1\|30698_32378_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	2.2e-05	25.7
WP_003830786.1\|32685_34197_+	MFS transporter	NA	NA	NA	NA
WP_003830785.1\|34207_34774_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
35000:35017	attL	NA	NA	NA	NA
WP_003830784.1\|35352_36195_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003830783.1\|36312_36846_+	hypothetical protein	NA	NA	NA	NA
WP_077203601.1\|37317_37848_+	hypothetical protein	NA	NA	NA	NA
WP_003830781.1\|37699_37963_+	hypothetical protein	NA	NA	NA	NA
WP_003465017.1\|38146_39031_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003830779.1\|39126_40854_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	2.8e-08	25.3
WP_000993245.1\|41034_41247_-	DUF3330 domain-containing protein	NA	NA	NA	NA
40980:40997	attR	NA	NA	NA	NA
WP_001446012.1\|41209_41329_+	hypothetical protein	NA	NA	NA	NA
WP_001087807.1\|41312_41549_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277466.1\|41545_41911_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000209296.1\|41928_43614_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_000522996.1\|43652_44078_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|44105_44381_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294654.1\|44396_44777_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|44848_45304_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000110156.1\|45401_46379_+	hypothetical protein	NA	NA	NA	NA
WP_001135406.1\|46452_46941_-	hypothetical protein	NA	NA	NA	NA
WP_001247114.1\|47195_48311_+	DNA-binding protein	NA	NA	NA	NA
WP_003830765.1\|48303_49167_+	hypothetical protein	K7RFY5	Vibrio_phage	1.1e-26	35.4
WP_000429587.1\|49219_49615_+	hypothetical protein	NA	NA	NA	NA
WP_000176304.1\|49611_50223_+	DUF2913 family protein	NA	NA	NA	NA
WP_000728912.1\|50219_51149_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.9e-75	52.8

DBSCAN-SWA_2

70680 : 85573

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000697973.1\|70680_71361_+	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	1.9e-32	36.5
WP_001230590.1\|71353_72832_+	Cu(+)/Ag(+) sensor histidine kinase	W8CYF6	Bacillus_phage	1.8e-27	31.0
WP_000725002.1\|73068_73500_+	hypothetical protein	NA	NA	NA	NA
WP_000695683.1\|73648_73999_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	2.4e-20	55.2
WP_003830762.1\|74170_75997_-	AAA family ATPase	E5E3R2	Burkholderia_phage	1.5e-12	23.2
WP_000817638.1\|76604_77810_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.7e-206	90.5
WP_000756331.1\|77806_78778_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	9.6e-115	68.9
WP_000457553.1\|78923_80195_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.7e-157	64.2
WP_000600201.1\|80194_80617_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
WP_000334635.1\|80796_81468_-	DNA breaking-rejoining protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.5e-79	59.5
WP_000085947.1\|81819_82497_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.9e-29	37.4
WP_001104877.1\|82496_82718_+	hypothetical protein	NA	NA	NA	NA
WP_000274510.1\|82728_83148_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_003830760.1\|83201_83981_+	hypothetical protein	NA	NA	NA	NA
WP_000108571.1\|84385_84892_+	antirestriction protein	A0A1I9S7Y0	Rhodococcus_phage	3.7e-09	29.8
WP_000761848.1\|84934_85126_+	hypothetical protein	NA	NA	NA	NA
WP_001667048.1\|85312_85573_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	5.3e-12	47.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044101

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP044100

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection