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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP044073 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence 3 crisprs csa3 0 3 0 0
NZ_CP044074 Pseudomonas oryzihabitans strain FDAARGOS_657 chromosome, complete genome 4 crisprs DinG,DEDDh,csa3,cas3,WYL,RT 0 0 4 0
NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 2 crisprs DinG 0 6 0 0

Results visualization

1. NZ_CP044074
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044074_1 272299-272396 Orphan NA
1 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044074_2 2148921-2149048 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044074_3 2432334-2432420 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044074_4 3338520-3338627 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1162556 : 1201980 49 uncultured_Caudovirales_phage(58.82%) integrase,protease,plate,tRNA,tail attL 1152457:1152474|attR 1185206:1185223
DBSCAN-SWA_2 2315659 : 2324254 9 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_3 3572698 : 3580981 7 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_4 3834267 : 3945107 94 uncultured_Caudovirales_phage(15.38%) plate,transposase,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP044073
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044073_1 96006-96098 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044073_2 96329-96420 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044073_3 96602-96701 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP044073_1 1.1|96029|46|NZ_CP044073|CRISPRCasFinder 96029-96074 46 NZ_CP044073 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence 96029-96074 0 1.0
NZ_CP044073_2 2.1|96352|45|NZ_CP044073|CRISPRCasFinder 96352-96396 45 NZ_CP044073 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence 96352-96396 0 1.0
NZ_CP044073_3 3.1|96625|54|NZ_CP044073|CRISPRCasFinder 96625-96678 54 NZ_CP044073 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence 96625-96678 0 1.0

1. spacer 1.1|96029|46|NZ_CP044073|CRISPRCasFinder matches to NZ_CP044073 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gtgaggaaaaaagcaggcatggcaatggtccatttcttagtactac	CRISPR spacer
gtgaggaaaaaagcaggcatggcaatggtccatttcttagtactac	Protospacer
**********************************************

2. spacer 2.1|96352|45|NZ_CP044073|CRISPRCasFinder matches to NZ_CP044073 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gagagaaaaaagcaaacatggaaatgatccatttcttagtactac	CRISPR spacer
gagagaaaaaagcaaacatggaaatgatccatttcttagtactac	Protospacer
*********************************************

3. spacer 3.1|96625|54|NZ_CP044073|CRISPRCasFinder matches to NZ_CP044073 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tcagcggctgaaaatggcctgctagtcgtcttaaaaaggtgactgcaggactaa	CRISPR spacer
tcagcggctgaaaatggcctgctagtcgtcttaaaaaggtgactgcaggactaa	Protospacer
******************************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP044072
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044072_1 47889-47993 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044072_2 48134-48442 Orphan NA
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP044072_1 1.1|47909|25|NZ_CP044072|PILER-CR 47909-47933 25 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 47907-47931 0 1.0
NZ_CP044072_1 1.2|47954|22|NZ_CP044072|PILER-CR 47954-47975 22 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 47952-47973 0 1.0
NZ_CP044072_2 2.1|48152|56|NZ_CP044072|PILER-CR 48152-48207 56 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 48151-48206 0 1.0
NZ_CP044072_2 2.2|48226|55|NZ_CP044072|PILER-CR 48226-48280 55 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 48225-48279 0 1.0
NZ_CP044072_2 2.3|48299|55|NZ_CP044072|PILER-CR 48299-48353 55 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 48298-48352 0 1.0
NZ_CP044072_2 2.4|48372|54|NZ_CP044072|PILER-CR 48372-48425 54 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 48371-48424 0 1.0

1. spacer 1.1|47909|25|NZ_CP044072|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcatcgcagcaatacttctcggtc	CRISPR spacer
gtcatcgcagcaatacttctcggtc	Protospacer
*************************

2. spacer 1.2|47954|22|NZ_CP044072|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tggccgtcctctaacctgctga	CRISPR spacer
tggccgtcctctaacctgctga	Protospacer
**********************

3. spacer 2.1|48152|56|NZ_CP044072|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

taggcgcagctagacacctattccgcggttcgagcacggtcaccgcccacccgata	CRISPR spacer
taggcgcagctagacacctattccgcggttcgagcacggtcaccgcccacccgata	Protospacer
********************************************************

4. spacer 2.2|48226|55|NZ_CP044072|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cccagccgctcagaccgatcactgcgagcctagaacacgtgtcggccatgcaatg	CRISPR spacer
cccagccgctcagaccgatcactgcgagcctagaacacgtgtcggccatgcaatg	Protospacer
*******************************************************

5. spacer 2.3|48299|55|NZ_CP044072|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcagcggtcagacccgctatgccgcaccaaagggatttctaaggtgggtgttg	CRISPR spacer
gtgcagcggtcagacccgctatgccgcaccaaagggatttctaaggtgggtgttg	Protospacer
*******************************************************

6. spacer 2.4|48372|54|NZ_CP044072|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

caaacgcctctcagcaggcctctcggtagcacgctacgctccctctgatcgatc	CRISPR spacer
caaacgcctctcagcaggcctctcggtagcacgctacgctccctctgatcgatc	Protospacer
******************************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage