CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044092	Stenotrophomonas maltophilia strain FDAARGOS_649 chromosome, complete genome	14 crisprs	cas3,WYL,PD-DExK,DinG,DEDDh,csa3,Cas9_archaeal	0	3	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044092_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_1

89138-89241

Orphan

Consensus_repeat	Method
CGGTAGTGCCGGCCGCTGGCCGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044092_1

>merge|NZ_CP044092|1|89138-89241|CRISPRCasFinder
CGGTAGTGCCGGCCGCTGGCCGGCAACGCCAACCAAGGTTGGCATCCACCAGAGCCGGGCCATGCATGTGAACGCAGGCGGTAGTGCCGGCCGCTGGCCGGCAA

>NZ_CP044092|1|1|89138-89241|CRISPRCasFinder
CGGTAGTGCCGGCCGCTGGCCGGCAA	CGCCAACCAAGGTTGGCATCCACCAGAGCCGGGCCATGCATGTGAACGCAGG
CGGTAGTGCCGGCCGCTGGCCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_099527725.1\|91676_92672_+\|YhdH/YhfP-family-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176183
NZ_CP044092.1\|WP_005410640.1\|89276_89462_-\|DUF2065-family-protein	unknown	unknown	gnl\|CDD\|225782
NZ_CP044092.1\|WP_049396062.1\|86832_87495_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_150359231.1\|81959_82499_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_150359233.1\|95534_97916_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|227289
NZ_CP044092.1\|WP_049459396.1\|97980_102888_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP044092.1\|WP_005410639.1\|87612_88905_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP044092.1\|WP_150359232.1\|86219_86897_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NZ_CP044092.1\|WP_005410644.1\|92760_93132_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_CP044092.1\|WP_005410634.1\|82513_82804_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_111198032.1\|81078_81819_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP044092.1\|WP_005410645.1\|93220_94114_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP044092.1\|WP_049459393.1\|85252_86215_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|341130
NZ_CP044092.1\|WP_005410642.1\|90389_91523_-\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|130988
NZ_CP044092.1\|WP_005410647.1\|94886_95462_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NZ_CP044092.1\|WP_099480891.1\|80577_81069_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP044092.1\|WP_005410646.1\|94374_94857_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
NZ_CP044092.1\|WP_049396059.1\|82893_85020_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP044092.1\|WP_005414177.1\|78464_80555_+\|catalase	unknown	unknown	gnl\|CDD\|236886
NZ_CP044092.1\|WP_005414169.1\|89529_90393_-\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_099527725.1\|91676_92672_+\|YhdH/YhfP-family-quinone-oxidoreductase	gnl\|CDD\|176183	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.95195e-163
NZ_CP044092.1\|WP_005410640.1\|89276_89462_-\|DUF2065-family-protein	gnl\|CDD\|225782	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown].	1.95241e-11
NZ_CP044092.1\|WP_005414169.1\|89529_90393_-\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	3.90151e-107
NZ_CP044092.1\|WP_150359233.1\|95534_97916_-\|penicillin-binding-protein-1C	gnl\|CDD\|227289	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane].	0
NZ_CP044092.1\|WP_049459396.1\|97980_102888_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP044092.1\|WP_049396059.1\|82893_85020_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.74043e-79
NZ_CP044092.1\|WP_150359232.1\|86219_86897_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.51541e-25
NZ_CP044092.1\|WP_005410644.1\|92760_93132_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.3106e-35
NZ_CP044092.1\|WP_111198032.1\|81078_81819_-\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	6.17083e-08
NZ_CP044092.1\|WP_005410645.1\|93220_94114_-\|DnaJ-domain-containing-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	1.98574e-74
NZ_CP044092.1\|WP_049459393.1\|85252_86215_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	8.96834e-27
NZ_CP044092.1\|WP_005410642.1\|90389_91523_-\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|130988	TIGR01933, Protein_HflK, HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (SS 8/27/03].	8.29771e-117
NZ_CP044092.1\|WP_005410647.1\|94886_95462_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	2.09173e-34
NZ_CP044092.1\|WP_099480891.1\|80577_81069_+\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	5.64655e-15
NZ_CP044092.1\|WP_005410646.1\|94374_94857_+\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	3.28546e-78
NZ_CP044092.1\|WP_005410639.1\|87612_88905_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP044092.1\|WP_005414177.1\|78464_80555_+\|catalase	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0

>NZ_CP044092.1|WP_005410639.1|87612_88905_-|adenylosuccinate-synthase
MGQSVVVLGAQWGDEGKGKIVDLLTEEIGAVVRFQGGHNAGHTLVINGKKTVLHLIPSGILRDDALCLIGNGVVISPAALQKEIAELEASGVEVRSRLKISPAAPLIMPYHIALDQARERAAGGKAIGTTGRGIGPAYEDKVARRGIRIADLHYPKQLEELLRTALDYHNFVLTKYLNTDAVDFQKTFDEALAFGEYVQPMKSDVAGILHDLRKQGKRVLFEGAQGALLDIDHGTYPYVTSSNTTVGGALAGSGVGADSIDYVLGIAKAYATRVGGGPFPTELDDEVGQGIRDRGAEYGASTGRPRRCGWMDIVALKRAVAINGISGLCITKLDVLDGMEKLKVCIAYEYNGKRTEYAPLDAQGWEECTPVYLEFPGWSENTHGITNWDDLPPAARAYLRSLEELAGCPISIVSTGPDRDHTMVLQDPFA
>NZ_CP044092.1|WP_049396062.1|86832_87495_-|hypothetical-protein
MKGETVVRITLWVLWSLWGIACLVLVLGAAANTLASRTQTVPLVLSPGATAQITVYRLIDDQLRLRLRYAADGTEADPEVLLRIETPTDHGDFRAGERSGVAGQGINRGLASVESSGLMASYFGYGRGDALPRGRSWVRLTVLEVDPALADRAATVELQPPLDLLKLTDLDYVWLWPFFFWKVAALLLLIPGAALAVFTFTLRRWQHRASKQADSAVDTD
>NZ_CP044092.1|WP_150359232.1|86219_86897_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MRLSQLIVLGVLLGLGAGWWLRRDAGEPVAASLPEAQPAAAVSPAKGSLAPLDTAPAPAATAPSAARTADAPSGLLLPVQGVLASQLRDTFTDARSEGRVHDAIDIMADAGTPVLAVADGTVEKLFDSERGGLTIYQFEPSGRWCYYYAHLQRYADGLAEKQVIKRGDVLGYVGSTGNASAEAPHLHFEVHVLGPEKQWWKGESINPYPLLNPPASKPGAASAAK
>NZ_CP044092.1|WP_049459393.1|85252_86215_+|L,D-transpeptidase-family-protein
MPLPVYRSTLLALSLLASPAFAQAPPPGLPAPIAEKAGPDTAARSALHAQVLLDRANFSPGQIDGEVGSNQRRAVSGFQAAHGLAVTGELDDATWQALQADTVTPLASYTLTSEDVAGPFQAVPKGPAAQAKLKSLGFNNVEESLGERFHASPELLKLLNPGVDLSKAGNRIQVPNVAPSPLPKAAKVVVDKSDSSLQLLDAQGKVIAQVPVSSGSQHDPLPIGEWKILGVYRDPPFHYNPKLFWDARKGEKKATLPPGPNNPVGRVWIDLSKPHYGLHGTPEPGHVGKTESHGCVRMTNWDALRVADAVDTSVPVVMQE
>NZ_CP044092.1|WP_049396059.1|82893_85020_-|methyl-accepting-chemotaxis-protein
MNYLRNVRVAWRLGLGFGLLLLLVAAVVATGATASVVQKRAMQQVVDVSVAKVRLLSQMLDANNQMMVVRREMLIRQGDDRGHDEQRIADLVKRYEASWTAYQALPSDAEGKAIAETIAAKRAIARPLNKQTSELMEQGDYPGAVALTLGPVQEAANGWNKALSDGVDFEEKESREAAAEAIRLGERSLLQLLVLGGVALLVGIGASVMIGRSLTGPLARAVNLAERLSRGQLDQEFRLGGRDELTQLGEAMASVRQSVQAAIGAQLQMAEQHEAGAIRYRMDASAFPGDFGRMVQATNSLVESHVQVELLMAEVMQRYAIGDLSRDLPDYPGEKGTLTRTLAAVKQSLMAINAQIDALARAARAGDFSMRGDAAAFQFQFKAMVEHLNGMMASSQASIADVSDVLRAISHGDLTARMDGEYDGVFARMRDDANTTTAQLTGIVRGIQVAADSINNAAQELAAGNNDLSRRTEQQAANLEEAAASMEELTSTVRQNAELARQADSEAHAAGAAVRETEQAMAQMASVMGEIDQSSARISEISTVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRAGVAAKEIKELIEDAAAKVKSGLAVTVESEAAIARVAQASSRTTQLMSDIAAASKEQAAGIEQVNQVVVQMDQVTQQNAALVEEATAASRALEEQAHALTTSVAVFKVEQGARMPIVPAQAA
>NZ_CP044092.1|WP_005410634.1|82513_82804_+|hypothetical-protein
MKMRRLLSWTGLALCVVYLLLTAWLVHGAQSDADPKGAYILMSLPITLQSAALDAIGAGSLLYGKPWSTAYAVLVPPTLLLLYAAGWLIERAARGR
>NZ_CP044092.1|WP_150359231.1|81959_82499_+|hypothetical-protein
MRWTYALAMMVMMLPLNSSASDGWINGAGKAMPETDAMKSSGGFAASLLVTSDADWRAKWETPPETTPGFTQADEVHPGGELFLLTFLSNPQLDENRVPKVHCDLRMLRPDGSTSIDERDVPCFTAALPGPPTLLYITNLHLKFVAEASDPKGTWTAQVVVRDLLRNVSLPLQAHFDVR
>NZ_CP044092.1|WP_111198032.1|81078_81819_-|alpha/beta-hydrolase
MGIGREEKPGCDSASPTPQHVLMLPGLDGSGRLSIPFLSALQAHGLTTQAITLPAQGGQDHATLAQRLWSQLPGHPFILLAESFSGPLAVELATRQPAGLRGLVLAATFARRPVPLPAASAALLTPAWPLPPVALLARLLLGRWRTREHLSMLRDALARIPAATLRQRAAATLRVDVRALLPAIDVPTLCLHACHDRLLWPPSVAELQALLPDARHVSLEGPHLLLQARADAAAAEVAAWMRTLSP
>NZ_CP044092.1|WP_099480891.1|80577_81069_+|hypothetical-protein
MPRGDKSAYSDKQKRQAEHIEESERERGASEGTAERIAWATVNKQDGGGKRSGSARKGTKKATSKTAAKKTPARKSGTKKATTKATAAKKAPAKKTTARKAAAKKAPARKTATKKTAKKTAAKKAGTAASRSAAAKKAAKTRAAKKAVRKVAAKKAARTRARG
>NZ_CP044092.1|WP_005414177.1|78464_80555_+|catalase
MAASKPTGKRATTHAENHHRGNGDELHQQAGGSHPAMTTDQGIPVADNQNSLRQGPRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFELTRSLKAHTRARILTEVGVKTPVFTRFSTVAGGAGSVDTPRDVRGFAVKFYTREGNWDLVGNNIPVFFIQDAMKFPDLVHAVKMEPDRAFPQAASAHDTFWDFISLMPESMHMIMWAMSDRAIPRSLRMIEGFGVHSFRLLNEAGESTFVKFHWRPKLGIQSTVWDEALKLQSADNDFHRRDLFEAIQRGDFPEWELAVQLFTEEDADAFPFDHLDPTKIIPESLVPLQVIGRMVLDRWPDNFFAETEQVAFCPANVPPGIDFSNDPLLQGRLFSYLDTQLLRLGGPNFHQIPVNAPKCPFANHQRDGHMQMQVPKGRVAYDPSSLQEDTPRETPAGFRSHASADDGRKGRTRAESFADHYSQARMFFRSLEKPEQAHLASALVFELSKVETLKVRVRTVSHLRNIDDSLAQRVADGLALPALPDPAPTATPVRDMPPAPEVRVIGRNKPTLQGRCIGILFDEGSDARIIASLSKAARKAGADVKLVAPRVGGATLSDGALQAADGQLAGTPSAVFDAVAVVLSPEAAKALSKESAAIEFVSQAWAHLKAIASDAGGQTLLKAARVGNDAGIVEAEDAKAFLAAAATRQWAREPKLRLLA
>NZ_CP044092.1|WP_005410640.1|89276_89462_-|DUF2065-family-protein
MKDLFAAVCLVAVLEGLFLFVAPFAWKRMAERLLDLPSPALRSFGGLVLLAGLSLLWWARH
>NZ_CP044092.1|WP_005414169.1|89529_90393_-|protease-modulator-HflC
MKSPIWIAVIVAVVLGLLGSVYVVREDQTAMVLNLGKVVRSDIKPGLHFKVPVVETVKVFDRRFQVLDTAPARYFTAEQKDVSVDFFAIGYISNVGDYFRATGGDPRIANARLAPIITDSLRNQINSRTLQQLVSGDRSELIAEQLKGINEAVAGLGMQMIDLRIKQVDLPTDSQVINDVYERMRAQRKQEAAKLRAEGEEQSLTIRAQADRDSTVLIAEAERDAQRLRGEGDAEAARIYGKAGSADPSFYAFYRSLEAYRGSMTDGNGVIVLDKNDPFLQYLKNDR
>NZ_CP044092.1|WP_005410642.1|90389_91523_-|FtsH-protease-activity-modulator-HflK
MAWNTPGGNKGGQGPEDNRRGPFGSRGGGNGGGWGGLPGPLKDLFDGGIVRWVVAAVVLLVLFSSFQLIGEQQRGVVLRFGQFSRILQPGPNFKLPWPIESVTKVNATEIKTFSIQVPVLTRDENIVNVSLNVQYRIDDPQQYLFGTVDANQVLEQSAQSAVREEVGRADLNAVLNNRGPLAVAAEERLQALLKAFKTGLTVTGLTLQDARPPEEVKPAFDEVNGAQQVKERLINEAQAYAAKVVPEARGQASRARTTAEGYKQAVVSKAEGDAQRFSLLQAQYKDAPEVTRKRLWLETVQQVLSENRKVIGGDGRQLIYVPMTGDTRPSTSAPAAVANPDVVMPSLPGAAAEASRDPGRPVGRPTGRPSGREEGSR
>NZ_CP044092.1|WP_099527725.1|91676_92672_+|YhdH/YhfP-family-quinone-oxidoreductase
MAPTTPFTAFRIENDDAGYRSGLVRLGVDDLNPGQVLIRAHWSSVNYKDALAGTGKGKILRRFPLVGGIDVAGTVVASTDPDWREGDAVLATGCGLSETRDGGYSQYVRLESRAVIAQPAGLTPREAMVLGTAGFTAALALLRMQDNRQTPELGPLAVTGASGGVGALALSIFSRAGYSVHAVSGKPDQAGFLRSIGATEVLPRDALADTGALQSGRFGGGLDNAGGDMLASLLAQTVPYGSVVSAGLAASPTLDMTVMPFILRGVSLLGVSSANAPRGLREEVWSRLGSDWKPQHLDRICTAEVGLDGLPAVFERMLAGGSLGRTVVRID
>NZ_CP044092.1|WP_005410644.1|92760_93132_+|response-regulator
MARILIVDDSPSQLLGIQRIVEKLGHQILTATDGAAGVETAKAELPDLVLMDVVMPNLNGFQATRTLARDEATRHIPVILVTTKDQDTDRMWGMRQGAKAYITKPFSEDELSEVLERVFAGQG
>NZ_CP044092.1|WP_005410645.1|93220_94114_-|DnaJ-domain-containing-protein
MEFKDYYATLGVEPSAGEAEIKTAYRRLARKYHPDVSKEAGAEDKFKAVNEAYEALRDPEKRAAYDQLRAQGYRPGEEFNVPPNYGGAGGFNFEEVFGGGGPNGGFSDFFESLFARQRGGAGAGAGPGFSSQGHAPNRDTRAKLSVPLEAAYSGDSLRITVNGKQLDVRVPKGIRPGQVIRLAGQGNHGGNLLLEVEYAAHPQFEVDGRNILYTLPLTPWQAALGTSISVPTLGGAVELKIPADSDAGRKLRLRGRGLPGNPDGDQIVEIEIVAPAATDEAQKKAYRNLAKAFGETI
>NZ_CP044092.1|WP_005410646.1|94374_94857_+|peroxiredoxin
MTIHVGDRIPEVTLKRIREGIETLDTHSLFDARKVVLFAVPGAFTPTCSARHLPGYVEKFEAFRQRGIDVYCMAVNDPFVMKAWAADQSVPDGLLMLSDGNAELTRALGLELDASASGMGIRSRRFALYVDDGVVREAWVEQPGQFEVSSAEYVLEHLPT
>NZ_CP044092.1|WP_005410647.1|94886_95462_+|bacterioferritin
MSSKPAKASKPAANVPGISDRATLRERARRNLEDGAITDSYSADREVVIKLLNDALATEYVCVLRYYRHYFMAKGMLADAVKAEFLEHAQQEQAHAGKLAERIVQLGGEPDLNPDTLTARSHAEYKEGSDLRDMVRENLVAERIAIDSYREMINFIGDRDTTTKRILEEILAQEEEHADEFADLLDGWIGE
>NZ_CP044092.1|WP_150359233.1|95534_97916_-|penicillin-binding-protein-1C
MKNTMTTRLAALRRRLQPLWPWLRWGTAATLALLLVLDFVFPPPLPKQRDTSTLVVAADGTPLRAFADAEGVWRYPASTDSVSPLYLQALLTYEDRWFWRHPGINPLAILRASGQLLRGGRIVSGGSTLTMQVARILDPHTRTPWGKLKQMLRAVQLEVHLSKQQILALYLERAPYGGTIEGVEAASWAYLGKPAAQLSHAEAALLAVLPQAPSRLRPDRHPEAAQKARDKVLSRMAELGAWTAEEAEDARIENVVARSLRPPLHAALLAQRLHSAHPGQARIQSSIDIGLQRTLEERVASYFSTLPERTSAALLVVDNQTLQARAYVGTLAFGDRQRLGHVDMVQAWRSPGSTLKPFLYAMALDDGLIHSESLLVDAPQSFGSYRPGNFDMAFNGPIGASSALRLSLNVPSVDLLQRVGPARFAARLSHSGIQLRFPPGSTPNLSLILGGTGARLEDLVGAFAALNRNGIAGRVRYTDDEPMIERRLASPGASWIVREMLESNPRPGYSVGTFDVGGRPRVAWKTGTSYGYRDAWAIGSTRHYTVGVWVGRPDGTPLPGQYGAVTALPLMFEVVDSLPRQRGDSAAAPMPASVSQEDICWPTGERAEGLPAALCQRLMPAYLLEGAAPPTFPEREARRWQPGRQRYLADARTGLRVSADCRLPHEEVAREIARWPALLSPWLSKATREASQLPALSPDCRDDGREASVALHIDGLNDGATLARAPNSEHGVRLQLRALGSEQAVDWLLDGRWIAQTRGAQLMQREFAEPGAHTLTALAADGAWTQVRFNVLR
>NZ_CP044092.1|WP_049459396.1|97980_102888_-|alpha-2-macroglobulin-family-protein
MSGPARRKRWGWAAAVLAGGLLLGLAGCRNDSGQLPKASGEAITTKAEQVKEFTLLRAYPDQKNDGLSLALEFSRPLVGTQDFDKLVRFEEKVGTDDSSWTLSDDGLTLRYPFVEAGKEFSLVVSPDLLAADGSRLGKELKQKVFSGELKPVVGFASQGSVLPAKDSRGLPVVSVNVPEVDVEFLRVREKDLPTFFSQYQRGGRRGSWELSSDYERSPINKLAEPVYVNRFILGGKKNERVLTYLPTQDIKELQEPGLYFALLKRTGDYEGEFDTAFFSVSDIGLHTRAYKDKLFVHTAGLKDGAPLKGIDLRVLDAKGEVVLKGSTDGNGNALLNYTLDATHVLVASTGKDTSFLPFNQPALDLSEFAVAGRDNAWFDVYAWSGRDLYRPGETVRLSALLRDNDGKPVKAQPVFLRLKQPDGKTFRETRLQPGDQGYINFEQVIPAEAPTGRWQVEFRTDPASKEAIQGMTLRIEEFLPERMKLDLDSAQKTLKPGEDLRLQANGAYLYGAPADGNRFTARMAVAAEQKPVEGLPGYSFGDPTLQLPREAKDVIDTTLPGNGQLREDVALPEEAAKAKAPIAVVLSGSLYETGGRTVTRTLKRVMWPANALVGVRPLFNPEDGADSNGNARFELMRVDAAGTPQPAKGLKITLVRELRDYHWTFNDNRWDYDFTRRFENKETRTVDAGSSAVAFDFPVEWGEYRVDVFDPSTGLTSRYPFRAGWSWGDDNRGLDARPDKIKLGLDKTGYKAGDTLEVTVTPPHAGKGILMVETDRMLYVQDIDAKPGSTFKIPVTADWERHDVYITALVFRGGSAPSKITPARAVGVVHVPMDRKGRTVAVGLAAPKQMRPEQDLPVTVSAPQLAGKMAHVTVSAVDVGILNITRFPVPDAGAHFFAQRRLGIDAYDIYSRVIESFDGGAGKLKFGGDMALQALPQAKRPTARVQTVDLFSGPVQLDAKGIARIRLKVPDFNGTLRVSALVYSDDQYGKRDVETVVRAPILAEASMPRVLAPGDRSTVTLDVQNFTGKPGQFNVKVESEGPLNLGEGSRSVQLNADAKTTLSFPLSAREGHSVAKVRVRVDGNGFKADRRYDLPVRAAWPQVLRSQVRTLDPLAAVSLDNSLTDGLMAESVNARLLVSPLPPIPFASALQGALNYPYGCAEQTTSKGYAALILDQATSSMLGADGLDAKTRRERMEGAFGRLASMQVANGNFSMWGDDGYVNPWLTPYITEFLLDAKDAGFAVPDNVLQKALNRLSEDLLSGGNQFYGQDDREKLKFANQAYSGYVLARVNRAPLGTLRTLYDNERSKAVGGLSLVHLGVALSLQGDAKRGQAALAAAFAKSSSERPSYFGDYGSAIRDDALMIALTHENKLAKPAWDARAVDLGRGLDARRNAGWMWLSTQEQVAIARLGKALAANQKALVAGELVIGGNTEAIGERKLFGRNFSANELASGVRFTPQGQPPMFASIDVAGIPRSAPAPDNSVLGVERSYYGTDGKPWSPRPLKEGEALIVRVTVTADTTMPDALLTDLLPAGLEIENFNLGDAKQWADVVVDGITISDRGEAADTKHEEFRDDRYVAALKLSRGSKANVFYLVRAVTPGTYSVPPPLVEDMYRPQLRGVGRSNPTTITVVQP

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Crispr_ID: NZ_CP044092_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_2

267760-267873

Orphan

Consensus_repeat	Method
TTGGGTAGGTGCGGACCGTTGGTCCGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044092_2

>merge|NZ_CP044092|2|267760-267873|CRISPRCasFinder
TTGGGTAGGTGCGGACCGTTGGTCCGCACGACACGGTAGTGCCGGCCGCTGGCCGGCAACTTCGTGATCGGGGTGCGGATCTGCTTTGGGTGGGTGCGGACCGTTGGTCCGCAC

>NZ_CP044092|2|2|267760-267873|CRISPRCasFinder
TTGGGTAGGTGCGGACCGTTGGTCCGCAC	GACACGGTAGTGCCGGCCGCTGGCCGGCAACTTCGTGATCGGGGTGCGGATCTGCT
TTGGGTGGGTGCGGACCGTTGGTCCGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_111193472.1\|258878_259589_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|373097
NZ_CP044092.1\|WP_005410781.1\|264620_265103_-\|DUF3574-domain-containing-protein	unknown	unknown	gnl\|CDD\|371896
NZ_CP044092.1\|WP_005410774.1\|254246_255047_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|377682
NZ_CP044092.1\|WP_111193481.1\|263726_264584_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|377965
NZ_CP044092.1\|WP_005410783.1\|267968_268727_+\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|319767
NZ_CP044092.1\|WP_080334810.1\|273692_274682_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NZ_CP044092.1\|WP_024957833.1\|252816_254106_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236724
NZ_CP044092.1\|WP_111193471.1\|257886_258708_-\|DUF3014-domain-containing-protein	unknown	unknown	gnl\|CDD\|378600
NZ_CP044092.1\|WP_080353430.1\|272395_272902_-\|DUF4166-domain-containing-protein	unknown	unknown	gnl\|CDD\|379359
NZ_CP044092.1\|WP_049451227.1\|272922_273693_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_CP044092.1\|WP_012481080.1\|255119_257705_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP044092.1\|WP_150359256.1\|275873_277076_+\|lipase	unknown	unknown	gnl\|CDD\|367570
NZ_CP044092.1\|WP_005410784.1\|268768_270550_+\|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl\|CDD\|225922
NZ_CP044092.1\|WP_111118409.1\|271983_272421_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP044092.1\|WP_005410785.1\|270546_271911_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	unknown	unknown	gnl\|CDD\|274112
NZ_CP044092.1\|WP_005410778.1\|259668_261273_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225161
NZ_CP044092.1\|WP_005407612.1\|277225_278140_-\|IS110-like-element-ISStma6-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP044092.1\|WP_150359255.1\|261875_263594_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP044092.1\|WP_049395384.1\|265318_267754_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP044092.1\|WP_024956778.1\|274795_275683_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_111193472.1\|258878_259589_+\|glutathione-S-transferase	gnl\|CDD\|373097	pfam14497, GST_C_3, Glutathione S-transferase, C-terminal domain. This domain is closely related to pfam00043.	2.34683e-30
NZ_CP044092.1\|WP_005410781.1\|264620_265103_-\|DUF3574-domain-containing-protein	gnl\|CDD\|371896	pfam12098, DUF3574, Protein of unknown function (DUF3574). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.	7.84303e-45
NZ_CP044092.1\|WP_005410774.1\|254246_255047_+\|MipA/OmpV-family-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	4.41904e-39
NZ_CP044092.1\|WP_111193481.1\|263726_264584_-\|SH3-domain-containing-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	0.00351098
NZ_CP044092.1\|WP_005410783.1\|267968_268727_+\|trehalose-phosphatase	gnl\|CDD\|319767	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2. Trehalose biosynthesis in bacteria is known through three pathways - OtsAB, TreYZ and TreS. The OtsAB pathway, also known as the trehalose 6-phosphate synthase (TSP)/ Trehalose-6-phosphate phosphatase (TPP) pathway, is the most common route known to be involved in the stress response of Escherichia coli. It involves converting glucose-6-phosphate and UDP-glucose to form trehalose-6-phosphate (T6P), catalyzed by TPS, the product of the otsA gene, this step is followed by the dephosphorylation of T6P to yield trehalose and inorganic phosphate, catalyzed by a specific TPP, the product of otsB gene. This OtsAB (or TSP/TPP) pathway, is also the most common route known to be involved in the stress response of yeast In Saccharomyces cerevisiae, the corresponding enzymes, TPS1p and TPS2p, form a multimeric synthase complex together with additional regulatory subunits encoded by Tsl1 and Tps3. Trehalose is a common disaccharide accumulated by organisms as a reservation of carbohydrate and in response to unfavorable growth conditions. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.27916e-66
NZ_CP044092.1\|WP_080334810.1\|273692_274682_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	5.57998e-147
NZ_CP044092.1\|WP_024957833.1\|252816_254106_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	7.36235e-70
NZ_CP044092.1\|WP_111193471.1\|257886_258708_-\|DUF3014-domain-containing-protein	gnl\|CDD\|378600	pfam11219, DUF3014, Protein of unknown function (DUF3014). This family of proteins with unknown function appears to be restricted to Proteobacteria.	3.83369e-54
NZ_CP044092.1\|WP_080353430.1\|272395_272902_-\|DUF4166-domain-containing-protein	gnl\|CDD\|379359	pfam13761, DUF4166, Domain of unknown function (DUF4166). This domain is often found at the C-terminus of proteins containing pfam03435.	8.97536e-23
NZ_CP044092.1\|WP_049451227.1\|272922_273693_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	8.28518e-88
NZ_CP044092.1\|WP_012481080.1\|255119_257705_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP044092.1\|WP_150359256.1\|275873_277076_+\|lipase	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	5.50197e-07
NZ_CP044092.1\|WP_005410784.1\|268768_270550_+\|glycoside-hydrolase-family-15-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	1.56422e-84
NZ_CP044092.1\|WP_111118409.1\|271983_272421_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	8.20331e-51
NZ_CP044092.1\|WP_005410785.1\|270546_271911_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	gnl\|CDD\|274112	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see Wolf, et al., ). [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP044092.1\|WP_005410778.1\|259668_261273_-\|membrane-protein	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.62973e-07
NZ_CP044092.1\|WP_005407612.1\|277225_278140_-\|IS110-like-element-ISStma6-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.09325e-23
NZ_CP044092.1\|WP_150359255.1\|261875_263594_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP044092.1\|WP_049395384.1\|265318_267754_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	6.80941e-63
NZ_CP044092.1\|WP_024956778.1\|274795_275683_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	2.53346e-90

>NZ_CP044092.1|WP_049395384.1|265318_267754_+|TonB-dependent-receptor
MSVRLPASPLGLAIALALSSAAVPALAQDATNLDTVIVTGTRAADRTVLESTSPVDVLTAEDIRKAGVVNGELGSALQALLPSFNFPRQSNSGGADHVRAAQLRGLSPDQVLVLVNGKRRHHTALVNTDSKIGKGTTPVDFNSIPVSAIKRIEVLRDGAGALYGSDAVAGVINVILDNGGDGGEIEASYGANHTDLKPIGRTLTDGQTGNISAKVGTSLGEDGGFLRVGLEYKHRNGTNRAGFDQIPPWDQTPGNLALQGKRNYVLGDGKSKDINLWLNTEIPVGQTSTFYAFGTFNQRDTEGANYFRYPDGDANWKQVYPNGYRPISEGENRDVQAVAGVRGQWGEWSYDGSLDYGQNDFTYRLRDSLNASLGPTSPTRFKTADYEYAQTVGNLDLSRVFTQSDSISHTLGLGVEARHERYQTRPGDPASYAAGPYTDRPTGSQAGGGLTPQDAATLSRDVASAYASLSSQFGEKFSTDLAARYEHNDDFGGELTGKLGLRYEFTPAFALRGAISNNFRAPSLAQIGYESTSTGYNAGGQLVQGRLLSVNNPIARGLGAQNLKPEKSINTSLGFTSRIGEHFDLSLDFFQIDIDDRIALSESITGDALTDYVAANYGVSGLQSASFFVNAADTRTRGAELVSNWRQSLGDGQLLLTGTYAYTKTTLKNVLATPAQLRALNPDYVLFGIEETNTLTDATPRTRGSFSAAWSNDHWSLSTRVNRYGSATRVFNFGDGYIPRQTYQAEWQLDAEVEYRITPRWSVAIGGQNLTDNYPDRSNSDIHYFGNLPYDVLSPIGSNGAYYYGRVRYTF
>NZ_CP044092.1|WP_005410781.1|264620_265103_-|DUF3574-domain-containing-protein
MKHLGLVFAVLLATSGCASLSSQAPSAYATATTAELKGDAARPSAGHGWVRSELYFGVGEEQGAGNRPQADTISEAQWRTFLDKEVTPRFPDGLTVFDAYGQWLFRGDASPNRLRTKVLVVLHEDTPQRRADIEAIRLAWKQQTKHQSVLWSRQPVEVSF
>NZ_CP044092.1|WP_111193481.1|263726_264584_-|SH3-domain-containing-protein
MNYRECVLGLVLAGVLAPSAQASGDDGETLRFQVAAHVQAHADPQQDGSIAVQLSPSGKRQTLEGAADADGSSRWSLEDVDFDGYPELVARAPVGMVNEAVTVYRFDPASAGFRALQADTHGKDSCGDLMGLSVDAATRTLTSSCRSGPMWYTDQYRFAGAKLHLYRSESVLMLGDTLSAALQWEQTDEQGPLAVWRTYDPAGRVLESAIADGLGAPPDGPLRGQQATVVTARLFLFDRPGASSTKRYLVRGDRVELLDEQDGWVKLRYRNPKQGAVEGWINVND
>NZ_CP044092.1|WP_150359255.1|261875_263594_-|ubiquinone-dependent-pyruvate-dehydrogenase
MSKRVAEIVVDALQQAGVRRCYGIVGDTLNHVTDAMHGSEIAWVHVRHEEVAAFAAGADSLVSGELTACAGSCGPGSLHFINGVFESNRNRAPMVLIASQVVTSELGMEFPQEVDFKAVYASCSVFCEQVHSAEQARRVVTLACQAAISRRGVAVVILPADISQAEVKHDVPFSVHYTQPVLRPSDAELQRIAELLGQGKRIGIYAGAGCQGAHAQLLELARRLQAPIAHTSRAKDFVEPDNPYNMGMTGIFGIESGFHTLMECDTLLLLGADFAWGQFYPDKATIIQVDRDGSHLGRRHPVNLGVVGDTAPTLDALLPMLPPREDSSFLDECIERRDKALKKREQEEQPGEGELIHPQHLTALLSKYASDDALFTADGGSPMVWVLRHIRVNGRRRTLTSLLHGTMANAMPQALGLQKAFPGRQVISLSGDGGLAMLLGDLLTAVQENLPIKVVVFNNGSLNFVELEQKVEGLLDNYTDLKNPDFGRLAEVIGFHGRTVTRSEDLEEAVQDFLSQRGPALLDVHTSRAELVMPPQIEAKQVAGTALYAAKAVLNGRFDDVKHLLVDNFLKK
>NZ_CP044092.1|WP_005410778.1|259668_261273_-|membrane-protein
MSAPASAAPRRWFVAGDFNGFFGLVVDNLSILGFIAMALVGIFQFPADVVFGRMFPGTAFGVLVGNLLYTLMARRLAARTGRDDVTAMPLGLDAPTSIGMALLVLGPAFLAFKQQGMDPHAAGIATWQLGMAALVIMGVLKFVLSFFGEAVTRALPRAALLGSIAGIALVLMGLLPLLETLRSPLVGFTTLGLLLYVLIAKGKLPVRGPGVLLAFVFGTVLYYGLGLAGLGAPGFHVPEWVPPQVVLPLPTLGFLDGLPTAMTYLPLLLPFGLLMVVGGINVSESARAAGDDYRTRDILLVEAVATLVAGVCGGVAQTTPYIGQPAYKHMGARSGYTLLTGLFVGIGGMLGIISGLVQWLPLAVLAPIIVYVAIDITTQAFQATPRHHTGAMVFGFLPSVAYLLAIKAPGWIAPDQLPQLLSKLDGHGLPELAVIFTLGNGFIITSMLWISAVAAMVDGRLRRACGFLLVAAVLTLFGLIHSVDPRGGIYLPWELDGLARIISWQFAGAYVALALLLGLLSLQKQPVQPLGENN
>NZ_CP044092.1|WP_111193472.1|258878_259589_+|glutathione-S-transferase
MQYALYYWTGIQGRGEFVRLALEDAGVDYIDMARVHGDAVMQPFLDGSSEGAQPFAPPFLKAGRQVIAQVAAILDFLGPPLDLVPQAASRRVQALQLQLTIADLIAEVHDTHHPIAASKYYEEQKTEAKARAASLRSERLPKFLGYFEQVLAANGGRHALREHSYVDLSLFQLLSGLDYMFPRRMQALAPTLPLLRALQERVAKRPNIAAYLASERRLPFNTNGIFRHYPELDAER
>NZ_CP044092.1|WP_111193471.1|257886_258708_-|DUF3014-domain-containing-protein
MQSGKAVWPWVLGVVVIGGAGGWLFRDQLKRLADGVSVPVQSTPASTGAPPQPQAAVQPAPAPPPIRHPLDTEAAADPALPTLADSDAAAWGALSQLFQGEGPLTLLLRDHLIQRLVTQVDNLDKPSVPPTALAARPLPGNLQVEPGEGGEHIAASNGARYAPYVQAFTALDPAATATAYKRFYPLIQQAYVDLGRPEGYFNDRLVAVIDHLLDTPELAQSPVVQRDERGRYRFVDPTLQSRSIGQKALLRMDAAQARAVKQQLRAIRSAITR
>NZ_CP044092.1|WP_012481080.1|255119_257705_-|ATP-dependent-chaperone-ClpB
MRMDKLTSRFQQALADAQSLAVGRDNSIIEPVHLFSALLDQQGGSTRPLLAQAGVNVPVLRERLTEALDALPKVSGQAGNVSMGNDLGRLLNQTDKLAQQHGDAFIASEWFVLAALDDGGTLGMALRAAGADKTRLQAAIDKLRGGENVQSENAEEQRQALEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINDEVPEGLRGKRVLSLDMGALIAGAKFRGEFEERLKGVLNDLAKNEGQIILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVFVGEPSVEDTIAILRGLKEKYAVHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASRLRMEIDSKPEELDRLERRVIQLKIQREMLKKEKDEASRQRLADLENDIDGLEREFSDLNEIWKSEKAALQGATKIKEQVEQAKLELEAAQRRQDFAKMSEIQYGLLPQLEKQLAAAQEAEHKDFKLVQDRVTDEEIAEVVSRWTGIPVNKMLEGERDKLLRMEEVLHNRVVGQEEAIKVVSDAVRRSRAGLSDPNRPAGSFLFLGPTGVGKTELCKSLAEFLFDSADAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRRPYSLILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQDMSADDSPEAYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKQQIKQIARIQMRGLEKRLAERGLKLAVSDAAFDLLGNVGFDPVYGARPLKRAIQSQLENPLAQQILSGAFVNGDTIEVGNDGGRLVFAKA
>NZ_CP044092.1|WP_005410774.1|254246_255047_+|MipA/OmpV-family-protein
MSQLRRSPALLCLALLPLFAAPIAHAKDDHWTFEVAAGGGVAPRYSGSEEYRATPSLSFDVTSPGGWFLGTSGIGWGTSIGEHTRVRAYVGASGIRKEKDSLLGGSDFLRGMGDIDARPLVGVSAGYTLGEAVLSGSWQFTRKDEDKAENGLATQQIHLNLSMPLFDLAGGVVSGSVSTDYGNRGYMQTWYGVSPEQAARTGFAEHKPKAGLVSAGVGLKWSHRVGRNGNWYISAEGTRLLGDAADSPIVQKANQFGLMSGYTHRF
>NZ_CP044092.1|WP_024957833.1|252816_254106_+|two-component-sensor-histidine-kinase
MKRLFLWLWFITGACFLVSVFFLNHILDGIYTPVQDRVFVQQVRGQVYALRSGLAGLDADQQRERLQQWQPHYGIALTLLDKPPALDAQEQVAVKADGFIVRDQYQQVLLPIEGSDGRWLHLRLPGAVQMTTYMTIAAYLSILLLVGASLYAWVRLLWRDLEALRRHADRIGSGDLQARAQVSPRSQIRVIVDHSNRMAARVAELVQRQRDLTHAISHELRTPIARVAFGLDLMQDSDDRERRERLARGLHGDLAELNRLVSELLAYERLEHPSEGEPMQRIEANDWLQACLADARRDAERAGVVLRVQPSALPRVDAEPRLLQLALSNLVGNALRHARSQVEVSLVGVSGRACLRVDDDGPGIAEADREKVMRPFTRLDDSRSRDTGGFGLGLAIVSRIAVRHGGELRISRATLGGARMEMHWPLAAS
>NZ_CP044092.1|WP_005410783.1|267968_268727_+|trehalose-phosphatase
MAEPLPLRPPPPLLDDACALFLDVDGTLIEFAARPDAVQLLPDVREAIGRISDRLEGAVALVSGRPLEQLDQLFAPLQLPAAGLHGHELRGEDGRVLRDEHDDDTAEWLHALHQQAMRFAHGHPGVLVEDKGVGLALHWRGAPHAASDVRAFADRHVRGRTSYRLQPGDHVVEFVPVGTDKGRAVRRMMQYLPFRGRLPVFLGDDLTDEFGFDAANGQHGWSVLVGEREPSAAVFALPDIRSVHAWLRENAY
>NZ_CP044092.1|WP_005410784.1|268768_270550_+|glycoside-hydrolase-family-15-protein
MTQPDLDLGVVGNGSFGALVDKHARVVWSCLPTFDGDPTFCALLGPNQQTGGDFAIELEDFASSEQEYLTNTAILRTVLRDTQGGALEILDFAPRWRQNDRFYRPVSLIRQVRPLAGSPRITVRARPLADWGARVPESTWGSNHVRWILPEHVLRLTTDVPVRFVRDGLPFVLNHPIHLILGVDESLNRSISGYVQEAFQRTRDYWREWVRYLSIPLEWQDAVIRSAITLKLCQYEDSGAIIAAMTTSIPEAPGSVRNWDYRYCWLRDAAFVVRALNRLGATRTMEQFLGYIFNLATTDGTLQPLYGIGFEAKLDEDEVPSLSGYRGMGPVRRGNLAWVQRQHDVYGSVVLASTQLFFDRRLQDPGDAHTFARLEPLGEQAFALHDVPDAGLWEFRGRTEVHTYTSAMCWAACDRLCKIAVRLKRDDRAHYWRERADTIHARIMAESWNEELGHFTDTFGGHRLDASLLLLADIGFIDALDARFIATVDAIGRDLKHGNSLYRYVAPDDFGEPETSFTICTFWYIDALAAIGRMDEAREMFELLLKQRNHLGLLSEDLAFDSGEAWGNFPQTYSHVGLITAAMRLSRSWQEAS
>NZ_CP044092.1|WP_005410785.1|270546_271911_+|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)
MSRLVVVSNRVAVPGENRAGGLAVGLLAALKERGGLWFGWSGKTVKEGSGTLHRQKDGDIDYVTMDLSKREVDGYYNGFANRTLWPLLHFRLDLVDYDRGTRETYHKVNALFADKLAPLLREDDIVWIHDYHLIPLGALLRERGIGCRIGFFLHIPMPSADLLQAMPDHLRLFSALYAYDLVGFQTQRDADRFQTYLRLFGGGRVLDNGELEAPGGRRFRAAAFPIGIDTELIARQAGTAATKAAVKNLRASLRDRQLAIGVDRLDYSKGLPERFLGFERYLERHPDQRGSLTYLQIAPVSRGDVTEYRQLRSQLEQIAGHINGGHAEPDWTPLRYVNQNFTHATLTGFYRAAAVGLVTPLRDGMNLVAKEYVASQDPEDPGVLVLSLLAGAADELKQALLVNPHDLDGVADAIATAATMSLSRRKERWHAMMDHLRTYDINHWRRSYLDALEG
>NZ_CP044092.1|WP_111118409.1|271983_272421_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MKVGSNRSEAAAEAGSAVIVFDGVCALCNRWVRFLLRFDRAGRYRFAAMQGQQGSAMLRAHGLDPQDPISFLLLDAQGAWTDTDAILRVLAGLGSAWRLIGVLRAVPRGWRDAAYRALARNRYRWFGRHDACHLPAPEQAARFLD
>NZ_CP044092.1|WP_080353430.1|272395_272902_-|DUF4166-domain-containing-protein
MLGPAFATLAAPVQALHAAPLPCRYVGQARIVRGRHWLVPLLAALARLPKDGGALPTEVAFSAHGQGEQWARRFGRWPMVSRLWAHEGCLREQLGAVRFEFDLQAREGGIDWSVRRVWAFGLLPLPRRWFGGVRCREAWQGERYTFLVDVTLPWAGALIRYEGWLEPQ
>NZ_CP044092.1|WP_049451227.1|272922_273693_-|peptidoglycan-editing-factor-PgeF
MAAALPVLQADWPAPPGVNALTTRRHGAGISPAPFAQFNLGNRHAADGDTPANVEHNRQLLQQGLGLPSTPHWLRQVHSSTVLRFTAPPVPGASEPVADAAVTSVPGVVLAILTADCLPVVFAAADGSEVGAAHAGWRGLADGMLEATVAAMQTPPAQLRAWLGPAAGPADYEIGEEVYHAFVGHDPAAEAAFVATRAGHWKVDLFALARQRLQAAGMDPAQVHGGTVSTMADPDLYSHRRDRRTGRMATLAWIAP
>NZ_CP044092.1|WP_080334810.1|273692_274682_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSEQPSESARQAIVPDTAAGRRFDAVVAELFPEYSRSRLTEWIKAGEVLLDGAQVRPRDPLRGGEVVTLNVVLETQTDAQPEDIPLDVLFEDEHLLVINKPVGLVVHPGAGNHSGTLVNALLFRDPSVAVLPRAGIVHRLDKDTSGVMVVAKTLEAQTALVEQLAARDVHRQYLAIVMGALVAGGTADAPIDRHPRDRLKMAVRDDGKEAITHYRLRERFRAHTALECRLETGRTHQIRVHMAHVRHPIIGDPLYGGALKLPKGASDELVAALRGFKRQALHAETLEFTHPITGEPVRNTAPVPEDMLHLMKVLREDSEAFAARERDRW
>NZ_CP044092.1|WP_024956778.1|274795_275683_+|outer-membrane-protein-assembly-factor-BamD
MIRRSSMLSAPVRLTALLLVLVIAATGCHRGAKKGDRPDEGTPVEQLYEKSHKLMQGGNWSGAETSFRRLVAQYPYGPYTEQAMIETAYAQYKAGKHDDAVSSIDRFIRTYPTHRNIAYLYYLRGLANSNRSTVFLRRVWSLDASRRDLSTPHQAYSDFNIVVDRYPNSRYAADARQRMLELRDVFAQHELDNALYYMRRGAWVSAAGRANYLLETYPQSAFQYDAVAVLADSYTHLGNKTLADDARRVLQLNQPDHPWLEGKWPKYPWMIRKLNPFAGEKSASTGQRNARLEKK
>NZ_CP044092.1|WP_150359256.1|275873_277076_+|lipase
MTPPPRRFHPLACILATALLALSSGPMAATPPAPGDLLSAAPYRASWVPSKAAQAYKLHYRTPDHRGQLAEGTGLLYLPAGVAPAGGWPVVSWAHGTQGIADRCAPSVSGPYQPERDGRFLDQFLAQGYAVVAADYQGLGSPGDHAYLHVRTAARNAIDLIKASRQYLGTATLSPRWVSVGHSQGGAAALTAGHLAPTYAGPSLHYRGSFTTGTPTAVELTALVMKPDNRTANPGALNAYHAYLLDGLLQVAPQIDRVLSDTGRTRVAVAREQCLGELATTLDGADTGSMFTAPLTSVPGIWAVLYDYLGVPRRGFSQPLMLGHGSEDRDVPYLTTLLYAAGLALRGEPVAFRRYPVDHRGTLDAAAADGLAFVRARLGDGHFNDAAETADLEQLLDDAR
>NZ_CP044092.1|WP_005407612.1|277225_278140_-|IS110-like-element-ISStma6-family-transposase
MFGIGIDVSKATLDVAVHGEQFRQFSNDKRGFVRLIRWLKTWPIKQVVLEASGGYERAALDVLHAAGLPMVRINPARARRFAQGTGRAAKTDRLDATVLAQMAHLLPLTRYVPPAPWQQRLAEFAQCRRQLVQMRVSEMQRLRRLVDPDLIAMKQRHIAQLSDDLKQLDKAIAEQLEGQPGWKNIGALKGVGPILISTLACELPELGSLGSKAIASLVGLAPMNRESGTWQGQRRISGGRAVVREALYMAALTAIRYEPRLRAFYAGLKAKGKASKVALVAVMRKMLVILNARKRDAEVALGCP

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Crispr_ID: NZ_CP044092_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_3

375404-375516

Unclear

Consensus_repeat	Method
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP044092_3

>merge|NZ_CP044092|3|375404-375516|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGGCGGTAGATCCGCGCCGTGCGTGGATGGGAAAGCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGTTGCGG

>NZ_CP044092|3|3|375404-375516|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	CGGTAGATCCGCGCCGTGCGTGGATGGGAAA
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGTTGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_133050329.1\|378968_381080_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP044092.1\|WP_099472642.1\|369266_370400_-\|pilin-protein	unknown	unknown	gnl\|CDD\|284778
NZ_CP044092.1\|WP_005410877.1\|383890_384190_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP044092.1\|WP_012481150.1\|374201_375290_-\|membrane-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP044092.1\|WP_005410870.1\|375655_376933_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP044092.1\|WP_060380571.1\|362437_363082_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_138464127.1\|385257_388326_+\|formate-dehydrogenase-N-subunit-alpha	unknown	unknown	gnl\|CDD\|273689
NZ_CP044092.1\|WP_062605733.1\|368542_369250_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|237939
NZ_CP044092.1\|WP_150359264.1\|381622_383785_-\|RelA/SpoT-family-protein	unknown	unknown	gnl\|CDD\|223394
NZ_CP044092.1\|WP_099472645.1\|359641_362065_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NZ_CP044092.1\|WP_099472635.1\|377560_378499_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239115
NZ_CP044092.1\|WP_049396152.1\|384300_384966_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP044092.1\|WP_062605734.1\|363258_364002_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_099472640.1\|370396_373123_-\|usher-protein	unknown	unknown	gnl\|CDD\|185210
NZ_CP044092.1\|WP_005410881.1\|388336_389254_+\|formate-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|273705
NZ_CP044092.1\|WP_099472639.1\|373173_373683_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|367947
NZ_CP044092.1\|WP_005410871.1\|377229_377472_-\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_CP044092.1\|WP_005410875.1\|381087_381474_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP044092.1\|WP_099472643.1\|364071_368475_-\|autotransporter	unknown	unknown	gnl\|CDD\|240612
NZ_CP044092.1\|WP_005410860.1\|358363_359422_-\|pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|378558

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_133050329.1\|378968_381080_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP044092.1\|WP_099472642.1\|369266_370400_-\|pilin-protein	gnl\|CDD\|284778	pfam07434, CblD, CblD like pilus biogenesis initiator. This family consists of several minor pilin proteins including CblD from Burkholderia cepacia which is known to CblD be the initiator of pilus biogenesis. The family also contains a variety of Enterobacterial minor pilin proteins.	5.19749e-51
NZ_CP044092.1\|WP_005410881.1\|388336_389254_+\|formate-dehydrogenase-subunit-beta	gnl\|CDD\|273705	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing. This model represents the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (TIGR01553) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	7.07461e-156
NZ_CP044092.1\|WP_012481150.1\|374201_375290_-\|membrane-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	5.57878e-06
NZ_CP044092.1\|WP_005410870.1\|375655_376933_-\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP044092.1\|WP_005410875.1\|381087_381474_-\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.07399e-58
NZ_CP044092.1\|WP_138464127.1\|385257_388326_+\|formate-dehydrogenase-N-subunit-alpha	gnl\|CDD\|273689	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit. This model describes a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilized mainly in the nitrate respiration by nitrate reductase. In E. coli and Salmonella, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in E. coli which contain selenocysteine. This model is well-defined, with a large, unpopulated trusted/noise gap. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	0
NZ_CP044092.1\|WP_062605733.1\|368542_369250_-\|pilus-assembly-protein	gnl\|CDD\|237939	PRK15308, PRK15308, fimbrial protein TcfA.	1.45229e-49
NZ_CP044092.1\|WP_150359264.1\|381622_383785_-\|RelA/SpoT-family-protein	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP044092.1\|WP_099472645.1\|359641_362065_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP044092.1\|WP_099472635.1\|377560_378499_-\|nucleoside-hydrolase	gnl\|CDD\|239115	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR). .	4.14965e-118
NZ_CP044092.1\|WP_099472643.1\|364071_368475_-\|autotransporter	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	7.83634e-17
NZ_CP044092.1\|WP_099472640.1\|370396_373123_-\|usher-protein	gnl\|CDD\|185210	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional.	2.29495e-180
NZ_CP044092.1\|WP_099472639.1\|373173_373683_-\|fimbrial-protein	gnl\|CDD\|367947	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit. Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia. The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown. A member of this family has also been identified in Salmonella typhi and Salmonella enterica.	4.60974e-21
NZ_CP044092.1\|WP_005410860.1\|358363_359422_-\|pilus-assembly-protein-PilM	gnl\|CDD\|378558	pfam11104, PilM_2, Type IV pilus assembly protein PilM;. The type IV pilus assembly protein PilM is required for competency and pilus biogenesis. It binds to PilN and ATP.	8.46083e-170
NZ_CP044092.1\|WP_005410877.1\|383890_384190_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.39874e-21
NZ_CP044092.1\|WP_049396152.1\|384300_384966_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	8.07248e-121
NZ_CP044092.1\|WP_005410871.1\|377229_377472_-\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	3.97798e-51

>NZ_CP044092.1|WP_012481150.1|374201_375290_-|membrane-protein
MSTRFDPPERGPLGPDVAAVVTAPIVAPPSESAVSWGAIFAGATAAAALSLILLILGVGLGLSSVSPWSFEGVSKETFGWSSIIWLTFTALAASGLGGYLAGRLRTKWTQIHGDETYFRDTAHGFVSWAVATLLTAGLLTSAIGGVLGAGAKVAGAAAGVAASTAGVAAAGAGSTAAAAPEGDLNYWVDSLFRNATDAGPAAAGAPPAPGAPDAASGVAATDPAPPPPAASVGPRDVRVGLPPRPMPGNGPMGDRREVRAEVNRIIVNSLQGDGLDPADTQYLAQLIARETGMSPAEAQARVTDVQTRMRAALEKARNTAKQAADDARKATAYAALWLFITLLIGAFFASLSATWGGRRRDL
>NZ_CP044092.1|WP_099472639.1|373173_373683_-|fimbrial-protein
MHAIIKKAALAAALATASLSAHAVETKISVYADVDPTLALLRDDGTPLPDMVTLTHDPLRGLIPNTQRVRIHSNDETADIEARIDGSFFLANETGAVTVPMTISLNNRALGAAAIEYKAADLFNGAGSTPGASISMPLTIAQTTPAPILTKGAYSGLVNVVLNQKAATP
>NZ_CP044092.1|WP_099472640.1|370396_373123_-|usher-protein
MTLHAPAVTRLAVALALALSTPLAAARGVPPGFEDLVEGQTEQLDIQLFGRSAGLSPVRVTLEHVQLEDPARVLQSLDLPAEAQAALLPALSQPLPRNSHLACRFGGASAGCGYIDPPEAPDEVRALYDEGEGAVRLFVARQWIPGKPAAERFHTVTANAENAFLHQQTLNLSGGRDYQSLSARGVGTLGLFDRGHLSAEWYYNQQRYRSHSDDDFQFDNVYYRHDLGPAHYLQAGRMDRRNLSSPQGGTFSFSMLPLDRFQGARLGTTQAYVDTDAAVQASPLTVLLARDARVDVFDGERLLQTFYLQAGINQIDTRNFPFGNYLVRMRIYEDGVLVRTEEAPFDKGGDWTNSQWQWFVQGGHRNERRSDAFDGERIAMAGVRVPLGRDAAITAGAATFGGHRYGELRLDLRRVMATQEVRATFSGMRGSDGSNGQQHQLSYRRTASWNLYQQRMRGKACQFEAEARDQLGCTNALSGSMSLPLAGGNVYVGYTRRQTWRTGWHRPAFEQDPLFGLEPLLPPGPLEPRREPLLSRTWQASFSRSHRWQDFSVSTRVGVWRQNSTDSVRGSTERDRGIYVNLSLSRRHRSAAGDGQRRYAVDVRQPQHQRPAIDYSVGQSLRQELDTQYRELSGELRANNNERYSASLGGQLQNGIGHTSASVARYQQRGRSETGYSGAHNSGFALGRRGFYWSGANGADAGLAVQVADTDDADLRGVAAELQVGGLRRQRLQIGERRLLPLPAYQSQRAEVQDASTLDSIAAIRVTGVGGARPMFLTPGKLMRMPVPIEVTYTFIGHARDLAGAPLGGARILNAPVPGTSANGGFVADFPRRETTLYLLQDDRLLHCPLQVRERRQVVLLVGAVHCEPLAVAQLPAEIRQQARVTRLLQERALIAATPRTAAAGGTP
>NZ_CP044092.1|WP_099472642.1|369266_370400_-|pilin-protein
MSRRWMFVLMLVCAPVLVMPRAWAQWPPETHPADQSRDIVMSWDRSAVPGDVELWAPRTVLGFSHDLALKYGQIHVVCESASDSEFGRCPLDGEPGVSLGSSNVDLLFVEQRTGLRSELRAQGYLQRVMSDWVCAIDYWDTLRRQLNASFWYICSSGQPVGTGVYLEIPATELSRLVAGHWKATMRLNIKADPAAAPVATATFNFDFTVTDYDAISIYFPTFDTVAPLVNLDLRYDPIQKVVGGRKQLDMCLYDGLGSQSEYLDVTVRDSGPRPPAGSDFSLWHRDGGSDASQRLDYRVHLDYGGHRLAMKHNVKQQLRGIDSAQLRLVMLPGISQPVYCVPTPLTLETPPTPIASQRPGLYEGELTVVLDVPTAKP
>NZ_CP044092.1|WP_062605733.1|368542_369250_-|pilus-assembly-protein
MKKLLFCLLPVSALLALPAHANLSIHPMRAAVEAKRGTQIRVYSQSTIPQYVQTRLRRIVNPATPAEEEQEMEASDAAIAITPGKFALSGGGNRLIRVIPLQQVQKETAYRLYFEGVRGPDDAPLEDGEGAQANIGVSLVWGALVNVTPDDGVVDLRLQDNTLHNTGTLRVGIIGAEECTAAGTCTPHPVSHSLYPDAALTLPFQLQPGNSLQLRYRLTRDGYREHVRTIEPTAT
>NZ_CP044092.1|WP_099472643.1|364071_368475_-|autotransporter
MNRIYRRIWNHAKGCWEVASELTRPCGRKSSRAAGAGGLLMVALMLAGGEVHAKTRYYIGCDPFNLGNGEFVSCSPITGSYEDSTFIGYALSSGRNSLGYGAGVNMKGDNTTAFGIGARINGQNSAAFGFKASTYAVDSVAVGYNARTSADGGHNVAVGANAYAAYIGATALGNKAEARAQNAIALGSGSSSRGVDALALGANSSTSAAGSMAVGANSSATRTNAIALGLSSVAQQENAVALGASTFSNGVDGVALGSRARVDTGAGTGGVAIGGGARAGSLGYTGAIAIGGESRALTDGVALGYAASASAQGAVALGVRSVATEANTVSVGSASVRRRIVNVADARITASSTDAVTGKQLHAMNERVDGMIKQDSAGGVVRIANSNTGTEVSMRNAVLATRKVSGVSDGALTTTSTDAVNGRQLNTTNGNVTKAQTAADAAKADASKALAQVTTVTGLIGQASSTSSVRLGEKNSGTSLDIRNSANANRKVTGVADATLSTSSTEAVTGRQLNTTNENVAKAQTAAGEAKADASKALTQVVTLGGLVGQVSATGNVRLGEKNSGTVLDVRNSANANRKLTGVAEGVVSDSSFEAVNGRQLNATNDKVAAVESVARTAGTEAAAAKTDAAKALVETAALGGLVAQVSTTGNVRLGEKNGGTTLDVRNSANANRRISGVADGLLNASSAEAVSGKQLYSTNSRVSALEDVSQFVSIGAAPTSEPAEAGPVGVAIGNSAKTGNEGGTAVGTHSKSLGRNSVAVGRASTVHEGSDNGFALGAGAEVGISEGGARGGVAIGAGAKVGKGADGSLAIGEGSQANEAGVASFGSATAYRRLVNVARGAADHNATTVSQLKDSLATLGGGAGMDANGNIIAPTYSVQGGTQNTVQDALMALDGAVTTAGRRADKVEGQLNSIFQDSPSARGDGMDQIALNGANGMVLTNLADGRVAPGSRDAVTGNQLYAAEQKISQNRDDLEAMRKEREMRERAMRGFDAGGPIDFGGARLTGVADGSLSTDSRDVVTGRQLFSVSDRVSQIEDQHRFFKIDTDQLSEGASAGFLGVAIGDSARTGVDGGTAIGSYAAALGVNSVALGRGSWVSEDSSGGFAVGAGAQVWERNGIAIGESAMVLKGADSSLALGVGAVATEKSTVSFGSGSIQRRLVNIANGTANHNAATVGQLRGALSALGGEVDANGNIVGPSFTVQGQSQSTLNGALEALDGAVVSNRSRVNQVESQLRSVFQDTPSVRADGLNQLTLAGTHGMVISNVANGLIAAGSRDAVNGGQLHSMQQQLNGRMDGLEQRIDAPQPQAMAVASVPEPEAPVPQAEGGQQVASAGEGEKPAPQPKTKKEDSPKPQVDTAELEKMLARANEYTDGAISNFERRLDKMDKRFNRMAAMSSAQTAMAMNTAGLATYNRLGAGVGYSEGESAMAVGYQRVLNEKGSATFSLNGAFTNSGERSMGVGVGIGW
>NZ_CP044092.1|WP_062605734.1|363258_364002_-|hypothetical-protein
MYRWVSGIVSYRTFYIWRARYRYYTRNLDMWTLMSGLCIAGLLLALWYLWQMLGVPPPRVHPQAAALRIDGVTSEAIHRIVLVRHAGRTPGAPFTTPEEVRASTLRTMRVRQVMDSEVVWRLKADMLADIADYITATGGCFPYDCRRVLDRLDYVRQAGVENAQINAALSTILEVSLDQMPPLEADEHERVKSGWSDGFNDIYDQIGLLRGLQVMHAQMMREYPQRAPAPWLPRLLSDPLRDTRFVW
>NZ_CP044092.1|WP_060380571.1|362437_363082_+|hypothetical-protein
MHRARQHAASQTRERRHRLAHEAARLMAEGGIRDYHQAKLKAASRLGIHDDASLPRNTEIEDALREYQRLFAGPQHGSELQRRREAAMRALEFLHGFSPRLAGPVLEGTADANSPVQLHLHSDDPEAVHRFLDEHGIPAESRTRRLRMDRERCLDVPVWVFSAEELTFDLAVLPYDALRQAPLSPVDEKPMRRASVAQLRQVLAEAEISAYIGG
>NZ_CP044092.1|WP_099472645.1|359641_362065_+|penicillin-binding-protein-1A
MTRLRRWLRWIFLIVLVLALIGAAAVGGLYYAVSSKLPDVQTLRDVEMQEPMYVYAADGKLMAVFGETRRTPITMKDVPERLKQAFLATEDARFYEHGGVDYMGIGRAVWLLATTNDKRVPGGSTITQQVARQFFLSSEYSYTRKLAEILLARKIESELSKDEIFELYLNKSFFGNRAYGVAAAAEFYYGKKLNELDLDEMASLAGIPKFPSSGNPISNPERARQRRDNYVLQRMADLKFVSQAEADAAKAVPMHATAHEPPVQVDAPYVAELVRQEMIARFGGDVVNKGYHVTTTIDSTLQTAANQSVRDGLLLYDHRHGWHGVEKQVQVGAGEDAAALAEHLRGMYGQAGLLPAIVASTGADGSATVVLANRSEIVLPAGAAKWTNKTPGKLVQRGDIVRVRAGAKEGEWLLDQIPRGQSALVSLDAHSGALKALVGGFSFSGNKFNRATQARRQPGSSFKPFIYAAAFDKGYNPASIVLDAPVVFRDRRGKTWAPQNDGGGFRGPMRLREALVQSRNLVSVRLLDGMGVDYARKYISEFGFAESELPPNLSMSLGTASLTPLSVARGYAVFANGGSRVDTWLIDQVNDRDGNLVFKENPALACRDCAGSSDQPVNQVVDGFNFGAPAPKVDPAAAAKAEAKTETPAAPANPDARTAPRAIDARTAYQLVSMMRDVVQRGTGVQAKVLGREDVGGKTGSTNDHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWIDYMRTALKDTPIAQNEPPSGMVQATLNGATEWVKVEDMDRLTDYDLNLNTPQADAAAFDIF
>NZ_CP044092.1|WP_005410860.1|358363_359422_-|pilus-assembly-protein-PilM
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAAVAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELGGLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEEAGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLAQMTLGPKVNAHALAQDAPALMIATGLALRSFD
>NZ_CP044092.1|WP_005410870.1|375655_376933_-|citrate-synthase
MSDLDQVTLNAGDKSVVLPVIKPTLGNDCVDIAKLTKETGFFTYDSGFTATASCKSAITYIDGDKGVLLYRGYPIEQLSEKSSYVEVAYLLINGERPSAEQLKAFTDELTAEANVDESINTLIGSFAKDAHPMAILAAAIAQLSAIYHDSLDLSDAEQRRQAAVRLIAKVPTLSALIYRHGKGLPANKPDTSLDYVSRFLKQTFESADGQYDLNPDVVKALDLLFILHADHEQNASTSTVRLVGSTGANPYASVAAGVTALWGPAHGGANEAVLKMLEEIGSADNVESAVVKAKDKTSGFRLMGFGHRVYKNFDPRAKVIGEMTSKVLKQLGVQDPLLDVAVKLEQAALQDEYFVARKLYPNVDFYSGIIYKALQIPTEMFTVMFALGRTSGWVSHWLEQQVDPEMKIGRPRQVYTGSDVRDYQG
>NZ_CP044092.1|WP_005410871.1|377229_377472_-|type-B-50S-ribosomal-protein-L31
MKADIHPNYRDVVFHDVTSDFKILTRSTMATKETIQWEDGNEYPLVKVEISSASHPFYTGKHKVIDTSGRIDKFQKRYAR
>NZ_CP044092.1|WP_099472635.1|377560_378499_-|nucleoside-hydrolase
MTHKIPLLIDTDPGVDDALALLMAFADERHDVVALTIAAGNVGLQYTVRNALKLCDIVGRTDVPVFAGSPDPLLHPSVDAAHVHGRDGYGDVDLPMPSRQAEAEHAALAILRLSHEHAGELMLVMLGPLTNLALALKLDPTLPERIKRIVVMGGAVTCHGNITPAAEFNIAFDPEAAHVVFTSFKHLLVSDWEATVAHGLPLQDAEKWLQADSDRARFYELISRKTRGLSEDSRGGRWYTADAVAMAWALNPEGQLRVESRPLNVELNGTFSRGATIVDWNRQTGQPDNCDLLMAYDQQRFEALVRQALGAD
>NZ_CP044092.1|WP_133050329.1|378968_381080_-|ATP-dependent-DNA-helicase-RecG
MARKAAVTPVLSPSGEASLAMLAGVGPAVAAKLQARGLATLQDLWLHLPLRYEDRTRLTRIEDLRNGVPAQVEGRVVAVERGMRYRPMLKVAVEDEGRGTLVLRFFHFRQQQVGQFAVGNRLRCFGTPKPGQLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPMTMRKLIGQALDRLPEESALELLPSGWLDGLGLPSLRSALLTVHRPPPDADLAALAAGTHPAQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLAKALLKQLPFALTGAQARVFKQIREDLARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWLEPLGVRIAWLAGKVTGKARAKVMEQVASGEAQVVVGTHALMQEAVVFQDLALAIVDEQHRFGVHQRLALRDKGAGGKSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQTVALNNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVHGRLKAAEKLATMVAFKTGDIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQTGLAGFRIADLARDAGLLPGVHDLAERLLDQQPTLADRVVQRWIGTAVRYASA
>NZ_CP044092.1|WP_005410875.1|381087_381474_-|RidA-family-protein
MSRQIINTEKAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGDIVGAGDVEAQARRAFDNLKAVAEAAGGSLDKVVRLGLYLTDLGEFAKVNAVMQDYFQAPYPARSTIEVSGLPKGANFEVDAVMVID
>NZ_CP044092.1|WP_150359264.1|381622_383785_-|RelA/SpoT-family-protein
MNPGPTAKVAAAPAAAVPDYVLQLERAAHYLPPEQLPLLRRAWEVGASAHAGQTRKSGEPYITHPVAVAQVLAELGLDVEALIAAILHDTIEDTPLTREALAAEFGEAVAELVDGVTKLDKLKFRDRQEAAAESFRKMLLAMSRDLRVIMIKLADRLHNMRTLGAQSREARGRIARETLEIYAPIAQRLGMSLVKSELQNLGFKALYPWRHAIIEKHIRSQPVVRREAMAQVEVQLSQRLAKEGIEHRLISRIKTPWSIYNKMRDENKSFDQVMDVFGFRLVVRSVPSCYHALGSVHATFKPLDGRFRDFIAIPKANGYQSLHTVLFGPYGSPIEVQIRTEEMDLIAERGVAAHWTYKFGGDSPNSAPSRAHAWIVELIDSQRAAGSSLEFLDNVKVDLFPDEVYLFTPKGKILALPRNSTALDFAYAVHTDVGNMAVASRVDKKLVPLRTKLVSGQSVEIITARSATPKPQWLEFVVTSKARTAIRHQLKQLEHEDAVQLGHRMLDRALEAMDSSLERLPKGRLDAFLAEHRFPRLEALLAEVALGNWMPTQAAQALMAYAELRGGPHSRHHSQEKILINGSERGVVTFAGCCQPIPGDEIMGYHTAGKGIVVHRMDCPNLAELRKSPERWVPIGWDTTVSGDYDTSLVVEVENGTGVLAQLAAAIAQSHSNIERVDYLDRDFNAAVLAFNIQVRDRNHLAEVMRRLRRLSVVQSVRRQ
>NZ_CP044092.1|WP_005410877.1|383890_384190_-|DNA-directed-RNA-polymerase-subunit-omega
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQATLDNSETEDKPTVLALREIAARKIDNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD
>NZ_CP044092.1|WP_049396152.1|384300_384966_-|guanylate-kinase
MSAASKPSDAVARGTLYIVAAPSGAGKSSIVNATLARDPQIALSISFTSRAMRPGEVNGQHYHFVSAEKFEQMIAAGDFFEHAWVHGDWKGTARQSVEPQLAAGQDVLLEIDWQGAQQVRQLVPGTVTVFILPPSKQALQDRMRKRGQDSEAVIAQRLGAARDEMLHFNEFDYVIVNEVFDTAVDELCAIFTASRLRREAQKVRHAGLIQALLTPDPGATD
>NZ_CP044092.1|WP_138464127.1|385257_388326_+|formate-dehydrogenase-N-subunit-alpha
MPSMSRRQFLKVTGTTLVGSSLALMGFAPGIALAEVRQYKLTRATETRNTCTYCSVACGILMYSLGDGAKNAEPSIFHIEGDPDHPVNRGTLCPKGAGLADIIHSKSRLLYPEYRAPGSNEWKRLSWDDALDRIARLMKEDRDANFVQKNEAGQTVNRWLTTGMLAASATSNETAVLTHKVVRSLGMLAFDNQARVUHGPTVAGLAPTLGRGAMTNHWVDIKNADLILIMGGNAAEAHPCGFKWVTEAKAHNKARLIVVDPRFNRSAAVADVYAPIRTGTDIVFLGGLINYLLTEDRIQHEYVLNYTDMSFLVKDEFAFKDGLYSGYNEEKRSYDRSSWDYAYGDDGFVRSDPTLKDPRCVYNLLKQHYARYTVEMVERICGTPADSIRQIWDMIASTAGKDKAMTILYALGWTQHSIGAQNVRAGTMVQLLLGNIGVAGGGMNALRGHSNIQGLTDIGLMSDLLPGYLTLPKQDEQDYEAYIAKRTQKPLRANQMSFWQNYPKFHVSLMKSWWGDAATADNNWCFDYLPKLDKPYDMLQAYELMNEGKIHGYICQGFNPLASAPNKGKLISAFSKLKFMVSMDPLETETIAFWQNHGALNDVDPSTIQTEVFRLPTTSFAEENGAVVNSSRWLQWHWKGANPPGEARSDIEIMSELFHRIKAMYEKDGGAWWEPVRDLAWNYANPEVPTPEELAMEYNGKALADVFDPKDPTKLVRKAGEQLAAFGDLRDDGSTASGCWIYIGAWGPTGNMMARRDNSDPTGIGNTLGWAWAWPANRRVMYNRASCDVAGKPFDPRRTLLAWNGKNWGSVDVPDFKADEDPAGGMGPFIMNPEGIARFFAKAGMAEGPFPEHYEPFDTPLRSNPLSPGQALTLNNPAARVFASDRAQIGSPDEFPHVATTYRLTEHFHFWTKHGKLNAIIQPEQFVEIGAALADELGINNGSRVRVSSKRGHIEAVAMVTKRIKALQIDGRTVHQVGVPIHWGFLGAAKPGYIANTLTNAIGDGNSQTPESKCILVKVEKV
>NZ_CP044092.1|WP_005410881.1|388336_389254_+|formate-dehydrogenase-subunit-beta
MSLQSLDIIRRSATTTPSPEARGAHTGQVAKLIDVSKCIGCKACQVACMEWNDLRDEVGSCVGSYDNPPDLSDQSWTVMKFREYEDEKGKLEWLIRKEGCMHCSDPGCLKACPSPGAIIQYANGIVDFQEENCIGCGYCVTGCPFDVPRISKKDHKAYKCTLCSDRVAVGQEPACVKTCPTGAITFGSKQAMTEHAAGRVEDLKSRGYENAGLYDPQGVGGTHVMYVLQHVDKPELYADLPKDPRISPMVEVWKGVAKPLGVLAIAATAFAGFLHYIGIGRNTVNDEEEEEAEHEAKKIEEEQRP

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Crispr_ID: NZ_CP044092_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_4

467341-467449

Orphan

Consensus_repeat	Method
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044092_4

>merge|NZ_CP044092|4|467341-467449|CRISPRCasFinder
CAGTGCCAACCAAGGTTGGCACCTACCAGGGCAAAGACCAGCTGCTGTAGATCCACACCATGCGTGGATGCATGCGTCAGTGCCAACCAAGGTTGGCACCTACCAGGGC

>NZ_CP044092|4|4|467341-467449|CRISPRCasFinder
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC	AAAGACCAGCTGCTGTAGATCCACACCATGCGTGGATGCATGCGT
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_005414410.1\|465516_466290_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183716
NZ_CP044092.1\|WP_005410947.1\|458494_458746_+\|acetolactate-synthase	unknown	unknown	gnl\|CDD\|226486
NZ_CP044092.1\|WP_005414414.1\|472702_473350_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
NZ_CP044092.1\|WP_024958464.1\|474812_476030_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129987
NZ_CP044092.1\|WP_133050316.1\|480390_481506_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340846
NZ_CP044092.1\|WP_005410959.1\|471885_472566_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP044092.1\|WP_005410951.1\|461527_462307_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP044092.1\|WP_049396209.1\|479078_480410_-\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
NZ_CP044092.1\|WP_100438093.1\|463785_464364_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP044092.1\|WP_114618200.1\|467471_470633_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP044092.1\|WP_005410961.1\|473366_474725_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP044092.1\|WP_150359271.1\|476246_477545_-\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
NZ_CP044092.1\|WP_043034051.1\|477605_478523_+\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	unknown	unknown	gnl\|CDD\|181542
NZ_CP044092.1\|WP_005410954.1\|464353_465415_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP044092.1\|WP_114618198.1\|456774_458511_+\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
NZ_CP044092.1\|WP_005410958.1\|470637_471768_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP044092.1\|WP_114618199.1\|459930_461517_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NZ_CP044092.1\|WP_065183159.1\|466407_467313_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_CP044092.1\|WP_099483928.1\|462367_463786_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP044092.1\|WP_033835631.1\|458842_459934_+\|threonine-dehydratase	unknown	unknown	gnl\|CDD\|236339

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_005414410.1\|465516_466290_-\|SDR-family-oxidoreductase	gnl\|CDD\|183716	PRK12744, PRK12744, SDR family oxidoreductase.	1.16492e-176
NZ_CP044092.1\|WP_005410947.1\|458494_458746_+\|acetolactate-synthase	gnl\|CDD\|226486	COG3978, COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown].	1.63788e-22
NZ_CP044092.1\|WP_005414414.1\|472702_473350_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	4.77111e-65
NZ_CP044092.1\|WP_024958464.1\|474812_476030_-\|hypothetical-protein	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	9.92284e-08
NZ_CP044092.1\|WP_133050316.1\|480390_481506_-\|glycosyltransferase	gnl\|CDD\|340846	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences. This family is most closely related to the GT4 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.	1.5437e-47
NZ_CP044092.1\|WP_005410959.1\|471885_472566_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	7.81558e-27
NZ_CP044092.1\|WP_005410951.1\|461527_462307_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.65828e-22
NZ_CP044092.1\|WP_049396209.1\|479078_480410_-\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	2.08154e-19
NZ_CP044092.1\|WP_100438093.1\|463785_464364_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	9.51424e-94
NZ_CP044092.1\|WP_114618200.1\|467471_470633_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP044092.1\|WP_005410961.1\|473366_474725_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.66583e-106
NZ_CP044092.1\|WP_150359271.1\|476246_477545_-\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0
NZ_CP044092.1\|WP_043034051.1\|477605_478523_+\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	gnl\|CDD\|181542	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase.	0
NZ_CP044092.1\|WP_005410954.1\|464353_465415_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP044092.1\|WP_114618198.1\|456774_458511_+\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
NZ_CP044092.1\|WP_005410958.1\|470637_471768_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.49891e-60
NZ_CP044092.1\|WP_114618199.1\|459930_461517_+\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NZ_CP044092.1\|WP_065183159.1\|466407_467313_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.473e-95
NZ_CP044092.1\|WP_099483928.1\|462367_463786_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP044092.1\|WP_033835631.1\|458842_459934_+\|threonine-dehydratase	gnl\|CDD\|236339	PRK08813, PRK08813, threonine dehydratase; Provisional.	0

>NZ_CP044092.1|WP_065183159.1|466407_467313_+|LysR-family-transcriptional-regulator
MDRIDRFRIFTRVVECASFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVSTTHDGDVFHARCLRLIAEVEDAESLFRQDDAQPVGLLKIDVPSRIGRRIIAPALPDFFARHPQVEVDLGMTDRAVNLIEDGCDAVLRVGQLGDSSLVARTLGQLDFVNVAAPAYLREYGVPQQPADLQQHRAVNYASPTTARVEPWEWQEGTQLRTLPMPGWVRVNSAEASIACCVAGLGLLQIPRYDVQAELQSGALVEVMPQHVAQPLPVTLLQPHRQHRAQRVQVFIEWLLPVLRSGLQLQ
>NZ_CP044092.1|WP_005414410.1|465516_466290_-|SDR-family-oxidoreductase
MTDHSLKGKTVLIAGGAKNLGGLIARDFASQGAKAIVIHYNSAATQADAEATVAAVQAAGSKAVALQGDLTSAAAMERLFADAVAAVGRPDIAINTVGKVLKKPLLEISEAEYDEMSAVNAKAAFFFLKEAGRHVNDGGRICTLVTSLLGAFTPFYSSYAGTKAPVEHFTRAASKEFGERGISVTAIGPGPMDTPFFYPAESADAQAYHKTAAALSAFTRTGLTDIADIVPWIRFLVTDGWWMTGQTILVNGGYTTK
>NZ_CP044092.1|WP_005410954.1|464353_465415_+|3-isopropylmalate-dehydrogenase
MHAEIVVLPGDGIGPEVAAAAVAVLKSVATRFNHTFTFSEHDIGGIAIDRHGEPLPASTLTACQAANAVLLGAVGGPKWSDPNAKVRPEQGLLAIRKALGLYANLRPVRTHEAALHASPIKAELLQGVDFVVVRELTGGIYFGDKTRDADSASDLCRYTVAEIERVLRSAFRLARQRRGKVTSVDKANVLETSRLWRDVAARIGREEFPDVALEHQLVDSMAMHLLAKPREYDVIVTENMFGDILTDEASMLAGSLGLLPSASLGEPGAVGIYEPIHGSAPDIAGKGIANPYATIFSAAMLLRHSLGLETEAAAVEAAVHAVLDDGVFTADLAAKGQAVSTAAATDAVLAKLN
>NZ_CP044092.1|WP_100438093.1|463785_464364_+|3-isopropylmalate-dehydratase-small-subunit
MAGFRTLTSASVVLRQTNIDTDQIIPARFLSTTERAGLGRNAFNDWRWQADGSPVADFAFNQPHNAGRSILLAGRNFGCGSSREHAPWALTDLGLRAIVSSEIADIFRGNSLKNGLLPIVLDEADVQALMQRPDDELTIDVAARELRTPDGHVYSFPLDGFSQTCLLEGVDQLGYLLGRVPEIERYESEHAR
>NZ_CP044092.1|WP_099483928.1|462367_463786_+|3-isopropylmalate-dehydratase-large-subunit
MTSAPRTLYDKLWDAHVVVPETDSAPAVLYIDLHLIHEVTSPQAFTELRERGLSPRRPDRTKATMDHSTPTLPPAADGTLPYASAASEAQVATLARNCAEHGIELFDMASDNRGIVHVIAPEQGFTQPGMTIVCGDSHTSTHGAFGSLAFGIGTSEVGHVLATQCLLQRKAKTFAITVDGPLAPGVGAKDVVLHIIGVIGVNGGTGHVIEFRGSTIEAMDMEQRMTLCNMSIEAGARAGMVAPDQVTFDFVAATPRGPKGADFDAAVARWQQLRSDDGARFDSEVHIDAADIRPTLTWGTHPGTAIAVDAPIPAANDAAAQKGLDYMHFQAGKALAGTPVDVVFVGSCTNGRLSDMREVAQVLRGRRVADRVRMLVVPGSEIVKREAEAEGIHEIVRAAGAEWREPGCSMCIAMNGDLVAPGQLAVSTSNRNFEGRQGPGSRTLLASPMSAAWAAVNGHVADTRKLFAQEVA
>NZ_CP044092.1|WP_005410951.1|461527_462307_+|class-I-SAM-dependent-methyltransferase
MSAFDTFTPASAAGQQWNAQDYAIDAGFVPLLGGAVSRLLDPRAGERILDLGCGDGVLSTELALSGARIHGVDASPELVVAARARGVDAQVMDGHALSFDSEFDAVFSNAALHWMTTPDRVLEGVRRALRPGGRFVAEFGGHGNVATIIAAVQAARVAHGHGASTFQWYFPTADAYADRLRQHGFQVQLIECTPRPTALPTGVAGWLRVFAAPLLDDLPAEARATVREAATALLAELPRNAAGQPLADYVRLRVLARRR
>NZ_CP044092.1|WP_114618199.1|459930_461517_+|2-isopropylmalate-synthase
MTTIERITTPRIRIFDTTLRDGEQSPGCSMSPPQKLVMARALDELGVDIIETGFPASSQSDREAMALIGRELRRPSLSLAVLSRCLQADIETSARALEAAANPRLHVFLSTSPLHREHKLRMTREQVLESVRKHVSLARSYIDDVEFSAEDATRTELDYLIEVACVAIAAGATTINLPDTVGFTTPEEIRAMFQQVIAGVADVPNAANVIFSAHCHNDLGLAVANSLAAIEGGARQVECTVNGIGERAGNCSLEEIAMVLKVRQAFYEQDSSINTPRIVGTSQLLQRLVGMPVQRNKAIVGANAFAHESGIHQHGMLRHRGTYEIMRPEDVGWEDSQMVLGRHSGRAAVEARLRALGFWLDEDELKLVFEQFKGLCEQQRVVTDADLQTLMQGGSNAQGYRLASMTISDVGSRANALVELSDPDGNRVAETAQGDGPVDALFGALSAATGVQLMLDSYHVHSVGIGADARGEANLSVRHEGVEYDGTGTSKDIIEASALAWLDVANRLLRQRQATAHNSTDVPTPATA
>NZ_CP044092.1|WP_033835631.1|458842_459934_+|threonine-dehydratase
MPAADTSQESDVGDVSVADVLAAQARLRRFLPPTPLHHAERFGTWLKLENLQRTGSYKVRGALNALLAGRERGDTRPVICASAGNHAQGVAWAAYRLDVPAITVMPHGAPATKIAGVAHWGATVRQHGNSYDEAYAFAVELAQRHGYRFLSAFDDADVIAGQGTVGIELAAHAPDVVIVPIGGGGLASGVALALKSQGVRVVGAQVEGVDSMARAIRGDVREIAPVASLADGVRVKIPGFLTRRLCTSLLDDVVIVREAELRETLVRLALEEHIIAEGAGALALAAGRRVAGRRKCAVVSGGNIDAGVLAGLLTDIRPRPPRKPRRRRSETPRSPAKASAPPSPMPSPSHLQAATPAVEEISL
>NZ_CP044092.1|WP_005410947.1|458494_458746_+|acetolactate-synthase
MQYRLDLVLHPAEGALLRVIGMAERRGFAPRAISGAPVAADDGRWHLQLVVDGQRPAETLCRQIEKIYDCVSVQVTAVEGVSP
>NZ_CP044092.1|WP_114618198.1|456774_458511_+|acetolactate-synthase-2-catalytic-subunit
MNSSTHRSAPPNGARWLTQALEAEGVRTLFGYPGGTIMPFYDALVDSSLKHILVRHEQGAALAANGFARASNQVGVCVATSGPGASNLVTGIADAMLDSVPMVCITGQVGTPLLGTDAFQELDVFGMTMPIVKHSWLVRSVDDLPRVVADAFRIAREGRPGPVLIDLPKDVQLADASHLPAHVPSSVEPPPAPAEAAIAEAIAALAAAEKPVVYAGGGIALGDAVQDLRDFVEASAIPTVMTLRGLGALPAHHPQSLGMLGMHGTRAANMAVQESDLLLVLGARFDDRATGKLAEFAPFARVVHIDADAYEISKLRSADVAVPGNVGHAIRALRAAFPSPKAHQDAWRKRCAQHRDRFAARYDAPGQHIYAPALLRRLSELAPADAVIACDVGQHQMWVAQHCRFNHPRNHLTSGALGTMGFGLPAAMGAQFACPDRTVVLVSGDGSFMMNVQELATIARCRLPVKIVLLDNSSLGMVRQWQELFFAERYSEIDLSDNPDFVALSQVFGIAATRIDNRDDVEGGLAALLAEPGPALLHVAIDARANVWPLVPPNTANSTMLESNPAHARQEIPNAIPA
>NZ_CP044092.1|WP_114618200.1|467471_470633_-|efflux-RND-transporter-permease-subunit
MRRFNLSEWALANRPLVLFAMLAFALIGAWSYKHLGQSEDPPFTFKAMVVRTLWPGATAEQVSRQVTEPIEKALMNTGEYEFIRSYSRPGESQVIFMARDSLRSRQIPDLWYQVRKRVGDIRATLPREIVGPFFNDEFGDTYGNIYALTGKGFDYAVMRDYADRIQLELQRVPDVGKIDLVGLQDEKVWIELSNTRLATLGVSMQQVQQALADQNAVTGTSFFETATDRVQLRVTGQFNDIEAIRQFPIRAGDRTVHLGDIAEVKRGFADPASPKMRFMGEEAIGLAVAMKDGGDILKLGANLDAEFERLQKTLPAGMQLRKVSDQPQSVEESVGEFVQVLTEAVVIVLLVSFFSLGLRTGLVVGVTIPLVLAMTFFVMHYFDIGLHKISLGALVLALGLLVDDAIIAVEMMATKMEQGYDRLRAASFAWESTAFPMLTGTLITAAGFLPIATAASSTGEYTRSLFQVVTIALVVSWIAAVLFIPYLGDKMLPDLFNPQPPKPGSVSSRWHAKRQQWADRYPALANLIAPPQHGHDHDPYQRPFYRSFRRFLDGCLRHRWWVIAATIALFVFSLMMFRFVPQQFFPDSTRPELMVDIELAEGASLRSTQAQAEKLEKLLSSREGIANYVSYVGTGSPRFYLPLDQQLPATNFAQFVVLAKDIKSRESTRDWLLHEVIPKFPDVQMRVTRLENGPPVGYPVQMRISGEHIEKVQAIARQVEAKVRENPHVMNVNLDWSEPSKVVRLVIDQERARALGVSSAQVSQFLSSSLAGQSVSVYREGNRQIEMLLRGPADERNQLELLSSLSMPTANGGSITLSQVATMEYGFEDGIIWHRNRLPTVTVRADISDGMQPLDVVHQILPTLDGIRAELPNGYLLETGGTVEDSARGQNSIKAGMPLFLVVVATLLMLQLRSFSRAAMVLVTAPLGIIGATLFLLLFRAPFGFVALLGTIALAGMIMRNSVILIDQIQQDIDAGHDRWHSIIDATVRRFRPIVLTALAAVLAMIPLSRSAFYGSMAISIMGGLIVGTVLTLVFLPALYAAWFRVKPDESGA
>NZ_CP044092.1|WP_005410958.1|470637_471768_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKIVRWMGGMVWVAALAACSGQEQAPQAAVPVLVVHPGEQAGQAPAAFPGTVRARQESPLSFRVGGNLVKRHVDAGQRVKKGDVLAELDVADFALQARASQAQLAAAEADLVRARDDLKRYQVLADQQLVSRSQLDQQSAAFKAAQGQANAARANLDVLRNQADYAQLRAPADGVIASREAEAGQVVSAGQTIFNLAADGGREVLIDLPEATIRDYAVGQPVEVELWNRPGQRLPGTIREIAAAADPQARTYATRVSLAADALADVELGQSARVYSSAGRHGTLQLPLGALQRGANGAASVWVVDPANSTLKAASVTTGAFGSETVPVLSGVNAGDWVVAAGGHLLRAGQPVIAVDRQNRPVLKPAAPAAAAKAKE
>NZ_CP044092.1|WP_005410959.1|471885_472566_+|TetR/AcrR-family-transcriptional-regulator
MSSSTSRKPSAKPAAKAAGPGRPKDLGKRAAILEAAKVLFIEQGYTGVSMDAIAAQAGVSKLTVYSHFGDKETLFSEAVQSKCIEMLPDALFVADADGPLRDQLIGIGLAFFELITSDAAISIQRMMMAPETDERLRELFWKAGPERTCEALADFLRARAERGELEITDYSLAGEQFLTLVKGEVHMHMMCGMPLSPVECDPLAHVTASIDFFLRAYAPRGAGTAE
>NZ_CP044092.1|WP_005414414.1|472702_473350_+|protein-L-isoaspartate-O-methyltransferase
MTIDYAHARELMVEQQIRPWDVLDIKVLDVLARLPREAFVADAHRALAYADVELPIGHGQKMMKPVIEGRTLQALDLQPGDEVLEIGTGSGFLSACIGALARDVLSLEIDPELAAAARARLDASGLGTNVRVEVADALSWQTERRFDVICVTGAVDVVPSQFASWLRPGGRLFVIHGRSPAMEALLVKADGSTESLFETDIDYLRGAAPAPQFHL
>NZ_CP044092.1|WP_005410961.1|473366_474725_+|TolC-family-outer-membrane-protein
MIRRSLAVALATALLPLSAHAADLLQVYEMARNGDPQLSAAESTRLVDKEGAVQARAALLPQINGQATLNRTRSEPNADINSGSFTNKRRNYTIDGSQTLFNWTQINNLRSQRELSKAADFTLESANDSLIVRTSAAYFNVLVAIESLNAAQTNEAAAKKQFDFADKRLEVGLAPITDVHEARAQYDQARANTIVAQNTLADNYQALTELTGQPVVNLRGLPADFRPEVPANRGNIDELVHQATTQNPALKAQELKVSAAEAGVQAARGGHYPTLSLGGSWGKTATWGDSTGSGSLSPDARTNSIGLTLNVPIFAGGATQSGVRQALAQRDIAQDGYEQQKRALDRNTRNAYQTLVQGISEVEARRLAVVSAQSAYDASQVGLEVGTRTVLDVIQNQRILFSAQLDYAQARYTFLQNRLLLSQSLGALDVAELQDVNRLLTQDAGNPATTTH
>NZ_CP044092.1|WP_024958464.1|474812_476030_-|hypothetical-protein
MDSDSSPGIDEPGYGDRLVVVALTLLLGGGVVALVGQHTAAQAGPAIVLSLLLAALGTGPLLYCLHVLNQQRPAADGLHGVVRDCWGGVPAVLLGGALLLELVVTAAGVAQSVANHLHVLLAGCGIEASNGMPGQLMAAASLLLLAVVGLLRPHRVVLVACVLLTVKVGAGLLLLVLAARHVHYAYWIPWLPPATAPYRFGIGGVLAASVPLYGVFATVGLALGFPGIGRQARARPPLLPACVLLAMVLLIVLAALQAGLVEFPALASTRPLSVALQHHPQLYWVMPLLPLAGVAGLVALILVLLMLAAQVAMQLWPTAGDRSLEFRERLVPVAVVLPAALLALWAPMGSLPVLPGPATLLVMGAVCVAVLRGRAQRSRALPVLAPVAIALCLLAAVERMRVWPG
>NZ_CP044092.1|WP_150359271.1|476246_477545_-|3-deoxy-D-manno-octulosonic-acid-transferase
MRKDPVEWILRGLYSVVLYILLPITVYHLVWRGFRVREYFRRWDERYASYPQPTGQPRVWLHAVSVGEVNAAAPLVNALRKERPDIRWVITTITPTGSERVRALWGDALDHVYLPYDVPGSVNRFLGHFQPSLALILETELWPNMLFGCRDRGIPVYILNARLSARSLRGYRLLAALIRRALRTVTCVAAQSQDDAERFVQLGAAPEQVQALGNLKFDITTPDVQGFVEQFHARVPARRPVWIAASTHDGEEQAVIDLHRRLRRQHPDLLLLWAPRHPERFPKVEALAREQGWNVATRRAKQWPEAGTDVFVIDTLGELMPFYACAQVAFVGGSLQSIGGHNLLEPAAMGTAAVTGPHLHNFSEISRRMREAGALLIGEDVQAVGELLQHLLEDPQAREDMARAGCTLISNGRGALQRTLALVGPHLPPPCR
>NZ_CP044092.1|WP_043034051.1|477605_478523_+|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase
MSDATTAVRPSLRDPRNWPMFAAMLGAFAIARLPWMLQRALGRGVGWITWRLLGSRRRAAEVNLQLCFPEKDEAWRQRLVRDSFDALGVGVFECIRAWWGSIDSIRPQVQIEGLEHLRQMQAEGRGVLLVSGHFMTLEMCGRLLCDYVDLSGMYRKHKNPVYEWAVKFGRLRYAKAMFANEDIRATVRHLKKGGFLWYAPDQDMRGKDTVFVPFFGHTASTITATHQLARMTGCAVIPYFHRREGGTYFLKIGAPLENFPSDDVEADTTRVNQAIEEMVREAPDQYLWIHRRFKRQPGGRSDFYK
>NZ_CP044092.1|WP_049396209.1|479078_480410_-|O-antigen-ligase-family-protein
MPTSPADPAVIVRDDRAGRWAPWWVLAYVAMWPLPGIAETVLGLGALYAAARMVTRRLQRRPHLLSTAAWALTSILFLGYWLPQAFSAFDAIDPAASWTKAAAGLRYLPFMWLVAIAVATPERRRLTFAGLALITGAWTLDALVQAVAGTSPWFWSLEHLKLAVSGHALCPADEAALADRLSGALGPCNLKFGQVLASLSPFLLLPAARRFGNTGWLLAAAALGSVLLLAGSRASWITFALVLAYSGVRQFGWKRLAALALVAVLGAGALTASVPQLRERFARTAMALDGGERGVDEALSGRARIWEAAACMIEEHPINGVGARGFRDAYPACVAEEGPAVWGNAPALHAHQIVLEILAETGVIGLLLWLAAVAQAWRAWRYAPAMARERARPAMLALAVTVFPLNTHLAFYSAFWGGLTVLLAALFAGSLLARDADDTPTAV
>NZ_CP044092.1|WP_133050316.1|480390_481506_-|glycosyltransferase
MRRLTVVQLLPALHSGGVERSTLEIAAALVAAGHRALVVSAGGRLVQPLLDSGAEHLSLDIGRKSLLTLRHLPTLRRLFAEVGADIVHARSRLPAWLGLYAIRALPAAQRPHWVTTVHGLNSPSRYSAVMTSGERVICVSNTVRDYVQRHYPTVPEQALQVIPRGVDVAQFPRVARADRRPRMALAAEYPWLAQVEGPLLLLPGRGTRLKGHAHALQLLADVRAAGVPAQLWMLGTDEAGREAYVADLRRQAAALGVAEAVHISTPTARIAQAYAASDLVLQLSDKPEAFGRTVVEALSVGRPVLGWDHGGVGELLRQLQPAGAVPLGDARALGERALALLAQPPSLPTRIPFTLQAMQRDTLRLYADLAG

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Crispr_ID: NZ_CP044092_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_5

564836-564966

Orphan

Consensus_repeat	Method
CGACCAAGGTCGGCACCCACCAGAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP044092_5

>merge|NZ_CP044092|5|564836-564966|CRISPRCasFinder
CGACCAAGGTCGGCACCTACCAGAGCAGGTCATGGCAGTGGAAAGCATCGTGCCGACCAAGGTCGGCACCCACCAGAGAGGATCATGGCGTCGATTGGCCCTGTGTCGACCAAGGTCGACACCCACCAGAG

>NZ_CP044092|5|5|564836-564966|CRISPRCasFinder
CGACCAAGGTCGGCACCTACCAGAG	CAGGTCATGGCAGTGGAAAGCATCGTGC
CGACCAAGGTCGGCACCCACCAGAG	AGGATCATGGCGTCGATTGGCCCTGTGT
CGACCAAGGTCGACACCCACCAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_049402429.1\|580791_581184_-\|membrane-protein	unknown	unknown	gnl\|CDD\|227939
NZ_CP044092.1\|WP_060380657.1\|558024_558432_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP044092.1\|WP_005411035.1\|562074_562509_-\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP044092.1\|WP_134948574.1\|557673_558015_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_049396480.1\|554449_557311_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP044092.1\|WP_049460420.1\|569386_570535_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|224733
NZ_CP044092.1\|WP_150359282.1\|558582_560568_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|183236
NZ_CP044092.1\|WP_043034012.1\|562558_562894_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_049396482.1\|554003_554405_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_099524302.1\|578328_580686_+\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119333
NZ_CP044092.1\|WP_049396468.1\|568319_569387_-\|DUF1624-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NZ_CP044092.1\|WP_005411044.1\|570534_571563_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225132
NZ_CP044092.1\|WP_099561541.1\|562897_563935_-\|peptidase	unknown	unknown	gnl\|CDD\|367567
NZ_CP044092.1\|WP_150359283.1\|564991_568021_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|238654
NZ_CP044092.1\|WP_005414491.1\|575508_578217_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP044092.1\|WP_133050305.1\|571570_572638_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487
NZ_CP044092.1\|WP_099498206.1\|572677_573967_-\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NZ_CP044092.1\|WP_099484755.1\|560774_561995_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP044092.1\|WP_065183190.1\|564347_564782_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_024957032.1\|574345_575365_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|237092

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_049402429.1\|580791_581184_-\|membrane-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	0.00069894
NZ_CP044092.1\|WP_060380657.1\|558024_558432_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.10563e-31
NZ_CP044092.1\|WP_005411035.1\|562074_562509_-\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	1.24916e-09
NZ_CP044092.1\|WP_005411044.1\|570534_571563_-\|SIS-domain-containing-protein	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	1.67347e-114
NZ_CP044092.1\|WP_049396480.1\|554449_557311_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.26575e-29
NZ_CP044092.1\|WP_049460420.1\|569386_570535_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|224733	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism].	7.78572e-164
NZ_CP044092.1\|WP_150359282.1\|558582_560568_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	3.4772e-73
NZ_CP044092.1\|WP_099524302.1\|578328_580686_+\|family-20-glycosylhydrolase	gnl\|CDD\|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
NZ_CP044092.1\|WP_049396468.1\|568319_569387_-\|DUF1624-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	4.46701e-50
NZ_CP044092.1\|WP_099561541.1\|562897_563935_-\|peptidase	gnl\|CDD\|367567	pfam03572, Peptidase_S41, Peptidase family S41.	1.32628e-10
NZ_CP044092.1\|WP_150359283.1\|564991_568021_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|238654	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.	5.5885e-38
NZ_CP044092.1\|WP_005414491.1\|575508_578217_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	7.41609e-173
NZ_CP044092.1\|WP_133050305.1\|571570_572638_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.41077e-118
NZ_CP044092.1\|WP_099498206.1\|572677_573967_-\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.13185e-120
NZ_CP044092.1\|WP_099484755.1\|560774_561995_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NZ_CP044092.1\|WP_024957032.1\|574345_575365_+\|ROK-family-protein	gnl\|CDD\|237092	PRK12408, PRK12408, glucokinase; Provisional.	0

>NZ_CP044092.1|WP_065183190.1|564347_564782_+|hypothetical-protein
MNTPHPTYPRLQALLGAALPGLQLPTTAAEALEDALAEANEQAPPSAFFARLRDIAHSHAADGQAWRERQLSEGRGRELAEATRCLAALSACGGVLLAAQSARETDDAQAQCPPQVEEGLLHAMVVLADHAGALVEPDACAPLL
>NZ_CP044092.1|WP_099561541.1|562897_563935_-|peptidase
MQVRKGVRRIGALMLVLLATGAMADTPGAVEVPSPEAQAEILNLLERQALYRDRVDWVATRTRLQSAQGDPAQRLAVLREATALSTDNHGGWTTTQRQSESLARAQQAGAAAVDRAKAADAVDMRIGWVVIEGYASTPGATPQEKFRQDIQRAARWQQVIRSKDDGARCGWIVDLRDNSGGNMWPMLLGMAPLLRTSVVNNEDVGSFETAQGPERWTLTATAVQRAGKSVLDFGQSGYVLRQPGAPVAVLFGPRTGSSGEASVLAWRGRPQTRSFGQPTAGVSTGNVVQTLADGSRLLLTTTVMRDRNDRGDGLKIEPDQRIEGDAATLAAAEAWLLAQPACQGR
>NZ_CP044092.1|WP_043034012.1|562558_562894_-|hypothetical-protein
MILIGQQERVVVVGPTEAHHCLRCQTETEFAPQLRYKMARIDLLFGLTYQRRYELACTRCGHGWVLDTETMDQQLGGVPIPWRHRFGLPLMLVGVAGLAALGWLWRHGFLG
>NZ_CP044092.1|WP_005411035.1|562074_562509_-|SseB-family-protein
MDHDTPFEPLNDLEVRLLQAQDGTLTASQFLDGLLTSTAFVLLDKAIGEDGAWDESISPLVLTSESGEPMFAVFTAPERAGLWHEQLPQFAHAMPIAVHALLAGIGDGVGLVLNPGLDVGMEMIPDAVAQLKQRAAAITRGMAH
>NZ_CP044092.1|WP_099484755.1|560774_561995_+|multifunctional-CCA-addition/repair-protein
MKIYLVGGAVRDRLLQRPAGDHDWVVVGATPAQMEAQGYTAVGRDFPVFLHPKTGEEYALARTERKSGRGYRGFVVDADPGVTLEEDLQRRDFTINAIACDEDSGALVDPYGGVRDIEQRVLRHVGPAFVEDPLRVLRAARFMARFAPLGFTVAPETMDLMREIAASGELDALVPERVWQELRKALVSERPSAFLRTLHDAHALGPILPELEALYGVPQRAEFHPEVDTGIHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPEEWPRHIMHEQRGIQPLKALCARLKIPAEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRGRLGFEDADYPQGETLKRLHQAALSVQARDLDTTHLKGPAIGEALAKARVKAIAAAR
>NZ_CP044092.1|WP_150359282.1|558582_560568_+|transglycosylase-SLT-domain-containing-protein
MLGAMTRRSSTALSLLPLATSLLIGCANAQSLDAQNAQLKAAIAAAERGQFDPGQAAALSRHPAYGWLEYANLRRNIDTVDTAQAQAFLKRYDGQAVANTFRSVWLPSVARRQDWPTLLANWAPTDNVGLRCAQLTARQMTGKVDPQWISEAQDLWRKNGKSLPDGCEAVFAVLQAQGGLSDALRWERIDAAADAQQPAVMRSAARGLPATDLALANNYAAFVDKPNASALNWPRNERSRRIATDGLAKLAKADPAATEQQLPQYAQALGLSAEQQGQVLYQIALWTVASYLPDSARRLNAVPESAYDERLHEWRVREAMSRGDWPAALTAIRKMSSKQRSDPRWRYFEGRMLEKTGQSQQAQPLFREAARAPTFHGFLAADKLQQGYTLCPWRPNDSAQAQAVIARDPAIQRAMALYQIDRTGWAVAEWNSALSRFDDTQRRLAVRVAQDNGWFDRAVFALGKQPQEQRLYDLRFPLHHDATIRRESARNAIDPAWVAAEIRAESTFTPRARSPANAMGLMQVLPATGAGVAKSIGLTGYGGADSLYDPDTNIAIGTAYLRQLMNKYDGLPYVTIAAYNAGPTPTARWQSQRPGFDPDLWIETISYKETREYVARVLAFSVIYDWRLNGDALPLSDRLMGRLVDKRKNFSCAANAEQGGD
>NZ_CP044092.1|WP_060380657.1|558024_558432_-|biopolymer-transporter-ExbD
MAFSSAGRSGPLTDINVTPLVDVMLVLLIIFIVTAPIVARPIAVQLPQSTDHTIDRLEPPPPIELSLDAGNQLSWNGQPMVIGDLQARLQAQVGEHAGNLPELRIATDPAAEYEGMARILAAAEATGMERIAFVR
>NZ_CP044092.1|WP_134948574.1|557673_558015_+|hypothetical-protein
MKAATAVPGVMMVLTLLLSLAGESRAGGVIECNNCPSPSDAALASGEGLTVVVDFERAELTAFDVEHDPESRKWRAHPTAVPAQIEMAFLRILDATLSAGQAPLMQQSPHERQ
>NZ_CP044092.1|WP_049396480.1|554449_557311_-|TonB-dependent-receptor
MIHLHHRPLAVAVALCVTALAPLGAAAQSTTNLDAVEVTGTRIKRAEVEGQVPIQTLTRGDIERTGLTSIGEVLQQLTGSGSALNAKFNSSGNFGFPPDGSGVGAGSAQVDLRHLGAKRVLVLVDGIRWVNESSASGVGSATDLNTIPLAIVERIEVLEDGASSLYGSDAIAGVVNIITRRDFDGGQVTLNYGEYSKGDGTQKGVDLAWGKSGDRFSLFLGASWTKQDPVFAKDREQSRFPIPGTGLAFGSGGIPQGRFMFTDPNTGAVQNIVPNTGVSNPRYDGSAGCSRTDDYHCFTTADRFNFAEYNMVLTPSERKGLFGQFRFDITDNVQWYVKALGNRRESTNQAGPEPLFFGPDGATGNPLADNIVVSRLNPYNPFGFDLVSGDNMSLIGRRPVEGGARVFKQKVDTTYFATGLVGDFHAADRSWYWDVNGMYSKNKAEQTNYGSYDIYKVNMALGDPSVCAATPGCVPLNIFGGVGSITPDMLKWIQPVVRDRSQNELSLFTANLSSELFSLPAGPVSFATGFEYRKYKGSYQPDPLTVIGHYNGVPSQPTSGSYDVNEAYLELSVPIFADSSFGKKLDLSLAGRYSDYSTFGGEFTPKYGLRWQVTDDFVLRTTYAEGFRAPSIGELYGSAARADLQLFDPCSVGLGGTPPRGSAANCAALGVPAGFQQANSQISVTTGGNRELEPERSRSFSAGFVWSPWFGNNASWSERFDVEVTFYRHAIDGAIQAINAQTQLDLCVDTLDPIYCDGITRASTGAVSSFNNRLTNLGSIKTDGWDVDLFWTLPQTSIGQFKLAWKNTFVGRYEATGAAGQKQPQKPGVEVADSSIPEWTSNASIGWTMDRWSANWTVRHISELTENCGDAAAFPVCSNQAAGTNTLSATTFHDMQVGYKIDWMKGLQLTAGLNNVFDKDPPICLSCSLNGYDASTYDIPRGRYWYLRADLRF
>NZ_CP044092.1|WP_049396482.1|554003_554405_+|hypothetical-protein
MALFSSPPLMIGTGNGYFILLLLIGLPAAILSWFDLGRELRAIPSPTRTERALGLAMGVPQVLFGLLCAVIGLLLVAWILYNLLIEHQSQFRIPSLPAFAAGPMMIVVGLGWARTAFRRAALEQDAPEQDIPD
>NZ_CP044092.1|WP_150359283.1|564991_568021_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MYRAVPRAFRPRRLAVSVLQALAVPSLLLTTASVAWAGCNSPAPTAGQTVTCDTNAPNPQTTPVTANGAAGITVNVAAGAQLQQSGGGSAIALVGAGGHLLSNQGAISSVGGVTVQLGGGSRVDNTGSISTGNNTALQFVGAGDSVLVNRGTISGRTGVQFDAGNDRLEMQSGSISGGILQGDGNDVLLLSDGTIDSVDQGGGDDQMTVTGGAVTGVVAQGSGRDDFNMSGGTIGALQQGDNIDTFRMSGGRIIGAFEDGDQAWMTAGRIGRVNMKLDKNLWDQSGGTVDGNVVTGFDTDTIIISGTAYIGGNISVSGGNDSVTITDGTVRGQVLLSTGSDTFNWSGGGIVYGAIDMGPDNDVANLSSLNQGNLGAVPLFDGGSGIDQLNFNNVKTTGVGRFQNWEAISLANSTELTFDGDLVLGDSGTGTGTLTVDDTSTVYAGSGSHAVRPFNSGGLVEMVNAGRIDLTGTGAGDVFTVRGNYRGDGGGLYLRTVLGADNSTSDRLVIDGGAVTGTTGIGVLNAGGSGAATLADGILVVQALNGGRTAPGAFSLFAPVAAGAYEYFLFKGGVSAGTSENWYLRSTLVAGPAPAPNGSGINGVPPPPTPPVAPPPPITPAPPPPPEGATDPDLTAGETAPPPPPPEPAPVAPPSDPAVPDVPMAGGALPGTGTPPTPGARPAEGAVVPLYRVETAAYAVVPPLLRETSLASLGTFHERQGEQRLLYSQGAFRTAWGRLVGQSSEIHWEGDAQPGFDGDVIGLQAGIDVWAAASDSHRNQIGMFVGRTRAQGKTTGLALGWENVQVGQNRLDDKHVGLYWTFTGSSGGYIDAVAMQSRYDGRVRSSRGLGFGIKGDGTSVSVEAGKPLLHFGQSAWWLEPQVQVIWQRTSLDDRRDAVSSVRFDNDNAWTGRVGLRLAGDYQLADNGWQPYFKLNYWHGRSGEDRIRFDDDVIFNSQRSRALEAGVGVVGRFNRTISAYAVADYTRELGGDRNEKRRIIEGNIGLRADW
>NZ_CP044092.1|WP_049396468.1|568319_569387_-|DUF1624-domain-containing-protein
MNSSPPRRLGSIDALRGITVAAMLLVNNPGDWSAVFAPLRHSEWHGCTPTDLVFPFFLFLVGVSMAFSVAPRAQDAAARPALARGVLERALRILVAGALLHLLIWWALDTHHFRIWGVLQRIAVCAALVGVLAVYVRPRVQVGALIALLVGYTVLLLGIGDLAPWTNPASRLDTALFAPWIYQWHADTGLGHDPEGLLSTLGALASTVLGLLAGGLLRNGRSAALAGLGVATAVLGLLLAVVLPLNKQLWTPSYVLWTGGLAALALWLGHVLIDQKGWPALGRRFGVNAITAYLGASVMSVVLMATGIWGWIWQQLATAMPQALELASMLQALVFVALWWGVAWWLDKRKIYLKI
>NZ_CP044092.1|WP_049460420.1|569386_570535_-|N-acetylglucosamine-6-phosphate-deacetylase
MVTVLRNARILAGDDFRDDLALVIENGRISALLPDAAPQLGHAAEQVDLGGGWLLPGFIDVQVNGGGGALFNNTPDVAALRTIAQAHRRFGTTAMLPTLISDDVAVMREAIAAMREAITQGVPGVIGIHLEGPYIAPARKGTHDASKFRVPDEGEIALAASLDNGVTVLTLAPERVPLETIRALVERGVIVAAGHTAGTYEEIRAGLDAGVRGFTHLYNAMSPLQGREPGAVGAALEDRDSWIGIIVDGVHVHPASLRVALAAKPRGRLLLVTDAMPPVGADDPSYVLYGETITAVDGVVRNAAGSLAGSALDMATAVRNTVQLLGQPLAEAARMASTYPAQFLNVDDRLGHIAEGYQADLVLLDDALQVRGTWIAGQYEAA
>NZ_CP044092.1|WP_005411044.1|570534_571563_-|SIS-domain-containing-protein
MSLSDPTSTLMFAEAAEAADVVARQFSRNHATMETLAASLRAAPPPFVVTCARGSSDHAATYGKYLLETQLGLVVASASPSVGSVYAAPLQLRGALFIVISQSGKSPDLLRNAEAAKAAGARVIALVNVEDSPLAQLADTVIPLHAGAEKSVAATKSYLASLAALLQLAAYWKQDSSLRAALDLLPDALREAWQCDWSAVTEGLVEATNLFVLGRGLGLGAAQEAALKFKETCSLHAEAYSSAEVKHGPMALVDRGFPVLAFAQPDETGAGTRAVVEEFTARGAQVWMAGAGGNLPVAAAPHPLCAPLLTVQSFYRAINALALRRGFNPDLPPHLNKVTETV
>NZ_CP044092.1|WP_133050305.1|571570_572638_-|LacI-family-transcriptional-regulator
MRRATIKDVAEKAKVSLKTVSRVINNEPSVMQATRARVLRAIAELDYEPDPSARNLRSGTTFVIGLVYDNPNPYHIIGVQNGVLSACRETGFGLQIHPCDSSSPLLADELADWVQRSRLAGLVLTAPMSERRDLIQALTARGIKLVRIIAATEDPADGACVFVDDREAAYEITEHLIQLGHQRIGFLWGGSSHRSSGERYAGYEAALKDYGMTVDKHLVVQGDYTFDDGFRGARRLLALREPPTAIFGSNDEIAAGVLAAAKSAGMNVPYDLSIAGFEDSPFSRQSWPPLTTAKQATEDIARHAARLLIAQLRSDAYDDAPAPLHNQGFVPQLVVRGSTAPMRPAGARPLPSDPA
>NZ_CP044092.1|WP_099498206.1|572677_573967_-|sugar-MFS-transporter
MSAVSAASVRPNVATSIAIVGVLFFLIGFFTWLNGPLITFVKLAFELSEVGAFLVLMVFYLSYFFLALPSSWILRRTGMKKGLSLSLLVMAGGAALFGEFATQRWYPGALSGLFVIGSGLALLQTAINPYISILGPIETAARRIALMGICNKIAGMLAPVLIGTVVLHGIGDLSATVAAADEATKAQLLNEFAAKIHAPYLAMAGLLVLLAVAVLFSPLPEIKSSEANATPVAAGAAERRSIFQFPHLWLGVLCLFVYVGVEVMAGDAIGTYGHGFDLPLDQTKMFTSLTLGAMLVGYVVGLLLIPKVVSQSRYLTISAVLGVVFCLGAWATHGYVSVAFVALLGFANAMMWPAIFPLAIRGLGRFTETGSALLVMGIAGGAIIPQLFAVLKQHIDFQLTFVLLMVPCYLYILFYSVIGHRAGLPQDKA
>NZ_CP044092.1|WP_024957032.1|574345_575365_+|ROK-family-protein
MTASHPAPAHVLSRIAPSFLAADVGGTHVRVARVQASGDAAHPVQVLEYRKYRNADHAGLSAILSDFLGEGPRPTHCVVASAGYAREDGTVITANLPWPLSARQVEADVGLQRVFIVNDFEAVAYAAAQVDASGVLHLCGPETAARGPTLVVGPGTGLGAALWIPTAHGPVVLPTEAGQPTLAASTELEMAIVRHMQRDRAHVSIEHAISGPGLMNLYRAVCALQGQAPTLASPDAVTAAAMADSDAHARQALDVFCGLLGSTIGDMALFYGAHGGVYLAGGILPQIREYLHASTFVERYLQKGPMGEALARIPVKVVEHGQLGVVGAASWYLQQQSAA
>NZ_CP044092.1|WP_005414491.1|575508_578217_+|TonB-dependent-receptor
MNTRKTLLSAAIVSCIAFSAHAQQAAQTATDLDTVQVTGIRGSMEKSLDTKREANARVEVVTAEDVGKLPAHNVADTLQRLPGVNISSSSADEGGFDEADRVSLRGTSPSLTQTLINGHTVGTADWFVLSQGNNVGRSVSYSLLPSELVRSVEVNKSSQAKLQDGGTTGTVNILTRKPLEFSKQLTAEGSIGMVRSDQAKSNDPQLSALFNYKNDEGNFGVMVQAFSQKRELRREAQEIPGGFFQIDPNGTVAKSNPDLAGVYAPGLLGSTLFEQTRERKGGLVSLQFKPMDNLTLGLEGFSSELKANNYNRNFMLWGGRILNDRTVEDANGNKILIPGQAPNPGYVIKDGVLSNATFAGQADRDYAVYDMIYRESKAKTNYITFDADWQISDNLGMKFQAGSTKGTGETPRQYIAEVNLARGGGATWATHGNGSPIDWNVGGNIGPSGVTDFGTWGNQQVTAIDKEKWATLDFNQYFADAGVLNSIDFGARFGDHKREAKSPEGATPGAIWNALKNGATANFPGGFANGIGGSFPRDLWYFTPGALKEAVTNNSTWLSGNDGPTGRHNYGAEWTVSEKNFAAYVQGNFSGDRWSGNVGLRYVNIKQDIDTYAAATGSTVPDVSSLFGAWTREAFENKHNRVLPSANFKYDLRDDLVLRVAASQTQTLPDFSALGASSYGSDLNRTGGGGNPKLKPVVSTNFDANLEWYFMPRGMLSIGAYSMRLKDYVAFSTEKEMLFSELTNRLEEYNISRPRNADGKVRGIEVAYEQPIGEYFGVNANYTYADGSTDHTWADGSDNLLGTSKNTYNVGAYFENDTFGARVSYTRRSSFLIGLSGANPYYQDDFGTLSASLSYKATDWLSISFDALNLNNPTYKYYQTAAIPTSFYSNGRQYYLNFRFKY
>NZ_CP044092.1|WP_099524302.1|578328_580686_+|family-20-glycosylhydrolase
MVKPSRARMRSAALLGSLLALLPALPALAADPTPATEAPGPLLRAGNLMLIPAPATVQRGQGSGITVRADTVLQAEGEAAQRVASQFADLLARSGGPRLAPARGKAAGTSGSIRFQIVPTFRDSGESYTLESTAQGVLIQAGNETGLFYGATTLAQLATGGSNGVLPAVQIQDAPRFSWRGFMLDSARHFQSLDEIKRVLDAMAAHKLNTFHWHLTDDQGWRMEIKRYPKLTDVGSCRLPAGDGGIDPVTGKEHPYCGFYTQDQIREVIAYAAKLHIQVIPEIDVPGHATAAIAAYPELGTIDTPLKPISEWGVFPNLFNTEDSTVTFLENVLEEVIDLFPAKYVHVGGDEAVKDQWEASKQVQQRMRALGIKDEMAMQSHIIKRLETFLEEHDRRLIGWDEILEGGLPPQATVMSWQGTEGGLAAASAGHDVIMSPVGYLYLDYLQTASPNEPPGRPTQVNLGKLYNFEPVPAELAADKRGHILGLQANMFTEHTRSYARLQHNLFPRLAAVAETGWSTPEHRDFRDFLARLPSQLQRYRAWGLAYAQTPFEVGVDYTDNRADNTVTVSLANPLGYEVRYSTDGQPVSAQSPLYQQPLTGKLPTTVQAAAFYQGQMLAAKPTIATFTAQSLLSRRSDELLSCVGKKGLVLRLEDDGPREGNRAVFNVDIFQPCWRWPQAQLDGIGSLEVRAGRIPYYFQLAHDEPKRRFEKAKRPHGEMLVRRGDCSGKVLAEVPLPAKPDADGFVTLRAALPKGTQGSGDLCINFTGDTRPAMWVLDEVTLGK
>NZ_CP044092.1|WP_049402429.1|580791_581184_-|membrane-protein
MSEVLPAIKPLRRPRLWAGLWAAAVLLVIVVCLIPPPPIPLPENSDKGEHFLAYFILAGSAVQLFRRGRPLLWVGVGLVLMGIGIEFAQGALTSNRMADPMDAIANTVGVLAGMATALTPLRDLLLRWRG

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Crispr_ID: NZ_CP044092_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_6

600441-600541

Orphan

Consensus_repeat	Method
GCTCGCTGTAAGCGAGGGGCTGAGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044092_6

>merge|NZ_CP044092|6|600441-600541|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGTGAAACGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATGGCTCGCTGTAAGCGAGGGGCTGCGGGT

>NZ_CP044092|6|6|600441-600541|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGT	GAAACGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATG
GCTCGCTGTAAGCGAGGGGCTGCGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_059035448.1\|592490_593726_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_005411066.1\|598064_598775_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP044092.1\|WP_005414510.1\|607748_609824_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP044092.1\|WP_005411078.1\|612942_613881_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP044092.1\|WP_150359285.1\|587634_589452_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NZ_CP044092.1\|WP_005411077.1\|611612_612659_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP044092.1\|WP_100438136.1\|600705_601920_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP044092.1\|WP_024957048.1\|605422_606517_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP044092.1\|WP_005411059.1\|589686_590070_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP044092.1\|WP_150359286.1\|590241_591285_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_CP044092.1\|WP_005411073.1\|606639_607752_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP044092.1\|WP_005411067.1\|598762_599041_-\|YbeD-family-protein	unknown	unknown	gnl\|CDD\|179161
NZ_CP044092.1\|WP_043035517.1\|610309_611491_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP044092.1\|WP_005411064.1\|594579_596757_-\|carboxy-terminal-processing-peptidase	unknown	unknown	gnl\|CDD\|236873
NZ_CP044092.1\|WP_099498215.1\|603285_604431_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP044092.1\|WP_005411075.1\|609827_610313_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_CP044092.1\|WP_024957044.1\|593743_594334_-\|DUF2242-domain-containing-protein	unknown	unknown	gnl\|CDD\|378349
NZ_CP044092.1\|WP_012481290.1\|602020_603289_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP044092.1\|WP_005411065.1\|597036_598047_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP044092.1\|WP_006470430.1\|591574_592480_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_024957048.1\|605422_606517_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.43128e-141
NZ_CP044092.1\|WP_005411066.1\|598064_598775_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	8.74975e-140
NZ_CP044092.1\|WP_005414510.1\|607748_609824_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP044092.1\|WP_005411078.1\|612942_613881_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.16177e-116
NZ_CP044092.1\|WP_150359285.1\|587634_589452_-\|PAS-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	5.0582e-57
NZ_CP044092.1\|WP_005411077.1\|611612_612659_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP044092.1\|WP_100438136.1\|600705_601920_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	6.82586e-149
NZ_CP044092.1\|WP_005411059.1\|589686_590070_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	5.08321e-17
NZ_CP044092.1\|WP_150359286.1\|590241_591285_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	5.26781e-133
NZ_CP044092.1\|WP_005411073.1\|606639_607752_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.19066e-144
NZ_CP044092.1\|WP_005411067.1\|598762_599041_-\|YbeD-family-protein	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	1.56476e-63
NZ_CP044092.1\|WP_043035517.1\|610309_611491_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	3.70259e-87
NZ_CP044092.1\|WP_005411064.1\|594579_596757_-\|carboxy-terminal-processing-peptidase	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_CP044092.1\|WP_099498215.1\|603285_604431_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	7.11981e-138
NZ_CP044092.1\|WP_005411075.1\|609827_610313_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	7.1233e-30
NZ_CP044092.1\|WP_024957044.1\|593743_594334_-\|DUF2242-domain-containing-protein	gnl\|CDD\|378349	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242). This domain is found in various hypothetical bacterial proteins, and has no known function.	6.2609e-62
NZ_CP044092.1\|WP_012481290.1\|602020_603289_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.8282e-51
NZ_CP044092.1\|WP_005411065.1\|597036_598047_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP044092.1\|WP_006470430.1\|591574_592480_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0

>NZ_CP044092.1|WP_005411067.1|598762_599041_-|YbeD-family-protein
MEIKSDNPDHGFQFPGQFELSAMGPANRGLEHELPRLLLAAGIDVVNERISWKHSSNGKYVSVRIVFKAESREQYDLAHQALRDHPEVKWTL
>NZ_CP044092.1|WP_005411066.1|598064_598775_-|lipoyl(octanoyl)-transferase-LipB
MDAVADSCPAEAAPEDRAPRPALVRDLGRQAYEPVWRAMQRFTDQRSDTDADELWVVEHDPVFTLGQAGKDEHVLAPGDIPVLHVDRGGQVTYHGPGQIVVYPLLRLPRLGIGVRDYVCRIEQAIIDTLGEWNIGAERREGAPGVYVGGAKIAALGIRVRRGCTFHGLAFNVAMDLEPFHRINPCGYQGLQVTSVVDLGGPSGMEAVKPVLLDHLARQFGLLLQHTPELPDLSAAA
>NZ_CP044092.1|WP_005411065.1|597036_598047_-|lipoyl-synthase
MTETTARSIPLQIVQGDSPSAAPLQAGVKQLGGDKINRSPVQFADAPVLRKPSWIRVRIPSGNAVQNLKAKLRENRLVTVCEEASCPNIHECFGHGTATFMILGEVCTRRCSFCDVAHGRPKPPDANEPASLGQTVADMGLKYVVVTSVDRDDLRDGGAQHFVDCITAIREKSPGTRIEVLTPDFRGKGRMERALEILAQNPPDVFNHNIETVPDLYRNVRPGADYQWSLNLLKNFKAQHPDVPTKSGIMLGLGEDFEQIKATLRDLRAHDVDMITIGQYLQPTAHHHPVLKYWTPEDYKALEDYGYELGFSHVASGPMVRSSYHADVQAKGAGVS
>NZ_CP044092.1|WP_005411064.1|594579_596757_-|carboxy-terminal-processing-peptidase
MKFKAPAFLMALALVAPLALAAKADSPALPAAATADQVTTSKLVYGLLSDSRYAYRPRALDEATSKDVFKRYLETLDGGKQYFTQADVARFAPFEANIASAIRGGELEPAFQVFAVYKQRVGERVAYARKLLKQEPDFTTDERFEYDRKKVPWAASSAELDELWRKSVKNDWLRLKLAGKKPDDIRKTLDKRYATLEKSVNELKGEDVFQFFMNSYTSAVDPHTDYFTPRTAENFNQAMSLSLEGIGAQLQRQDDVVVIREIIAGGPAAVDGTLKPGDRIVGVGQGKSGLVEDVIGWRIDDVVAKIRGAKDTQVKLEFIPAAEGADGKHHTLVLTRQKVRLAEQAAKGETMTIPAANGEPARRIGVIKLPTFYQDFEGRRRNAADYASATRDVAKLLAGFKNDKLDGVVLDLRNNGGGSLDEAIELTGLFIEQGPVVQVRESGGRVTVNSDRNQGVAWDGPLAVLINRGSASASEIFAGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPSGETQRFGQVKLTIAQFFRISGSSTQHKGVVPDLAFPASVDATEFGESTYDNALPWTRIAAVPHTQYGNFAPLLPKLETRHDARIATDKEFQWWNEDVQQFRTEAAKKYISLNEATRRAERERQDTQRKERQVQRKELGLALDPLADDSSDDGLTGNERDIVKDAAREKAAEKRPDPLLRESASILADAVNLLANDRPLSAQVLPQSTGAGRWAD
>NZ_CP044092.1|WP_024957044.1|593743_594334_-|DUF2242-domain-containing-protein
MRASRLSSVAVALASALILSACGGRAADSTLLRESFDSGDTFSRTVDGRPGDACEAARRTLLSQGYAIARSDAAQVEGNKNFQPREDDHEQLVLRISCAPRGSQTLVFVSAVQDRYALKKSPTSASVGVGALGSVSLPFGSNDDSLVKVASSTVTDAEFYRRFFQRLQQYLPAEAGKPVPPVVTTPEPAPASTDQD
>NZ_CP044092.1|WP_059035448.1|592490_593726_-|hypothetical-protein
MGVALLLPALGAAATPLDCTQGLLQRLGWHFETRAIGAPQVHGGPVCTRASLPEAQAAGDLRVQWPADMPAAARKALLQQVLDDPATVCAYAFQLGAATQRAAAALQGNAGFRFSGLQLGWIGFGLHGAHAQGWQRTRSFGRGFVPITGNSQALQAFYSGNVRAECGVGRQVAQLATQRELYGDAAFDAGFSAEELSIGTFLALHDTDSILLGAHAGDYFADGKAVRTSAMGRQAFVGVPGFIEHVYDKGMLDDLSNQAENFVVVSVGEEAAQALAAHGGLAWYDQRNAELWALAQDIPRIGRRYFERLLFERDPDLRARLEPRYHATLARMDRLLDDPFYQQFVIYVHPRGIRPIGYHIARLLDRNPRTPFSIDLAVHNLHTTLYRRWREAQLRHCAATGRPGSLTLDPN
>NZ_CP044092.1|WP_006470430.1|591574_592480_-|decarboxylating-6-phosphogluconate-dehydrogenase
MDIAMIGLGRMGANMAQRLHRGGHRVVGYDPGEGARQRAAEAGLEVVDSLAAAVAALPVPRVVWLMVPAGETVDQTLGQLTPHLAEGDIVIDGGNSNYQDSIRRAKALAEDDLGYVDCGTSGGVWGLQEGYSLMVGGEASVVEQIAPLLRTLAPAEDRGWARVGPSGAGHFTKMVHNGIEYGMMQAYAEGFALMERKQEMELDLAQVAEVWRHGSVVRSWLLDLSTEALKRNPSLDGIAPYVEDSGEGRWTVAEAIALDVPAPVITLSLLERLRSRESNSFTDRLLSAMRNEFGGHAIKKS
>NZ_CP044092.1|WP_150359286.1|590241_591285_+|oxidoreductase
MRPELQLALIGYGLAGRVFHAPLIQHTPGLVLHSIVSSQRDTLLRAFSDVHVRATPQEVFDDPAVDAVVIATPNEQHAPLAIAALAAGKHVLVDKPFALDVAEAEAVLAAARDAGRIATVFQNRRFDADFLTLQALLADGTLGDIAECHVHFDRYRPQVRDRWREQDGPGSGLWYDLGPHLLDQMLVLFGWPEAIDADLAVQRDGGSAIDYFHAVLHYPRHRAIVHSGSLVAAPTPHFSVHGSKASWIKHGLDVQEAQLRRGVAPGAPGWGIDPRHGELVRCDAEDNVQRSTVDNLPGDYRRLYAQFAAAMHGDGEATVDPVQALQLMRLLQAGMDSAREGRRIALG
>NZ_CP044092.1|WP_005411059.1|589686_590070_-|BON-domain-containing-protein
MSNTTRTLIASALTLGLALSSSAAFAKDPAAKSPPTSAHPATHADRHDSNEPVTDTWITTKVKADLLASSNVPGTEIKVETVNGVVSLSGAVASQAEKDKAVTTAKGIKGVTRVDAAALKVSAAAKR
>NZ_CP044092.1|WP_150359285.1|587634_589452_-|PAS-domain-containing-protein
MALVFSDDIWDRWRLPALALAAAAIIVVPWLTMRKLQQDNEQAMAWVNHTQAVGVALQQLQADVRDVESAALTLSKGVDAPGLRERMAAANDIPGRLAELGRMTRDNPDQLIRIGRIESMLEGRMALARELARSEPNSDQRELVKDLSTRYPIRGLVEELQASEQQLLTLRAEQAARQRKQTELVSWSSLVIQLGLLGLVLWLLQRQIGRRLHAERQSLRSAARAASVLQTVREPIVLLDRDLRVQLHNPAFAELYGLQDERADGLLLEGVGDGAWKDAVVRQRLSDVLLRGRELWDFEHEQRTADGMARYMLLNARRMPLPDTDDEVVLLTVSDVTMQRAVQLRVEELNRQLEGKVAQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLSRHLGDAADDKSRHYLDVISSSARRMAALIDDLLVYSRLGRAAMRQQAVDMQSLVADTRAMLDSNLQAEAENSGHVHQVEWSIAPLPIVVGDENMIRQVWLNLLGNAVKYSGNREPAKIRVDYQPQPDGGHQFTVSDNGAGFDMAYAGKLFGVFQRLHKASDYPGTGIGLASVRRVLTRHGGRIWAEAEPDVGATFHFYLPPAIDADKQGPSA
>NZ_CP044092.1|WP_100438136.1|600705_601920_-|D-alanyl-D-alanine-carboxypeptidase
MNFRSAATALAATLVVGLASAQTPLPTPATPAPAAAAPATVATPPAPAPSVSKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWGFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTLEAPFTAGQQIGTVKVTLDGKVIAEAPLVAVAAVEQAGFFKRLWDSFWMWWESE
>NZ_CP044092.1|WP_012481290.1|602020_603289_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNIRWLVPSLIVFALAACSSAPKKPATAGHGGKSSGTLVQGRGSRPAHCPEGSPYAAAKEDLSTRGNYTAGGLYKPGVRDSTPDYIPNVACIPEPEVTAEERSAIGNKSPYVVLGKSYKVLDDTHDYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALQPGESNLMAQKPSRRERRAAEAAATTAVASARPVPAPRASTDSDIDRLVNRLPTDGAPARGQPATTRGVASTAPDVAVSSLPPSAPVVRTSAPAPAVVASTAPRAVAPAPVRAAAAAPSLSQQMVGAVMVQVASFSNRDNANRAMGQLSAAGIVGATISDIAAGGRTLFRLRVPASDHASAAELVGRIAGLGLGSPQIVKD
>NZ_CP044092.1|WP_099498215.1|603285_604431_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPKSPPSSPQASSTPRQPATRAHGPAEAAPEATAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAEHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREEKLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGQVAVPATLAPGREEFNPTEWMPTWSLADLAQRGYQPSTPVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_CP044092.1|WP_024957048.1|605422_606517_-|rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSLLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTTTVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_CP044092.1|WP_005411073.1|606639_607752_-|rod-shape-determining-protein-RodA
MKVFLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_CP044092.1|WP_005414510.1|607748_609824_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTATPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHPVQVGAPTPEPAPAPQPGTPAAAAVPATPRPTVAEPAR
>NZ_CP044092.1|WP_005411075.1|609827_610313_-|rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPYWLALVLAYWVIETPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_CP044092.1|WP_043035517.1|610309_611491_-|rod-shape-determining-protein-MreC
MPPYAGPPVASRSGDAASPLRLLAYLALAITLIVLDDQAGWLARLREQANSLVQPVWALAGLPGKLGNQVKDSAASHTQLVTENRELRNQLLLANARLTRLQTAALDNAQLRELLNVAERSGLDVQLAPILDIDLDPVKQRLVLDAGSREGVHVGQAVIDAGGLMGQVISVTGGTSTVLLLTDPDHAVPVTVARNGVRLIVYGRGDTLELRDIPLSAGVEVGDEIVTSGLGGRFPAGFPVGTITGLRPDDTHAFLVGELKPAAQLDRGRDVLLLRPGAAIRIPPELRLQLEEATPGGPATGATVPAGAAPATTTPAPVSSPVVPAAGRQQPSSQARTVAPASSLDPAAPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQPTTPEAQR
>NZ_CP044092.1|WP_005411077.1|611612_612659_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVQELEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_CP044092.1|WP_005411078.1|612942_613881_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFEGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELRAFIDQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA

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Crispr_ID: NZ_CP044092_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_7

1800726-1800827

Orphan

Consensus_repeat	Method
GGTAGGTGCCGACCGTTGGTCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044092_7

>merge|NZ_CP044092|7|1800726-1800827|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCAGACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCTGGTGGGTGCCGACCGTTGGTCGGCA

>NZ_CP044092|7|7|1800726-1800827|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCA	GACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCT
GGTGGGTGCCGACCGTTGGTCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_043033919.1\|1800039_1800723_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP044092.1\|WP_005407925.1\|1797860_1798124_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_005407919.1\|1791578_1792058_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
NZ_CP044092.1\|WP_005407937.1\|1808559_1810401_-\|TonB-dependent-vitamin-B12-receptor	unknown	unknown	gnl\|CDD\|273802
NZ_CP044092.1\|WP_150359439.1\|1802751_1803846_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP044092.1\|WP_150359442.1\|1807802_1808459_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_CP044092.1\|WP_111202554.1\|1806947_1807739_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP044092.1\|WP_005407938.1\|1810882_1811461_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP044092.1\|WP_150359438.1\|1797487_1797778_+\|DUF3247-family-protein	unknown	unknown	gnl\|CDD\|371627
NZ_CP044092.1\|WP_005407930.1\|1802045_1802561_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|179953
NZ_CP044092.1\|WP_005412127.1\|1792207_1793512_+\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_CP044092.1\|WP_005412128.1\|1793490_1794558_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP044092.1\|WP_150359441.1\|1806021_1806951_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP044092.1\|WP_005407927.1\|1799341_1800043_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP044092.1\|WP_088428693.1\|1800837_1802046_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NZ_CP044092.1\|WP_012479034.1\|1805274_1805913_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|225462
NZ_CP044092.1\|WP_005407923.1\|1795455_1797444_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236842
NZ_CP044092.1\|WP_032966404.1\|1794647_1795211_-\|DUF3016-domain-containing-protein	unknown	unknown	gnl\|CDD\|378666
NZ_CP044092.1\|WP_024957099.1\|1798280_1799345_+\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP044092.1\|WP_150359440.1\|1804224_1805136_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293825

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_043033919.1\|1800039_1800723_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	8.38787e-59
NZ_CP044092.1\|WP_005407919.1\|1791578_1792058_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	2.38136e-70
NZ_CP044092.1\|WP_005407937.1\|1808559_1810401_-\|TonB-dependent-vitamin-B12-receptor	gnl\|CDD\|273802	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor. This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins].	0
NZ_CP044092.1\|WP_150359439.1\|1802751_1803846_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP044092.1\|WP_150359442.1\|1807802_1808459_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.0118e-85
NZ_CP044092.1\|WP_111202554.1\|1806947_1807739_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	6.5611e-17
NZ_CP044092.1\|WP_005407938.1\|1810882_1811461_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	8.42842e-35
NZ_CP044092.1\|WP_150359438.1\|1797487_1797778_+\|DUF3247-family-protein	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	6.1322e-23
NZ_CP044092.1\|WP_005407930.1\|1802045_1802561_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	3.90362e-120
NZ_CP044092.1\|WP_005412127.1\|1792207_1793512_+\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_CP044092.1\|WP_005412128.1\|1793490_1794558_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP044092.1\|WP_150359441.1\|1806021_1806951_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.13467e-85
NZ_CP044092.1\|WP_005407927.1\|1799341_1800043_+\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	4.64966e-75
NZ_CP044092.1\|WP_088428693.1\|1800837_1802046_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NZ_CP044092.1\|WP_012479034.1\|1805274_1805913_-\|NAD(P)H-binding-protein	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	1.07738e-67
NZ_CP044092.1\|WP_005407923.1\|1795455_1797444_+\|PAS-domain-S-box-protein	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	3.87629e-63
NZ_CP044092.1\|WP_032966404.1\|1794647_1795211_-\|DUF3016-domain-containing-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	1.4195e-64
NZ_CP044092.1\|WP_024957099.1\|1798280_1799345_+\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.16743e-67
NZ_CP044092.1\|WP_150359440.1\|1804224_1805136_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293825	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	2.2359e-98

>NZ_CP044092.1|WP_043033919.1|1800039_1800723_+|HAD-family-phosphatase
MTTIAALPFLPDAVIFDMDGLMIDSERVSLACWSQAADEFGLGLDEAVFLRMVGLGDRDTHALLRAQGIEDSVIEAVAARCHDLYEARTQTGLPLRPGILELLQLLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPR
>NZ_CP044092.1|WP_005407927.1|1799341_1800043_+|pseudouridine-synthase
MKLVKLIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVPHEAIRVDGEPLDPPVGLSIALHKPAGYTCSTKDTGRLIYDLLPPRFRDRDPVLSTVGRLDRETSGLLLLTDDGGLLHRIISPKSKLPKVYEVELSDDLRGDEVALFASGTLMLESEKTPLLPAELEVLDARRARLVLHEGRYHQVRRMFAATGNHVQALHRSRVGGLDLQGLDEGQWRQLTSTDLDTLFAP
>NZ_CP044092.1|WP_024957099.1|1798280_1799345_+|methyltransferase
MASSDDAPLQTLFLPFSQGALRWPEGPVAFLRARDGWPLREVAGNREVHCEQSFAPFAQPLQQAAGWTVSGQLDDVAGKGRYPLVLVLPPRQREEARALFARALALVADGGRIVACQSNNEGARSGEGDLKQLTGLGGSLTKNHCRVYWTAPMQGQHDADLAKRWLALDAVRPIVGGRFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEQRALALAELNLAPPPRPLPLRFRWQDVTAGIEPGYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEYTLNESFGAVRVIAERDGFKLVEAVKGKGK
>NZ_CP044092.1|WP_005407925.1|1797860_1798124_-|hypothetical-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVARVAEERAYARRFEATPTLFEH
>NZ_CP044092.1|WP_150359438.1|1797487_1797778_+|DUF3247-family-protein
MSRIAPRIHTDPAQIARLEDLLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPRV
>NZ_CP044092.1|WP_005407923.1|1795455_1797444_+|PAS-domain-S-box-protein
MMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPNHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLRTLLGEAIGAQELVAEGKALDVHLQLPEQPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVQLQADGTHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVAAASEGHGHGATFTVRLPQHLPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADTGHLQYHVMLTDIGMPGMDGYGLVRTLREDMGVDAATLPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVAAVRKVQVPRADSALH
>NZ_CP044092.1|WP_032966404.1|1794647_1795211_-|DUF3016-domain-containing-protein
MKRALVIALLAGALVVSGANAAARNVTGTDAPRALQANGPVSVKWEDPATFTEIRQSTNRFEAERGDWVQQLARYLQTTAAKPLQPGQTLDVTLVDIKRAGDYEPWRGPRARDIRVMRDIYPPRITLQYTLKDADGRIVSEGDARLSDSGYLQGSGLLTNSDPLRYEKRLIDDWVKRQLASQATAAR
>NZ_CP044092.1|WP_005412128.1|1793490_1794558_+|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAIIKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQAGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSPWQLEAVAAFDSPRPLTVWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERIVLMTHLARADELDSERTHEQAATFARAIDGLHGETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDDTTLTERLRPVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGALIGRVSMDMLTVDLTAHPQAAVGSVVELWGSAPTLAELAPRCGVSAYQLPCAVKRVAKVYV
>NZ_CP044092.1|WP_005412127.1|1792207_1793512_+|D-amino-acid-dehydrogenase
MRVLVLGSGVIGTTSAWYLRQAGFEVTVIDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQIGIEFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMCVDAGVEFRFDQDITGLEFDGDRITGVRIDGKLETADRFVVALGSYSPALVAPLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDDRIRVGGMAEVAGFDLSLSQRRRETLELVVSDLYPKGGDLSRAQFWTGLRPATPDGTPVIGATPFRNLYLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYGHAPQQENRTCVLPAR
>NZ_CP044092.1|WP_005407919.1|1791578_1792058_-|winged-helix-turn-helix-transcriptional-regulator
MATRTRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREGVITGYHAHLDPAAVKASLLVFVEISLAYKSGDIFEEFRRAALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETLSLPIPD
>NZ_CP044092.1|WP_088428693.1|1800837_1802046_-|beta-ketoacyl-ACP-synthase-I
MRRVVITGMGITSCLGNDLDTVSAALREGRSGITALADHAEAGLRSQVGGRVDLDLEALIDRKQKRFMSDAAAFAYLAMRDAIADAGLSAEQVSSLRTGLIAGSGGGSSEWQIGAVDLLRERGVRKVGPYMVPRTMCSTVSACLATAYQIKGVSYSLSAACATSAHCIGAAADMIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNETPASASRPYDKDRDGFVIAGGGGMLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQGVDRPLDYLNTHGTSTPLGDVTELNAIREVFGDAVPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPKVESFPILRESREQQLDTVMSNSFGFGGTNAALVFGRV
>NZ_CP044092.1|WP_005407930.1|1802045_1802561_-|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MTRLHAFNREQLLASARGELFGTAAGRLPNDPMLMFDRITDIREDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPEAKLVRYEIDISRVINRKLVMAQSDARMYVDDREIYSARDLRVGLFTETGSF
>NZ_CP044092.1|WP_150359439.1|1802751_1803846_+|DNA-polymerase-IV
MTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRAERLCPDAIFVPPDFSRYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPKSGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVMEGKLAARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFAEDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALSLRARVDLPAETRYRLVGVGLGGFREKEPVVQGELFEHDMINPTDT
>NZ_CP044092.1|WP_150359440.1|1804224_1805136_-|MBL-fold-metallo-hydrolase
MRTAALLLPLALAASFTSAPLLAAPATAAPAAATKSQLHLQTFHPGPQAMFSVSSVLIEGRRDAILVNAQFGASDARKLVELIRASGKQLTTIYISHGDPDYYFGLATLQDAFPQARIVATAQTVAHIQQTQAGKLAYWGPKMGADVPSRIVVPQVLDGDALQLEGQRLPLIGLDGPTPDRTVLWVPSLRAIVGGIPVVAGEHVWMADTQTPKSHADWLQTLQRLQALKPKVVVPGHYAPGAALDASALVFTADYIRAFDAETAKAKDSAALVKAMQARYPKLAGVASLKLSAKVAKGEMQWP
>NZ_CP044092.1|WP_012479034.1|1805274_1805913_-|NAD(P)H-binding-protein
MKIALVGSTGNIGRQIARHALANGHELTVIVRSAQDLPAELAGAHPVIASLDDQDALVAAIAGHDVLASAYGPRPGDDIGRVGEVAAQLAAAARKAGVPRLVVVGGAGSLEVAPGVQLVDTPNFPEAYKPYALAHREAFNRLQAVDDLDWTFFSPAAEIGPGEERGQYRVQPKAFLADASGHSRISYADYGAAFVAELEAQQYPKQIITAAY
>NZ_CP044092.1|WP_150359441.1|1806021_1806951_+|LysR-family-transcriptional-regulator
MDRLTAMTVFVEVAERGSLTAAAEVLDMSRAMVTRYLAEVEAWLGARLLHRTTRRVSLTGPGEAALVRFRQMLAIGEELHGELASDDPEPHGTLRVTASVSFGQSHLARAVAAFVARHPAARIELLLVDRMVNLVEERVDLAVRIARQIDPSLIARRLATCRSVLCATPSYLQARGTPTAPEHLAAHNCLTHHYVGKSLWQLHRDGRSLSVAVGGNISANEASLLLEAVRAGAGIAMLPTYQVAPLLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFLAECFASPAFQDLDWRPPGKENT
>NZ_CP044092.1|WP_111202554.1|1806947_1807739_+|class-I-SAM-dependent-methyltransferase
MNHGQALIDHNRAAWDRQASEVREWSRPVESSTIAAARDGRWQVHLTPRALPLDWLGDVRGRRILCLASGGGQQAPVLAAAGAEVTVFDLSDGQLEQDRRVAARDGLQLRTVQGDMRDLHAFANDSFDVVFHPISNLYVPDVRPVWTECRRVLARDGMLMASFYNPVLFVGARDPQLDAQGLIRPQYAIPYSDLEDLPPAEREAKLARGDALTFGHSLTELIGGQLDAGFVIDRFMEDWQPQPRFLIDRYLPTFLATRARRIG
>NZ_CP044092.1|WP_150359442.1|1807802_1808459_+|phosphoglycolate-phosphatase
MSYPYPLVVFDLDGTLVDSAADIAEALNRTLEDIGMARVPEATVLGWIGDGVRRLVEQAVQAAGREVDLAEVMPVFMVHYRECLLRSPRLFDGVGEALAQLRARNVPLAICTNKPEALVPPLLQHLGIGDAFALVLGGDSLPQRKPSGEPLRHIAAHFGLPVESCLMVGDSLTDYRAAEEAGMPIALVRYGYPRGLDLATAHAVAVIDDLRELPGLRG
>NZ_CP044092.1|WP_005407937.1|1808559_1810401_-|TonB-dependent-vitamin-B12-receptor
MKLQSRMLSLAVLAALPALAQAANDTTALDQILVTATRTPIALQDSIAPAQVIDRAQIESSQATSLQELLRGRAGINLANAGGLGKQSSLFLRGTNSGHTVVLVDGVRINSADLGLAMYQDLPLAQIERVEIVRGPQSSLYGADAIGGVIQIFTRRNQGDFAPHFQLGGGSNGLREASGGIGGGTERGWFGADIAYQHSDGIDACRGSATLFAGCFADEPDRDGYRNLSKSLRGGYTFNDQWNVEGSALRADGRNHYDGYYNYSETRQQVLAGKVRYTPSERLAFTANVGRSDNESDNFGDFGARGSAQTHRDSASLQGDFGVAEGQLLSAGVDWSEDNLDGSSAGYLVDSRRNTGVFVQYQGRFGRHQLQASARNDDNQQFGNHATGSVGWAMELGHGLRLNASYGTAFKAPTFSDLYDPWSGVPTLKPEKSKSANLGVSQQGQGWHWGLDVYETRIDDLITYDAATFKMQQVEKARIRGAELTGGVLLAGFDINAQLSYTDPRNRTGGSTQFDNWLPRRAQQTARLDIDRRFGDFRAGLTVQGAGKRYDDAANTVKVGGYGTLDLRAEYALTPSWSLLARAANVFDRRYETVAWFNQPGREYQLSVRYQPK
>NZ_CP044092.1|WP_005407938.1|1810882_1811461_+|histidine-phosphatase-family-protein
MILDLVRHAGNGRDEFLDGRSDPPQLAGLPQELVEAYAGQRWERVISSPRLRALHTAMALATPRGLDVEADEEWEELDFGDWDGRSLFDLPEDALAAFHADPHAFPPPNGESWGHFERRIARALDRLLDDDDPVPTLVVSHGGPLRMVLSQVCGLPMSLCWALRIDHGTRLRVWLERGEIGLVGELLELQQP

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Crispr_ID: NZ_CP044092_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_8

1840807-1841021

Orphan

Consensus_repeat	Method
CGACGCCAAGCTCGCCCGCCAGGAAGCCGAGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP044092_8

>merge|NZ_CP044092|8|1840807-1841021|PILER-CR
CGACGCCGCGCGTGCCCGCCAGGAAGCCGAACAGCTGCGCATGCAGGCACAGATGCAGGCCGAGGAGGCTGAACGCCTGCGCCAGGCCGCCGAGGCCGAGACCCTGGCCCGCCAGGACGCCGAGAACGCCCTGACCAGCGTCGCCGGCAAGCAGCAGCAGCGCCTCAGCGCCGCCCAGCAGAACGCCGCCAAGCTCGCCCGCGAGGAAGCCGAGC

>NZ_CP044092|8|1|1840807-1841021|PILER-CR
CGACGCCGCGCGTGCCCGCCAGGAAGCCGAAC	AGCTGCGCATGCAGGCACAGATGCAGGCCGAGGAGGCTGAACGCCTGCGCCAGGCCGCCGAGGCCGAGACC
CTGGCCCGCCAGGACGCCGAGAACGCCCTGAC	CAGCGTCGCCGGCAAGCAGCAGCAGCGCCTCAGCGCCGCCCAGCAGAACGCCGCCAAG
CTCGCCCGCGAGGAAGCCGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_150359448.1\|1845694_1846978_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP044092.1\|WP_012479051.1\|1837443_1838727_-\|putative-DNA-modification/repair-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188431
NZ_CP044092.1\|WP_005407964.1\|1841677_1841914_+\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|377305
NZ_CP044092.1\|WP_005412152.1\|1826086_1828726_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
NZ_CP044092.1\|WP_111111833.1\|1853912_1855031_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NZ_CP044092.1\|WP_111111839.1\|1843708_1844881_+\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|366438
NZ_CP044092.1\|WP_150359452.1\|1852582_1853893_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340825
NZ_CP044092.1\|WP_150359451.1\|1851038_1852583_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_005407965.1\|1842214_1843585_+\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223110
NZ_CP044092.1\|WP_150359447.1\|1836002_1837463_-\|UdgX-family-uracil-DNA-binding-protein	unknown	unknown	gnl\|CDD\|274850
NZ_CP044092.1\|WP_005407961.1\|1840106_1840472_+\|DUF4398-domain-containing-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_005407953.1\|1825531_1825894_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|376501
NZ_CP044092.1\|WP_150359445.1\|1834286_1835276_+\|FAA-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP044092.1\|WP_111111838.1\|1844880_1845705_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP044092.1\|WP_150359446.1\|1835290_1835959_+\|maleylacetoacetate-isomerase	unknown	unknown	gnl\|CDD\|273527
NZ_CP044092.1\|WP_150359450.1\|1850266_1850695_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_004141526.1\|1838857_1839985_-\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|227341
NZ_CP044092.1\|WP_005412154.1\|1831936_1833349_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NZ_CP044092.1\|WP_150359444.1\|1828800_1831395_+\|peptidase-M14	unknown	unknown	gnl\|CDD\|349457
NZ_CP044092.1\|WP_150359449.1\|1846998_1850004_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340856

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_012479051.1\|1837443_1838727_-\|putative-DNA-modification/repair-radical-SAM-protein	gnl\|CDD\|188431	TIGR03916, hypothetical_protein, putative DNA modification/repair radical SAM protein. This uncharacterized protein of about 400 amino acids in length contains a radical SAM protein in the N-terminal half. Members are present in about twenty percent of prokaryotic genomes, always paired with a member of the conserved hypothetical protein TIGR03915. Roughly forty percent of the members of that family exist as fusions with a uracil-DNA glycosylase-like region, TIGR03914. In DNA, uracil results from deamidation of cytosine, forming U/G mismatches that lead to mutation, and so uracil-DNA glycosylase is a DNA repair enzyme. This indirect connection, and the recurring role or radical SAM protein in modification chemistries, suggest that this protein may act in DNA modification, repair, or both. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP044092.1\|WP_005407965.1\|1842214_1843585_+\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	1.19921e-132
NZ_CP044092.1\|WP_005412152.1\|1826086_1828726_+\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	3.60848e-37
NZ_CP044092.1\|WP_111111833.1\|1853912_1855031_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
NZ_CP044092.1\|WP_111111839.1\|1843708_1844881_+\|cystathionine-gamma-synthase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	0
NZ_CP044092.1\|WP_150359452.1\|1852582_1853893_+\|glycosyltransferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	3.13286e-21
NZ_CP044092.1\|WP_005407964.1\|1841677_1841914_+\|YdcH-family-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	6.81491e-09
NZ_CP044092.1\|WP_150359447.1\|1836002_1837463_-\|UdgX-family-uracil-DNA-binding-protein	gnl\|CDD\|274850	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain. This model represents a clade within the uracil-DNA glycosylase superfamily. Among characterized proteins, it most closely resembles the Thermus thermophilus uracil-DNA glycosylase TTUDGA, which acts uracil (deamidated cytosine) in both single-stranded DNA and U/G pairs of double-stranded DNA. This domain may occur either as a stand-alone protein or as the C-terminal domain of a fusion with another domain that always pairs with a particular radical-SAM family protein.	7.25556e-99
NZ_CP044092.1\|WP_150359448.1\|1845694_1846978_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	1.51664e-113
NZ_CP044092.1\|WP_005407953.1\|1825531_1825894_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	1.86481e-49
NZ_CP044092.1\|WP_150359445.1\|1834286_1835276_+\|FAA-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.22478e-36
NZ_CP044092.1\|WP_111111838.1\|1844880_1845705_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	5.771e-49
NZ_CP044092.1\|WP_150359446.1\|1835290_1835959_+\|maleylacetoacetate-isomerase	gnl\|CDD\|273527	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines].	6.71536e-111
NZ_CP044092.1\|WP_004141526.1\|1838857_1839985_-\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|227341	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].	2.5955e-166
NZ_CP044092.1\|WP_005412154.1\|1831936_1833349_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	2.13664e-173
NZ_CP044092.1\|WP_150359444.1\|1828800_1831395_+\|peptidase-M14	gnl\|CDD\|349457	cd06238, M14-like, Peptidase M14-like domain; uncharacterized subgroup. Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavage. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	4.28411e-97
NZ_CP044092.1\|WP_150359449.1\|1846998_1850004_+\|glycosyltransferase	gnl\|CDD\|340856	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins. Members of this family may function in teichuronic acid biosynthesis/cell wall biogenesis. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	5.67008e-66

>NZ_CP044092.1|WP_005407961.1|1840106_1840472_+|DUF4398-domain-containing-protein
MRHSLYVMAFAFALSAPAWAQDGAMELAQARQAVDKATQADADQYAPDLIGLARQGLEQAQRAAGDRRERKNAPAMALRAAADADLARVRSEEATVTAQLQLRRNEVNQLQRQLSTGEDRR
>NZ_CP044092.1|WP_004141526.1|1838857_1839985_-|PilT/PilU-family-type-4a-pilus-ATPase
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALPDAGRFRVNVFKQRGEVGMVIRAIRSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIEDPIEYLHKHKMSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERILNFFPESAHKNVLMNLALNLRAVISQRLVKNKEGRRLPATEVLLNTPMIRDLLRRGQVHEIKAAMEASLEEGMESFDQCLFRLAKAGTIEQEEALRAADSRDGLALKFRLSEGSSGEHDPYADFSAGAPSITHGF
>NZ_CP044092.1|WP_012479051.1|1837443_1838727_-|putative-DNA-modification/repair-radical-SAM-protein
METIRKLAILADAAKYDASCASSGSGKRDSRASGGIGSTEGMGICHSYTPDGRCVSLLKILLTNFCVYDCAYCVNRVSSNVPRARFSVDEVVTLTLDFYKRNYIEGLFLSSGIIRNADYTMEQMVEVARQLREEHRYAGYIHLKTIPEASPELLASAGRYADRLSINVELPTEAGLSALAPEKTVHSIRGAMGELRWRIEEAKEARKAPAAVAPTASRSARPRPPRFAPAGQSTQMIVGADGANDQQILASADSLYGSYRMRRVYYSAFSPIPDASRQLPLQPPPLQREHRLYQADWLLRFYGYGVDEITDTTQGGMLDLDIDPKMAWAIRHPERFPVDLNRAPKEMLLRVPGLGVRNADRVLMARRHGRLRVADIARLKAPMSKLLPFVLLADHHPRKALDDPAALRAQLAPPPRQGSLFDAPPAA
>NZ_CP044092.1|WP_150359447.1|1836002_1837463_-|UdgX-family-uracil-DNA-binding-protein
MHRRQPDAPRWSQRVDPPWSLQAWRDGARDALLRGVRPEQLDWLEGGEASLLDAPPVQQAPVAAQASVPGVPREFLELADTCLCHGEPQRLSLLYRLLWRITHGERAVLTNPADADVLRAMTLAQAVRRDTHKMKAFVRFREVPGQPDAFIAWFEPQHHIVDRVAPFFARRFTGMRWAILTPSRSVAWDGQALTFGPGARREDAPAEDAREALWQTYYASIFNPARLNTRMMMQEMPARYWRHLPEAQLLPRLVRDAGDRVQEMHDRPAQAPQRRIPMRGDAAAARPDTASLQTLRQQANACRQCPLWETATQTVFGQGPADAQVMVIGEQPGDTEDLRGQPFAGPAGQLLDRALAELGIDRATLYLTNAVKHFHHERRGKVRLHKRPESRHIQACRPWLMGEIARVRPQLIVCLGASAAASVFGRDFNLSRDRGRWHTLEEGTRGYATVHPAWVLRQGDGARRERAYALFRDDLAQLLQKGDGGD
>NZ_CP044092.1|WP_150359446.1|1835290_1835959_+|maleylacetoacetate-isomerase
MEIPVDDGIVLYTYWRSSAAYRVRIGLELKGLAWEARPVHLVRDGGEQHLDAYRALNPQQQVPTLLHEGHVLTQSLAILEYLDERFPQVPLLPADAAGRARVRALAQLVACDIHPINNLRVMQYLERSLQLPADARTQWTLHWIAEGFAAMEALLANSRDTGTFCHGDRPGLADLCLLPQLFNAHRFGLDLSPYPTLRRIEAACQALDAFDRARPENQPDAA
>NZ_CP044092.1|WP_150359445.1|1834286_1835276_+|FAA-hydrolase-family-protein
MKLGSLKEGGRDGTLIVVSRDLRHGVRATGIAATLQQALEDWSHIAPRLNALYESLNAGDADGVFDLDPQALAAPMPRAYEFVDGSAYLPHVERVRRARGAEVPESFYTDPLMYQATSAGFYGPRDAVKVVSEEYGIDLEAEIVVITDDVPMAATPEQAAGHIQLVGLVNDVSLRNLIPGELAKGFGFLQSKPRSALSPVFVTPDELGAAWQDSKVHLPLLTHINGKWFGAPEAGVDMQFNFAQLVAHAAKTRPLGAGTIVGSGTIANEDTSKGASCFAEQRVVETLRDGKPSTPFMSFGDVVRIEMLDAAGNSIFGAIEQRIEQAARP
>NZ_CP044092.1|WP_005412154.1|1831936_1833349_-|DEAD/DEAH-box-helicase
MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQHLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHLLAQDSREQTLVFARTKHGSDKLASFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLRAIVRLLGRDMDIRDVPGFELQVPIRWGNSAPGKAEHDTGERAPRKSHARRPHGDAPRHAHAGPKKAGGGRREGGGNGQQRAGAGQGQRRGGGGNGGGRGRGQGGGGGRAG
>NZ_CP044092.1|WP_150359444.1|1828800_1831395_+|peptidase-M14
MSLHRRAVLPLLLATATALSSPQPAQAQSAYFFPQVTDAAAFDAAVPTPEQFLGYPIGSRYTRHDQLVAYFQELAKRSDKISVREIGHSYEGRPLLIATVTAAGNHARLEQIRQQHATLADPAQPRSAAGDSPVVVWLGYSVHGNETSSAEAAMLTAYYLVANRSAETQQWLQQAVVLFDPAQNPDGRDRAANWHNAWASDPASADPADKEHVEPFPQGRTNHYFTDLNRDWLALTQQDSRPKVEVFHQWYPNVQIDFHEMGKDSTYYFEPSPKSMHSPLIPAASYEFNKTLAKYHAQALDALGSLYYTGENFDNFSPVYGSTYPDFHGAVGVTVEQASSRGRVQESVNGLLTFPFTIRNQVATGLGTVRGAVTERSGLFDLQKQFFQSALKQAAQQPVKSFVFGDAHDPALTRRLLELLLLHRIEVRALDRAVTVDGQRFDAGSAYVVPVQQAQFRLVHSIFAETPPIKGDVFYGSTSYAIAPAYGVAFAGSRSRIEGGARVAALPVEQGAVLGGEAGFAYAIDWRDYNAGRVLAALQGKGVNARAAFQPFTTATAQGDISFAAGSLVIPVAGQSLQGAALLETVTSAAREAGVQVHALSSGRSREGIDLGSDGVKALRKPAVALVMGEGVAATEIGSAWFLLDQQLQLPASKLDPQQLGKVPLDRYTTIVLSGGTYTGVDATAVAALKRWVQAGGSLVTYGSASKWAIEQKLADGEKLGKEEEAADASRRAFGDQRDIAAIERVSGNILSADVDTSHPLAFGVPRRQLAINKENTVTLQPSANPFSTVVRIDTPPRVNGYLSERNRTRVAGSAWLLVSAQGQGNVVLFADDPAHRKYWHGTDRLLINAIFFGNLVNPSKARG
>NZ_CP044092.1|WP_005412152.1|1826086_1828726_+|TonB-dependent-receptor
MPKHTLLVAALAVALAAPLSAAAETSADASGEASTLAAVRVTGSNIKRTDTEASNPVQVIGRQQLEQTGKATVADVLRSISANTGNASNETTNNGWASGSAGIGLRGLSQKNTLVLLNGRRLANYGFPAGGLSDTFVDLNALPLVAVERIEVLKDGASAVYGSDAVAGVVNIITRQNFEGAEIGGSFGGADQGGLHEQNLKFVGGLGDLDTDGYNILFSLQGYNRERLDQDERNLTRSGIYTDKPGGRWNGWSAKGARYLVNGVSVPMLDANGNCPTGTTRVASAPIDGLAGDTCGFNQAPFTTLIPSTKRYQAYANGTFRLNDNVEAFGEVLYSQIKSAAWFGSSPFFTLESGRFALNANSGLAEPVSSLLPANNPYNPYGRAVPIEYTFFDLGGTIKTNRSTAYRGVFGLRGTTASWDWEVAAFGARSSERESVSGGFANRWALADALATGSYNLLNPAATPQSVRDSINIATLRPAESKLQGIDAKISGSLGHTWAGEIGFAAGAEWRREKLDSNNPWQIDAGLQVRPAIAEVHGKRQVSAAYAEVNVPLASTLELSAAARADHYDDFGDAFSPKIGLRWQPLDVLLVRASASKGFRAPSLSENSNSTSIAYGSVVDPRDPDVPGSRQNPTFFTVGNNELKPERTRSVNFGVVLSPWANTNLSVDYYRIQLDNLVGTNNTQTLVNDNVAGAVQRDERGKLQAVYNRYQNLSELKTSGIDVELRQRIPTAALGDFTVSSAYTHVRDYRRPTVVGGPLVDYAGSNLGATLPKDKATTTLDWKYGDFNAAVTWYYTSSYRQEASTAAKAVQQRVGSYSQYDLYLAYTGIDKLTVYAKVQNLADKTPPYDASFPGIRAPYDFSQYDLRGRYFTLGFDYRF
>NZ_CP044092.1|WP_005407953.1|1825531_1825894_-|6-carboxytetrahydropterin-synthase-QueD
MEIFKVFMLEAAHRLPNVPPGHKCARLHGHSFRVELKVEGEPGAQTGWIMDFGDVKAAFQPIYDRLDHHYLNDIPGLENPTSENLAVWIWNELKPSLPALSEITVHETCTSGCRYRGPTA
>NZ_CP044092.1|WP_005407964.1|1841677_1841914_+|YdcH-family-protein
MFEDQPQSEIDARRARDPEFRALHDQHRKLNKKCMDAELGVLPIDDVTLGRMKREKLLAKQRLLRMYETPLPTTSPTL
>NZ_CP044092.1|WP_005407965.1|1842214_1843585_+|pyridoxal-phosphate-dependent-enzyme
MPIHSSVLELIGQTPIVKAQRLDTGVCELYLKLESANPGGSIKDRIGLSMIEAAEQRGDLKPGATLVEGTAGNTGLGLALVAQQKGYKLILVVPDKMSREKIFNLKAMGAEVRLTRSDVAKGHPEYYQDLAKTIAEQTPGAYFINQFGNPDNPAAHEFGTGPEILEQMGGDLDAIVFGCGSSGTMTGLSRAFAKLSPKTELVLADPVGSILAEYINDGVLNDKSGSWLVEGIGEDFLPSISDFSRVKKAYAISDAESFHTARELLGKEGILGGSSTGTLLAAALKYCKEQTTPKKVLVLVCDTGNKYLSKMYNDYWMLDNGFLERPQHGDLRDLILRPYGQRDTVVIGPNDLLTTAYQRMKLYDVSQLPVMDGDQLVGIVDESDVLLHVYGDEARFRDTVATAMVSKLDRLDVKSPIEALLPVFDRGQVAIVMDGNAFLGLITRIDLLNYLRRRVQ
>NZ_CP044092.1|WP_111111839.1|1843708_1844881_+|cystathionine-gamma-synthase
MSNATSQDRALALATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVASLEGGTRGFAFASGMAASSTVIELLDAGSHVVAMDDIYGGSFRLFERVRRRTAGLDFSFVDLTDLAAFEASITSKTKMVWIETPTNPMLKIVDIAAVAAIAKRHGLIVVVDNTFASPMLQRPLELGADLVLHSATKYLNGHSDMVGGMVVVGDNAELAEQMAFLQNSVGGVQGPFDSFLALRGLKTLPLRMKAHCANALALAQWLEKHPAVEKVIYPGLPSHPQHELAGRQMAGYGGIVSIVLKGGFEAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGVEDLGDLQVDLERALG
>NZ_CP044092.1|WP_111111838.1|1844880_1845705_+|ABC-transporter-permease
MATHDESASPIALVRGLVAKRSLILALAKRDVVGRYRGSFMGLMWSFFYPLMMLAVYTFVFSVVFGARWQGGTGSKTEFALVLFTGLLAFNFFSECLARAPGIIVGNVNYVKKVVFPLEVLAVVNLLSAGFHLLISTCVWLVFYLALFGMPSAEIFWLPVALLPLIFLTLGLSWFLGSLGVYMRDVSQVVNVLITVLMFMSPIFYAVAAMPEKYRPFILANPLTVIIEQVRTVMIWKGGIDWHVWAWFVPATMVFAWLGYAWFQKTRKGFADVL
>NZ_CP044092.1|WP_150359448.1|1845694_1846978_+|ATP-binding-cassette-domain-containing-protein
MSSELPVIEVEGLSKSYFIYDTPRDRLKQFVLPRLRRLFGLPARKYYSDFHALESVSFSVGRGETVGIIGRNGCGKSTLLQMVCGTLTPTSGRIVTRGRIAALLELGSGFNPEFTGRENVYLNAAILGLTPKEIDARYEEIAKFADIGRFIDQPIKTYSSGMVVRLAFATAIHVDPDILVVDEALSVGDTAFQQKCLNRIRSMQRDGVSILLVTHSSNALIEYCDRGIYLRRGHMVMDGPCRDVVKVYSDDVVAEEGGITFDMHPASEDDPQDGVVEHDRAAGEGATRLVIQSVALQDASGAAIAAVTQGESINIRVKVQVDEVIKDPCFGVQIMSTDGISLWSATTQSMNEEVQVLQPGLHEVTWTLRANFSGNRYILAIGVGLIENGEYRRTHRLPYAGHFDVVSEPQGGAGWLAPQPRINIQSP
>NZ_CP044092.1|WP_150359449.1|1846998_1850004_+|glycosyltransferase
MHMKSAVKVIAFGWYGAGNVGDELLLATLVDWVREAGGDVVAISVDPAYTSRVLGVDSVDLTDLDGIAREMSDADLFVLGGGGLFQTYQPLTISGLYDFNKPDVAVYARLLMMGRQFGLRTVAWAQGVGPIEGAESRRLLSEVFQNVDDVTVRDLGSMSLLKEIGVERDVAVAPDPIWALPTPPPAAVGGDKQNLRIAMVLRPWGFVPGWEERFVEALRDSMAGTGATLVWIPYQGRSVPGRSASDSSFIQTLIDAVGEGFVHEVVDVDVPQNAVDAMAGCDGLISMRLHAQIVGAQMQLPMLCIEYDEKLSVASEDSGISPDLRLRPDAGQDRWHTVFQHWLKDVRNGVPSVSKDHLVQLREGAELHRQALRQSLQSAAAHRPDWRMGRFDWLGLWSQQRSQRLLEQQDLHAREMARLHGNQLDQLLVQVAAQQALATDQQALVAHQQALVATQQRDFEAALTLVRNELTEKAKRAEAFSLALSRLAQRAAASVGASVPEASNESTDAEIQWAASVAGMVETLWDQAIDSGKSGELARNALQAESGLLAARAKAAEMEARFLATEVSALRHSTSWRVTRPLRSLSRFLKDPRREIGEIRRWLRPRSGAAPLPVPVPGSVSAAAPLHPDLTWAEFSDRVLSKRDQFRGVFVQEMAIDWDVPLYQRPQHICAAMTRLGYLVIYRTGNWAGDNVNGFREVLPNLWLTNSAEVDLIPSTVRSIYSTAYAYSPARVSEFSDSNVIVYEYIDHIDPQISGDSDNIARLVNLKDWAFAGGADIVVASAAALAEEAVAAVGESRVIVAQNGVDTLHYRNTDHDQVEIPAELVEFRKKYSKVVGYFGAIAPWLWYEGIQALTKARPDIGFVFIGPDYYGGVKSLPTDENVLYLGSVNYKILPAYAKQFDVCFIPFEPGEIARTTSPLKLFEYFALERPVVVTAWMNECVAHPEVYRGSSVAELSQAIDAAFAVKDDPAMRRRYVEMADENSWNSRAEAISAAFDLLGRR
>NZ_CP044092.1|WP_150359450.1|1850266_1850695_+|hypothetical-protein
MLLNSVVAGWMLFAADRLDSTRHRVPTLLIVAYLMLLAPFASIVQVDMVAAGWLIAAIWFGKRLAAQGGLANAVWTVVFLGLTGATRTQYFLVFLAMAGILLPCKILLTGGRQEATADACRPTAAGCRAGRDTRFCFALAGG
>NZ_CP044092.1|WP_150359451.1|1851038_1852583_+|hypothetical-protein
MILLLAGIGLGIAGRDWVGALALAVWVLGFWFVHGLLEVQGRYFLGMVLAIPFLYAVVAERRQWTSPQATSRLSVGREYWVRFMSLVTKFKGELIQAAGMTLLWTLAAWWLASTFLPAPISDWEYYWYAASALDDYHRGGLALLLLAAPKALGLSPWLSALLLNVAAVFCLAMACNHLDRSRYRLPTVLLWLYLCLLVPYAGIVQLDMLSAAALAIAIVSGRAFLLGADRRGAALMVLALVFATSTRTQYSLVLLAFVALLAPFTLLRPRRARWTWLLCLVAVGAVLGGVVDSAWRSKAGNAGSFRTGLGVTLYNGLLTSSTDAATCGAWSPGGTQAAAEDLHLSLPQAVRNRLAAQDSGHWLKVVECKTRMIVLAQPYAWYWFSDAPVAKDKLAAHPFFASRMGELTQWYDRVYKIARTLILLLVMVTVFLAVRRRALLDAAIPLAWLVSFWCVHVALEIQGRYFLGMLLLAPLLCAAVWPCLHGWKLGAERKSVAGERVDEAAESASTRVPE
>NZ_CP044092.1|WP_150359452.1|1852582_1853893_+|glycosyltransferase
MRILISAHDFSPNPSPQSLRITQLATELANGGFEIDVLTRTVGAGMQVQPEPIGVQVHRAAPGWLEAALDAVSTRLRRRTGRARDASEDERAAGSAKTAALLNWKGRWVLRLRAVVDAAVFPDGRSRWITHALREGRRLLLQRRPQVIIGSHEPAAGLMVALTLSRESGVPLVSELGDPVLTAYTPKRWMQRSFALERRVCRESAALIVTSEATAELLRQRHGEDIAPITVIPQGFPVAAVSAPVRTAFGNGLALVYTGRFYPFRDPAPLFEAVLATPGATLTVAGPGIPPKFAALFAQHPEQLRYVGNKAHAAAVELQQQADVLVSIGNAGMTQIPGKLLEYLGSGRPVLHLQPDQADAAAAIIRKEQCGFLVAPQAGQLAELLRDLVQRKQQGRLEAGLRLGAETFAEYRWDRLAARLAEVCRAAAAAGTRHRD
>NZ_CP044092.1|WP_111111833.1|1853912_1855031_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MVVFGTRPEAIKMAPVVEALKARPEIETIVAVTAQHRQMLDQVMDLFSITPDVDLNVMEPGQTLAGLFAKILTGMTAVIAEHKPDLVLVHGDTSTTLASALAAFYNRVAVGHVEAGLRTGDIYAPWPEEANRRLTGPLTRLHFAPTTRSRDNLLAEGTSSDDIHVTGNTVIDALLNVADKLKHDTALIESMRARFPFLDASKRLVLVTGHRRENFGSGFESICEALKALAARGDTQIVYPVHLNPNVQGPVNRILADAPGVVLIEPQDYLPFVYLMTQATLIITDSGGVQEEAPSLGKPVLVMRDTTERPEAVDAGTVRLVGTDAQRIVAEASQLLDDPQAYQQMSRAHNPYGDGLASKRIAEIIISGHSTL

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Crispr_ID: NZ_CP044092_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_9

2027110-2027209

Orphan

Consensus_repeat	Method
TCATCCACGCATGGCGTGGATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044092_9

>merge|NZ_CP044092|9|2027110-2027209|CRISPRCasFinder
TCATCCACGCATGGCGTGGATCTGCCTCATTGAAAGGCAAACAAAAAAAGCCCGGGTGTCTGCACACCCGGGCTTCTTCATCCACGCATGGCGTGGATCT

>NZ_CP044092|9|8|2027110-2027209|CRISPRCasFinder
TCATCCACGCATGGCGTGGATCT	GCCTCATTGAAAGGCAAACAAAAAAAGCCCGGGTGTCTGCACACCCGGGCTTCT
TCATCCACGCATGGCGTGGATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_150359480.1\|2039438_2040083_+\|arylesterase	unknown	unknown	gnl\|CDD\|238860
NZ_CP044092.1\|WP_005408103.1\|2014315_2015527_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP044092.1\|WP_049459459.1\|2017561_2018362_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|277343
NZ_CP044092.1\|WP_099472857.1\|2034251_2035178_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_087802802.1\|2035707_2036124_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_150359479.1\|2036202_2038719_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NZ_CP044092.1\|WP_005408115.1\|2028198_2029497_-\|nucleoside-transporter-NupC	unknown	unknown	gnl\|CDD\|224883
NZ_CP044092.1\|WP_043035378.1\|2022617_2023445_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|181382
NZ_CP044092.1\|WP_049459456.1\|2020628_2022479_-\|membrane-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_049459457.1\|2019621_2020632_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_CP044092.1\|WP_111118163.1\|2023502_2024498_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP044092.1\|WP_150359477.1\|2018512_2019571_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP044092.1\|WP_005412278.1\|2030974_2031169_+\|hemin-uptake-protein-HemP	unknown	unknown	gnl\|CDD\|378463
NZ_CP044092.1\|WP_150359478.1\|2029690_2030662_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381369
NZ_CP044092.1\|WP_005412266.1\|2013695_2014202_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP044092.1\|WP_024957309.1\|2038715_2039363_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226647
NZ_CP044092.1\|WP_005408112.1\|2024911_2025829_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176164
NZ_CP044092.1\|WP_150359988.1\|2031358_2033575_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP044092.1\|WP_150359476.1\|2015849_2017565_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|153248
NZ_CP044092.1\|WP_005408118.1\|2033579_2034179_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226243

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_005408103.1\|2014315_2015527_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP044092.1\|WP_049459459.1\|2017561_2018362_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.42275e-69
NZ_CP044092.1\|WP_150359480.1\|2039438_2040083_+\|arylesterase	gnl\|CDD\|238860	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.	6.00759e-85
NZ_CP044092.1\|WP_150359479.1\|2036202_2038719_-\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	7.80675e-177
NZ_CP044092.1\|WP_005408115.1\|2028198_2029497_-\|nucleoside-transporter-NupC	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	9.89476e-142
NZ_CP044092.1\|WP_043035378.1\|2022617_2023445_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	4.01978e-27
NZ_CP044092.1\|WP_150359988.1\|2031358_2033575_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.3477e-124
NZ_CP044092.1\|WP_049459457.1\|2019621_2020632_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.39257e-44
NZ_CP044092.1\|WP_111118163.1\|2023502_2024498_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.10606e-146
NZ_CP044092.1\|WP_150359477.1\|2018512_2019571_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	1.03721e-25
NZ_CP044092.1\|WP_005412278.1\|2030974_2031169_+\|hemin-uptake-protein-HemP	gnl\|CDD\|378463	pfam10636, hemP, Hemin uptake protein hemP. This is a bacterial family of proteins that are involved in the uptake of the iron source hemin.	2.47066e-16
NZ_CP044092.1\|WP_150359478.1\|2029690_2030662_+\|aldo/keto-reductase	gnl\|CDD\|381369	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR). Voltage-gated potassium channel subunit beta (KCAB) from Arabidopsis thaliana and Egeria densa are founding members of aldo-keto reductase family 6 member C1 (AKR6C1) and C2 (AKR6C2), respectively. KCAB, also called Shaker channel b-subunit, or K(+) channel subunit beta, or potassium voltage beta 1, or KV-beta1, or KAB1, is a probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit.	0
NZ_CP044092.1\|WP_005412266.1\|2013695_2014202_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	2.57412e-64
NZ_CP044092.1\|WP_005408112.1\|2024911_2025829_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176164	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 6. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.50983e-84
NZ_CP044092.1\|WP_024957309.1\|2038715_2039363_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226647	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	3.89092e-97
NZ_CP044092.1\|WP_150359476.1\|2015849_2017565_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|153248	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.	9.3519e-58
NZ_CP044092.1\|WP_005408118.1\|2033579_2034179_+\|hypothetical-protein	gnl\|CDD\|226243	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism].	0.00232894

>NZ_CP044092.1|WP_005408112.1|2024911_2025829_-|LysR-family-transcriptional-regulator
MLPTERLRGIEAFVATADAGSFTAAAERLHLTSSAVGKTIARLEARLGARLFERSTRRLRLTEAGEGFYRTCVRVLGELADAESVLVSHADAPVGRLRVDAPATFGRLKVWPLLLQLAAEFPQLHPQVTFSDRFSDLAEDGVDLAVRIGGPEPLPATLGSRLLGYECLRFCASPAYLLRHGQPRSAAELAGHDGVLFGRADGSIGPWQVADGRQRSTPLQARARLVVGSAEAQVAAVEAGFGIAQLATWLVDDALARGSLVSILPSLDCRGLPLRLLWPQGRQRLPRVDVALDRLGAGLQIDPPR
>NZ_CP044092.1|WP_111118163.1|2023502_2024498_-|tRNA-dihydrouridine-synthase-DusB
MQIGPYTIAPNVVLAPMAGVTDKPFRLLCKRLGAGLAASEMTISDPRFWNTRKSIHRMDHDGEPAPISVQIAGTEPQQLAEAARYNVDHGAQIIDINMGCPAKKVCNAWAGSALMRDEQLVARILEAVVNEVDVPVTLKIRTGWDCDHRNGPLIARIAEDSGIAALAVHGRTRDQHYTGQAEYATIGEIKAALRIPVIANGDIDSPQKAAYVLKETGVDAVMIGRSAQGRPWIFREVAHYLATGEELPPPSLAEVRDILLGHLHALHAFYGEPQGVRIARKHLGWYAKDRPENAAFRAVVNRAEDPASQIALTTEYFDRLIAGEPALPSAA
>NZ_CP044092.1|WP_043035378.1|2022617_2023445_-|class-I-SAM-dependent-methyltransferase
MTPPISSPTYLHGFSGTEQQRLMTQARLLESSIFGQIDYSGARRLLEVGSGVGAQTEILLRRFPELHVTGVDLSETQLATARENLARTPWCSDRYTLQQADASELPFEARSFDAAFLCWVLEHVPSPARVLSEVRRVLAPGSPVYITEVMNASFLLDPYSPHIWRYWMAFNDFQYDHGGDPFVGAKLGNLLLAGGFRDVHTEIKTIHLDNREPARRKTMIAFWEQLLLSAADQLLQAGSVDEETVEGMRREFRLVQNDPNAVFFYSFVQGRATVY
>NZ_CP044092.1|WP_049459456.1|2020628_2022479_-|membrane-protein
MDLTCERMMSDSGRTPFPAQDPGQTGGLRPGQVRLLAGIMALLCILYVALALTPSSYSLAYEYLGLTPQQPLLGTARYIRTDEWMVFTPYIQIAVNNDFGQFNAHSAYHESLRTFQALPLQDWGLLFKPYHWAFFMLPAANAYSFFFMFMAMAFLSGWALLLRQLRMPALAAVLVSTTLFFAPFVQVWWTSNAGAFALAPWAAVAWLGIGHRALRIVACAYALAAWLIAVSYPPFIISSVLALAVLVLAVRRDAITVVRLVDAAIAGAIALAVFVGYFHDIIPIVRNTVYPGQRQSAGGGVGLTSLLAHLFPNLMTYRFAPLPLFKASNDCEIAVLGSLLPLFTLVLADGARLREWAKSHRSSLLILAAGLLFIACWIFLPVPAVVGKLTTLSMVPPARALLAFGLLLNIACAMILVHCGVRLQRWRLLLLAALLMVGSLAKFLFGEGQFSRLHSAADAIPYLCLAALAVAARRPQLSVHAASLVLATAALANLLGNGLFNPVQPAGPIFAMDRTAVLHSLQARGSATTTEGALVAPGGFGALLPGVGIPAVNHVLYLPQMDYFRRYFPSLPDEQFDFTFNRYHHITVAPEGDAPRVLQGDLVELPAKPLLAHPAP
>NZ_CP044092.1|WP_049459457.1|2019621_2020632_-|glycosyltransferase-family-2-protein
MNPMTTTSPSASTPARIAVIIPCYKVTRHVLSVLAAIDDAVTAIYCVDDACPDGSGRLIQAEANDPRITVLFHQHNLGVGGAIKTGYRAAIADGMDILVKVDGDGQMDPALLMDFVAPIADGHADYTKGNRFWNLTHIRRMPPVRRLGNLLLSFMTKASSGYWQVFDPTNGYTAIHAKVASHLKLEAVSDRYFFETDMLFRLNTVRAVVQDVAMDAHYGDETSNLRIGRILGEFTFKHLRNTLKRIAYNYFLRDLSIASLELIAGSSLLAFGGLFGLYHWVRSAQADVATPVGTIMIAMVALISGLQFLLAFVGFDIANVPRQVLNRSIKLNRQPQ
>NZ_CP044092.1|WP_150359477.1|2018512_2019571_+|metal-dependent-hydrolase
MDSLTQIVLGGAVAAAIAPPGHRRAALLAGAALGTLPDLDALWLGFTATDPVANMVEHRSFSHSLLVLPWVAALIWWLFKRFGNGRVAQSPVRWFWAIQLALVTHPVLDAFTVYGTQLWWPLRPHPTMGSSVFIIDPAYTVWLLLGCVVAWFGRARPWVGKVLGVSLLVSSAYLGWGLIAKAQVDRAAQQSLAAMGLGDAPRFSVPMPFNTLLWRVVAMTPNGYVVGDRSLVADHGPMQFEGHPSNVQALREAQAIPAVQRLQWFNRGFMRAQVVDGRLVLSDLRMGLEPDYTFNFAVAEQVGGQWRPIVPEQLRVDYSSPAARADAGRRLAAMWQRIWHEPAASATGAAHP
>NZ_CP044092.1|WP_049459459.1|2017561_2018362_+|UDP-2,3-diacylglucosamine-diphosphatase
MSVLANLSPHRRAVFVSDVHLGSRHCHATELARFLSQLRCERLYLVGDIIDLWWMAHRRANWRQSHSEVIQALHALRRAGTEIIYIPGNHDASLRQVCGLMLPAMQVRRRAIHVTADGRRLLVAHGDDYDGVTHFGGLQEKFGDWLYYRILTGNQALNAVRRRLGMRYWSLSEFLKKRSGAAERYIERFVQAGLDDVRRRGLDGIVCGHIHRAALVERDGLVYANDGDWVESLTALVEDHDGALRLLDHNGQTLVELPGARLSQAA
>NZ_CP044092.1|WP_150359476.1|2015849_2017565_+|GNAT-family-N-acetyltransferase
MQELEQRLQQRFPDWFHGRRGQLARPLLRSVGRWSRLDQIEAFLQRSAGLRGFGFVAAGLEFIDGQYQVDPAALAKIPATGRLLIVANHPSGALDALALLDAVGRIRRDVRIVANDLLGAIAPLQDLLLPVRILGGKAQRGSLHAVEEALAAEQCVIVFPAGEVSRLSLRGIRDGRWQRGFVRFARAAGAPVLPVRVEARNSALFYGASTLFKPAGTALLAREMFTRRGRPLRLSIGEPMQLGKGGDPGAQLLAVRRALYALGRNGAAGNAAAFAGPEPLAAPVPPSQVAAGIAAATQLGQTADGKQILLATCTADSPLLLELGRLRELTFRQVGEGTGRSRDLDDFDSRYEHIVIWDAAAQRIAGAYRIMRGAHALARHGLSGLYSASLFRYSDDAITHIAEGLELGRSFVVPDYWGSRSLDYLWQGIGAYLQCRPGIRYLFGAVSISAALPRDAREQLVAYYQRYYSGTAGLAESNRPFQYFAAPPSFGELDAGAAFDVLKANLAALGTGVPTLYRQYTDLCEPGGARFLAFGVDPDFSDSIDGLIEVDLCAIRPNKRKRYLRDAGMPA
>NZ_CP044092.1|WP_005408103.1|2014315_2015527_-|methionine-adenosyltransferase
MSSYLFTSESVSEGHPDKVADQISDAVLDAILTQDQRARVACETMVKTGVAIVAGEITTSAWIDLEALTRKVITDIGYDSSDVGFDGATCGVLNLIGKQSPHIAQGVDRKKPEEMGAGDQGLMFGYATNETDSYMPAAIHLSHRLVEQQAKIRKKKNSPLSWLRPDAKSQVTLRYENGVVSAIDAVVLSTQHAPGIKQKDLIEAVREEIIKPVLPAKWLHKGTKFHINPTGKFEIGGPVGDCGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIIKMLDLIHPMYQQTAAYGHFGRKPKEFSYLNGEGETVNATAFSWEKTDRAAALRADAKLK
>NZ_CP044092.1|WP_005412266.1|2013695_2014202_-|acyl-CoA-thioesterase
MSTELKTHQLSMTVLMSPEMANFSGKVHGGAILRLLDQVAYACASRYAGSYVVTLSVDQVMFRQPIAVGELVTFLASVNYTGTSSMEIGIKVVAEDILKRSVRHANSCFFTMVAVDEEGRPTPVPPLQPVTSDEKRRQAAALIRRQLRQEMEQRHLELLASNPPSPEE
>NZ_CP044092.1|WP_005408115.1|2028198_2029497_-|nucleoside-transporter-NupC
MVEGLGRIGFGLFGLAVLIGITWLFSNNKRAVDWKLVATGITLQIAFAALVILVPGGRDVFDALGHGFVKVLSFVNEGSGFIFGSLMDTKNYGFIFAFQVLPTIIFFSALMGVMYHLNIMQAIVRVMAWAITKVMRVSGAETTSVCASVFIGQTEAPLTVRPYIARMTQSELLTMMIGGMAHIAGGVLAAYVGMLGGGDPAQQAFYAKHLLAASIMAAPATLVVAKLLIPETGTPLTRGTVKMEVEKTSSNIIDAAAAGAGDGLKLALNIGAMLLAFIALIALLNAPLTWIGEVTGLAAQIGKPTNLSTIFGYLLAPIAWVIGTPWADATTVGSLIGQKVVINEFVAYTELSQIVNGQVAGVSLSSEGRLIATYALCGFANFSSIAIQIGGIGGLAPERRHDLAKFGLRAVLGGTIATFMTATIAGVLTHFS
>NZ_CP044092.1|WP_150359478.1|2029690_2030662_+|aldo/keto-reductase
MQYRRLGSTGLPISALSFGAWVTFGDQIPRDEARNLVAAAWDHGVNFFDNAEGYANGRAEQVMGDVIADLRLPRDGFCVSSKVFFGSAKDPRPTQRGLSRKHVTDACHAALKRLRVDYLDLYYCHRPDPDAPIAETVHAMDTLVRQGKILYWGTSEWSAVQIQQALDIAEARNLQGPSMEQPQHNLLHRERVEVEYAPLYAGAGLGTTIFSPLASGLLTGKYDQGIPADARLGREGMEWLQDLVLGADAGARLGQVRRFSEVARALGHAPATLAIAWCLRNPNVSSVILGASRVSQLLQNLQALDVLEQVDAAGWADVEAAFA
>NZ_CP044092.1|WP_005412278.1|2030974_2031169_+|hemin-uptake-protein-HemP
MNAQPVLLRPETLTLRDRPVRVVPPEEVIDSEALLKGRREILIQHGDRFYRLRHTSNDKLILTK
>NZ_CP044092.1|WP_150359988.1|2031358_2033575_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MALPLSAHAAATAATAAPDAREFDRVQVTATRTERAVSDVAATVDVIDREQMDRHLVQDIKDLVRYEPGLSVTRSATRFGLDGFRIRGLDGNRVRIQTDGIVMPTRFDIGSFASSNRNFTDLDTLKRVEIVRGPASSLYGSDALGGVVAFVTKDPADYLKDGKNSYFGLKFGYDGEWKGLLGGATAAFGGDHWSGLVNVNHHQGQETDNKGTVRSDNDTRTASNPQDRDGRSLLSKLVYAPSEDQRFRLTVEGNEDTTDTNVLSAIASVAPRPGAMAAATGMKSHDTQKRNRVSFAHEMDALDQPFADSLHWQVYAQNSETRQQTDETRTDGTRRHRVFSFDQHAYGLQAQFNKAFTTGSVEHALTYGFEGTRTEIRQKRDGYQVSKAGVVSNTVLPDTFPVRDFPISKTTELGLYAQDEMRFADGRLSLVPGVRVDRYELKPEVDGIFAEDNPTTAVAQLKKTSVSPKLGMVWRFTDEWSLFAGYARGFRSPPYNDVNIGLTNVAFRYTAIANPDLKPETSDGYELGLRFIAPAAYVSVSGYYNDYKDFIQSNVDTGRNAQGLTVFQSQNIADARIYGAEMKAGIEFGELSPALKGWALRSALAWSRGDNRTDDEPLASVDPLRGTLGLMYDTDTWGVELAGTFVQRKKRLPPPAAQTNPNAPAPFVYQPAGYGVLDLMAHWNFAPGATFNVGVFNLADKRYIEWSSITPSLITDRALSDRFSSPGRTFSASLAVSW
>NZ_CP044092.1|WP_005408118.1|2033579_2034179_+|hypothetical-protein
MSRALSARRNDSIAAPNSAAWPTPAQLATLGTVLCLYHADGNELGGWRQAVRVHACQGVDSEGLRESLCFLDGRGRCVWRLYLLPDSDFLAWDRLVAALPPGPEHDSEASVGERLWRRLAGHLGGQRWRLCALRLHAADDGRTLAASLSTLSSLGAATARRIARLEGAEGELAIDDCCCADAARRPAPQIPGDLPLIRL
>NZ_CP044092.1|WP_099472857.1|2034251_2035178_+|hypothetical-protein
MKLQTASAMLLLAASGVASAQPSDIARDHDSILAMQGEYTVDFAFDETVLLKPGYERAPAMRSGGSEVVIVVEDTPKRIVLQHLLLDEKSGHITKHWRQDWVYEAPNRFEFSADQTWKVRSIPTAVNQGAWTQCVYEVSDAPRYCGTGTWTYTNNVPSWTSDLSWRPLPRREYTKRSDYNALAVVNRHTLTPNGWTHEQFNTKVQRNADGSQVEIAREFGFNDYVKTTEVDFTPARNYWKATAGYWAKVRQRWDGFLTQAPGVHLKTRIDGMAMIIPLFTQAEAIQSGKKVKDKQIDEVFAKCVEKAQ
>NZ_CP044092.1|WP_087802802.1|2035707_2036124_+|hypothetical-protein
MLMVVPERQMFDTYLSDPQVYDRLEQHIHDHFMTGINAASLRIEDFRSPHYNTFFVDGTKDRDANPIFSAKHLPSGNIVRIVIFDSPPEYSEVRKRVGDNEEKDELCLFITLLGVQRAMSTTVAWAQQQASIIPATRQ
>NZ_CP044092.1|WP_150359479.1|2036202_2038719_-|FtsX-like-permease-family-protein
MNLLRHAWRALRREALAGDLLTVFAALVLGVTVMTAVGTLVNRVNLALTGSAAEMLGGDLGIAGRDDPPQAFADEAQRRGLAFTRIASFGSVLFNGDASQMASIKAVQAGYPLRGTLRVRSTPGGALIANAGTPPKGQAYADPRLLQGLGLKAGDDLEFGAGTLRIAGIIEAEPDAGGDLLTLSPTLLVNRADVEGTGLLGPGSRINYRLMFAGSADQVAALRQWLLPQVKGLRLLSVDDTQRGVRQAFDLAGRFLGLSALLAVLLAGVATALAANRFALRRIDQVAILRCLGARQRDILSGLALQLLMLAVPACALGIGLGMAAQEGLVQVLGSLVPQRLPLPEAMPALTGAGIGLLLLFGFGLPPLLRLRGVPPMRVLNRSFAALPPASLLAYVAALAASLLLAVQVTGDLKLALWVLGGLAALAMAAGVVGFVLLQLLRGLQHRLHGHWRLGLAALTRRRMLAVMQLVGLSLSLCALLLLAVTGPGLLQQWRERLPADTPNYFLINIQPEQRDSVLAALRGLGANDASIEPMATGRLIAINGKPPLRVDRSPDQSGQPASGEAQRDDDDENRPLNFSWRSSFPPANTLMNGTFWTPDSTAAEASVEIGWAKRYGVYPGDRITIAVGEQEREFTVTSVRKADWNTFRPNFFVLLNPNAVGDTPHNLLSAFHLPAGKAAGLGELIRAQPNLSLLDVDAVISQVRDVMERVAQAVQLVMVFSLLAGVLVLLAALQATAGERRYDSAVLRTLGATRRQLRGAVLVEFGALGTLAALLAVGAAAAIGVAVSQKVFELPLLPPWPGLLIGGVVGIGLSLLAGWWGTRAILHTPPALALREA
>NZ_CP044092.1|WP_024957309.1|2038715_2039363_-|ATP-binding-cassette-domain-containing-protein
MQGPEGEVHILDNITLTVHEGTSVAIVGASGSGKTTLLGLLAGLDLPSRGRIALAGQDLSALDEEARAQLRAREVGFVFQSFHLLPALTAAENVALPLELAGREDRARVDEVLAQVGLAHRARHYPRQLSGGEQQRVALARAFVTRPRILFADEPTGSLDHATGQHISDLLFELNAGSGTTLVLVTHDLRLAQRCQYIHRIDNGRLLPVERGAQA
>NZ_CP044092.1|WP_150359480.1|2039438_2040083_+|arylesterase
MRKTGWSRRAGAMMVLLLGFLLLPGLACAKGPAGTVLVLGDSLSAAHNIPADAGWVSLLQQRVRQQSKTPARIVNASMSGETTAGALTRLPALLAKEKPTVVVIALGGNDALRGLTPAQVQGNLGKMVQASQNAGAKVLLLGIDVPPNYGPAYRQRLAAAYRALATQYKVPLLPFLLEGVPLQPGMMQADGLHPTAQAQPKVLDNVWPLLRPLL

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Crispr_ID: NZ_CP044092_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_10

2090865-2090969

Orphan

Consensus_repeat	Method
TTTGCCGGCCAGCGGCCGGCACTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044092_10

>merge|NZ_CP044092|10|2090865-2090969|CRISPRCasFinder
TTTGCCGGCCAGCGGCCGGCACTACCCCATCCACGTGTGGCGGCTACATCGGGTAGGTGCGGGCCCTGGTCCGCACGCGTTTGCCGGCCAGCGGCCGGCACTACC

>NZ_CP044092|10|9|2090865-2090969|CRISPRCasFinder
TTTGCCGGCCAGCGGCCGGCACTACC	CCATCCACGTGTGGCGGCTACATCGGGTAGGTGCGGGCCCTGGTCCGCACGCG
TTTGCCGGCCAGCGGCCGGCACTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_150359492.1\|2088036_2088363_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_150359494.1\|2089042_2089363_+\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|378941
NZ_CP044092.1\|WP_012479217.1\|2087571_2088033_-\|DUF3106-domain-containing-protein	unknown	unknown	gnl\|CDD\|378633
NZ_CP044092.1\|WP_005408165.1\|2081601_2082156_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_CP044092.1\|WP_150359489.1\|2082152_2083088_-\|exodeoxyribonuclease-IX	unknown	unknown	gnl\|CDD\|235591
NZ_CP044092.1\|WP_099530779.1\|2083084_2083666_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
NZ_CP044092.1\|WP_005408178.1\|2093730_2095473_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173820
NZ_CP044092.1\|WP_150359493.1\|2088359_2088944_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236367
NZ_CP044092.1\|WP_005408180.1\|2096159_2096495_-\|DUF2069-domain-containing-protein	unknown	unknown	gnl\|CDD\|378269
NZ_CP044092.1\|WP_012479220.1\|2089359_2090820_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	unknown	unknown	gnl\|CDD\|376743
NZ_CP044092.1\|WP_005408184.1\|2099578_2100361_-\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NZ_CP044092.1\|WP_005408181.1\|2096491_2097085_-\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP044092.1\|WP_010481766.1\|2095594_2096080_-\|asparaginase	unknown	unknown	gnl\|CDD\|223330
NZ_CP044092.1\|WP_133050789.1\|2091030_2091450_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_005412326.1\|2092183_2093278_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
NZ_CP044092.1\|WP_150359490.1\|2083997_2086319_+\|DUF1631-family-protein	unknown	unknown	gnl\|CDD\|377917
NZ_CP044092.1\|WP_005408182.1\|2097162_2098437_+\|YihY-family-inner-membrane-protein	unknown	unknown	gnl\|CDD\|179791
NZ_CP044092.1\|WP_012479222.1\|2091572_2092124_+\|putative-Fe-S-cluster-assembly-protein-SufT	unknown	unknown	gnl\|CDD\|213809
NZ_CP044092.1\|WP_150359491.1\|2086370_2087450_+\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|240629
NZ_CP044092.1\|WP_133050788.1\|2098433_2099003_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_150359494.1\|2089042_2089363_+\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|378941	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch. PNTB_4TM is the region upstream of family PNTB, pfam02233, that carries four of this transporters transmembrane regions. PNTB is the beta-subunit of pyridine nucleotide transhydrogenase. This family forms part of the Proton-translocating Transhydrogenase (PTH) Family.	3.35783e-33
NZ_CP044092.1\|WP_012479217.1\|2087571_2088033_-\|DUF3106-domain-containing-protein	gnl\|CDD\|378633	pfam11304, DUF3106, Protein of unknown function (DUF3106). Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.	6.2439e-21
NZ_CP044092.1\|WP_005408165.1\|2081601_2082156_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	1.2487e-37
NZ_CP044092.1\|WP_150359489.1\|2082152_2083088_-\|exodeoxyribonuclease-IX	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	6.60025e-84
NZ_CP044092.1\|WP_012479222.1\|2091572_2092124_+\|putative-Fe-S-cluster-assembly-protein-SufT	gnl\|CDD\|213809	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	3.86367e-102
NZ_CP044092.1\|WP_005408178.1\|2093730_2095473_+\|S8-family-serine-peptidase	gnl\|CDD\|173820	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.39719e-125
NZ_CP044092.1\|WP_150359493.1\|2088359_2088944_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|236367	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated.	2.81209e-63
NZ_CP044092.1\|WP_005408180.1\|2096159_2096495_-\|DUF2069-domain-containing-protein	gnl\|CDD\|378269	pfam09842, DUF2069, Predicted membrane protein (DUF2069). This domain, found in various prokaryotes, has no known function.	0.000174062
NZ_CP044092.1\|WP_012479220.1\|2089359_2090820_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	gnl\|CDD\|376743	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyzes the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.	0
NZ_CP044092.1\|WP_005408184.1\|2099578_2100361_-\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	4.55689e-136
NZ_CP044092.1\|WP_005408181.1\|2096491_2097085_-\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	4.9247e-59
NZ_CP044092.1\|WP_010481766.1\|2095594_2096080_-\|asparaginase	gnl\|CDD\|223330	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis].	6.49e-30
NZ_CP044092.1\|WP_133050788.1\|2098433_2099003_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	3.29416e-35
NZ_CP044092.1\|WP_005412326.1\|2092183_2093278_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
NZ_CP044092.1\|WP_150359490.1\|2083997_2086319_+\|DUF1631-family-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0
NZ_CP044092.1\|WP_005408182.1\|2097162_2098437_+\|YihY-family-inner-membrane-protein	gnl\|CDD\|179791	PRK04214, rbn, ribonuclease BN/unknown domain fusion protein; Reviewed.	0
NZ_CP044092.1\|WP_099530779.1\|2083084_2083666_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	9.07218e-51
NZ_CP044092.1\|WP_150359491.1\|2086370_2087450_+\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0

>NZ_CP044092.1|WP_012479220.1|2089359_2090820_+|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta
MNISTVELLDWLVKASYLVAATLFLLGLQRMASPLTARSGIRWAGLGMLLATAATFFLPELHNVPLILVALLLGAGLAWWSAGKVAITDMPQMVALYNGMGGGSAAAIGAVELLRYAFLANRDTSHWSAQALADLAARQPSGTVLLLAVVGAAIGAVSLSGSVIAWAKLDGRLDKRVTWPGQQVMNLLVALAVVVLAIIAASTLSTWAIVAFFVLALTLGVLMTLPIGGADMPVVISLYNAFTGLAVSFEGYVLGNEALIIAGMMVGAAGILLTRLMAKAMNRPIRNVLFSNFGGGAGGEAQAISGSQKPIEAADVAAMMAFAERVVIVPGYGMAVAQAQHKIWELAQRLGQRGVKVKFAIHPVAGRMPGHMNVLLAEAGVPYDLIADMDDINPEFANTDVVLVIGANDVVNPVARTDPASPIYGMPVLDVVNARNVVVIKRGKGTGFAGIENALFYADNTRMLYGDGAEAAASLVSELKALDGGH
>NZ_CP044092.1|WP_150359494.1|2089042_2089363_+|NAD(P)-transhydrogenase-subunit-alpha
MSDGFVALYIFMLAAIAGHVIISRVPVILHTPLMSGSNFIHGIVLIGAMVVLGHAQTPLEKVLGFLAVVLGAGNAAGGYVVTARMLEMFKPSAPKAGKDEPKEPQA
>NZ_CP044092.1|WP_150359493.1|2088359_2088944_-|RNA-polymerase-sigma-factor
MVTPSEEPYPVLVSSPVPPSAETDALPASLEAFLASVGPRAFRFAEAGLHQREDAMDAVQDALLRMLDYADKPAAEWAPLFWSILRRRVIDVQRRRRFRLPFWRDNQDAEGGEIDWADPGPDPAQAHEQRQQYQQLVDALRRLPARQREAFTLRVLQDLDGATTARAMGCSEGAVKTHLARARQALQDYLEIRP
>NZ_CP044092.1|WP_150359492.1|2088036_2088363_-|hypothetical-protein
MNRSLPSDDTLRSLHTQSLHALSPATLARLRQARHGASATRHGRLRWWLASACSLVVALGIGLQFTGHGTLTGPAPAPVLASVEDNSALYDENPDLYLWLGDTDLAME
>NZ_CP044092.1|WP_012479217.1|2087571_2088033_-|DUF3106-domain-containing-protein
MSRLHTLPLLMTLLLLPALPALAQSAAPAPAARPAPATPLPAWEQLSEAQRESLLAPLRDRWNSADAGQRQRMLSHGQRWQTMSPEERDKARRGLRRFEHMSPEQREQARALFGQMRELPPAQRDALRERWSQMTPEQRKDWVRDNPPPAKPR
>NZ_CP044092.1|WP_150359491.1|2086370_2087450_+|NAD(P)-transhydrogenase-subunit-alpha
MAVALLGIKETAPGERRVALTPETARKLGALGITVWYEAGAGLAAGFTDAAYDDAGARAFDAGRWAEIDILLCVQAPPAAVLEQLKPGATVVGLLTPASDPGLAALAADDRLHLFPLQQLPRTTRAQAMDVLSSQAGMAGYKAALIAAERAPRFFPMLTTAAGTVRPAKVLVIGAGVAGLQAIATARRLGAQVEGFDVRPETREQIQSLGARFLDLGVSAAGEGGYARALTDEERAEQQRRLADHLRSVDVVICTAAVPGRPAPTIVTAAMVEGMATGSVIVDLAAESGGNCALTRPGQCIEHQGVTIDGPLGLASRGATQASEMYARNLLNFVALFVREGQLGFDWEDELLAKTRWHA
>NZ_CP044092.1|WP_150359490.1|2083997_2086319_+|DUF1631-family-protein
MMSAPTPMGSPGRDPAQLQRARDMVLPALCQAFGAALARFDDALFDRAGNAGSSQLLFLDAMRELRRRREDIAGAFSGHLQRAWDALASGEPMSAESTLSGPAEDGLSLLAEHVLESRLAVRNFATVLLRDFKPVLARLDRRLGRLVGGAELDADHNPISPEHLGVAIHEAFAGCELAPEVHLVLIKLCERDLRAPVGRIYEKLDEQLAAAGVMSQMGAPRRPPSAAPDPRMASGLDDLVEQRPGSGLDGEFGDDEQAAPAWAQRFAARWSERRGHMQQHLGAEGSGTGEAHAGQQGMLLEALHELLQQTRHVREDATSAAQVAIGQQRPLSQREMMSVLSLLQATPSATLRAAIGEDGESLAQRLKSEVLSSATRLGVDPGQTRLDPQDEDAIDLVGMLFDVMLDERELEGRSRELIGRLVVPFVKVAMLDRRMFVQKTHPARKLLNSLAEACEGNTGESQAERMLMAKVEEIIERLVAEFNENLAIFLTLEEEFREFLVQHRRRVEIAERRAAETQRGQEKLEMARTRAGAELDRRIGDATLPPAIAEFLRQPWQHHLTLALLREGEEGASVAEALSLGDGLLEEVAEARRQIVGKPWLQAWQPALAKVFASVGVHGDAATGAIDALHDTLRGIAESRPELQRALPELPQVALPTPPVAESPAVELGGQIDADDFDNADADRFRRMEIGNWLDFVDKDGKVQAGKLSWVSPISSRLLFVNRRGVRFCVASPEELAVMVRLGRLRAHVDDGAFDSAMQGVIDRLDPGSATLH
>NZ_CP044092.1|WP_099530779.1|2083084_2083666_-|nitroreductase
MPDPAALLALDARRSVPSRQLAEPGPDPATLQRMLASAVRVPDHGKRVPFRFLKIAGDARHTLGDFLAERSRQRDPHAGEAVFEKDRQRFSHAPLVIVVVASPRRDPKVPEQEQLMTAGCVCFALLQAAQALGFGAQWLTAWMAFDPAVHAYLGLAEGEGIAGFIHIGTPKAAVPERERPDPATLLRDWTPPA
>NZ_CP044092.1|WP_150359489.1|2082152_2083088_-|exodeoxyribonuclease-IX
MTLPVPPPSLYLVDASIYVFRAWHSLPDQFQDAQGWPTNAVHGFARFLLDLLERERPRHIAIAFDEALDSGFRHRLYPAYKANRDPAPEALKRQFVHCKALCAALGLAVLAHHEYEADDLIGSALHVHRGSHRGVIISADKDLSQLLLDHDEQWDYARNQRWNVAGVKARHGVHAHQIADYLALCGDAVDNIPGISGVGSKSAAVLLAHFGSMDALYERLDEVPFLRLRGAAQMAVRLREQREHAQLWRQLTTIALDAPLEGSQPGLLRQTADPELLGGLCQILRFGPMTRRRLFDAAGVPDILPTHSEPA
>NZ_CP044092.1|WP_005408165.1|2081601_2082156_-|NUDIX-hydrolase
MSQRNTEAPRVVYEGKYQRMLVRGTWEYSERTHAGGLAAIIIAVTPEDKVLFVEQFRVPLQAPTIEMPAGLVGDIHAGESIEVSAVRELEEETGWTADHAEVLLIGPTSSGASSEKIAFVRATGLRRVGEGGGDDSEDIIVHEIPRSEAAAWLVQKMGEGYELDAKLWAGLWMIEHHLDGRPRG
>NZ_CP044092.1|WP_133050789.1|2091030_2091450_-|hypothetical-protein
MYSNAARARTVTWLWPIMLLLGLVVAPLAWMVLALMTGRQVGWMAVLTALELVFMLRMGTLGPGRLRIVLVVVGTLLVAAVANWTIASAWMGGSIGLDLWDATMRMGPHLAWTLITLANGAVEWLWLAVAVAVGAWLAR
>NZ_CP044092.1|WP_012479222.1|2091572_2092124_+|putative-Fe-S-cluster-assembly-protein-SufT
MYSRSSEPVHFERDCEAVMVPQGDTVTLPAGSYGYITQALGGSYSVFVEGNLFRIAGKDGDAIGKEAPAPLELPADATDEQVEQLVWQQLRTCFDPEIPVNIVELGLVYEVEIKHLDEGQREIDVKMTLTAPGCGMGDILVDDVRSKLEMIPTVAEADVDLVFDPPWNQHMMSEAARLETGML
>NZ_CP044092.1|WP_005412326.1|2092183_2093278_+|branched-chain-amino-acid-aminotransferase
MSQSIPSFAVTRSDHPRSAEERAKILEKPGFGLHFTDHMVEVRWDKDAGWHNANVRAYGPLQLDPAAAVLHYGQEIFEGIKAYRHADGSIWTFRPDANGRRLQRSAQRLALPELPVEIFVESLKQLIAVDSDWVPSADESSLYFRPFMIGDEAFLGVRGAHKAGYYVIASPAGPYFAKGVAPVSIWLSTEYARAAKGGTGAAKCGGNYAASLLPQQKAQAQGCSQVLFLDPVEGKYLEELGGMNVFLVYKDGTLVTPELSGSILEGITRESILQLARDRGMKVEERKVSIDEWKDGVASGAISEVFACGTAAVVTPIGQLKGEGFSVGDINAPAGEVTMSLRKELTDIQYGRLPDRHNWLVKLG
>NZ_CP044092.1|WP_005408178.1|2093730_2095473_+|S8-family-serine-peptidase
MSQVTQPRVRRVWVVLGASVLSSLLLATPALAGDVQLSGLQSAPTHQRFIVKYRDGSAAVANTTALASSLKTAAAGLASSQGRALGLQQVRKLAVGPTLVKTDRPLDQAESELLMRKLAADPNVEYVEVDQIMRATLTPNDTRFSEQWGFGTSNAGINIRPAWDKATGTGVVVAVIDTGITNHADLNANILPGYDFISDAAMARDGGGRDNNPNDEGDWYGANECGSGIPASNSSWHGTHVAGTVAAVTNNSTGVAGTAFNAKVVPVRVLGKCGGYTSDIADAIVWASGGTVSGVPANANPAEVINLSLGGGGSCSTTYQNAINGAVGRGTTVVVAAGNSNTNVSSSVPANCPNVIAVAATTSAGARASFSNYGTGIDISAPGQSILSTLNTGTTTPGSATYASYNGTSMAAPHVAGVVALMQSVAPSPLSPAQVESIIKSTARPLPGACSGGCGAGIIDANAAVAAAINGGGNPNPGGNVLQNNVPVTGLGAATGAELNYTVAVPAGSTQLRVAISGGSGDADLYVRQGSAPTDTTYTCRPYLSGNSETCTINSPAAGTWYVRVKAYSTFSGLTLNAQY
>NZ_CP044092.1|WP_010481766.1|2095594_2096080_-|asparaginase
MEELLVVTTGGTIDKIYFDDKSDYQIGDPQIGMILRELGVTFRFNVIPILRKDSLHINDEDRELIRATIAAQPTRHVLVTHGTDSMVQTGKVLATIPDKTIVMTGALSPARFRGSDAEFNIGCAIGAVQSLPSGVYIAMNGRIFDPQHVRKNVAANRFESV
>NZ_CP044092.1|WP_005408180.1|2096159_2096495_-|DUF2069-domain-containing-protein
MSRPPRTVLLLALMGLAALFAGWFINDKHWLATQLVFTAPPLALAFALRLGWRKAGFWASVLALGWFSHGVMSAWSHPETRWLALIEIALALLVIFSASLPGLRARFGKRR
>NZ_CP044092.1|WP_005408181.1|2096491_2097085_-|NAD(P)H:quinone-oxidoreductase
MGEILVLYYSRGGSVARLARQIARGIGEVPGMSARLRTVPPVAAVTQTAQPPVPDDGAPYVSVQDLVECQGLLLGSPTRFGNMAAPVKHFLDGLGAEWVNGTLSGKPAGVFTSTASMHGGQESTLLSMQVPLLHHGCVIVGIPFTEPALSHTTSGGTPYGASHVAGAADDPQPTDDEAVLARALGRRVADIAQRLAR
>NZ_CP044092.1|WP_005408182.1|2097162_2098437_+|YihY-family-inner-membrane-protein
MEPLDTLNLWMERARDRARAISFGRFLWHRFLDDRLFQAAAALAYTTVFALVPLAIVVFGVLSAFPVFDRWSDQLSDYVFSNFVPNAARAAEGYLRQFSASAGQLTAAGFIALVVSLLITLNSVEETFNQIWRVGSTRPKLTRFLVYWTVLTLGAMLAAASLAVSARVFAMPLFGTQEGRWLAELALRLAPILIEFVCITLMFRVVPHHTVKWRHAVPGAILAAVILELVKWGIGAYLGSFQSYQKLYGTVAFVPILLLWIYLCWVAVLLGASLSSSMAAFRYQPVELRLPQGYEFYGLLRLLGRFHHARAKGKGLADDEILRLEPMLTDSLLQDLACNLQEIGLLRRDERGEWLLSRDLDQVSLADLYECTQLRIPVAEQHLPYRDDSLGRAALAALDDLRLPLRERLKRKVSDIYTDSGDMP
>NZ_CP044092.1|WP_133050788.1|2098433_2099003_+|TlpA-family-protein-disulfide-reductase
MTRKTPSLLPLALLLALSACKPAQEPTPASSQPPAQAPTPTAPAPVEETPAERTTAEFPTLKMKAVDGSDYDLAAHRGKWVVVNFWATWCAPCRKEMPELSALHAMRSNIEVVGLAYEDIEVPEMQSFLTKHPVTYPIVIVDPFDPPADFATPRGLPLTHLLDPQGKLAHTFLGPVTAADIEKQIAAAK
>NZ_CP044092.1|WP_005408184.1|2099578_2100361_-|polyphosphate-kinase-2
MAKLKRKDYDELLLPLQLELTAMARWVQHSGQRLLVLFEGRDTAGKGGAIQAISQHLNPRQCRVVALPKPTDREATQWYFQRYASHLPAAGEIVLMDRSWYNRAGVERVMGYCSETEYQQFLRQAPVFEQLLVDDGILLFKYWLCVDQEQQEKRFAERHLDPLKGWKLSPVDLKSRSKYSAYTEAREAMLRATHREAAPWTLVDFNDQRLGRLTLVRNLLDRLPDTRVDAPLPELPKLKGKLHREHYDVLKPIEDFPVED

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Crispr_ID: NZ_CP044092_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_11

2620593-2620663

Orphan

Consensus_repeat	Method
TGAGGTTGCCGGCCAGCGGCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044092_11

>merge|NZ_CP044092|11|2620593-2620663|CRISPRCasFinder
TGAGGTTGCCGGCCAGCGGCCGGCACTACCGTGGCGTTCACTGGCCCATGAGGTTGCCGGCCAGCGGCCGG

>NZ_CP044092|11|10|2620593-2620663|CRISPRCasFinder
TGAGGTTGCCGGCCAGCGGCCGG	CACTACCGTGGCGTTCACTGGCCCA
TGAGGTTGCCGGCCAGCGGCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_114618562.1\|2614999_2616076_+\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|240081
NZ_CP044092.1\|WP_133050745.1\|2627375_2629967_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP044092.1\|WP_005412653.1\|2617808_2618567_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP044092.1\|WP_087802900.1\|2630793_2632536_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP044092.1\|WP_005408605.1\|2623594_2625238_-\|catalase	unknown	unknown	gnl\|CDD\|163712
NZ_CP044092.1\|WP_043035636.1\|2620137_2620548_+\|DUF1801-domain-containing-protein	unknown	unknown	gnl\|CDD\|227936
NZ_CP044092.1\|WP_005408597.1\|2618721_2619123_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP044092.1\|WP_012479532.1\|2619205_2619586_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_005408595.1\|2617287_2617800_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP044092.1\|WP_049406738.1\|2622883_2623486_-\|DUF937-domain-containing-protein	unknown	unknown	gnl\|CDD\|368733
NZ_CP044092.1\|WP_150359568.1\|2644949_2645429_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_005408591.1\|2613531_2614908_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP044092.1\|WP_005408602.1\|2622188_2622428_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_005412662.1\|2630102_2630495_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240166
NZ_CP044092.1\|WP_099481557.1\|2616072_2616885_+\|aminotransferase-class-IV-family-protein	unknown	unknown	gnl\|CDD\|236438
NZ_CP044092.1\|WP_005408603.1\|2622437_2622845_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP044092.1\|WP_111189248.1\|2620665_2622126_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240543
NZ_CP044092.1\|WP_005408594.1\|2616982_2617243_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP044092.1\|WP_065183097.1\|2625418_2627176_-\|wall-associated-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_150359567.1\|2619649_2620099_+\|DUF1801-domain-containing-protein	unknown	unknown	gnl\|CDD\|227936

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_114618562.1\|2614999_2616076_+\|nitronate-monooxygenase	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	1.10228e-64
NZ_CP044092.1\|WP_133050745.1\|2627375_2629967_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP044092.1\|WP_005412653.1\|2617808_2618567_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.2203e-140
NZ_CP044092.1\|WP_087802900.1\|2630793_2632536_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.60917e-171
NZ_CP044092.1\|WP_005408605.1\|2623594_2625238_-\|catalase	gnl\|CDD\|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
NZ_CP044092.1\|WP_043035636.1\|2620137_2620548_+\|DUF1801-domain-containing-protein	gnl\|CDD\|227936	COG5649, COG5649, Uncharacterized conserved protein [Function unknown].	4.94908e-56
NZ_CP044092.1\|WP_005408597.1\|2618721_2619123_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.78011e-63
NZ_CP044092.1\|WP_005408595.1\|2617287_2617800_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	4.55657e-65
NZ_CP044092.1\|WP_049406738.1\|2622883_2623486_-\|DUF937-domain-containing-protein	gnl\|CDD\|368733	pfam06078, DUF937, Bacterial protein of unknown function (DUF937). This family consists of several hypothetical bacterial proteins of unknown function.	3.66153e-15
NZ_CP044092.1\|WP_005408591.1\|2613531_2614908_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP044092.1\|WP_099481557.1\|2616072_2616885_+\|aminotransferase-class-IV-family-protein	gnl\|CDD\|236438	PRK09266, PRK09266, hypothetical protein; Provisional.	6.68341e-117
NZ_CP044092.1\|WP_005408603.1\|2622437_2622845_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	2.24061e-26
NZ_CP044092.1\|WP_111189248.1\|2620665_2622126_-\|MATE-family-efflux-transporter	gnl\|CDD\|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	4.03152e-132
NZ_CP044092.1\|WP_005408594.1\|2616982_2617243_+\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	1.3145e-43
NZ_CP044092.1\|WP_005412662.1\|2630102_2630495_-\|hypothetical-protein	gnl\|CDD\|240166	cd05143, Barstar_SaI14_like, Barstar_SaI14_like contains sequences that are similar to SaI14, an RNAase inhibitor, which are members of the Barstar family. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. The sequences in this subfamily are mostly uncharacterized, but believed to have a similar function and role.	1.74076e-25
NZ_CP044092.1\|WP_150359567.1\|2619649_2620099_+\|DUF1801-domain-containing-protein	gnl\|CDD\|227936	COG5649, COG5649, Uncharacterized conserved protein [Function unknown].	1.98091e-50

>NZ_CP044092.1|WP_043035636.1|2620137_2620548_+|DUF1801-domain-containing-protein
MATHAPNPADAGTPAAELIDARIAELGDWRGEALARVRALIHEALPDVQETWKWRGTPVWEHNGILCTGETYKQAVKLTFANGAALADPKGLFNASLEGNTRRAIDIHEGAMPDAAAFKALMRAAATFNAAKKKKR
>NZ_CP044092.1|WP_150359567.1|2619649_2620099_+|DUF1801-domain-containing-protein
MDVPCDASKRTAPSAAPKLLSGGNPQIAKGEGDATVQAYIAAMPDWKRPIGARLDALVEQAVPGVHKAVKWNSPMYAVAAGEGWFLSFHCFTRYIKVAFFRGAALKPVPPEPSRSADTRYLHIAQDGVLDEARFLDWVRQAAALPGEHM
>NZ_CP044092.1|WP_012479532.1|2619205_2619586_+|hypothetical-protein
MNDINPRYPAVIQSALRFLDGKGLARVQSAPLLHRLLWRMGIALPPPILAGFGTNALVQGLLFGLFWTALMWLMLWQGSERPLALLLAAGLLAGALFGVVMAGLMRSLRRHRKLPEWRQFRAGQAD
>NZ_CP044092.1|WP_005408597.1|2618721_2619123_+|50S-ribosomal-protein-L19
MSKLNKSIVAEFESAQITRELPKFSQGDTVVVNVKVKEGSRERVQAYEGVVIATKNAGLNSSFTVRKISHGYGVERVFQTHSAIIDSVEVKRRGKVRAGKLYYLRGLEGKAARIKEDLAAAAAAKAARLAEKA
>NZ_CP044092.1|WP_005412653.1|2617808_2618567_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRFDVITLFPEFLAQSAGLGVVGRAQEKGLFSLHGWNPRDYAEGNYRRVDDRPFGGGPGMVMLIEPLQACLQAIRDADPTPARVIHLSPQGAPLTQAKVRELAALPRMVLLCGRYEGIDERFLEANVDEEISLGDYVLSGGELGAAVIIDAVARLQDGALNDAESAAQDSFEGDLGLLDCPHYSQPAQHPLGDVPDVLRSGNHAAIAAWRRQQSLVRTAQRRPDLLDEQALGKADRTLLEQGRQAQKQKADP
>NZ_CP044092.1|WP_005408595.1|2617287_2617800_+|ribosome-maturation-factor-RimM
MKDIERRILLGRVVGAFGVRGEIKLESWTEPRSAIFRYQPWIVRSPSGVETTIEGVRGRDSGKHLVARFPGVEDRDTVEAMRGTEIYVARSALPPPKPDEYYWVDLEGLDVKTTEGVALGQVSHLFSTGANDVVVVRGDRERMIPFVQPDFVKSVDFEANLVVVDWDPEF
>NZ_CP044092.1|WP_005408594.1|2616982_2617243_+|30S-ribosomal-protein-S16
MVKIRLTRGGAKKRPFYHIIVTDVRSARDGRNIERVGFYNPVAQGGEKRIELDLARVDHWVKNGAQPTDKVRNLIKEATKSQAAAA
>NZ_CP044092.1|WP_099481557.1|2616072_2616885_+|aminotransferase-class-IV-family-protein
MTVTCNGLPAQVEDLLPALVNYGHFTSLQVRDHAVQGLDLHLARLSQATRELFGSELDTVQVQTWMAQALQQAGLADASLRVTVYSRRFDFRNPLAAVPVDVLVAVSAPVALIAPKRVRSVVWQREMPQIKHVGTFGLFAERRAAMAEGFDDVLFVTADGDVSEGSTWNLAVHDGERLLWPQAPALRGTAEALLKRHWPDAQLTRPLALAELGSVKAAFACNASGLWALEAIDGHVFSGSQALAERGRAVLAAVPWDRLGPDPLCGAKTI
>NZ_CP044092.1|WP_114618562.1|2614999_2616076_+|nitronate-monooxygenase
MNASPILERADTFCRRFSLQLPILLAPMAGACPVPLSAALANAGSMGAMGAVLSPAADIGRWMDDFRAASNGPAQVNLWVPDPVPTRDVAAEAASRAFLTQWGPDVPASAADATPADFEEQFAALLAARPAVASTIMGVLLPRHVQQLKDAGIAWIACATTLSEARAAQDAGADAVVAQGMEAGGHRGAFDPAMAERQLVGLFALLPRLADHLQIPVIAAGGIADGRGIAAALTLGASAVQIGTAFLRTPEAAIASAWADGLAASEPEDTWPTRAFSGRLGRGLATAYVRAAAAEGAPAPRPYPVQRGLTAPMRKQAAQENRLAAMQAWAGQSAWMAPAQPAADVVRGMWSQAQALLR
>NZ_CP044092.1|WP_005408591.1|2613531_2614908_+|signal-recognition-particle-protein
MFESLTQRLSGTIERLRGRGRLTEENIREATREVRIALLEADVALPVVQALIERIKVRAVGQEVLKSLTPGQALIKVVRDELTAVMGAEASDLNLNVPAPAIILMAGLQGAGKTTTVGKLAKHLKEKRKKKVMVVSADVYRPAAIEQLKTLAEQVGVLFFPSSADQKPEAIVRAAIDDARKSFVDVLLVDTAGRLAIDEAMMAEIKALHAAVNPAETLFVVDAMTGQDAANTAKAFGDALPLTGVVLTKTDGDARGGAALSVRYITGKPIKFVGVSEKPEGLDVFHPDRIASRILDMGDVLSLVEQVEQQVDKDKAAKLAEKVAKGKKFDLNDMRDQLEQMQNMGGIGGLMDKLPGLGNIPDHLKQQVSQGKEVPRMIAIISSMTKKERRNPNLLNGSRRARIAKGSGVTPADVNKLMKQYMQMEKMMSKMAGGGMKGMLRSMKGMMGAMGGRGMPFR
>NZ_CP044092.1|WP_111189248.1|2620665_2622126_-|MATE-family-efflux-transporter
MAKAPLDLTSGPIGRNLLLFSLPILAGNIAQSLNGSVNAVWVGRFLGEAALTATANANNIMFFLIGSVFGFGMASTILIGQAIGARDIPQARRVVGTSATFFIGLSVIIAIAGWFMAHPLLAAMGTPAASLPLAEAYLQIIFLAMPTLYAFAFLTAALRGAGDSRTPFRFLMVSVALDIVLNPVLIFGMGPFPALGIAGSAWATLVAQTLSLAGLLLYMRHKRHTLWLGRADMRLFKLDLTILKALVLKGVPMGLQMVLISLSVILLMTMVNQYGTDTAAGYGASLQLWNYLQMPAMAIGAACSSMAAQNVGAQRWDRVRGTARQGVLFNFLLTGALILPLVLFDRQLLALFLPPASQALDIARHLNHVVIGSFLFFGVSFVISGVVRSTGAVIPPLLILAGSLWGVRVPFAELLQPYWGADAIWWSFPVSSLVSMLLSLAYYRWGGWRKAKMISKPSHAEELATPSEIPACPPSPVADPDAAPMR
>NZ_CP044092.1|WP_005408602.1|2622188_2622428_+|hypothetical-protein
MRQRLQVKRRLALALIGAALAACSTGDRLGDTQVRPTDRPECLVGSQRQDLSAGVPTLIGGSGCRTDPDNPRPLNKRTE
>NZ_CP044092.1|WP_005408603.1|2622437_2622845_+|RNA-binding-S4-domain-containing-protein
MTELSPLSPSVRLDIWLWAARFFKTRSLAKQAIETGKVSVAGQRPKSSRAVRVGEQLQVDRGEEHFEIQVLGLSDQRGPAPTAQQLYAESEASKARRAEQRALRIAARDGFQPPEHKPDKRARRLIRALGDIDAL
>NZ_CP044092.1|WP_049406738.1|2622883_2623486_-|DUF937-domain-containing-protein
MSLTDELLAKLQGAPLQQVSQQLGISDTQASGAISAALPVLMGALGNNASQPQGAQALLGALQNNHSGLDLGSVLGSVLGGGSGGAASDGAGILGHIFGGNQQKVETGLAQATQLDSGRTSQLLQILAPIVMAFLAQRLGGGQADAGSLSQALGQEKQQVQQQGGLAGGLLGSLLDQDGDGQLGVGDLLKIGGSLLGGKR
>NZ_CP044092.1|WP_005408605.1|2623594_2625238_-|catalase
MSQSDNNSPKCPYHTAPSPAEGAQQQRELSTTPKQKHGDDPVTPMTTAFGAPVVDNQNSKTAGPRGPLLMEDVWLLEKLANLNREIIPERRMHAKGSGAFGTFTVTHDISKYTRAKLFEKVGKQTEMFARFTTVAGERGAADAERDIRGFALKFYTEEGNWDLVGNNTPVFFLRDPRKFADLNKAVKRDPHTNLRSARNNWDFWTLLPEALLQVTVVMSDRGIPRSFRHMHGFGSHTYSFTNADSERFWVKFHFVSQQGIESLTDAQAQILVGHDRESHGRDLFAAIEKGDFPKWKLFIQVMPELEAETYRIHPFDLTKVWPKSDYPLIEVGQFELNRNPVNWYQDVEQSAFAPSNLVPGIGPSPDKMLQARLFAYSDAQRYRLGVNHHQIPVNAARCPVHSNHRDGAMRVDGNYGGLPHYEPNSYGQWQEQPQYREPPMKIRGDADFWNFREDDADYFSQPGALFRSYNQAQKDRLFANTARALGDAPDFIKQRHIDNCSKADPAYGAGVAAALKALASQPSDPFKPAQPEADFPTATPGAEDIEL
>NZ_CP044092.1|WP_065183097.1|2625418_2627176_-|wall-associated-protein
MRRTVLALLLVCGVADAQEFVSSERTYDERLRGARVAALGDDLFGDSLNRKDGTLQFSQTDVVVPTSSGMRVAFTRTTPKQKQGLDRAAAPLGASWEIDAPYMMGSYDQRRGWNAAGGGRCSGSNLSPTEWVGPSPDFNTRVIPKHTYWSGIFINLPAVGYESLLLKEAGASLPQDGATYIGTSASQWRVSCLPAIRNGTGEGFVVRTTDGTRYFFDWMAVRDQHDVLANEYYRDGNGNGTSQPYLLVPVVDVFLYATRVEDRHGNWVSYSYDGANPTRLLAIISNDGARIDIDYDAQGKIGAVRAGDRTWRYYYVDSYWGRTLNEVVLPDQSRWTFSTDRHVGAMPWTMVPPVLNPGFYMNSCAQNATGFRSEDAGDPAFNDVITMRHPSGAQGVFSLRQLIHGSDNTPGSCGIIGTSSSNFGFGSFGIPNAYMAKSLVSKTLSGPGIQPASWTYTYSPHWSFTGGCTSNCVSTTWENRPDGVQAEYVFGNDYTANIGDLQIERLRRAGLVVQETRYVKAAASGPYPARYGTQLAPRGNPLTTQIRPMQDTQLRRDGMLHRRYVDAFDGLARPVRIVELSTAGP
>NZ_CP044092.1|WP_133050745.1|2627375_2629967_-|DNA-mismatch-repair-protein-MutS
MSKDKSAEHTPLMKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAGVPVHAYEGYLARLVALGESVAICEQIGDPALAKGLVERKVVRIVTPGTVTDEALLDERRDTLLMALSRSKQGYGLAWADLAGGRFLVNEVETDDALEAELARLEPAELLVPDEENWPEFLRQRTGVRRRAPWLFDADSGRRQLLNFFKLHDLSGFGIDDKPRATAAAGALLGYVEETQKQRLPHLTSIAMETAGEAIAMNAATRRHLELDTRVDGDTRNTLLGVLDSTVTPMGGRLLRRWLHRPLRLREVLVQRHHAVETLIDRGADADIREQFRRLGDLERILTRVALRSARPRDFSTLRDGLGLLPAVREVLAPLDSPRLQALHAALGEHDACAQLLASAIADMPPLKLSDGGVLADGFDEELDELRRLSTHADQFLVDLELRERESSGIPTLKVGYNRVHGYYIEISKGQSDRAPVHYTRRQTLTNAERYITEELKAFEDKVLSARDRSLSREKYLYEQLLDTLGGQLEPLKQCAAALSELDVLAAFAERAQALDWARPELQAEPCLKIERGRHPVVEAVREQPFEPNDLDLHPDRRMLVITGPNMGGKSTYMRQNALIVLLAHIGSFVPASRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATAHSLVLMDEIGRGTSTYDGLALADAVARHLAYQNRCYTLFATHYFELTALADEQHEGGRSGIANVHLDAVEHGEALVFMHAVKDGPANRSFGLQVAALAGLPRATVAQARRRLAELEQRGAESHAAEMAPQALDAPQQFGLFAAPSSKAQEALAAIDPDELTPKQALEALYRLKTLL
>NZ_CP044092.1|WP_005412662.1|2630102_2630495_-|hypothetical-protein
MTIVLQIEGAAINDIPSLYAEINRVFMAGENWQLGPSLDALDDLLHGDYGVLAGHDRATVIWGDIEHSRAALGRTTTCQWLQSKLEAPGTFNRRTIALQLDALQRGQGQTYFGIVMEIFASHRQITLVPA
>NZ_CP044092.1|WP_087802900.1|2630793_2632536_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MRSGKKQARQACRGGGWVVLLGMTFGVAAQQAGDPAAQELLRQQERERVLREQQEQRPDVRLERNAQKEGDRLPAQERPCVRIDRIVLEGEDSQRFGWALAAADPVDDPATGRCLGTEGINVVMKRVQTAIIARGYVTTRVLSAPQDLNQGTLTLSVVPGRFREAVFSDPQGRHPALANALPIRSGGLLNLRDIEQGLENLQRVPTVSADIKIAPADGEGAAPGQSDLQIDWTQRSPVRASVTLDDAGSRGTGKLQANATLSLDNPLGLNELFYISAGRGVFNGRGKDTNSWTAHYDVPYGYWLFGATASAYDYSQNVVGAFESYDYSGRSQNAEARVDRLLLRNAKVKFSAYARGWQRESKNYIDDTEIEVQRRRTAGWELGLTHKQFIGNATLDASVAYRRGTGAFHALRSPEEKAQQWDPTLPLEGTSRMKLITADAQFSVPFQLGRQRLRYTAAWRAQWNRTPLSPQDRFAIGGRYTVRGFDGESSLSGERGWSLRNDLSLGIGGGQEFYVAADYGRIGGPSAQWQSGRDLAGMALGLRGGWQQFSWDGFVGSALHKPAHFPTDYTTFGFSLAWRY
>NZ_CP044092.1|WP_150359568.1|2644949_2645429_+|hypothetical-protein
MGTRYVVVLVAEGVIPERESLVCQAWGEVPISYFQDHESLNECSFIDLKVNKWEINAEWSRKSEVEPWIRIEILRGGAVAEYLVAQGLSLVVEGGALLSIEMDDGGGEIDEILLVNLVSVFMPGNRVFQWRGGLSEIDGEYISRFPAREEVLERLRHCR

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Crispr_ID: NZ_CP044092_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_12

3613109-3613216

Orphan

Consensus_repeat	Method
CATCCACGCAGGGCGTGGATCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044092_12

>merge|NZ_CP044092|12|3613109-3613216|CRISPRCasFinder
CATCCACGCAGGGCGTGGATCTACCGCAACCCGCTTTGGTGGGGGCCGACCGTTGGTCGGCACGGATGTCTGTGCCTCTCGATCATCCACGCATGGCGTGGATCTACC

>NZ_CP044092|12|11|3613109-3613216|CRISPRCasFinder
CATCCACGCAGGGCGTGGATCTACC	GCAACCCGCTTTGGTGGGGGCCGACCGTTGGTCGGCACGGATGTCTGTGCCTCTCGAT
CATCCACGCATGGCGTGGATCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_005409576.1\|3600617_3601013_-\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183628
NZ_CP044092.1\|WP_005409579.1\|3603095_3603401_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_CP044092.1\|WP_005413275.1\|3602363_3603020_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|183625
NZ_CP044092.1\|WP_005413279.1\|3615523_3616138_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690
NZ_CP044092.1\|WP_005409592.1\|3618319_3618646_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP044092.1\|WP_005409580.1\|3603397_3603736_+\|flagellar-protein-FlgN	unknown	unknown	unknown
NZ_CP044092.1\|WP_005409577.1\|3601150_3602095_-\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|381151
NZ_CP044092.1\|WP_111193547.1\|3618780_3619593_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	unknown	unknown	gnl\|CDD\|226100
NZ_CP044092.1\|WP_005409581.1\|3603827_3605045_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340419
NZ_CP044092.1\|WP_005409590.1\|3617273_3617735_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_CP044092.1\|WP_005413280.1\|3616134_3617277_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP044092.1\|WP_111193546.1\|3614169_3615360_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP044092.1\|WP_005409591.1\|3617736_3618207_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_032966709.1\|3622095_3622479_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_005409582.1\|3606298_3608071_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP044092.1\|WP_005409575.1\|3600206_3600614_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|183634
NZ_CP044092.1\|WP_150359805.1\|3608075_3610178_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP044092.1\|WP_065183785.1\|3613855_3614071_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044092.1\|WP_005409594.1\|3619731_3622017_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP044092.1\|WP_005409584.1\|3610309_3613069_+\|phosphodiesterase	unknown	unknown	gnl\|CDD\|236645

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_005409576.1\|3600617_3601013_-\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183628	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional.	8.61259e-79
NZ_CP044092.1\|WP_005409579.1\|3603095_3603401_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	1.67856e-14
NZ_CP044092.1\|WP_005413275.1\|3602363_3603020_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|183625	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA.	2.43507e-107
NZ_CP044092.1\|WP_005409592.1\|3618319_3618646_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.26539e-44
NZ_CP044092.1\|WP_005413279.1\|3615523_3616138_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	2.48163e-86
NZ_CP044092.1\|WP_005409577.1\|3601150_3602095_-\|chemotaxis-protein-CheV	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.16931e-37
NZ_CP044092.1\|WP_111193547.1\|3618780_3619593_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	gnl\|CDD\|226100	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms].	3.90568e-76
NZ_CP044092.1\|WP_005409581.1\|3603827_3605045_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|340419	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS. This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli AtoS, an HK of the AtoS-AtoC TCS. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have accessory domains such as HAMP or PAS sensor domains or CBS-pair domains.	1.6216e-52
NZ_CP044092.1\|WP_005409590.1\|3617273_3617735_-\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.7154e-70
NZ_CP044092.1\|WP_005413280.1\|3616134_3617277_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP044092.1\|WP_111193546.1\|3614169_3615360_-\|chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	1.00686e-30
NZ_CP044092.1\|WP_005409582.1\|3606298_3608071_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	5.55568e-97
NZ_CP044092.1\|WP_005409575.1\|3600206_3600614_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|183634	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional.	1.2905e-80
NZ_CP044092.1\|WP_150359805.1\|3608075_3610178_-\|PAS-domain-S-box-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.92943e-43
NZ_CP044092.1\|WP_005409594.1\|3619731_3622017_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP044092.1\|WP_005409584.1\|3610309_3613069_+\|phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.38647e-105

>NZ_CP044092.1|WP_005409584.1|3610309_3613069_+|phosphodiesterase
MDQGIIASLLQHPLASALVIVDRTGRPLAANPAAREHGLPATVAAYAPMLEDLRLMAADGGIVACTLPGGPHGHYDGHLRAVHDGAGNLLAFTLSIPEPVPLGGGGRWELALDSAGHSLWDWDIPSDRVVRTPAVGDETATEMLARVHGEDIAQVRAALEEHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQLEGLLQEQQLHLSEAQRIASMGSWSFDPNSGHFWWSPELRSMLALEQGAVPGQRRWLKQLHPRSRGALRAAWRRLWRDGRAANLELELTRGNEPSQHLRLWMQPLLDMDGQPKRLLGQVQNITEQHQTDALIRWRTELLNRVSALGRIGGCEIEVKTRHMQWTEECYRIHGLRKEPITLDQALALYTEDSRNAFEAALARIANGGLPEQLDLCFYRQSGLRVWVQVLIELDRRDGLPPRFVVLFRDITREREANERIELLAHYDLLTGLPNRVLLGEQTAEAIEEARDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRLHQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVGIAMLGDAQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIEREEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNEACRQATAWDRAGLRFDRIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESALIRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGTAEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQPQPVSLRTDASGEVMLVR
>NZ_CP044092.1|WP_150359805.1|3608075_3610178_-|PAS-domain-S-box-protein
MPAEPTGTAFVPDPRMAQALSRDRRRVVLSYLVMALAWMIASDSAVQALVPDPQQAAMWQSVKGSFFALASAGLLYLLLRPLAEHVLHTHARQQASELRLRQMFEGNPGPILVYDLDTLAILDANPAACIAFGWERDELLEQTIDALWPPGQDQALQTKLEAIREAPEELCILRTQLQLRDGSLRQMELRSNAISYDGHNARLLIAIDRTAEDLAQLRRDQALARVEEAHELARIGAWELDPSTGMGRYSNQVYRLLGRRPPEARRWHRFDELLVPADPATATQTEQLLADLCSGDPVQVDVLLPLLSMDGRALMVHLRAASGVDESGRSRVLGTLQDVTEREQSRRLLREREEQFRELVRVLPDGVVILSDEHVLYTNAWAASLFGYGSHTLLGEPLSALVAAGDLARVRGQLRAGQPHLGPGHSSVVAMQRADGRSFHAGLAVGEVRYGGRDCKLLIVRDLSDSERTRSALETSNRELQAMAGRLFSLQEDERRAISRDLHDDIGQAITAIKLSAHAAQDEHDPQRRAEDLAQIVSLADTTVAKLRDISTLLRPPQLDALGLEAALSWQARVLFRSSQVELLAEIEPLPHRPDNSIEQACFRIAQESLTNVLRHARASQVHLQLRDIGKRSLHLQIRDDGEGFDPDGPRGLGLIVMRERAQSVGGHVRIESAHGEGTLIDVHLPYQAASMAAVESPEY
>NZ_CP044092.1|WP_005409582.1|3606298_3608071_-|EAL-domain-containing-protein
MWNPNQPPVSIDDAPDRLGAGNPELQAMVAEAASGGTALMLMHVDIDHFASVNENMSAEVGDQALVLVAQRLQSYLRGRGKLWRHGSDEFLIAVPRNADVPLPEDFAEEIRQQMELPLSVLPYTLFMTGKLGVSLCPEHASNASRLLDHAEDALYQAAREGGNAVRIHAVDTPPSAHSESIIARQIVDAIPNGELKLRYQPLVSARDGHVVGMEALLRWQSPTLGMLVPERFMRTAERLGIIVQIGTWVLEGALKQARLWRDQGFDDFTIAVNVSTLQLLRPNFFAEVMGLIQAAGVPAQMLTLEINESALTNNVNFVHETLANLRNEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAMGHQLGMTVIANGVESQAQLGFLRRNDCDVFQGYLFGEPMSADAAGMTLRRRYLRPEAFAETRPDRTLLLLDDEENVLRSLVRLFRRDGYRILAAGNVRDAFDLLAINDVQVILSDQRMSDMSGTEFLGRVKMLYPDTIRLVLSGYTDLNTVTDAINRGAIYRFLTKPWNDDELRKHIHQAFRTYEEQRRSNAGPAPAESGDGGEDRPLR
>NZ_CP044092.1|WP_005409581.1|3603827_3605045_+|two-component-sensor-histidine-kinase
MSAANALVTAPLPPQPVLQALLERLREGLLLFTEDGQVALANPAAQNLLAGGEDGALPPQRLRELLPPDALEQARQHGHWNGSLPLGEGVVIAHLYHHGPVGQGHFLALFRHIEGQEDYERELQQRHAELRQAYLRLNGTQEKLLQSEKMASIGQLAAGVAHEINNPIGYVHSNLGSLQEYLRSLFTVIEAYERALRAPDPKALIPEIDDIRDRLDIDFISRDLPQLMAESREGIERVTRIVRDLKDFSYSGRDESWKLVDLHAGLESTINIIWNELKYKVTLVREFGQLPLVECLPSELNQVYMNLLLNAGHAIAERGTITVRTGVDGDQVWVEFEDTGGGISPELRQRIFDPFFTTKPVGSGTGLGLSISYSIINKHHGRIDLDSTPGVGSRFRVVLPVKQPR
>NZ_CP044092.1|WP_005409580.1|3603397_3603736_+|flagellar-protein-FlgN
MTAAMSEPLQRLAQALDVERQALVEHDVHALIRATGAKLEALRALEGAPPVGQGEQLQELAERNRANGVLLSRRRREVNWALRQLGRTEDASAYDAKGQSHTVTARRPLAVA
>NZ_CP044092.1|WP_005409579.1|3603095_3603401_+|flagellar-biosynthesis-anti-sigma-factor-FlgM
MSQKIDGNLQVPQALRSVTTPANKPGVSTDAAARPVEAADSLRLTGEATNLQAIERELTTAPAIDAQRVAAVRESLQNGTYKINPDAIASRMLDLDQQLHG
>NZ_CP044092.1|WP_005413275.1|3602363_3603020_+|flagellar-basal-body-P-ring-formation-protein-FlgA
MRRVTSLLAIALAVASPWATAADWQPVASIRAAALTTLPAGSEGEAQVADALRLPKCGGALQVQPTANTTVEVSCPDAGGWRLFVPVKVRRNQTVLVLNRGIGTGETLTAADITTAQRDAARIAGAVLADPNAAIGRIARRPLQAGALLSNNDLVVQRLIKRGDNVALVSRRGSVEVRIAGRAMGDAGENERVSVENLSSRRIVQGTVDAAGDVIVAR
>NZ_CP044092.1|WP_005409577.1|3601150_3602095_-|chemotaxis-protein-CheV
MSHDLLNRIDQRTRLAGHNRLALLLFRLGGRQLFGVNVFKVQEVLRRPELFQVPGLPSQFSGVADVRGRSVPVLDLGLAIGHPEREPEADTSPGYLVVTEFNRSIQGFLVSGVERIVNIAVEDIHPPPELGAESSYLTAVTRFQGELIQVIDVESVLADIAQVRGEAVLDPAMAMPSDGPQLQVLVVDDSRVARQQIRSVLDQLGVGATLLSDGKQALDHLLQIHASGENPAERYAMVISDIEMPAMDGYTLTTEIRRHPGLAGLYVLLHTSLSGVFNNAMVERVGANAFVAKYSPHELADFVLDRLRKVALAA
>NZ_CP044092.1|WP_005409576.1|3600617_3601013_-|flagellar-basal-body-rod-protein-FlgB
MRNLITDYLGVHAQAMPLREQRMKLIASNLGNADTPGYKAQDLDFDAALRHAQGQDANGLMATTHEQHYEISSGLNPFQIAREGVQPSLDGNTVDPDAERAAYGRAALEYRASLSFVESKVRSMLTAITGQ
>NZ_CP044092.1|WP_005409575.1|3600206_3600614_-|flagellar-basal-body-rod-protein-FlgC
MSNLPIFDIAGSALQAQSVRMSTIASNLSNADTVAGSADAVYKPLEPIFQAVTSKNDPNITSVKVKEITQSDAAPIKRYEPGHPLADGDGYIYQPDVDPVAQMVNLISTSRNYQAGVEMLTTAKELALATLTMGR
>NZ_CP044092.1|WP_065183785.1|3613855_3614071_-|hypothetical-protein
MTLIRALPSLTDTERPRNASVREQLQQLEDVAREEIRELQQLADARPAPSRVDEALLGLAWDLGLDGEALK
>NZ_CP044092.1|WP_111193546.1|3614169_3615360_-|chemotaxis-protein
MYSRIFIRLAAPLALTLLLPFAIGFEWPAALRWAILTTMTLSWLGFAWWTTRAQAHRSPEHARVLREQDQLLTELRNFVGNEIEGSRSEVERARDLIRQAVSSLGGSFDAMNRKSRQQSQALSRIVDRAGDEGNAGLDVARFAQHASHRMEQLVEALEQVSGQSSTTVQHIDQMAQHLDGIFALLEDVKSIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLSERSTTFNEQIRKLAHSSKDAIAKVRETVSHMASRDMDRSREARQEAAAMLDNVAQINASLGDGMREVSECARSIDGSVAEAVRALQFEDIATQALGGVHTHLDRLTAINREAVALQELLHRNGGVFDEEIATALQRTGSRLRELRSEWERPPHKPVAQQSMGAGTVELF
>NZ_CP044092.1|WP_005413279.1|3615523_3616138_-|high-frequency-lysogenization-protein-HflD
MSFTVDDRVLALAGIAQALQQVRRIADTGHSDAAAVRTAVDSVFRVDASSPQEVFGDRHALKSGLRLLHNYFRSQGQDPILPKLALSVLQLERRFVQDGATVNKVASGIERAQRQATELGDSGHPDVLANLGGLYADTISHLKPRVMVQGNPHYLGQAGVVAEIRALLLAAVRAAVLWRQLGGSYWDFLFSRKAMIEAVDRQLA
>NZ_CP044092.1|WP_005413280.1|3616134_3617277_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSTPRVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWADDGSGDCRAEDDRRDAVAVCGLLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPARPGQILDPADGSVIAEHPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIAGSPPARRFECTAQTRYRQPDEPCTVQVLDDGSVLVTFARPQRAVTPGQSLVLYDGDVCLGGAVIAATDAPLEQRLRTTPSPFEVIAA
>NZ_CP044092.1|WP_005409590.1|3617273_3617735_-|NUDIX-hydrolase
MNATPDPRWAPHATVATVVVDGGRVLLVEETIDGRQVLNQPAGHLEPGESLAEAALRETREETGWTVQLTHFIGCYQWTAGDGTAFLRFCYAARPVSHDPAQPLDTGIDRALWLTPAELQAAGERQRSPLVWQVVADYLGGQRHPLSLVREVA
>NZ_CP044092.1|WP_005409591.1|3617736_3618207_-|hypothetical-protein
MKRTLLPALLIALAATGSAAAADADKAVARHLDKLGYTYEVDEDGDYRMVFDVEGDRTQMVYVRSSVEDFGTHNIREIWSPAYNAKTKQFPVAVANRLLEDSQDAKMGGWVKQDTTAMFVVKIDADATADQLSDAIDAAIRTADAMELELTKKDEF
>NZ_CP044092.1|WP_005409592.1|3618319_3618646_+|ATP-dependent-Clp-protease-adapter-ClpS
MPHESSPDSQHEHGVAVEAARPEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKATQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYSRMNQHPLLCTMEKA
>NZ_CP044092.1|WP_111193547.1|3618780_3619593_-|APH(6)-family-putative-aminoglycoside-O-phosphotransferase
MSEPYLSRWRLRRDGPALRTPHARLWPVLTAAGEPAMLKISSETEEQNSHRLLRWWNGDGAARLLAHEGPAILIERARGDSLRQRSIEGDDDACTAILCQVLQQLHRPRSAPPAELVCLRRWFADLLQPRAALPPLLEQCRSLAVALLEEEQEIRPLHGDLHHDNVLDFGARGWLAIDPKRLLGDRAFDYTTMFSNPDLCGPGIHVATRPERFAARLQQVSALAGLERARLLHWIAASAGLSAVWFRDDGDPAEVDEAVARMALEALAEA
>NZ_CP044092.1|WP_005409594.1|3619731_3622017_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MFSKDLEHTIGQCYKRAREARHEFMTVEHLLLALLDNPSAQAVLKACGADADRLRQELEQAIEASVSRLAEDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYYLNQQDVTRLDVVNYLSHGIAKLGDEGEQSSSSPEGESRMEGGEGEPKGDALTEFASNLNDQARAGRIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLARRIIEGSVPDVLADAVIYSLDLGALVAGTKYRGDFEKRLKSVLTALKKVPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCIGSTTFQEYRGIFEKDRALARRFQKIDIVEPTVGETYEILQGLKSKYELHHGVTYSDEALQAAVDLSVKHIGDRLLPDKAIDVIDEAGARQRLLPEEQRKELIDVEEVEAIVAKMARIPAKQVSATDKDVLQHLERNLKMVIFGQDPAIETLSSAIKLARSGLGNPEKPIGNFLFAGPTGVGKTEVTKQLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDEIEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVVLVMTTNAGAAQASRRSIGFTKQDHATDAMETIRRSFTPEFRNRLDAVVQFQALGFEHILRVVDKFLIELEMLLQDKHVSLSATPTARDWLAHHGFDPLMGARPMARVIQDKIKRPLADELLFGKLVNGGKVSIDVRDDELVVETQAEPERLLPVTVE
>NZ_CP044092.1|WP_032966709.1|3622095_3622479_-|hypothetical-protein
MNALLPHVLLPAVLLVSLPLAAFAAEPSKPSNASECIALGANRDIRPSSTEREVLLRDGDNHYRVHLQKRCLGAAASASYVFFTPSTPERICGDARSTLKTDSNHCTVTRIEPIDAATFRRLAQQGR

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Crispr_ID: NZ_CP044092_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_13

4420410-4420634

Orphan

Consensus_repeat	Method
GGCTTGGCTGCAGCCTTCTTCACC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP044092_13

>merge|NZ_CP044092|13|4420410-4420634|CRISPRCasFinder
GGCTTGGCCGCAGCGACCTTCTTTGCTGCGGGCTTGACGACCGGCTTGGCTGCAGCCTTCTTCACCACCGCCTTCGGCGCCGGCTTGGTTGCTGTCTTCTTCGCCACTGGCTTGGCGGCAGCCTTCTTCACCGGCGCAGCCTTGCTGGCGGCCTTCTTCACCACCGGCGCCTTCTTGCTGGCAGCGGCAGGCTTGGCCTTGGCGGGCGCAGCAGCCTTCTTCGCC

>NZ_CP044092|13|12|4420410-4420634|CRISPRCasFinder
GGCTTGGCCGCAGCGACCTTCTTT	GCTGCGGGCTTGACGACC
GGCTTGGCTGCAGCCTTCTTCACC	ACCGCCTTCGGCGCC
GGCTTGGTTGCTGTCTTCTTCGCC	ACTGGCTTGGCGGCAGCCTTCTTCACCGGCGCA
GCCTTGCTGGCGGCCTTCTTCACC	ACCGGCGCCTTCTTGCTGGCAGCGGCAGGCTTGGCCTTG
GCGGGCGCAGCAGCCTTCTTCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_005410381.1\|4427350_4427917_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NZ_CP044092.1\|WP_005410372.1\|4417530_4417983_+\|SufE-family-protein	unknown	unknown	gnl\|CDD\|376883
NZ_CP044092.1\|WP_005414013.1\|4416099_4417476_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP044092.1\|WP_005410378.1\|4424372_4425068_-\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237311
NZ_CP044092.1\|WP_049418141.1\|4409487_4410090_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP044092.1\|WP_005410369.1\|4414003_4415014_-\|N-acetylornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235304
NZ_CP044092.1\|WP_024958440.1\|4415348_4415912_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183072
NZ_CP044092.1\|WP_133050396.1\|4428013_4429054_+\|EF-P-beta-lysylation-protein-EpmB	unknown	unknown	gnl\|CDD\|163533
NZ_CP044092.1\|WP_005410367.1\|4411447_4412536_-\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|181544
NZ_CP044092.1\|WP_150359967.1\|4408537_4409491_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|273832
NZ_CP044092.1\|WP_005410366.1\|4410093_4411422_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|235306
NZ_CP044092.1\|WP_005410379.1\|4425064_4425781_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_CP044092.1\|WP_087944437.1\|4422642_4423551_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP044092.1\|WP_012480835.1\|4421356_4422703_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|181716
NZ_CP044092.1\|WP_133050398.1\|4423656_4424361_-\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NZ_CP044092.1\|WP_005414014.1\|4417979_4419227_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP044092.1\|WP_005410383.1\|4429119_4431246_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP044092.1\|WP_005414009.1\|4412687_4413884_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235305
NZ_CP044092.1\|WP_005410380.1\|4425806_4427150_-\|TRZ/ATZ-family-hydrolase	unknown	unknown	gnl\|CDD\|236366
NZ_CP044092.1\|WP_005414016.1\|4421100_4421355_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|178815

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_005410381.1\|4427350_4427917_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	2.00633e-99
NZ_CP044092.1\|WP_005410372.1\|4417530_4417983_+\|SufE-family-protein	gnl\|CDD\|376883	pfam02657, SufE, Fe-S metabolism associated domain. This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export).	5.69703e-59
NZ_CP044092.1\|WP_005414013.1\|4416099_4417476_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP044092.1\|WP_005410378.1\|4424372_4425068_-\|phosphoglycolate-phosphatase	gnl\|CDD\|237311	PRK13226, PRK13226, phosphoglycolate phosphatase; Provisional.	1.0871e-143
NZ_CP044092.1\|WP_049418141.1\|4409487_4410090_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.3614e-22
NZ_CP044092.1\|WP_005410369.1\|4414003_4415014_-\|N-acetylornithine-carbamoyltransferase	gnl\|CDD\|235304	PRK04523, PRK04523, N-acetylornithine carbamoyltransferase; Reviewed.	0
NZ_CP044092.1\|WP_024958440.1\|4415348_4415912_-\|hypothetical-protein	gnl\|CDD\|183072	PRK11280, PRK11280, hypothetical protein; Provisional.	0.0038588
NZ_CP044092.1\|WP_133050396.1\|4428013_4429054_+\|EF-P-beta-lysylation-protein-EpmB	gnl\|CDD\|163533	TIGR03821, EFP_modif_epmB, EF-P beta-lysylation protein EpmB. Members of this radical SAM protein subfamily, including yjeK in E. coli, form a distinctive clade, homologous to lysine-2,3-aminomutase of Bacillus, Clostridium, and methanogenic archaea. Members of this family are found in E. coli, Buchnera, Yersinia, etc. The gene symbol is now reassigned as EpmB (Elongation factor P Modification B). [Protein fate, Protein modification and repair].	3.32841e-169
NZ_CP044092.1\|WP_005410367.1\|4411447_4412536_-\|acetylornithine-deacetylase	gnl\|CDD\|181544	PRK08737, PRK08737, acetylornithine deacetylase; Provisional.	0
NZ_CP044092.1\|WP_150359967.1\|4408537_4409491_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|273832	TIGR01850, N-acetyl-gamma-glutamyl-phosphate_reductase, N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. [Amino acid biosynthesis, Glutamate family].	2.68263e-126
NZ_CP044092.1\|WP_005410366.1\|4410093_4411422_-\|acetylglutamate-kinase	gnl\|CDD\|235306	PRK04531, PRK04531, acetylglutamate kinase; Provisional.	0
NZ_CP044092.1\|WP_005410379.1\|4425064_4425781_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	8.61627e-147
NZ_CP044092.1\|WP_087944437.1\|4422642_4423551_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	4.18201e-38
NZ_CP044092.1\|WP_012480835.1\|4421356_4422703_+\|dihydroorotase	gnl\|CDD\|181716	PRK09236, PRK09236, dihydroorotase; Reviewed.	0
NZ_CP044092.1\|WP_133050398.1\|4423656_4424361_-\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	9.47707e-14
NZ_CP044092.1\|WP_005414014.1\|4417979_4419227_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.5442e-62
NZ_CP044092.1\|WP_005410383.1\|4429119_4431246_-\|GGDEF-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	7.34239e-104
NZ_CP044092.1\|WP_005414009.1\|4412687_4413884_-\|argininosuccinate-synthase	gnl\|CDD\|235305	PRK04527, PRK04527, argininosuccinate synthase; Provisional.	0
NZ_CP044092.1\|WP_005410380.1\|4425806_4427150_-\|TRZ/ATZ-family-hydrolase	gnl\|CDD\|236366	PRK09045, PRK09045, TRZ/ATZ family hydrolase.	0
NZ_CP044092.1\|WP_005414016.1\|4421100_4421355_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|178815	PRK00041, PRK00041, hypothetical protein; Validated.	4.49521e-41

>NZ_CP044092.1|WP_005414014.1|4417979_4419227_+|MFS-transporter
MSEPATAEDTALGLLSRPGFAKLLAYRIFAMLSYQVVAVTVGWHIYEVTRNPFSLGLVGLAEVLPFFCVAPFAGYLVDHLPRRRLGMVACSGLIATALVLTGVATGWLPFEGVWPIYAAIALTGMVRAFLSPIYNALFARVLARDQFARGAGLGAVVFQAGMVAGPALGGVLVGFGGKGLSYAVATAFALVAMACLATLKVEEPVHTGPAAPIFKSIAEGARFVVGNRIMVGAMALDMFSVLLGGVVAMLPAFLHEILHHGPEGLGILRAMPALGSVCVGLWLARHPLHRNAGRVLLFAVAGFGLCVIGFGLSQHFWLSALILLFYGAFDGVSVVIRSTILQLATPEEMRGRVSSINGIFISSSNELGAFYAGTMARLLGLVPAVVLGGFAVLSVAGITAWKNPTLRKLNLRDLQ
>NZ_CP044092.1|WP_005410372.1|4417530_4417983_+|SufE-family-protein
MTDSPFPLEPTAAEAQTAIAEEFGFFGDWSERYQYLIDLGRKLPAFPDEWKTEEHRLLGCQSMVWIVPEGNAQSLRFHAISDSAIVSGLIFLALRVYSGRSAQEILDTEPSYIQDIGLARHLSPTRSNGVAAMLAFIRETAQAQLQRDPS
>NZ_CP044092.1|WP_005414013.1|4416099_4417476_+|cysteine--tRNA-ligase
MTLRLHNNLTRQLEPFTPLDPACPTLYVCGPTVYNYVHIGNARGPVVFGVLADLLRRRFGGLRYARNITDVDDKINTAAREQGVPISTITDRFAAAYREDMAALGVVPPDIEPEVTAHMPQIITMIEQLIANGHAYAAEGHVLFAVASFDGYGKLSRRDPEEMLAGARVDVAPYKRDPGDFVLWKPSSDDLPGWESPWGRGRPGWHIECSAMAAAHLGETIDIHAGGVDLQFPHHENEIAQSECAHGGRIFARYWLHNGMLNFGGAKMSKSLGNIERVHDLVRQHPPEALRLALLSAHYRQPLDWSDGLIEQSVRTLDRLYGTLRELASIEASAVIPASVEATLDDDLNTPQALAEVARIAADARRATDPAEQARLKGELLGAGLALGLLQADPAQWFGTAAGDGGDDARIQGLIDERAAAKKARDFARSDAIRDQLAAEGIVLEDTPQGVRWSRKRG
>NZ_CP044092.1|WP_024958440.1|4415348_4415912_-|hypothetical-protein
MKSTALLTLACLSATAAVAQAQEAEPRNRVVIVENVKFDYAQVLNVEPVFQTLRATRTEEHCEPISTRTLAPVNVTGEEPVEDKGRISRFWDSVRSMFKRSDEEVSEETAAETPAPAPANNGPMLTRDCRIVPVGREFRRPIAYDVDYVYKGTKYRSRLPEDPGNRLKIRVSITPWVGPEQGAAGNP
>NZ_CP044092.1|WP_005410369.1|4414003_4415014_-|N-acetylornithine-carbamoyltransferase
MSPKHFLNTQDWSRSDLDALLTQAALFKRNKLGDQLKGKSIALVFFNPSMRTRTSFELGAFQLGAHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVAKVLGRYCDIIAVRAFPKFIDWAYDRQDIVLNSFAKYSPVPVINMETITHPCQELAHVMALQEHFGTQDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTADYILDDRYMGWAEQNVAESGGSLKISHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQFKHFIVDERKMALTNNGVFSHCLPLRRNVKATDAVMDSPQCIAINEAENRLHVQKAIMAAVAGR
>NZ_CP044092.1|WP_005414009.1|4412687_4413884_-|argininosuccinate-synthase
MSNKDVVLAFSGGLDTSFCVPYLQERGYNVHTVFADTGGVDDEERDFIEKRAAELGVASHVTVNGGPAIWEGFVKPFVWAGEGYQGQYPLLVSDRYLIVDAALKRAAELGTNIIAHGCTGMGNDQVRFDLAVKALGDYQIIAPIREIQKEHTQTRAYEQKYLEERGFGVRAKQQAYTINENLLGLTMSGGEIDRWEAPGEGARGWCAPRSEWPEQALTVTLKFVEGEAVELNGKALPGDQILAQLNKLFAPYGVGRGVYTGDTVIGLKGRIVFEAPGLVSLLAAHRALEDAVLTKQQNRFKPDVARKWVELVYEGFYHDPLKTDIEAFLKSSQAKVNGEVVLETRGGRVDAVAVKSPHLLNTKGATYAQSADWGVEEAEGFIKLFGMSSTVYAQVNRG
>NZ_CP044092.1|WP_005410367.1|4411447_4412536_-|acetylornithine-deacetylase
MLEQTLDHLQALVSFDTRNPPRAITTGGIFDYLRANLPGFNVEVIDHGAGAVSLYAVRGTPKYLFNVHLDTVPDSPHWSADPHVMRRLDDRVVGLGVCDIKGAAAALVAAANASDGDAAFLFSSDEEANDPRCIAAFLARGIPYEAVLVAEPTMSEAVLAHRGISSVLMQFAGRAGHASGKQDAAASALHQAMRWGNRALDHVESLASARFGGLTGLRFNIGRVEGGIKANMIAPAAEVRFGFRPLPSMNIDALLATFAGFAEPEAAVFTETFRGPSLPAGDIAEAENRRLLARDVADALELPIGNAVDFWTEASLFSAGGYTTLVFGPGDIAQAHTADEFVTLEQLQRYTDAVHRIIAAGA
>NZ_CP044092.1|WP_005410366.1|4410093_4411422_-|acetylglutamate-kinase
MSPALQPHRQTRQTIVRLLSSMASAKEISQYLKRFSQLDAKRFAVVKVGGAVLRDDLDALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNGLRVTSPEALAIVRRVFQQSNLRLVEALQQNGARATSITGGVFEAEYLDVDTYGLVGEVKKVNLAPIEASLRAGSIPVITSLGETAGGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDEAGNVIDSINLSTEYDHLIAQPWIHGGMKVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRKGEKVLRATAWNELDLPRLKGLIESSFGRALVPDYFEKTKLLRAYVSENYRTAVILTDEAEGVYLDKFAVLDDAQGEGLGRAVWNVMLEETPQLFWRSRHGNPINHFYYAESDGCYKQDHWKVFWFGADGIDRIKTYVDHCAQRTPSLQG
>NZ_CP044092.1|WP_049418141.1|4409487_4410090_-|GNAT-family-N-acetyltransferase
MSNLDAWNTVPTLRGQHVTLQPLQMEHVPGLRDALEGSGLDQLWYTQVPSPEQAETYVRAALQAQSEGKVLPFVIRDAAGGIVGSTRFYDMDAGVPKLSLGYTWYAPRVQRTGANTEAKLLLLQHAFETLGCISVVLETSWFNATSRTAIARLGAKQDGVLRNHKRHADGTPRDTVIFSIIDAEWQGVKRHLQYRLDSHA
>NZ_CP044092.1|WP_150359967.1|4408537_4409491_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MNDSTFTLGIVGARGHTGAELIKLVAAHPRLELAFVSSRERAGQRLSDHHPEFQGDLQYENLDADAVAAKGVDAVILALPNGLAAPFVAALEAAKPDTVIVDLSADYRFDNSWYYGLPELTRGRYNGQKHISNPGCYATAMQLAVHPLLDLLAGPPQCFGVSGYSGAGTTPSDKNNVELLADNLMPYALTNHVHEREVSVQLGVAVEFMPHVAPHFQGITLTANLWLNRVQTREQIVERFQQAYAGEPLIDVVDEAPWVSRIAGRHGAQVGGFTLAPGGKRVVVVATLDNLLKGAATQAMQNLNLALGIDELMSIPH
>NZ_CP044092.1|WP_005414016.1|4421100_4421355_+|membrane-protein-insertion-efficiency-factor-YidD
MISRLLIALLRFYKRFISPLLGPRCRFVPSCSEYAMEAISRHGPLRGSWLAARRLGRCHPFHPGGFDPVPESPNAPSCRCTGKH
>NZ_CP044092.1|WP_012480835.1|4421356_4422703_+|dihydroorotase
MSSTLITNARMVNEGRTFDGDLRIENGRIAQIGSGLAPRDGEQVVDAAGRWLLPGMIDDQVHFREPGLTHKGDIASESAAAVAGGLTSFMDMPNTNPPTLDSTILEAKYELARGRAWANYGFYHGASNDNLDAIRALDPKKAPGVKVFMGASTGNMLVDNPETLDAIFRECPTPIITHCEDTPMIDANLKAFQEKYGDALTPDMHPDIRSREACIKSTRLAMSLARKHGTRLHVLHISTADELALFEKGPLIRADGSRKQITAETCVHFLHFARPDYATKGNLIKCNPAIKEVSDREAITAALADDVLDVLATDHAPHTWEEKQKPYAQAPSGLPLVQYALVAALERVHEGKLTREQVVQKFAHAPAQLFDVEERGFLREGYFADLVLVEDVPFTVKREDVLSKCGWSPFEGTTFRSRVASTWVNGQLVWDGSKLVGEPAGQRMTYDR
>NZ_CP044092.1|WP_087944437.1|4422642_4423551_+|M23-family-metallopeptidase
MGRQQTGGRARRPAHDLRPLMRAALFTGALLLAAPLLSVPSAHAQDGIGSLIDSRVVFPASASQGALVIGKVPAGSRVQYAGRQLRVSGYGSVVFGIGRDEKGPLRVQVQRPDGGSETATIAVTPRDWPTERVNGVPPKTVNPPPAIAERIKREQAQVTAARARDDDRTDFTQTFIWPVQGRISGRFGNARVYNGQPGAGHSGMDIAVPTGTPVKAPAAGIVTFAGPDLYLTGGTLLLDHGFGVSSNFLHLSRIDVKVGDRVEQGQVIAAVGATGRATGPHLHWGMNWFDTRIDPLLVLERK
>NZ_CP044092.1|WP_133050398.1|4423656_4424361_-|phytoene/squalene-synthase-family-protein
MSSTALDSFLDKWRSRWPEWSVAAPFVAESQRELAVAWFALLQEFDDMLNTGGDPLPADAKLAWWGEELRSWAGHRSRHPLGRLLEPVRAPWAQLAEALPDLVEARTVALDAASAERALANYAEAVAAVEAALFADKPRTGAGRAVQLQTLAQRLQDAGVAGLPRSLLDGDASTAAQRWAQHLLKGWGTRVPGPRPRRVWSSLARARVAAQAAGKPIEATPVRTLLRVWWAARG
>NZ_CP044092.1|WP_005410378.1|4424372_4425068_-|phosphoglycolate-phosphatase
MTSARFPRAVLFDLDGTLLDSAPDFVATCNAMLAERGRAPIDPAALRPVVSKGSRAMVSAAFPDLDAAARDALIPEFLQRYEALIGQHAVLFDGVAGMLAALDEAGTVWGIVTNKPEYLARLILPQHGWQQRCAVLVGGDSLAERKPHPLPLLHAAQAIGIAAEDCVYVGDDERDIIAARAAAMPSVAALWGYRLHSDDPLAWQADVLVENAELLQLASLWPTRPAAPAQP
>NZ_CP044092.1|WP_005410379.1|4425064_4425781_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MTAPHASSNFDQAELDKFAALANRWWDADGPQKPLHALNPVRLKYVADRVPLRGARVLDIGCGGGLLSEALAQAGADVTAIDLAPELVKVARLHALESGAKVDYRVQAAEDLAAEQPGSFDVVTCMEMLEHVPDPGAIIEACKRLLKPGGHLFLSTINRTAAAFAVAIVGAEYVARLLPKGTHHYQEFIKPAELARWLREADMQLVDVSGMAYEPWRNHARLSSRTDINYLAYAVKPA
>NZ_CP044092.1|WP_005410380.1|4425806_4427150_-|TRZ/ATZ-family-hydrolase
MSDSPHLPEACDLLIEAGYVVPIEPHAVVLEDHAVAVRGSEIVAILPRAEARARFRATQVVSRPEAALMPGLVNAHTHNPMTLLRGVADDLPLMTWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCANENYFFGDVQAAVYKKHGFRALVGAVIIDFPTAWAKTDDEYFAKAGELHDQWRTDPLIGTAFAPHAPYTVNDANFERVRMLSDQLDMQVHLHTHETAQEINDSIKLHGQRPLARLDRLGLVNDRLIAVHMTQLTDAEIHLCAERGVSVVHCPESNLKLASGFCPACALQRAGVNLAIGTDGCASNNDLDMFSENRTAAILAKAVADDATALDAATTLRASTLGGARALGFGERIGSIEVGKQADLVCVDLSALETQPLHNVLSQLVYATGRQQVSDVWIAGKPKLVQRELVGMDLPGIIANARQWRERIRHIRA
>NZ_CP044092.1|WP_005410381.1|4427350_4427917_-|elongation-factor-P
MASYGMNDVKNGMKILVNNQPAVIIDTEYVKPGKGQAFTRVKYRLIKDGRTQEVTMKSTDSLDAADVVDTDMNFMYSDGEYWHFMDPESFEQVQATKAGMGGAEKWLKGEESCVVTLWNGEPIFVQPPNFVELKITETDPGVRGDTSGGGGKPATLETGAVVRVPLFVNQDEVIRVDTRSGEYSARVK
>NZ_CP044092.1|WP_133050396.1|4428013_4429054_+|EF-P-beta-lysylation-protein-EpmB
MITAGPLSMQLSAFPRPQSPGAPARWQQLWRQALRDPQALLARLQLDPAALGVSEAAMAQFALRVPEGFVARMRKGDPADPLLRQVLPIDEEMRPTPGFSFDAVGDGAAKKATGVIQKYRGRALLVATGSCAINCRYCFRRHFDYGAENAAKGGWQEAVAAIAADPDIDEVILSGGDPLSLATHKLAELTDALRAIPHIRRLRIHTRLPIVLPERVDEELLAWLGGLPWPLAIVVHANHANEFDASVDAAMARLRGIGAQLLNQAVLLRGVNDSVQALQDLSERSFAAGVLPYYLHQLDRVEGVAHFEVDDTRAKALIAGLTARLSGYLVPKLVRELPGAPSKRPV
>NZ_CP044092.1|WP_005410383.1|4429119_4431246_-|GGDEF-domain-containing-protein
MKWLGSGMQARFLLAMGGAMVVVVAILAVLLGRQTAMQSEVRTLSGGVIHELFDRSVRSRGEAMARELSDALANPLYYRDLDQVGVLVRSTARQPVVRYVLVFDERGRLVHDGSVEVPGFGQPMADPLAPKAAAAQALLVQESPKVLDNTMPIMVGNQRIGGVRVGMALDEVQQREQAANATLGERLQLVGSRHLGWLLLMLGLLVVIGVVVILYVQRTLVAPIRDLAAAARRIEAGDYQTPLAENTRDDEVGELVRGFARMRDAIARHDREVRRMAYTDALTGLTNRLAFREALDHRLMAARAANHRLGLLFADIDDFKRVNDTLGHEAGDEALLQFAQRIGRAVAEAGGDEALLARFGGDEFVILVGDGDVAANARLLAEVLVRELGRPLVVQGRELFLGTSIGVTLFPDDAADATTLLKNGDIAMYQAKMAGKNCYRYYSRAMDHAVERRVHMEQELRGAWERGELRLAYQPIFRMRDRRMVGVEVLLRWQHPTLGTIPPSVFIEVAEQSGLIEIIGPKVLRAACMEASQWPRGAAGDDLFVSVNVSPRQLRGGELPALVAQCLHESGLPASRLHLELTETAVIGDEMVAAQLLDKLHRTGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFVADMQRDPDDLALTTAIIAMAHALGITVVAEGIEQQAQFELLAQRGCDLGQGYWLSHPVTATEVVRMIESGV

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Crispr_ID: NZ_CP044092_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044092_14

4579135-4579242

Orphan

Consensus_repeat	Method
TTGGTCGGCACCGCCTTCATCCACGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044092_14

>merge|NZ_CP044092|14|4579135-4579242|CRISPRCasFinder
TTGGTCGGCACCGCCTTCATCCACGCAGGGCTTGGATCTACCGACCTCTGGTGGGTACTGACCTTTGGTGGGGGCCGACCGTTGGTCGGCACCGCCTCCATCCACGCA

>NZ_CP044092|14|13|4579135-4579242|CRISPRCasFinder
TTGGTCGGCACCGCCTTCATCCACGCA	GGGCTTGGATCTACCGACCTCTGGTGGGTACTGACCTTTGGTGGGGGCCGACCG
TTGGTCGGCACCGCCTCCATCCACGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044092.1\|WP_150359981.1\|4583571_4584906_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|182626
NZ_CP044092.1\|WP_005410509.1\|4570900_4571575_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP044092.1\|WP_005410522.1\|4584942_4585203_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP044092.1\|WP_005410513.1\|4574397_4575648_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234819
NZ_CP044092.1\|WP_005410514.1\|4575651_4576896_-\|DUF418-domain-containing-protein	unknown	unknown	gnl\|CDD\|225193
NZ_CP044092.1\|WP_005410523.1\|4585192_4586071_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182567
NZ_CP044092.1\|WP_005410517.1\|4578261_4579035_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP044092.1\|WP_114618710.1\|4572003_4572924_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP044092.1\|WP_150359980.1\|4580830_4582537_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|214515
NZ_CP044092.1\|WP_065183950.1\|4573042_4574401_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
NZ_CP044092.1\|WP_076739744.1\|4571668_4571977_-\|cysteine-methyltransferase	unknown	unknown	gnl\|CDD\|226219
NZ_CP044092.1\|WP_062606147.1\|4586614_4587982_-\|metalloprotease-PmbA	unknown	unknown	gnl\|CDD\|182922
NZ_CP044092.1\|WP_150359982.1\|4588679_4590125_-\|metalloprotease-TldD	unknown	unknown	gnl\|CDD\|182685
NZ_CP044092.1\|WP_049459374.1\|4568553_4569048_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|226383
NZ_CP044092.1\|WP_005410518.1\|4579342_4580677_-\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP044092.1\|WP_005410524.1\|4586152_4586527_-\|DUF4870-domain-containing-protein	unknown	unknown	gnl\|CDD\|378240
NZ_CP044092.1\|WP_012480915.1\|4576995_4577478_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP044092.1\|WP_062606145.1\|4588050_4588638_+\|ribosome-associated-protein	unknown	unknown	gnl\|CDD\|235377
NZ_CP044092.1\|WP_032129003.1\|4577590_4578130_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP044092.1\|WP_062606151.1\|4582533_4583079_+\|WG-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379719

Protein	Function_ID	Function_description	E-value
NZ_CP044092.1\|WP_150359981.1\|4583571_4584906_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|182626	PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional.	4.93541e-108
NZ_CP044092.1\|WP_005410509.1\|4570900_4571575_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	6.36451e-38
NZ_CP044092.1\|WP_005410522.1\|4584942_4585203_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	1.00119e-21
NZ_CP044092.1\|WP_005410513.1\|4574397_4575648_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	1.0352e-73
NZ_CP044092.1\|WP_005410514.1\|4575651_4576896_-\|DUF418-domain-containing-protein	gnl\|CDD\|225193	COG2311, COG2311, Predicted membrane protein [Function unknown].	1.14508e-87
NZ_CP044092.1\|WP_005410523.1\|4585192_4586071_+\|hypothetical-protein	gnl\|CDD\|182567	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase.	1.10199e-95
NZ_CP044092.1\|WP_005410517.1\|4578261_4579035_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	8.5714e-41
NZ_CP044092.1\|WP_114618710.1\|4572003_4572924_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.7284e-10
NZ_CP044092.1\|WP_150359980.1\|4580830_4582537_+\|alkaline-phosphatase	gnl\|CDD\|214515	smart00098, alkPPc, Alkaline phosphatase homologues.	1.08699e-131
NZ_CP044092.1\|WP_065183950.1\|4573042_4574401_-\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NZ_CP044092.1\|WP_076739744.1\|4571668_4571977_-\|cysteine-methyltransferase	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	2.6097e-21
NZ_CP044092.1\|WP_062606147.1\|4586614_4587982_-\|metalloprotease-PmbA	gnl\|CDD\|182922	PRK11040, PRK11040, peptidase PmbA; Provisional.	2.92515e-170
NZ_CP044092.1\|WP_150359982.1\|4588679_4590125_-\|metalloprotease-TldD	gnl\|CDD\|182685	PRK10735, tldD, protease TldD; Provisional.	0
NZ_CP044092.1\|WP_049459374.1\|4568553_4569048_+\|VOC-family-protein	gnl\|CDD\|226383	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown].	9.41774e-74
NZ_CP044092.1\|WP_005410518.1\|4579342_4580677_-\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	1.9095e-115
NZ_CP044092.1\|WP_005410524.1\|4586152_4586527_-\|DUF4870-domain-containing-protein	gnl\|CDD\|378240	pfam09685, DUF4870, Domain of unknown function (DUF4870).	4.886e-34
NZ_CP044092.1\|WP_012480915.1\|4576995_4577478_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	1.09073e-54
NZ_CP044092.1\|WP_062606145.1\|4588050_4588638_+\|ribosome-associated-protein	gnl\|CDD\|235377	PRK05255, PRK05255, ribosome-associated protein.	7.16599e-69
NZ_CP044092.1\|WP_032129003.1\|4577590_4578130_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.23273e-40
NZ_CP044092.1\|WP_062606151.1\|4582533_4583079_+\|WG-repeat-containing-protein	gnl\|CDD\|379719	pfam14903, WG_beta_rep, WG containing repeat. This repeat contains an N-terminal WG repeat motif. The extent of the repeat is poorly defined. This repeat may form a beta solenoid structure (Bateman A pers. obs.).	9.8237e-05

>NZ_CP044092.1|WP_005410517.1|4578261_4579035_+|C40-family-peptidase
MTTDDLKSEGQTSVSSRSARPLLLGLALCLTSLPAWSQTAPNRSDVSPAPVAESTARPAAKAEAAAPQRSRVDAAASATLAALLPHLAANDTIPLMDRSAVVAGDLSRLLANYDTSSAANGSVVGTAADNGKVQSLLRRAMTLLGTPYRWGGSNPDSGFDCSGLVGYVFRSALGIELPRVSREMAHDDNAELINDRTALAAGDLVFFGRKGRVDHVGIYVGDGRFLHAPSSGKDVRVDTLLSGYWGNKFMQARRVDL
>NZ_CP044092.1|WP_032129003.1|4577590_4578130_+|C40-family-peptidase
MHITPVSSGLRRLLAPALLLALPVLMTACGGGKATRPAPPPPTANWPKTVPDNPEAANSVLMRAISLVGTPYRYGGNTPDSGFDCSGLVAYVYREMLDLKLPRTSRDLAAVQGPKIDPQRLATGDLVFFGSRGSVTHVGIYVGEGRFVHAPSTGGTVRLDSLSGPYWKDHYTGAKRVLR
>NZ_CP044092.1|WP_012480915.1|4576995_4577478_-|peptidylprolyl-isomerase
MKIEKDRVVRFHYTVSEVGQEPIESSKDRGEPLAILIGHGNIIPGLENAMMDKEAGATFSVDVNAADAYGERREGLSQRVPKKHFGNTKLAPGQQVVLQTNFGPRAVTVQKVGMSVVDVDLNHPMAGKDLHFDVEIVDVREAGKEEIDHGHVHGDGGHHH
>NZ_CP044092.1|WP_005410514.1|4575651_4576896_-|DUF418-domain-containing-protein
MADLPDGRPVNAASPSLQPVASGERIAVLDVLRGAALLGILLMNIEAFSGPLDLAFTGIDVHWQGIDYWADAFVYVFVQGKFFTLFSLLFGAGFAVMAQRAEAAGRDFTPFYLRRSAGLLLIGLCHALLVWSGDILVMYALVSLPLLACREAPRSWLPWMGVTVYLGGVAMMLLVGAMVSMASAEDVRKMLTDAQQSIDLQRLVYGQGSWMQANAQRLSEFGTSMGAMLITGPEVLGMFLIGSWFAGSGALATPDRFPRLYAVLRWGALPFGLLVTLLGVAWKPYLAPGAYDLPVTAAMALVTIGGLPMCLGYLAWIVHWRARLGWLAPVGRMALTHYLGQSLLCTWLFYHYGLGAFETMPRSVQLMFALLLFTVQVGISHVWLRRFRFGPMEWLWRAMTYRQWPPMRREAGQG
>NZ_CP044092.1|WP_005410513.1|4574397_4575648_-|FAD-dependent-oxidoreductase
MQGAREDVIVVGAGAIGLAAALALRAQGRQVRVIDRGRVGGATSHGNCGTITPSHAPPLAAPGVPLRALRWMLDPRAPLYVRTRLDPALWRWLLQFGARCNARDWLHATRARGALLNDSRLRLAQWVQTHALDCEFEARGLDYVFGDARNFDHHAAECEALNAQGIASARIDGTDYARDNPAFHDRLAGAIHFPGDAQLRPDRYTAELARVLRAQGVVIEEQSDVEDFSADAQGVRVRVGERMLLARELVLATGPWSPRWARQLDLRVPIQPGKGYSLTWSRPAQVPQRPVVLKDHSVFVIAWREALRLGGTMEFAGADPQLRTTRLQALQQAADHYLRAPRGVQLQEQWCGWRPMSVDDVPLIGRAPAHPHVWLAAGHGMLGISMSAGTGQLIADLVCGRTPAIDPAPYRPERFR
>NZ_CP044092.1|WP_065183950.1|4573042_4574401_-|glutathione-disulfide-reductase
MSTAPYDYDLIVLGGGSAGLAGAIRAAQRGKRVALLEPGELGGTCVNVGCVPKKAMWLAADLHERIGLASAMGFDVKARPALSWKELVIHRQAYISNIHTSYHKRLDETGVVRVPARGHLLDAHTVACSDGVRYSAEHILIATGAHPLRPDIPGAELGLVSDDFFDLRAAPAEVAIIGGGYIAVELAGLLQALGSKVSLLVRGQRLLDRFDYELTDQLAENLKQQGVRIHFGYRLRELQRDGERVRAFGHDGPLDSVFDAVFFATGRRGNSRDLGLEALGIGIGEHQQVQVDEWQTTCVPSVHAVGDIAGKVGLTPVAVAASRRLMDRLFGGRPQSKMDYENVASVVFSHPPLGAVGMSEEEARARFDQVSVYHSRFRPMLQALANGTQRSLFKMVCAGPEERVVGIHLLGEAADEILQGFAVAVKMGATKAQFDDTVAIHPTSAEEVVLMR
>NZ_CP044092.1|WP_114618710.1|4572003_4572924_-|DMT-family-transporter
MSSPASRIATASPRIALGGIGLAVIGAIAASGKAIIVKLGLRHGVDATTLLALRMLMALPLFVLMALWAARRAEPLTWADRARVLWLGFTGYYLSSLLDFQGLQYISVTLERLILYLNPTLVLLINVLLTRQRPGRWQIGALVLSYLGVLLAFGHDLQREGGQIIVGSLLVLGSALSYALYLFGSGQVVARIGAVRLTAYASCVASVLVLLHFAVTHPLPLLWQAPAPVQWLSLVNATVCTVLPVLAIMLAVQRVGSSLAAQVGMLGPVSTIVMSLWLLDEPMGPAQIAGTVLVLIGVLLVTRLRR
>NZ_CP044092.1|WP_076739744.1|4571668_4571977_-|cysteine-methyltransferase
MAVIRAIPAGQVMGYGQVAMRAGLPGRARLTARILGQNDDPDLPWHRVLRSDGRIAMEEGSAGWREQSQRLRAEGVVVENGRVRMPAADPAAALDAAVWGPG
>NZ_CP044092.1|WP_005410509.1|4570900_4571575_-|rhomboid-family-intramembrane-serine-protease
MFPRLPTVTKALLIANAILFLLQQPFLLGMQTFEPFMLQPLQQGFDAFSPGGNFQPWQLLTYGFLHGSFGHLFFNMLAVFMFGAPLEQTWGEKRFLLYYLVCVAGAGVCQLLVGTLLENPATVLGASGGVFGLLLAYGMLFPNQRVMLLFPPIPMKARTFVILFGVGELVLGMTGWQPGVAHFAHLGGMLFGWLLIRYWRGQPPFNKRRPPGPPKRPNHLRSVK
>NZ_CP044092.1|WP_049459374.1|4568553_4569048_+|VOC-family-protein
MAHKNTICVWYDNGALEAATFYASLLPDSAVTAVHHAPGDYPDGKEGNVLTVEFTVCGIPCVGLNGGSAFKHSEAFSFQIQTEDQAETDRLWNAIVGNGGQESQCGWCKDRWGISWQISPRMLIEAVTSKDKALAKRAFNAMMPMKKIDIATIEAAIKEGDGGD
>NZ_CP044092.1|WP_005410518.1|4579342_4580677_-|dicarboxylate/amino-acid:cation-symporter
MKLVSAWLRIPFWQRVVGGFVLGALAGWALGPAAETWFGPLGELYVTLIKMIAVPLVFFAVINAISSLHGQKSVAALSGRTFLWFVITAALAVCVGLGVGTVLQPGAGGLQLTMASNYVPREVPSVVQVLLDVVPANVFYALSGIGTKVNAAGETVLAAGRGSILPVIFFAGLVGFAIVKLGEKVTEARKLVGQMSDIMIQVTRFVLEVTPIGTFGLIAGLVGSYGFEKLLPLGHFVLALYVACALHIVVVYSALLLAHGLNPLKFFRGAAPGMQVAFVSSSSFAAMPVALRSITHNLGVNKDYGSFAVPLGASIKMDGCGAIYPALCAVFIAQYSGVPLTPEQYVVVLIASVLGSFGTAGVPGTAVIMATVVLSAANLPLETIGYLYAIDRILDMMRTMTNVTGQMLVPVIVAKETGLLDQAVYDNPSSNVGVDDPDPTPPRG
>NZ_CP044092.1|WP_150359980.1|4580830_4582537_+|alkaline-phosphatase
MRRSVSLLAACATTLLLGACASTTPATAPAGLKVAVDPVAHPAGETPQWWYRSGAAQAAANGAMSGKAKNVILFLGDGMSLTTVAASRIYEGQQKGGSGEENLLSWERFPATAFSKTYNTDSQTPDSAGTMTAITTGVKTHMGAIGVSAGSRTDCADSLSKGLLTWLQLADSAGLATGVVSTARLTHATPAATYAHSPERNWENDTDLTEAAKAAGCKDIAQQLLSTSRYGRGPLVALGGGRGEFTTVEERDPEYDDKVGQRLDGRSLVQEWQQAHPQGAYVWNSKQLAAAANAPAILGLFEPDHMRYEYERPQDPGGEPSLAELTAAAIKNLSKHQEGYVLMIEGARIDHANHSGNAYRALTETVALSDAVRVANELTSADDTLIIVTADHSHTLNFVGYPARGNPILGKVKDKGGEDGAGKLDYALDGTGQPYTTLSYANGPGHTGSSNQQPAGPKRYPHNPSSFEPANGRPNLREVDTEHPDYMQEALVPMKSESHGGEDVGIWARGPGSKAIRGTLEQNAIYHMIVQATPALRERLCQAGTCDDKGVPVQLPAPTAFERKAEAK
>NZ_CP044092.1|WP_062606151.1|4582533_4583079_+|WG-repeat-containing-protein
MIAREARPDAASGRFARSLALLGMLVSATAAAQAPACKLLTDEHGLWPLPNCEVIDHRPKISADTLKALNYDDHGLAVVYADQGFHYVDRKGRSLPVLTWDNGPETPQEGLLRARVGNRVGYFDLTFRQVVPGTFDFAWPFQDGVAEVCNGCRRGTPDADGHTPMEGGEWFRIDRSGRRVK
>NZ_CP044092.1|WP_150359981.1|4583571_4584906_+|tRNA-lysidine(34)-synthetase-TilS
MQGAALPSKPHPILATVTAFPALVPLDAPLLVGYSGGVDSTVLLHWLWRCAQTSGTALRAVHVHHGLQPDADDWVLHCRQQCDAWGIELAVHRVQVENGTGLGTEGAARQARRAAFAAELREGETLALAQHQDDQAETFLLRALRASGVDGLAAMSTHSRLGEHPFWRPLLAVPRSALLDYARQHVLRWIEDPSNAEDHADRNFLRLQVLPLLRQRWPHAAAALAGSATHCRQTRELLDEEDAELIAHLEVAPRVLSLELLRQMSPRRAARVLRAWVLGHDAAPLPASVLQQALEELLPADTDRQARVRWQQHVIQQWRDHAYLLPARLPSLPLDWQAEWDGRAPLPLPDGGQLSLLGAGAFEQPLQVRARVGGERILLPGRQHSHALKDCLQREHLAPWRRAQLPLIFDGPQLLAAADVVIAAPLQAWLQANEAQLRWRPGGW
>NZ_CP044092.1|WP_005410522.1|4584942_4585203_+|exodeoxyribonuclease-VII-small-subunit
MAKKSPENASPVAQFEQSLESLEQLVEQMETGELSLEASLSAYERGVGLYRQCQQALEQAELRVRLLSDPAQPEASEPFDPPSHDG
>NZ_CP044092.1|WP_005410523.1|4585192_4586071_+|hypothetical-protein
MTAEVLFARWRDRIESQLDAALPSPAEAPQRLHQAMRYSVLGGGKRMRPLLVYASGHLFGAQPESLDAAAMSVELIHAYSLVHDDLPAMDDDALRRGKPTTHIAFDEATAILAGDALQTRAFGLLADAPLPATLRVACLQTLAHASGASGMCGGQALDIDATGQQQTLAALTRMHALKTGALIRAAVRMGALCGQAHEPQLAQLDSFADALGLAFQVRDDILDVEASSEQLGKTAGKDQAQDKSTFPALLGMDGAKAQLHELAARMQSILAGYGEEADALRALATLAVERDH
>NZ_CP044092.1|WP_005410524.1|4586152_4586527_-|DUF4870-domain-containing-protein
MSEFDNVPPPPPATADVPADQRTMALAAHLLGIFTGFIGALIIWLINKDDAGKAFVTDQAKEALNFQITVTIAMVISMILTIVIIGVFLAPIVGIISLVFSIIAAVKANNGEAYRYPFALRLIK
>NZ_CP044092.1|WP_062606147.1|4586614_4587982_-|metalloprotease-PmbA
MNVIAPEAAVGDDSPARLERLADLSQQLLDRARALGASQAEVSCSEDRGLEVNVRLGEVETVQSTRDRGIAVTVYFGQRKGSASTGDLNEASLAATVEQACAIARHTEDDAAAGLAEAALMATHFPDLDGWHPWALQADEAVDLALACEAAGREADAQIRNSDGASVSSMQSLSVYANSHGFIGRERGTHHSVGCALIAGQGDGMQRDGWYTSALAREDLEDVDLVGRRAAERTVARLQPRSLATGSMPVLFAPEVARSLVGHLLSAVSGGALYRQASFLLDSVGQRLFPEWMQIEELPHLRRGLRSAAFDGDGVATRASALVRDGVLQRYVLGSYSARKLGLHTTANAGGVHNLQLAANAGPLHDIARQMGDGLLVTELMGQGVNGVTGDYSRGAGGFRVENGEIQYPVDGITIAGNLREMFSSIEAVGSDVDPRSHIRTGSILLGRMTIAGND
>NZ_CP044092.1|WP_062606145.1|4588050_4588638_+|ribosome-associated-protein
MRGRDEETGEFHDKSRSQNRRDALDVLALGEKLVSLTPAQLARLPIPEDLLPHIAECKRITAHIAHKRQLAFLAKHMRREEEATLDAIRDALDANSETGRREVAMMHRVEDWRERLLAEGDKALAALLDDYPQADRQQLRTLVRNAQAEKAKNKPPRAYREIYQVLRALMLPAALGLKASAEDADHVETDEADED
>NZ_CP044092.1|WP_150359982.1|4588679_4590125_-|metalloprotease-TldD
MTDIALTLAQDRLLRPGGLDTNGLERTFGQLLGPGVDFGDLYFQHARRERWSVEDGIVKDGAHSIEQGVGVRAMSGEKTGFAYSDDIHADALLAAAQSARAISREGGAQSGRSLLRGNSRALYPALDPIDGVGNEAKVEVLKRLDGYLRAADPRVKQVMVSLSGGVDTVLIARSDGVLGADVRPLVRLNVQVIVEHNGRRESGYAGGGGRYGYGELFADGRPEAFAREALRQALVNLDAVPAPAGVMPVVLGPGWPGVLLHEAVGHGLEGDFNRKGTSVYAGRIGERVAAPGVTIVDDGTLDGRRGSLNIDDEGHPSQCTTLIEDGILVGYMQDSLNARLMGMAPTGNGRRESFAHLTMPRMTNTYMRAGQHDPQEMIRSVKKGLYAVNFGGGQVDITSGKYVFSATEAYLIEDGRITAPVKGATLIGNGPETMQKVRMVGNDLALDEGVGICGKDGQSVPVGVGQPSLLIEGITVGGTQA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044092_5	5.2\|564914\|28\|NZ_CP044092\|CRISPRCasFinder	564914-564941	28	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	323704-323731	6	0.786
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	MT639645	Mycobacterium phage PainterBoy, complete genome	13487-13519	7	0.788
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	MN096376	Mycobacterium phage Lucyedi, complete genome	13487-13519	7	0.788
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	NC_023564	Mycobacterium phage EagleEye, complete genome	13550-13582	7	0.788
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	NZ_CP044974	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence	45753-45785	8	0.758
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	NZ_CP044977	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence	48301-48333	8	0.758
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	NZ_LR594693	Variovorax sp. WDL1 plasmid 5	16386-16418	8	0.758
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	NZ_LR594677	Variovorax sp. PBS-H4 plasmid 3	16318-16350	8	0.758
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	NZ_LR134458	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 16, complete sequence	33842-33874	8	0.758
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	NC_020060	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence	195009-195041	8	0.758
NZ_CP044092_3	3.1\|375445\|31\|NZ_CP044092\|CRISPRCasFinder	375445-375475	31	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	279739-279769	9	0.71
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	NZ_CP015988	Sphingobium sp. EP60837 plasmid pEP1, complete sequence	174903-174935	9	0.727
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	MK059749	Mycobacterium phage CRB2, complete genome	44494-44526	9	0.727
NZ_CP044092_13	13.3\|4420515\|33\|NZ_CP044092\|CRISPRCasFinder	4420515-4420547	33	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	770537-770569	9	0.727
NZ_CP044092_3	3.1\|375445\|31\|NZ_CP044092\|CRISPRCasFinder	375445-375475	31	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2303553-2303583	10	0.677

1. spacer 5.2|564914|28|NZ_CP044092|CRISPRCasFinder matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 6, identity: 0.786

aggatcatggcgtcgattggccctgtgt	CRISPR spacer
gcgatcatggcgtcgatcggcccggcgc	Protospacer
. ***************.***** *.*.

2. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to MT639645 (Mycobacterium phage PainterBoy, complete genome) position: , mismatch: 7, identity: 0.788

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
gcggtcttggcggcagccttcttggccggcgac	Protospacer
.* * ****************** .******

3. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to MN096376 (Mycobacterium phage Lucyedi, complete genome) position: , mismatch: 7, identity: 0.788

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
gcggtcttggcggcagccttcttggccggcgac	Protospacer
.* * ****************** .******

4. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to NC_023564 (Mycobacterium phage EagleEye, complete genome) position: , mismatch: 7, identity: 0.788

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
gcggtcttggcggcagccttcttggccggcgac	Protospacer
.* * ****************** .******

5. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to NZ_CP044974 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence) position: , mismatch: 8, identity: 0.758

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
gaccgcttggcggctgccttcttcgccggcggg	Protospacer
. . ********** *********.****** .

6. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to NZ_CP044977 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence) position: , mismatch: 8, identity: 0.758

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
gaccgcttggcggctgccttcttcgccggcggg	Protospacer
. . ********** *********.****** .

7. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to NZ_LR594693 (Variovorax sp. WDL1 plasmid 5) position: , mismatch: 8, identity: 0.758

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
gaccgcttggcggctgccttcttcgccggcggg	Protospacer
. . ********** *********.****** .

8. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to NZ_LR594677 (Variovorax sp. PBS-H4 plasmid 3) position: , mismatch: 8, identity: 0.758

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
gaccgcttggcggctgccttcttcgccggcggg	Protospacer
. . ********** *********.****** .

9. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to NZ_LR134458 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 16, complete sequence) position: , mismatch: 8, identity: 0.758

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
gccgggccggcggccgccttcttcgccggcgcc	Protospacer
.*.** ..****** *********.*******

10. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to NC_020060 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899a, complete sequence) position: , mismatch: 8, identity: 0.758

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
acgagcttggcgccagccttcgtcaccgcttcg	Protospacer
** .******** ******** ****** . *.

11. spacer 3.1|375445|31|NZ_CP044092|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.71

cggtagatccgcgccgtgcgtggatgggaaa	CRISPR spacer
gagcagagccgcgccgcgcgtggatggttgg	Protospacer
 .*.*** ********.**********  ..

12. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to NZ_CP015988 (Sphingobium sp. EP60837 plasmid pEP1, complete sequence) position: , mismatch: 9, identity: 0.727

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
gccctgatggcggcagccttccccaccggcgcg	Protospacer
.*.    **************..*********.

13. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to MK059749 (Mycobacterium phage CRB2, complete genome) position: , mismatch: 9, identity: 0.727

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
gccttcttggcgggagccttcttcgccggggtc	Protospacer
.*.  ******** **********.**** *.

14. spacer 13.3|4420515|33|NZ_CP044092|CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 9, identity: 0.727

actggcttggcggcagccttcttcaccggcgca	CRISPR spacer
atgaccttggcggcggccttcttcgccggagtg	Protospacer
*. . *********.*********.**** *..

15. spacer 3.1|375445|31|NZ_CP044092|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.677

cggtagatccgcgccgtgcgtggatgggaaa	CRISPR spacer
tcagccatccgcgccgggcgcggatgggatt	Protospacer
. .   ********** ***.********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1860151 : 1867602

Escherichia_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111111844.1\|1860151_1861207_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	6.2e-83	47.6
WP_111189305.1\|1861221_1862109_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.0e-95	58.2
WP_111189306.1\|1862105_1862663_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.2e-45	50.6
WP_111189307.1\|1862659_1863556_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	3.7e-28	36.8
WP_111189308.1\|1863649_1865053_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.5e-47	29.4
WP_150359453.1\|1865064_1866411_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	8.5e-29	26.2
WP_099527084.1\|1866645_1867602_+	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	5.2e-89	48.1

DBSCAN-SWA_2

2251343 : 2362963

106

Escherichia_phage(12.2%)

integrase,plate,protease,head,tail

attL 2285951:2285974|attR 2331277:2331300

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049434066.1\|2251343_2253476_-	hypothetical protein	A0A076YL68	Mesorhizobium_phage	1.1e-59	29.9
WP_005412402.1\|2253475_2254066_-	hypothetical protein	A0A2R2ZGD2	Ralstonia_phage	1.7e-26	41.9
WP_049434069.1\|2254165_2255119_-	hypothetical protein	L7TJ83	Rhizobium_phage	4.1e-62	42.4
WP_049434070.1\|2255145_2255931_-	hypothetical protein	A0A1B1IVZ8	uncultured_Mediterranean_phage	1.1e-20	31.1
WP_005412405.1\|2256091_2257648_-\|head,tail	phage collar / T7-like phage head-to-tail joining protein	L7TJ79	Rhizobium_phage	1.1e-85	37.6
WP_005412407.1\|2257813_2257993_-	hypothetical protein	NA	NA	NA	NA
WP_049434072.1\|2258057_2258594_-	adenylate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	8.1e-31	46.7
WP_150359514.1\|2258689_2259007_+	hypothetical protein	NA	NA	NA	NA
WP_049397854.1\|2259010_2259217_-	hypothetical protein	NA	NA	NA	NA
WP_004154583.1\|2259204_2260038_-	hypothetical protein	M1HMA9	Pelagibacter_phage	2.0e-36	36.0
WP_049434075.1\|2260180_2260471_-	hypothetical protein	NA	NA	NA	NA
WP_004154585.1\|2260467_2260716_-	hypothetical protein	NA	NA	NA	NA
WP_005412414.1\|2260866_2261232_-	hypothetical protein	NA	NA	NA	NA
WP_050483582.1\|2261228_2261567_-	hypothetical protein	A0A2H4P845	Pseudomonas_phage	9.6e-22	53.2
WP_065428010.1\|2261548_2263423_-	DNA polymerase	A0A076YNV1	Mesorhizobium_phage	8.5e-160	48.2
WP_049434078.1\|2263435_2264086_-	hypothetical protein	NA	NA	NA	NA
WP_005412417.1\|2264096_2264345_-	hypothetical protein	NA	NA	NA	NA
WP_004154589.1\|2264510_2266142_-	toprim domain-containing protein	L7TLT7	Rhizobium_phage	3.7e-151	56.6
WP_049434079.1\|2266128_2266308_-	hypothetical protein	NA	NA	NA	NA
WP_080101784.1\|2266304_2266706_-	hypothetical protein	NA	NA	NA	NA
WP_004154593.1\|2266702_2267065_-	putative N-acetylmuramoyl-L-alanine amidase	I6Q9Z5	Yersinia_phage	2.5e-15	40.6
WP_100049893.1\|2267065_2267545_-	RusA family crossover junction endodeoxyribonuclease	A0A2I7QZP6	Vibrio_phage	1.4e-05	31.1
WP_004154595.1\|2267486_2268152_-	hypothetical protein	A0A076YJ33	Mesorhizobium_phage	1.5e-26	40.9
WP_049397849.1\|2268309_2268594_-	hypothetical protein	NA	NA	NA	NA
WP_150359515.1\|2268774_2271210_-	T3/T7 RNA polymerase	L7TQW5	Rhizobium_phage	3.3e-164	40.7
WP_052504338.1\|2271745_2272306_+	hypothetical protein	NA	NA	NA	NA
WP_043401326.1\|2272596_2273892_+	trigger factor	NA	NA	NA	NA
WP_004146318.1\|2273968_2274595_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	7.7e-57	57.4
WP_004154600.1\|2274721_2276011_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.9e-135	58.0
WP_012479268.1\|2276154_2278602_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.5e-220	52.0
WP_005408270.1\|2278819_2279092_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	4.5e-22	62.9
WP_005408271.1\|2279933_2281889_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_044569572.1\|2282117_2283317_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_005412427.1\|2283313_2284078_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_049397081.1\|2284089_2284740_+	hypothetical protein	NA	NA	NA	NA
WP_005408275.1\|2284753_2285206_+	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-42	53.4
WP_005408276.1\|2285210_2285942_+	DNA polymerase III subunit epsilon	A0A1B2LRV5	Wolbachia_phage	3.8e-07	42.4
2285951:2285974	attL	NA	NA	NA	NA
WP_005408277.1\|2286053_2286758_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_150359516.1\|2287421_2290436_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_005408281.1\|2290726_2291131_+	hypothetical protein	A0A1C9C5K8	Heterosigma_akashiwo_virus	1.3e-17	35.3
WP_012479274.1\|2291208_2292255_-	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_012479275.1\|2292275_2293025_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA
WP_099530082.1\|2293024_2293792_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_099530081.1\|2293788_2294178_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_005408286.1\|2294653_2294971_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_150359517.1\|2295329_2306234_+	transporter	NA	NA	NA	NA
WP_012479278.1\|2306290_2306734_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005412437.1\|2307109_2307484_+	DUF3592 domain-containing protein	NA	NA	NA	NA
WP_049431274.1\|2307785_2309027_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	3.0e-81	44.1
WP_080354649.1\|2309921_2310143_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_080354648.1\|2310139_2310649_+	hypothetical protein	NA	NA	NA	NA
WP_150359518.1\|2312456_2314508_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.1e-47	41.4
WP_005408298.1\|2314514_2314835_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_005408299.1\|2314946_2315546_+	recombination protein RecR	NA	NA	NA	NA
WP_005408300.1\|2315613_2315973_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_005408301.1\|2316050_2316578_-	membrane protein	NA	NA	NA	NA
WP_060380412.1\|2316574_2318524_-	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_005408303.1\|2318516_2319461_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_060380413.1\|2319463_2320417_-	AAA family ATPase	NA	NA	NA	NA
WP_099530056.1\|2320459_2322301_+	hypothetical protein	NA	NA	NA	NA
WP_012479286.1\|2322548_2323118_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_012479287.1\|2323231_2323741_+	hypothetical protein	NA	NA	NA	NA
WP_005408308.1\|2323848_2324043_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_005408309.1\|2324134_2325112_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_005408310.1\|2325190_2325973_+	hypothetical protein	NA	NA	NA	NA
WP_059033318.1\|2326133_2327078_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_005408312.1\|2327160_2327904_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	4.7e-13	32.3
WP_005408313.1\|2328056_2328296_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.6e-10	44.6
WP_012479290.1\|2328439_2329702_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_111193434.1\|2329916_2331281_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_049403323.1\|2331478_2332540_+	endolytic transglycosylase MltG	NA	NA	NA	NA
2331277:2331300	attR	NA	NA	NA	NA
WP_005412450.1\|2332536_2333202_+	dTMP kinase	W8D0J5	Erwinia_phage	5.5e-21	34.9
WP_150359519.1\|2333198_2334155_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_004146965.1\|2334151_2334505_+	pilus assembly protein PilZ	NA	NA	NA	NA
WP_143569501.1\|2334898_2336233_-	hypothetical protein	NA	NA	NA	NA
WP_099497681.1\|2336243_2338124_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_099497682.1\|2338859_2339267_+	hypothetical protein	NA	NA	NA	NA
WP_099497683.1\|2339290_2340037_+	hypothetical protein	A0A291AUW2	Sinorhizobium_phage	4.7e-29	37.3
WP_099497684.1\|2340046_2340745_+	hypothetical protein	NA	NA	NA	NA
WP_143598847.1\|2341400_2341601_-	hypothetical protein	NA	NA	NA	NA
WP_099497686.1\|2342112_2342676_-	hypothetical protein	NA	NA	NA	NA
WP_099497687.1\|2342728_2343136_-	hypothetical protein	NA	NA	NA	NA
WP_099497688.1\|2343703_2344084_+	tautomerase family protein	NA	NA	NA	NA
WP_099497689.1\|2344164_2345238_-	phage late control D family protein	D5LGY1	Escherichia_phage	1.1e-92	51.0
WP_049430174.1\|2345228_2345444_-\|tail	tail protein	NA	NA	NA	NA
WP_049430173.1\|2345427_2345895_-\|tail	phage tail protein	A4PE53	Ralstonia_virus	2.2e-08	29.6
WP_099497690.1\|2345897_2348345_-\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	3.5e-28	22.4
WP_005412456.1\|2348465_2348756_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.5e-18	58.5
WP_057501934.1\|2348836_2349340_-\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	1.4e-40	51.2
WP_012479298.1\|2349342_2350545_-\|tail	tail protein	A0A088FVH5	Escherichia_phage	6.1e-127	54.2
WP_150359520.1\|2350647_2351280_-	hypothetical protein	NA	NA	NA	NA
WP_150359521.1\|2351281_2353282_-\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	3.3e-117	42.1
WP_150359522.1\|2353289_2354069_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.2e-43	50.6
WP_005412462.1\|2354061_2354958_-\|plate	baseplate assembly protein J	V5YTH6	Pseudomonas_phage	1.9e-80	56.1
WP_005408332.1\|2354960_2355299_-\|plate	phage baseplate protein	A0A193GYY8	Enterobacter_phage	7.8e-32	62.2
WP_150359523.1\|2355351_2355942_-\|plate	phage baseplate assembly protein V	A0A193GYL5	Enterobacter_phage	1.5e-25	38.2
WP_005408334.1\|2355938_2356493_-	hypothetical protein	NA	NA	NA	NA
WP_099530044.1\|2356845_2357223_-	hypothetical protein	NA	NA	NA	NA
WP_150359524.1\|2357219_2357705_-	glycoside hydrolase family protein	D5LH07	Escherichia_phage	2.0e-41	55.0
WP_005408337.1\|2357701_2358052_-	hypothetical protein	NA	NA	NA	NA
WP_005408338.1\|2358048_2358498_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005408339.1\|2358832_2359216_-	hypothetical protein	NA	NA	NA	NA
WP_099530043.1\|2359368_2360007_-	hypothetical protein	A0A2H4J8A1	uncultured_Caudovirales_phage	2.0e-20	37.6
WP_099530042.1\|2360048_2360276_-	hypothetical protein	NA	NA	NA	NA
WP_150359525.1\|2360350_2360626_-	hypothetical protein	NA	NA	NA	NA
WP_150359526.1\|2360626_2362963_-	toprim domain-containing protein	D5LH15	Escherichia_phage	2.8e-136	43.4

DBSCAN-SWA_3

2963942 : 2972239

Vibrio_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150359636.1\|2963942_2964746_+	hypothetical protein	A0A2I7RGI7	Vibrio_phage	7.8e-30	50.0
WP_150359637.1\|2964742_2966155_+	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	4.4e-76	40.0
WP_032127469.1\|2966154_2966334_+	hypothetical protein	NA	NA	NA	NA
WP_150359638.1\|2966330_2966717_+	hypothetical protein	A0A0K0N7I1	Gordonia_phage	5.6e-18	36.7
WP_150359639.1\|2966859_2967327_+	NinB family protein	A0A1R3Y605	Salmonella_virus	2.1e-14	35.4
WP_150359640.1\|2967323_2967605_+	hypothetical protein	NA	NA	NA	NA
WP_150359641.1\|2967601_2968075_+	hypothetical protein	R9ZZU8	Cellulophaga_phage	2.7e-30	51.3
WP_150359642.1\|2968071_2968269_+	hypothetical protein	NA	NA	NA	NA
WP_049404214.1\|2968304_2968745_+	hypothetical protein	NA	NA	NA	NA
WP_150359643.1\|2968908_2969115_+	hypothetical protein	NA	NA	NA	NA
WP_150359644.1\|2969222_2969465_+	hypothetical protein	NA	NA	NA	NA
WP_150360000.1\|2969493_2970102_+	hypothetical protein	H9C189	Pectobacterium_phage	1.4e-71	60.6
WP_150359645.1\|2970132_2970606_+	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	8.1e-43	71.0
WP_150359646.1\|2970598_2972239_+	hypothetical protein	X2CY37	Brucella_phage	2.2e-63	24.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044092

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection