CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023697	Streptomyces prasinus strain ATCC 13879 chromosome, complete genome	10 crisprs	csa3,WYL,cas3,cas5,cas8c,cas7,cas4,DEDDh,Cas9_archaeal,c2c9_V-U4,DinG	1	12	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023697_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023697_1

734790-735630

TypeI

Consensus_repeat	Method
GTTGCGATCCTCGGNCGCCCCGNAGG	CRT
TTGCGATCCTCGGTCGCCCCGGA	CRISPRCasFinder
CGTTGCGATCCTCGGTCGCCCCGGAGGGCGACCGCCA	PILER-CR
AACGTGTTGCGATCCTCGGTCGCCCCGGAGGGCGACCGCCA	PILER-CR

11 spacers

csa3,cas3,cas5,cas8c,cas7

The CRISPR arrays of NZ_CP023697_1

>merge|NZ_CP023697|1|734790-735630|CRT,CRISPRCasFinder,PILER-CR,PILER-CR
GTTGCGATCCTCGGCTGCCCCGAAGGGCGACCGCCAGTGTCGTTATCGACCTGGGTTACCTGGGTCGTCTCGATGTTGCGATCCTCGGCTGCCCCGAAGGGCGACCGCCAGCGACGCGTTCCATGGCGTAGTCTGCGGGGCTCCCGCCGTTGCGATCCTCGATCGCCCCGGAGGACGACCGCCACTCTCGGCGCAGGTCATCGACGTCACCGACGCCGGGGTGTTGCGATCCTCGATCGCCCCGGAGGGCGACCGCCAGGGTGGAGGCCGCGCTGGTCGACGCCGGGCTCCTCGCGTTGCGATCCTCGGTCGCCCCGAAGGGCGACCGCCAGGTGGCCGCGGACACCACCACCGGCAAGCCGGGGCCGTTGCGATCCTCGGTCGCCCCGGAGGGCGACCGCCAGTGGAGCTGGCCGGGTAGAGCCGGTGGGCGATGCGGACGTTGCGATCCTCTGGCGCCCCGAAGGGCGACCGCCAGTGGAGCTGGCCGGGTAGAGCCGGTGGGCGATGCGGACGTTGCGATCCTCTGGCGCCCCGAAGGGCGACCGCCAGCCCGTCGGGTCCGGCGTGGTGGGAGGAGACTCCCGCCGTTGCAATCCTCGGTCACCCCGAAGGCGATCACCAGGTCATCACCTCGCTACCCACCCGCACATCGAACGGATTGCGATCCTCGGTCGCCCCGGAGGACGACCGCCAGAGATCAGCCTTGAACTCCTTCCACCACGGCGACTTGTTGCGATCCTCGGCCGCCCCGGAAGGCGACCGCCACGTGGGCACTGCGGCCGCCGTTGGGGGAGGTAAGGGTGTTGCGATCCTCGGTCGCCCCGGAGGGCGACCGCCG

>NZ_CP023697|1|1|734790-735620|CRT
GTTGCGATCCTCGGCTGCCCCGAAGG	GCGACCGCCAGTGTCGTTATCGACCTGGGTTACCTGGGTCGTCTCGAT
GTTGCGATCCTCGGCTGCCCCGAAGG	GCGACCGCCAGCGACGCGTTCCATGGCGTAGTCTGCGGGGCTCCCGCC
GTTGCGATCCTCGATCGCCCCGGAGG	ACGACCGCCACTCTCGGCGCAGGTCATCGACGTCACCGACGCCGGGGT
GTTGCGATCCTCGATCGCCCCGGAGG	GCGACCGCCAGGGTGGAGGCCGCGCTGGTCGACGCCGGGCTCCTCGC
GTTGCGATCCTCGGTCGCCCCGAAGG	GCGACCGCCAGGTGGCCGCGGACACCACCACCGGCAAGCCGGGGCC
GTTGCGATCCTCGGTCGCCCCGGAGG	GCGACCGCCAGTGGAGCTGGCCGGGTAGAGCCGGTGGGCGATGCGGAC
GTTGCGATCCTCTGGCGCCCCGAAGG	GCGACCGCCAGTGGAGCTGGCCGGGTAGAGCCGGTGGGCGATGCGGAC
GTTGCGATCCTCTGGCGCCCCGAAGG	GCGACCGCCAGCCCGTCGGGTCCGGCGTGGTGGGAGGAGACTCCCGCC
GTTGCAATCCTCGGTCACCCCGAAGG	CGATCACCAGGTCATCACCTCGCTACCCACCCGCACATCGAACGG
ATTGCGATCCTCGGTCGCCCCGGAGG	ACGACCGCCAGAGATCAGCCTTGAACTCCTTCCACCACGGCGACTT
GTTGCGATCCTCGGCCGCCCCGGAAG	GCGACCGCCACGTGGGCACTGCGGCCGCCGTTGGGGGAGGTAAGGGT
GTTGCGATCCTCGGTCGCCCCGGAGG

>NZ_CP023697|1|1|734791-735618|CRISPRCasFinder
TTGCGATCCTCGGCTGCCCCGAA	GGGCGACCGCCAGTGTCGTTATCGACCTGGGTTACCTGGGTCGTCTCGATG
TTGCGATCCTCGGCTGCCCCGAA	GGGCGACCGCCAGCGACGCGTTCCATGGCGTAGTCTGCGGGGCTCCCGCCG
TTGCGATCCTCGATCGCCCCGGA	GGACGACCGCCACTCTCGGCGCAGGTCATCGACGTCACCGACGCCGGGGTG
TTGCGATCCTCGATCGCCCCGGA	GGGCGACCGCCAGGGTGGAGGCCGCGCTGGTCGACGCCGGGCTCCTCGCG
TTGCGATCCTCGGTCGCCCCGAA	GGGCGACCGCCAGGTGGCCGCGGACACCACCACCGGCAAGCCGGGGCCG
TTGCGATCCTCGGTCGCCCCGGA	GGGCGACCGCCAGTGGAGCTGGCCGGGTAGAGCCGGTGGGCGATGCGGACG
TTGCGATCCTCTGGCGCCCCGAA	GGGCGACCGCCAGTGGAGCTGGCCGGGTAGAGCCGGTGGGCGATGCGGACG
TTGCGATCCTCTGGCGCCCCGAA	GGGCGACCGCCAGCCCGTCGGGTCCGGCGTGGTGGGAGGAGACTCCCGCCG
TTGCAATCCTCGGTCACCCCGAA	GGCGATCACCAGGTCATCACCTCGCTACCCACCCGCACATCGAACGGA
TTGCGATCCTCGGTCGCCCCGGA	GGACGACCGCCAGAGATCAGCCTTGAACTCCTTCCACCACGGCGACTTG
TTGCGATCCTCGGCCGCCCCGGA	AGGCGACCGCCACGTGGGCACTGCGGCCGCCGTTGGGGGAGGTAAGGGTG
TTGCGATCCTCGGTCGCCCCGGA

>NZ_CP023697|1|1|734937-735266|PILER-CR
CGTTGCGATCCTCGATCGCCCCGGAGGACGACCGCCA	CTCTCGGCGCAGGTCATCGACGTCACCGACGCCGGGG
TGTTGCGATCCTCGATCGCCCCGGAGGGCGACCGCCA	GGGTGGAGGCCGCGCTGGTCGACGCCGGGCTCCTCG
CGTTGCGATCCTCGGTCGCCCCGAAGGGCGACCGCCA	GGTGGCCGCGGACACCACCACCGGCAAGCCGGGGC
CGTTGCGATCCTCGGTCGCCCCGGAGGGCGACCGCCA	GTGGAGCTGGCCGGGTAGAGCCGGTGGGCGATGCGGA
CGTTGCGATCCTCTGGCGCCCCGAAGGGCGACCGCCAGTGGAGCTGGCCGGGTAGAGCCGGTGGGCGATGCGGACGTTGCGATCCTCTGGCGCCCCGAAGGGCGACCGCCAGCCCGTCGGGTCCGGCGTGGTGGGAGGAGACTCCCGCCGTTGCAATCCTCGGTCACCCCGAAGGCGATCACCAGGTCATCACCTCGCTACCCACCCGCACATCGAACGGATTGCGATCCTCGGTCGCCCCGGAGGACGACCGCCA	GAGATCAGCCTTGAACTCCTTCCACCACGGC
GACTTGTTGCGATCCTCGGCCGCCCCGGAAGGCGACCGCCA	CGTGGGCACTGCGGCCGCCGTTGGGGGAGGTA


>NZ_CP023697|1|2|735445-735630|PILER-CR
	CTCTCGGCGCAGGTCATCGACGTCACCGACGCCGGGG
TGTTGCGATCCTCGATCGCCCCGGAGGGCGACCGCCA	GGGTGGAGGCCGCGCTGGTCGACGCCGGGCTCCTCG
CGTTGCGATCCTCGGTCGCCCCGAAGGGCGACCGCCA	GGTGGCCGCGGACACCACCACCGGCAAGCCGGGGC
CGTTGCGATCCTCGGTCGCCCCGGAGGGCGACCGCCA	GTGGAGCTGGCCGGGTAGAGCCGGTGGGCGATGCGGA
CGTTGCGATCCTCTGGCGCCCCGAAGGGCGACCGCCAGTGGAGCTGGCCGGGTAGAGCCGGTGGGCGATGCGGACGTTGCGATCCTCTGGCGCCCCGAAGGGCGACCGCCAGCCCGTCGGGTCCGGCGTGGTGGGAGGAGACTCCCGCCGTTGCAATCCTCGGTCACCCCGAAGGCGATCACCAGGTCATCACCTCGCTACCCACCCGCACATCGAACGGATTGCGATCCTCGGTCGCCCCGGAGGACGACCGCCA	GAGATCAGCCTTGAACTCCTTCCACCACGGC
GACTTGTTGCGATCCTCGGCCGCCCCGGAAGGCGACCGCCA	CGTGGGCACTGCGGCCGCCGTTGGGGGAGGTA
AGGGTGTTGCGATCCTCGGTCGCCCCGGAGGGCGACCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023697.1\|WP_167532525.1\|733811_734717_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP023697.1\|WP_167532515.1\|743145_744090_-\|transposase	unknown	unknown	gnl\|CDD\|372577
NZ_CP023697.1\|WP_055605549.1\|748278_749025_-\|phage-Gp37/Gp68-family-protein	unknown	unknown	gnl\|CDD\|377854
NZ_CP023697.1\|WP_055606367.1\|728333_728708_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_167532524.1\|732180_732588_-\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP023697.1\|WP_150475066.1\|733503_733809_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP023697.1\|WP_055606369.1\|730877_731978_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP023697.1\|WP_079061224.1\|735685_737974_-\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP023697.1\|WP_167532523.1\|732013_732139_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP023697.1\|WP_055606365.1\|726725_727742_-\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|366736
NZ_CP023697.1\|WP_055605551.1\|744196_744967_-\|IS5/IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372577
NZ_CP023697.1\|WP_055606363.1\|723681_724710_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176246
NZ_CP023697.1\|WP_055606366.1\|727738_727999_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_079061226.1\|738292_739003_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP023697.1\|WP_079060773.1\|747055_748234_+\|three-Cys-motif-partner-protein-TcmP	unknown	unknown	gnl\|CDD\|275267
NZ_CP023697.1\|WP_055606368.1\|728899_729274_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP023697.1\|WP_141665722.1\|746804_747023_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_167532515.1\|742091_743036_-\|transposase	unknown	unknown	gnl\|CDD\|372577
NZ_CP023697.1\|WP_055609827.1\|740894_741764_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP023697.1\|WP_055609826.1\|739004_740837_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245

Protein	Function_ID	Function_description	E-value
NZ_CP023697.1\|WP_167532525.1\|733811_734717_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	7.23771e-64
NZ_CP023697.1\|WP_167532515.1\|743145_744090_-\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.85014e-22
NZ_CP023697.1\|WP_055605551.1\|744196_744967_-\|IS5/IS1182-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.02184e-14
NZ_CP023697.1\|WP_167532524.1\|732180_732588_-\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	6.69952e-14
NZ_CP023697.1\|WP_150475066.1\|733503_733809_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	3.04836e-13
NZ_CP023697.1\|WP_055606369.1\|730877_731978_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.79677e-17
NZ_CP023697.1\|WP_079061224.1\|735685_737974_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.03008e-53
NZ_CP023697.1\|WP_167532523.1\|732013_732139_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.00261932
NZ_CP023697.1\|WP_055606365.1\|726725_727742_-\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	2.69999e-21
NZ_CP023697.1\|WP_055606363.1\|723681_724710_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176246	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	3.99817e-164
NZ_CP023697.1\|WP_055609826.1\|739004_740837_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	4.91862e-98
NZ_CP023697.1\|WP_079060773.1\|747055_748234_+\|three-Cys-motif-partner-protein-TcmP	gnl\|CDD\|275267	TIGR04474, conserved_hypothetical_protein, three-Cys-motif partner protein. Members of this family occur regularly as a partner to as a member of family pfam07505, which has been called a phage protein but which seems to occur also in other contexts. Members average about 400 residues in length, but the conserved region covered by the model averages 260 residues and excludes the C-terminus. Conserved motifs suggest enzymatic activity. Note that its frequent partner protein (see pfam07505) has a three-cysteine motif that resembles the Cx3CxxC motif of radical SAM proteins, and that in one branch (see TIGR04471) actually becomes Cx3CxxC. We suggest the name three-Cys-motif partner protein (tcmP), and renaming pfam07505 to three-Cys-motif family protein.	2.19219e-30
NZ_CP023697.1\|WP_055606368.1\|728899_729274_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.19445e-12
NZ_CP023697.1\|WP_055605549.1\|748278_749025_-\|phage-Gp37/Gp68-family-protein	gnl\|CDD\|377854	pfam07505, DUF5131, Protein of unknown function (DUF5131). This is a family of bacterial and phage proteins of unknown function. There are three highly conserved cysteine residues in the disposition, Cx6Cxxc, amongst many highly conserved residues.	3.4535e-146
NZ_CP023697.1\|WP_167532515.1\|742091_743036_-\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.85014e-22
NZ_CP023697.1\|WP_055609827.1\|740894_741764_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.54629e-116
NZ_CP023697.1\|WP_079061226.1\|738292_739003_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	8.5538e-68

>NZ_CP023697.1|WP_167532525.1|733811_734717_+|IS3-family-transposase
MRYAFIDAERATETNPGGHSVALLCRILGVSRSGYYAYLATREAARERARRQDELVTEIRRLHTTSSQAYGSPRITAALRRQGQRVNHKRVERLMREHGISGVTRRRRRGLTRADRTALASPDLVGRDFTAAEPGTKLVGDITYLPTLAGWWYLATVIDLATREVVGYAMADHHRAGLVVDALRMAAGRGGLKEGCITHSDRGAEYTSREYRALVKELGLRQSMGRTGSCYDNAAAESFFGLLKAEIGTTVWESHEQARADVFHFIEVEYNRTRLRKHPVYGYVTPLETRALTAQALAPAA
>NZ_CP023697.1|WP_150475066.1|733503_733809_+|transposase
MSKKSNTSKRYTAEFKRDAVALVHSSGKTVTEVARQIGVSPEGLRNWVNQDKADRGQGPAGTLTSDEKEELRRLRRENREQQQTIEVLKKAAAFFARESTK
>NZ_CP023697.1|WP_167532524.1|732180_732588_-|WhiB-family-transcriptional-regulator
MKDPDLFFPGTLADEQRLRLAKGICSSCAVREACLEAALEYGDAAGIRGGLTEEERRAIRHRFELRCDPVRVAAALAGRDVYLTQPERQELIRWAAESRTSIPQLARVLKVSEAHVKKLLRQERRANAHSRAASG
>NZ_CP023697.1|WP_167532523.1|732013_732139_-|helix-turn-helix-domain-containing-protein
MSRRWMYRESRRHGLPRYYFGGKLRFKIIDLDKWAQQQKVT
>NZ_CP023697.1|WP_055606369.1|730877_731978_+|tyrosine-type-recombinase/integrase
MGSFFKSCACVRQNRCSHPYSIRYRDASGCQREETGHATQQAALDRLTKVYKEKRSTPRAQADLKREIGKQRFGEYSSTWLTRQRHYAPGSVRAVRQVLNSQILPVLESRRMKTFTATVVDDFIMSMEERSVGLAAQQNAFDTLKKILLDARRRGGITEDPFEGVIPPEYTPRKIDIPSLDEIHELKSASSDGLRLVIDLMSGCGLRNGEAFAANLERMVADDVYRITEQIEGKMRRRAPLKHRKFGEFRETPMPWAVRESLLRYEKEHGTDANGYLLRTQRSPYWAHTTLEYQWGAAKKRAGVTRRLTTYSLRHFFASNCLTKGIPITDVAEWMGHRNINMTFKIYRHLMPASIGRAAKLLNEGL
>NZ_CP023697.1|WP_055606368.1|728899_729274_+|winged-helix-turn-helix-transcriptional-regulator
MQVPLYQAKAEFFRMLGHPVRIRVLELLQHGPVPVRELLSVIEIEPSNLSQQLAVLRRSGIVISIRDGSTVSYALAGGDVAELLRAARRILTELLAGQNELLAELRHTEGSAQAGSSASPPPGR
>NZ_CP023697.1|WP_055606367.1|728333_728708_+|hypothetical-protein
MLTVETSLKEAMASIEGSVAVALVDYTSGMALGMLGGGKDLDLTVAAAGNTDVIRAKVRTMEMLGLKDDIEDVLITLGSQYHLLRLIRGRGGNGLFLYLILDKGRANLAMARHQLRRIEAELEL
>NZ_CP023697.1|WP_055606366.1|727738_727999_-|hypothetical-protein
MPLPAAGAVPLNVAVRTTTGRTEIIRTEPVAYDEQQLRRVVDLLDGRAGHWGARSAAARPGIATMERKHRTARRGVAPVSSDKEPA
>NZ_CP023697.1|WP_055606365.1|726725_727742_-|aminoglycoside-phosphotransferase-family-protein
MSPENFDPAVAALLSAVAVAPADVVECAPLSGGTYNSLLRVVLRDGRRWIVKRPPSPRSGSTLRYEHDLLRGEASYYTAVRDLPGVPVPRLVHVETSAEPPVVSGLVMTECPGVPWHEADASLTPGERARSRRELGEAVARLHTVTGSEFGYPARPFGPAAADWRSAFTAMTDAVLNDAVVYGVELPRPVEEVREVIAAAGDVLDEVTRPVLVHFDLWQGNLLLAGAEGARGLSGVIDAERMFWGDPVAEFVSLSLFDDIEKDADFLAGYAAAGGDATFTDSVRLRLELYRCYLYLIMLVEAVPRRYSSEQSAWTRRHVGGHLTASLDAVASAPAGRR
>NZ_CP023697.1|WP_055606363.1|723681_724710_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MRALVYHGPGKIAWDKVMDPVIEDPTDALVRVDATTVCGTDLHILRGELPEVKPGTVLGHEAVGEVVAVGHEVHSVGPGDQVIVSSVTACGHCPSCRDNAFGQCHGGGGWILGGLINGTQAEFVRVPFADYSTRRTPGTLALDDAVLFSEVLPTAYEVGVRNGHVGPGDTVVIVGAGPVGLAAIMTARIYSPRRIIAVDLSSPRLEAARRLGADAAESPGRLMADLADGPGADVVIEAAGDPDSFVLCTRAVRSGGHIANIGMHGRPATLHLEALWRKNVTISTGQVDTSSTPWLLDLVTSGRLHITPLVTHTLGLGRTEDAYEVFSHGTETGALKVVLHRD
>NZ_CP023697.1|WP_079061224.1|735685_737974_-|CRISPR-associated-endonuclease-Cas3''
MPVPEGRLVAHSPGHQGTWHWYEDHARGTGELARRFAEPWRGGDLAYRLGRDHDTGKGACAWQEGLIEEATTGRKTRRPPHNDAGALLFARAAEPSPALLPCAGVIEGHHTGLSAWSEVRLRLKALMADSSEADEAIHRVTAVMPEILDDSCPAAPDWLDPRNKIAVEMLVRMTYSAVVDADRLDTAAHFRPGTHIRPHVGMPELWERYEARRQEALAERQRSKGASWLDKLRENVYQEALEAAVGKPGVYRLHLPTGAGKTFTGGGFALRHASLHGLRRVIVAVPFISITEQNAAEYRSLLDPEQGPLVVLEHHSAVNVEAPQSASPSTNVRHGQKGGQPNRWAKLATENWDAPFIVTTTVRLIETIFGNTPWATRRLHRLANSVIVLDEVQALPDRLLTPILSGLRELVEHYGVTLVLSSATQPELAALNPWRSGLPQRDVVADPAPLFKQLRRVRYEWRTGPEVTLASIAAEAAEHDQALVVVNGTKDASQVHRIWLSTNRDEDPGVLHLSTRMTGGHRRETIQATKQRLEECLDTLLVSTSLIEAGVNLDFSRGYRARSTPESEQQAAGRVNREGKRPAKDSVMTIFDPRDGLNPEVVYNTCAIAAASRRFGDGLADPDDLDVLRSYYQHRYRLQAGQHSEDPNGATGEVIEALRAKLHYPEVARRMRIVDNEHSVAVVVIRPRLAEETRRAAQKAVDQLRRGLPTPATYRTLQDHMASIPQRELETAINTGHAAEIAGDLYEWTGPYHPQRGIEPAP
>NZ_CP023697.1|WP_079061226.1|738292_739003_+|type-I-C-CRISPR-associated-protein-Cas5
MEAWGPLACFTRPELKVERVSYPTMTPSAARGLLEAIFWKPEMTYRVERIEQLKPVRWTRFRRNEVNNSIITKNAYESLRANNGYRYDVAEDRGQRVTVALSDVAYRIHATIHATDRCTAPLPKYRDQFDRRLVRGACYEQPHFGCREFAAFFGPRGSAEEAGVVTAADQAGIPPIDELGLMLHHIEYLPKDKERYHWFRASLEHGVLHVPDRPLAPAEVSGMPGAGGRASAEEVA
>NZ_CP023697.1|WP_055609826.1|739004_740837_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MLLQSLVQQADSRQGDTAEYYLARRVMWQIDLSSTGIGNAEPLVIDLRQEQRRITAPYTGRSGSKPAPILFADTAQFALAHPGLVKGPDGEKVLSTNSADVTKARTRHAAYRDLVTSWCNDHPHLPQAQAVAAWLNSHAPTAWPLEMDKDHLVAISLDGEWVHDLPEAKSWWAQKVKKAKSGKPGKANQGLCLVCGHVMPLLSTLPVPIKGIPNSGMNTQLVCLNQPAHFRAGTKQLGATPICVDCGTKSATALNTLLADPEHRAFADDSAIVWWTRDPDTDTAMWTLHDPQPEEVAQLIAGVRHPRRGRDALAVLDEDAFHALTLRVNTNRVIVADWITIPVPELKRRLGTWFADQQTWDGWNNTYTYWSVWRLALSCARWDKRKNKYVDTTVPKHLQADLTKAALHGAAPPAHLLPVLLQRIRADHHLDRPRLALLRLALIRTTTRHKELCVPQLNPQSTEPGYVCGRIMAMLEAIQRKAMPKVNTTITDKYLSTAVVSPRAVLTRLRIGARPHLRTIARTSGPAAKAMDGRLRDAFDLLDTIPAHLSTEQQALFILGYDHQRAHSARAAAEAIKAREAGKELAAGQQADALPEASTEDADSSDNTLW
>NZ_CP023697.1|WP_055609827.1|740894_741764_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTNAHLDPTRKHDYVFLIDVKDGNPNGDPDAGGMPRTDPITGQGLITDVALKRKIRNTITLVHQGQPGFEMYVEQGVALNPQIQRAYIEGGAKEGETATAQEWMIRNFWDVRLFGAVMSVGDQKKHAGRARGPMQLTFSRSIDPVTPLEAGITRVAPNKPEDLAKGKVTEMGNKHYVPYGLYRGHGFYSGALGAKAKVTPEDLAAYWQALTMMFDHDRASSRGEMAIRGLYVFSHDDAYGRAPAHKLFDLIRIKPLGHSEARSWDDYADRITIDEDNVPTGVALTRLID
>NZ_CP023697.1|WP_167532515.1|742091_743036_-|transposase
MICVVGNRARAAIIRSQRITGLTPDVISELAAEIGPLWHERHQAVLTSRPRRRAVGAGAKHKLVFIDRLLATLVHLRHGATHDVLACWFGVDRSTITRAIGEVRPLLAERGCTVAPDVRLRTLAEVIDHLGASGQTGIIDGTEVRVRRPAAGRKDREKFISGKNKQNAVKSMVVTDAVGRLLFCSPAVPASCADITHARKLGLVGLLADGPAVEILADAGYQGLGAQTGGRVVTPPHRKFKKNPPEWYEEMYERQRKAHSSRRIRVEHGIGHLKNWRALARHHGCREHMSDIIQAVAGLLSHQQAATMAGGTRT
>NZ_CP023697.1|WP_167532515.1|743145_744090_-|transposase
MICVVGNRARAAIIRSQRITGLTPDVISELAAEIGPLWHERHQAVLTSRPRRRAVGAGAKHKLVFIDRLLATLVHLRHGATHDVLACWFGVDRSTITRAIGEVRPLLAERGCTVAPDVRLRTLAEVIDHLGASGQTGIIDGTEVRVRRPAAGRKDREKFISGKNKQNAVKSMVVTDAVGRLLFCSPAVPASCADITHARKLGLVGLLADGPAVEILADAGYQGLGAQTGGRVVTPPHRKFKKNPPEWYEEMYERQRKAHSSRRIRVEHGIGHLKNWRALARHHGCREHMSDIIQAVAGLLSHQQAATMAGGTRT
>NZ_CP023697.1|WP_055605551.1|744196_744967_-|IS5/IS1182-family-transposase
MSGLITASEPSWIAPFTGLSPRQFGRLITALRREGADPVRKGRPWSLPLEDRVLLVAAYWRTNLTLRQLAPLFGVSKSAADRIIDHLGPVLALQQRKRFRKDTVLIVDGTLVPTRDHAVAEQSKNYRYSTNHQVVIDADSRLVVAVGRPLPGNRNDCKAWELSGAKDAVGTTTVIADGGYRGTGLVIPHRRERGQSELPDWKKEHNASHRKVRARVEHVFARMKGWKILRDCRLKGDGVHHAMLGIARLHNLVLAG
>NZ_CP023697.1|WP_141665722.1|746804_747023_+|hypothetical-protein
MIEQIFFDAEDDVLRHAVTVYYGGHPYVISHQPTPEEPARREQPAPCCFALPVAQSGSRGPLARFPPMPHHL
>NZ_CP023697.1|WP_079060773.1|747055_748234_+|three-Cys-motif-partner-protein-TcmP
MSSGTGGGYWADKALPSVFKHDLLKRYLPQFGGMTGTRSRDKRVVYLDGYAGEGRYENGDPASGEIALQVAKDLRTSAGLTLECFFCEPQAKSFDRLHEVVHQYLARGVRAHAHRGEVDGILDRVVERAVRESLFLFLDPTGLVLPQDRLVDVLAQKRPQKWPPTELLMNFSMMAVWRLGGHVRSPKGNEKSLQRFDDVCGGTWWREYFADAVASHDKDGAAEDAIEAVAAEYARRLERRTGMLVRSVPVSHSPRKRAVYRLVFATRSPYGLWVFGDTVARARATWWETLEEREEDDGLFSMASVTRPDPKEVEAKAVPEIAENLAKLLARTRRPVKLVDHTLEVFGAFYGQVTEPVVRQAVRLLHEQGGTPSNGVGVRTREITLYPGNLAA
>NZ_CP023697.1|WP_055605549.1|748278_749025_-|phage-Gp37/Gp68-family-protein
MSDRSAIEWTEATWNPTTGCDRVSPGCDNCYALTLAKRLKAMGAAKYQNDGDPRTSGPGFDVTLHPDALDVPYGWKSPRTVFVNSMSDLFHARVPLDFVRQVFQVMADTPQHTYQVLTKRARRLRQVAPKLDWPDNVWMGVSVETEKELARVDDLREVPAAVRFLSCEPLLGPLPGLHLDNIHWVIAGGESGPGHRPLDEAWATQIRDTCQDAGVAFFFKQWGGRTPKAGGRLLEGRTWDQMPLPVAA

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Crispr_ID: NZ_CP023697_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023697_2

745108-746228

TypeI

Consensus_repeat	Method
GCGGTCGCCTTCCGGGGCGACCGAGGATC	CRISPRCasFinder
GCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC	PILER-CR
GCGGTCGCCTTCCGGGGCGACCGAGGATC	CRISPRCasFinder

13 spacers

cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP023697_2

>merge|NZ_CP023697|2|745108-746228|CRISPRCasFinder,PILER-CR,CRISPRCasFinder
GCGGCCGTCCTTCGGGGCGGCCGAGGATCGCAACGGCACCAAAGCTGAAGAACTGGGAGATGCGTTGTTCGCGCTGGCGGTCGCCCTCCGGGGCGACCGAGAATCACAACTCCTGCTGCCGGTAGATGCTGACTTCGGCGGCTTCCTGGCAGTCGCCCTTTGGTGTGACCGAGGATCGCAACAACGCAGCGAGGCATATCGAGTTGGGCTCCAGCGCCTGGTGGTCGCCCTTCCGAGTGACCGAGGATCGCAACCCGATCAGCATCTACGCGCCGGGCGCGTACCAGTCGTGGCGGTCGCTCTCCGGGGCGGCCGAGGATCGCAACGACAGCGACGGGGCGTACGAAGAGGACGTCATGCAGCGTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAACCAGCCCGCCTCGGAACCGAACGTAGAGGACGCCTCGCTGGCGGTCGCCCCCCAGGGCGGCCGAAGATCGCAACAATCTTGATCCCAAGCAGGTCACCATTGCAGCCTTGTAGCGGTCGTCCTCCGGGACGACCGAGGATCGCAACGTCGGGTTCGGTCTGGACTGGTCGACGGAGAAGCATGGCGGTCGCCCTCCGGGTAATCGGGGATCACAACCTCATCTACCCAGCTGGCTTTCTGGTCATCGGTCGTATCGCGGTCGCCTTCCGGGGCGACCGAGGATCGCAACCACGAGCTCACCCGCGAGTTCGCCGAAGTCGACAACTGGCGGTCGCCCTCCGGGGCGACCGAGGATCACAACATGCCCGGCAAGTACGACAGCGGCGGTTACCTGCAGCTGGCGGTTGCCCTCCGGGGTGACCGAGAATCGCAACTCCAGGTACTTCGCCGTCCTGCCCGGCGCGTGCCGCTGGCGGTCGCCCTCTGGGGCGACCGAGGATCGCAACCAGCGCGGCTTCTACGTGTCCGAGGGAGAGATCACCGTGGTGGTCGCCCTCTACGGTGACCGAGGATCGCAACCGCTCCACCAGCTCGACGAGCTGCTCAGCCAGCTCGACTGGCGGTCGCCCTTCAAGGCGACCGAGAATCGCAACGGCGTCCTCACCAAAGCCGCGCAGACCCTGCCCTCGTCTGGCGGTCGCCCCCTGGGGCGACCGAGGATC

>NZ_CP023697|2|2|745108-745648|CRISPRCasFinder
GCGGCCGTCCTTCGGGGCGGCCGAGGATC	GCAACGGCACCAAAGCTGAAGAACTGGGAGATGCGTTGTTCGCGCTG
GCGGTCGCCCTCCGGGGCGACCGAGAATC	ACAACTCCTGCTGCCGGTAGATGCTGACTTCGGCGGCTTCCTG
GCAGTCGCCCTTTGGTGTGACCGAGGATC	GCAACAACGCAGCGAGGCATATCGAGTTGGGCTCCAGCGCCTG
GTGGTCGCCCTTCCGAGTGACCGAGGATC	GCAACCCGATCAGCATCTACGCGCCGGGCGCGTACCAGTCGTG
GCGGTCGCTCTCCGGGGCGGCCGAGGATC	GCAACGACAGCGACGGGGCGTACGAAGAGGACGTCATGCAGCGTG
GCGGTCGCCCTTCGGGACGACCGAGGATC	GCAACCAGCCCGCCTCGGAACCGAACGTAGAGGACGCCTCGCTG
GCGGTCGCCCCCCAGGGCGGCCGAAGATC	GCAACAATCTTGATCCCAAGCAGGTCACCATTGCAGCCTTGTA
GCGGTCGTCCTCCGGGACGACCGAGGATCGCAACGTCGGGTTCGGTCTGGACTGGTCGACGGAGAAGCATGGCGGTCGCCCTCCGGGTAATCGGGGATCACAACCTCATCTACCCAGCTGGCTTTCTGGTCATCGGTCGTATCGCGGTCGCCTTCCGGGGCGACCGAGGATC	GCAACCACGAGCTCACCCGCGAGTTCGCCGAAGTCGACAACTG
GCGGTCGCCCTCCGGGGCGACCGAGGATC	ACAACATGCCCGGCAAGTACGACAGCGGCGGTTACCTGCAGCTG
GCGGTTGCCCTCCGGGGTGACCGAGAATC	GCAACTCCAGGTACTTCGCCGTCCTGCCCGGCGCGTGCCGCTG
GCGGTCGCCCTCTGGGGCGACCGAGGATC	GCAACCAGCGCGGCTTCTACGTGTCCGAGGGAGAGATCACCGTG
GTGGTCGCCCTCTACGGTGACCGAGGATC	GCAACCGCTCCACCAGCTCGACGAGCTGCTCAGCCAGCTCGACTG
GCGGTCGCCCTTCAAGGCGACCGAGAATC	GCAACGGCGTCCTCACCAAAGCCGCGCAGACCCTGCCCTCGTCTG


>NZ_CP023697|2|3|745619-746012|PILER-CR
GCGGTCGTCCTCCGGGACGACCGAGGATCGCAAC	GTCGGGTTCGGTCTGGACTGGTCGACGGAGAAGCATG
GCGGTCGCCCTCCGGGTAATCGGGGATCACAACC	TCATCTACCCAGCTGGCTTTCTGGTCATCGGTCGTATCGCGGTCGCCTTCCGGGGC
GACCGAGGATCGCAACCACGAGCTCACCCGCGAG	TTCGCCGAAGTCGACAACTGGCGGTCGCCCTCCGGGGC
GACCGAGGATCACAACATGCCCGGCAAGTACGAC	AGCGGCGGTTACCTGCAGCTGGCGGTTGCCCTCCGGGGT
GACCGAGAATCGCAACTCCAGGTACTTCGCCGTC	CTGCCCGGCGCGTGCCGCTGGCGGTCGCCCTCTGGGGC
GACCGAGGATCGCAAC

>NZ_CP023697|2|3|745762-746228|CRISPRCasFinder
	GCAACGGCACCAAAGCTGAAGAACTGGGAGATGCGTTGTTCGCGCTG
GCGGTCGCCCTCCGGGGCGACCGAGAATC	ACAACTCCTGCTGCCGGTAGATGCTGACTTCGGCGGCTTCCTG
GCAGTCGCCCTTTGGTGTGACCGAGGATC	GCAACAACGCAGCGAGGCATATCGAGTTGGGCTCCAGCGCCTG
GTGGTCGCCCTTCCGAGTGACCGAGGATC	GCAACCCGATCAGCATCTACGCGCCGGGCGCGTACCAGTCGTG
GCGGTCGCTCTCCGGGGCGGCCGAGGATC	GCAACGACAGCGACGGGGCGTACGAAGAGGACGTCATGCAGCGTG
GCGGTCGCCCTTCGGGACGACCGAGGATC	GCAACCAGCCCGCCTCGGAACCGAACGTAGAGGACGCCTCGCTG
GCGGTCGCCCCCCAGGGCGGCCGAAGATC	GCAACAATCTTGATCCCAAGCAGGTCACCATTGCAGCCTTGTA
GCGGTCGTCCTCCGGGACGACCGAGGATCGCAACGTCGGGTTCGGTCTGGACTGGTCGACGGAGAAGCATGGCGGTCGCCCTCCGGGTAATCGGGGATCACAACCTCATCTACCCAGCTGGCTTTCTGGTCATCGGTCGTATCGCGGTCGCCTTCCGGGGCGACCGAGGATC	GCAACCACGAGCTCACCCGCGAGTTCGCCGAAGTCGACAACTG
GCGGTCGCCCTCCGGGGCGACCGAGGATC	ACAACATGCCCGGCAAGTACGACAGCGGCGGTTACCTGCAGCTG
GCGGTTGCCCTCCGGGGTGACCGAGAATC	GCAACTCCAGGTACTTCGCCGTCCTGCCCGGCGCGTGCCGCTG
GCGGTCGCCCTCTGGGGCGACCGAGGATC	GCAACCAGCGCGGCTTCTACGTGTCCGAGGGAGAGATCACCGTG
GTGGTCGCCCTCTACGGTGACCGAGGATC	GCAACCGCTCCACCAGCTCGACGAGCTGCTCAGCCAGCTCGACTG
GCGGTCGCCCTTCAAGGCGACCGAGAATC	GCAACGGCGTCCTCACCAAAGCCGCGCAGACCCTGCCCTCGTCTG
GCGGTCGCCCCCTGGGGCGACCGAGGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023697.1\|WP_167532525.1\|733811_734717_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP023697.1\|WP_167532515.1\|743145_744090_-\|transposase	unknown	unknown	gnl\|CDD\|372577
NZ_CP023697.1\|WP_055605553.1\|755254_755605_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055605548.1\|752983_753472_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|187753
NZ_CP023697.1\|WP_055605554.1\|753547_754792_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055605551.1\|744196_744967_-\|IS5/IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372577
NZ_CP023697.1\|WP_167532524.1\|732180_732588_-\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP023697.1\|WP_150475066.1\|733503_733809_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP023697.1\|WP_079061224.1\|735685_737974_-\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP023697.1\|WP_079060773.1\|747055_748234_+\|three-Cys-motif-partner-protein-TcmP	unknown	unknown	gnl\|CDD\|275267
NZ_CP023697.1\|WP_055605556.1\|750657_752154_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379262
NZ_CP023697.1\|WP_079060772.1\|749902_750661_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319809
NZ_CP023697.1\|WP_055609826.1\|739004_740837_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP023697.1\|WP_167532515.1\|742091_743036_-\|transposase	unknown	unknown	gnl\|CDD\|372577
NZ_CP023697.1\|WP_055605555.1\|752594_752933_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP023697.1\|WP_055605549.1\|748278_749025_-\|phage-Gp37/Gp68-family-protein	unknown	unknown	gnl\|CDD\|377854
NZ_CP023697.1\|WP_167532502.1\|755826_756000_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225922
NZ_CP023697.1\|WP_141665722.1\|746804_747023_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055609827.1\|740894_741764_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP023697.1\|WP_079061226.1\|738292_739003_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534

Protein	Function_ID	Function_description	E-value
NZ_CP023697.1\|WP_167532525.1\|733811_734717_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	7.23771e-64
NZ_CP023697.1\|WP_167532515.1\|743145_744090_-\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.85014e-22
NZ_CP023697.1\|WP_055605548.1\|752983_753472_-\|SAM-dependent-methyltransferase	gnl\|CDD\|187753	cd09281, UPF0066, Escherichia coli YaeB and related proteins. Uncharacterized protein family UPF0066. This domain includes Escherichia coli YeaB, Archeoglobus fulgidus AF0241, and Agrobacterium tumefaciens VirR. Proteins with this domain are probable S-adenosylmethionine-dependent methyltransferases but they have not been functionally characterized and the substrate is unknown.	3.67948e-40
NZ_CP023697.1\|WP_055605551.1\|744196_744967_-\|IS5/IS1182-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.02184e-14
NZ_CP023697.1\|WP_167532524.1\|732180_732588_-\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	6.69952e-14
NZ_CP023697.1\|WP_150475066.1\|733503_733809_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	3.04836e-13
NZ_CP023697.1\|WP_079061224.1\|735685_737974_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.03008e-53
NZ_CP023697.1\|WP_079060773.1\|747055_748234_+\|three-Cys-motif-partner-protein-TcmP	gnl\|CDD\|275267	TIGR04474, conserved_hypothetical_protein, three-Cys-motif partner protein. Members of this family occur regularly as a partner to as a member of family pfam07505, which has been called a phage protein but which seems to occur also in other contexts. Members average about 400 residues in length, but the conserved region covered by the model averages 260 residues and excludes the C-terminus. Conserved motifs suggest enzymatic activity. Note that its frequent partner protein (see pfam07505) has a three-cysteine motif that resembles the Cx3CxxC motif of radical SAM proteins, and that in one branch (see TIGR04471) actually becomes Cx3CxxC. We suggest the name three-Cys-motif partner protein (tcmP), and renaming pfam07505 to three-Cys-motif family protein.	2.19219e-30
NZ_CP023697.1\|WP_055605556.1\|750657_752154_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	1.84023e-06
NZ_CP023697.1\|WP_079060772.1\|749902_750661_-\|HAD-hydrolase-like-protein	gnl\|CDD\|319809	cd07506, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.47239e-24
NZ_CP023697.1\|WP_055609826.1\|739004_740837_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	4.91862e-98
NZ_CP023697.1\|WP_055605555.1\|752594_752933_+\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	1.91112e-13
NZ_CP023697.1\|WP_055605549.1\|748278_749025_-\|phage-Gp37/Gp68-family-protein	gnl\|CDD\|377854	pfam07505, DUF5131, Protein of unknown function (DUF5131). This is a family of bacterial and phage proteins of unknown function. There are three highly conserved cysteine residues in the disposition, Cx6Cxxc, amongst many highly conserved residues.	3.4535e-146
NZ_CP023697.1\|WP_167532502.1\|755826_756000_+\|hypothetical-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	8.50804e-05
NZ_CP023697.1\|WP_167532515.1\|742091_743036_-\|transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.85014e-22
NZ_CP023697.1\|WP_055609827.1\|740894_741764_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.54629e-116
NZ_CP023697.1\|WP_079061226.1\|738292_739003_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	8.5538e-68

>NZ_CP023697.1|WP_055605551.1|744196_744967_-|IS5/IS1182-family-transposase
MSGLITASEPSWIAPFTGLSPRQFGRLITALRREGADPVRKGRPWSLPLEDRVLLVAAYWRTNLTLRQLAPLFGVSKSAADRIIDHLGPVLALQQRKRFRKDTVLIVDGTLVPTRDHAVAEQSKNYRYSTNHQVVIDADSRLVVAVGRPLPGNRNDCKAWELSGAKDAVGTTTVIADGGYRGTGLVIPHRRERGQSELPDWKKEHNASHRKVRARVEHVFARMKGWKILRDCRLKGDGVHHAMLGIARLHNLVLAG
>NZ_CP023697.1|WP_167532515.1|743145_744090_-|transposase
MICVVGNRARAAIIRSQRITGLTPDVISELAAEIGPLWHERHQAVLTSRPRRRAVGAGAKHKLVFIDRLLATLVHLRHGATHDVLACWFGVDRSTITRAIGEVRPLLAERGCTVAPDVRLRTLAEVIDHLGASGQTGIIDGTEVRVRRPAAGRKDREKFISGKNKQNAVKSMVVTDAVGRLLFCSPAVPASCADITHARKLGLVGLLADGPAVEILADAGYQGLGAQTGGRVVTPPHRKFKKNPPEWYEEMYERQRKAHSSRRIRVEHGIGHLKNWRALARHHGCREHMSDIIQAVAGLLSHQQAATMAGGTRT
>NZ_CP023697.1|WP_167532515.1|742091_743036_-|transposase
MICVVGNRARAAIIRSQRITGLTPDVISELAAEIGPLWHERHQAVLTSRPRRRAVGAGAKHKLVFIDRLLATLVHLRHGATHDVLACWFGVDRSTITRAIGEVRPLLAERGCTVAPDVRLRTLAEVIDHLGASGQTGIIDGTEVRVRRPAAGRKDREKFISGKNKQNAVKSMVVTDAVGRLLFCSPAVPASCADITHARKLGLVGLLADGPAVEILADAGYQGLGAQTGGRVVTPPHRKFKKNPPEWYEEMYERQRKAHSSRRIRVEHGIGHLKNWRALARHHGCREHMSDIIQAVAGLLSHQQAATMAGGTRT
>NZ_CP023697.1|WP_055609827.1|740894_741764_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTNAHLDPTRKHDYVFLIDVKDGNPNGDPDAGGMPRTDPITGQGLITDVALKRKIRNTITLVHQGQPGFEMYVEQGVALNPQIQRAYIEGGAKEGETATAQEWMIRNFWDVRLFGAVMSVGDQKKHAGRARGPMQLTFSRSIDPVTPLEAGITRVAPNKPEDLAKGKVTEMGNKHYVPYGLYRGHGFYSGALGAKAKVTPEDLAAYWQALTMMFDHDRASSRGEMAIRGLYVFSHDDAYGRAPAHKLFDLIRIKPLGHSEARSWDDYADRITIDEDNVPTGVALTRLID
>NZ_CP023697.1|WP_055609826.1|739004_740837_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MLLQSLVQQADSRQGDTAEYYLARRVMWQIDLSSTGIGNAEPLVIDLRQEQRRITAPYTGRSGSKPAPILFADTAQFALAHPGLVKGPDGEKVLSTNSADVTKARTRHAAYRDLVTSWCNDHPHLPQAQAVAAWLNSHAPTAWPLEMDKDHLVAISLDGEWVHDLPEAKSWWAQKVKKAKSGKPGKANQGLCLVCGHVMPLLSTLPVPIKGIPNSGMNTQLVCLNQPAHFRAGTKQLGATPICVDCGTKSATALNTLLADPEHRAFADDSAIVWWTRDPDTDTAMWTLHDPQPEEVAQLIAGVRHPRRGRDALAVLDEDAFHALTLRVNTNRVIVADWITIPVPELKRRLGTWFADQQTWDGWNNTYTYWSVWRLALSCARWDKRKNKYVDTTVPKHLQADLTKAALHGAAPPAHLLPVLLQRIRADHHLDRPRLALLRLALIRTTTRHKELCVPQLNPQSTEPGYVCGRIMAMLEAIQRKAMPKVNTTITDKYLSTAVVSPRAVLTRLRIGARPHLRTIARTSGPAAKAMDGRLRDAFDLLDTIPAHLSTEQQALFILGYDHQRAHSARAAAEAIKAREAGKELAAGQQADALPEASTEDADSSDNTLW
>NZ_CP023697.1|WP_079061226.1|738292_739003_+|type-I-C-CRISPR-associated-protein-Cas5
MEAWGPLACFTRPELKVERVSYPTMTPSAARGLLEAIFWKPEMTYRVERIEQLKPVRWTRFRRNEVNNSIITKNAYESLRANNGYRYDVAEDRGQRVTVALSDVAYRIHATIHATDRCTAPLPKYRDQFDRRLVRGACYEQPHFGCREFAAFFGPRGSAEEAGVVTAADQAGIPPIDELGLMLHHIEYLPKDKERYHWFRASLEHGVLHVPDRPLAPAEVSGMPGAGGRASAEEVA
>NZ_CP023697.1|WP_079061224.1|735685_737974_-|CRISPR-associated-endonuclease-Cas3''
MPVPEGRLVAHSPGHQGTWHWYEDHARGTGELARRFAEPWRGGDLAYRLGRDHDTGKGACAWQEGLIEEATTGRKTRRPPHNDAGALLFARAAEPSPALLPCAGVIEGHHTGLSAWSEVRLRLKALMADSSEADEAIHRVTAVMPEILDDSCPAAPDWLDPRNKIAVEMLVRMTYSAVVDADRLDTAAHFRPGTHIRPHVGMPELWERYEARRQEALAERQRSKGASWLDKLRENVYQEALEAAVGKPGVYRLHLPTGAGKTFTGGGFALRHASLHGLRRVIVAVPFISITEQNAAEYRSLLDPEQGPLVVLEHHSAVNVEAPQSASPSTNVRHGQKGGQPNRWAKLATENWDAPFIVTTTVRLIETIFGNTPWATRRLHRLANSVIVLDEVQALPDRLLTPILSGLRELVEHYGVTLVLSSATQPELAALNPWRSGLPQRDVVADPAPLFKQLRRVRYEWRTGPEVTLASIAAEAAEHDQALVVVNGTKDASQVHRIWLSTNRDEDPGVLHLSTRMTGGHRRETIQATKQRLEECLDTLLVSTSLIEAGVNLDFSRGYRARSTPESEQQAAGRVNREGKRPAKDSVMTIFDPRDGLNPEVVYNTCAIAAASRRFGDGLADPDDLDVLRSYYQHRYRLQAGQHSEDPNGATGEVIEALRAKLHYPEVARRMRIVDNEHSVAVVVIRPRLAEETRRAAQKAVDQLRRGLPTPATYRTLQDHMASIPQRELETAINTGHAAEIAGDLYEWTGPYHPQRGIEPAP
>NZ_CP023697.1|WP_167532525.1|733811_734717_+|IS3-family-transposase
MRYAFIDAERATETNPGGHSVALLCRILGVSRSGYYAYLATREAARERARRQDELVTEIRRLHTTSSQAYGSPRITAALRRQGQRVNHKRVERLMREHGISGVTRRRRRGLTRADRTALASPDLVGRDFTAAEPGTKLVGDITYLPTLAGWWYLATVIDLATREVVGYAMADHHRAGLVVDALRMAAGRGGLKEGCITHSDRGAEYTSREYRALVKELGLRQSMGRTGSCYDNAAAESFFGLLKAEIGTTVWESHEQARADVFHFIEVEYNRTRLRKHPVYGYVTPLETRALTAQALAPAA
>NZ_CP023697.1|WP_150475066.1|733503_733809_+|transposase
MSKKSNTSKRYTAEFKRDAVALVHSSGKTVTEVARQIGVSPEGLRNWVNQDKADRGQGPAGTLTSDEKEELRRLRRENREQQQTIEVLKKAAAFFARESTK
>NZ_CP023697.1|WP_167532524.1|732180_732588_-|WhiB-family-transcriptional-regulator
MKDPDLFFPGTLADEQRLRLAKGICSSCAVREACLEAALEYGDAAGIRGGLTEEERRAIRHRFELRCDPVRVAAALAGRDVYLTQPERQELIRWAAESRTSIPQLARVLKVSEAHVKKLLRQERRANAHSRAASG
>NZ_CP023697.1|WP_141665722.1|746804_747023_+|hypothetical-protein
MIEQIFFDAEDDVLRHAVTVYYGGHPYVISHQPTPEEPARREQPAPCCFALPVAQSGSRGPLARFPPMPHHL
>NZ_CP023697.1|WP_079060773.1|747055_748234_+|three-Cys-motif-partner-protein-TcmP
MSSGTGGGYWADKALPSVFKHDLLKRYLPQFGGMTGTRSRDKRVVYLDGYAGEGRYENGDPASGEIALQVAKDLRTSAGLTLECFFCEPQAKSFDRLHEVVHQYLARGVRAHAHRGEVDGILDRVVERAVRESLFLFLDPTGLVLPQDRLVDVLAQKRPQKWPPTELLMNFSMMAVWRLGGHVRSPKGNEKSLQRFDDVCGGTWWREYFADAVASHDKDGAAEDAIEAVAAEYARRLERRTGMLVRSVPVSHSPRKRAVYRLVFATRSPYGLWVFGDTVARARATWWETLEEREEDDGLFSMASVTRPDPKEVEAKAVPEIAENLAKLLARTRRPVKLVDHTLEVFGAFYGQVTEPVVRQAVRLLHEQGGTPSNGVGVRTREITLYPGNLAA
>NZ_CP023697.1|WP_055605549.1|748278_749025_-|phage-Gp37/Gp68-family-protein
MSDRSAIEWTEATWNPTTGCDRVSPGCDNCYALTLAKRLKAMGAAKYQNDGDPRTSGPGFDVTLHPDALDVPYGWKSPRTVFVNSMSDLFHARVPLDFVRQVFQVMADTPQHTYQVLTKRARRLRQVAPKLDWPDNVWMGVSVETEKELARVDDLREVPAAVRFLSCEPLLGPLPGLHLDNIHWVIAGGESGPGHRPLDEAWATQIRDTCQDAGVAFFFKQWGGRTPKAGGRLLEGRTWDQMPLPVAA
>NZ_CP023697.1|WP_079060772.1|749902_750661_-|HAD-hydrolase-like-protein
MILVLWDIDRTLLYTGDTDRLVYRELFEEVVGRPAESLPARGTGVTMPLAVRELLRANAVEPERIEELAQRIVQRMPAQLERHRNDLSRTGQIMPGAPAVLAAVQQEPGLVPTVVTGNLRGSAEIKLKALGLDKYLDLIIGGYSSDDSHRPALVRVAQQRAGARHGYTFARDTTVIIGDSLEDVRTGREGGAHVIGVASGTTSVEKLAAAGACHVIPELTDTRCIIHLINQCVAPDVDQSCPDPSRGVGPEV
>NZ_CP023697.1|WP_055605556.1|750657_752154_-|helix-turn-helix-domain-containing-protein
MRPPSRVCERCATELSQYNPDALCALCAKAETAPGVPDRAWRDEAVHRALAAWDFGELLRLVRKRSGLSQMAVRELTALPQSFISGLERGQKQIGSPATLLDLLNGLGLPSDLQPLLLTPLRGAAPKPGHNLSAEAVLPWTADRMVTSLEVAIGGTTMKRRRVLTALSGAALTQYVLQSAIAPAEAVAASSGTTTVTDALIDSLQSTTDALRQMDATSGSGNLAHTAKTHLRMLLHLLKHGSYKEGYGRRLAAVTADTAAQTGWYTFDSGDHDAAQHLFLGALRAAHASGDSRLRAGALGFLAIHGYSAGDPRDAITAPRTARQAITDHDAPALNAMLLTRQARGHARLREERHALAALAEAEELCARGRGEDDPHWLYWISPGEILGQTGSCYLDLGQPARAAQSFATARDVLSRDETRTTAQFLSRAATAQMRAGDADAGCATAHDVLTLAEGIQSARLDDHLHTMLNEARSYGASSTALELLDRGESVMRQRAAA
>NZ_CP023697.1|WP_055605555.1|752594_752933_+|ATP-binding-protein
MRRLTRDHLIEEGLSCFADDVVLVVSELVTNAIQHSHGQKVTLTLSLCNGCLRINVHDGVRSHRPTPGKPCNEDEHGRGLLLVQAIAGARRGSWGVSDDGASTWCELALAMS
>NZ_CP023697.1|WP_055605548.1|752983_753472_-|SAM-dependent-methyltransferase
MVSTYEVRPIATVVGGHTRVLDDYQGGVRSIIRLHDEYPLETLQGIEEFSHLTVTWRFHLASPEEVQLHARSPRRNTRWPATGTFVHRNHRRPNQLAISYPRLLDVDGRDLLVTDLDAVDGTPVIDLAPYFEQMGPRGTVRQPAWPGEMLDPAYWRDATERP
>NZ_CP023697.1|WP_055605554.1|753547_754792_-|hypothetical-protein
MWVQGTQPSGQAPHILRETLSRRLGRHLTLADLGLEGEATGQTDSGSDWSVDPLTVLAELGSDDLDMHRRKLLATAAYSAAGLALPTASWWAAAPAAAAKRPAVSPRPATQADIDDVRDLTTFYSARDQQRGGAAGRSVLAGHLRDEAVPLLGSRFRTEQLRRDTYSAVAEMTYLAGWMAFDASEHRTAQRYLTLAACIAAEAGDGPLGGHILRALAHQAVDLGHPRRALALADASMSRDRYGQASPREKALLAIVHARALAADGDRPGTLAAISRAERDLARADNKEAPGRVGFFQEASLAHETACALRDLGRPLDAEIHFKRSVATRRRQQYARTHSVTLGYLDAVQVQQGRLDEACATWSKAFDAMTGVQSGRARDVIVRMQSDLSPVRHRGGRHVVELDRRAREMLRTIG
>NZ_CP023697.1|WP_055605553.1|755254_755605_+|hypothetical-protein
MLDEESPLPETAADVEDLARRLRGHIDQLGVMVPNEEPALRHAQQLGSAGVPDGYVPSRVYLVQLAKATRELAATVGTCGQQRGRCRWTPRINVLRGTVFALALACLVLAASVPRT
>NZ_CP023697.1|WP_167532502.1|755826_756000_+|hypothetical-protein
MKRLPRIEQYDPTIGRQLGDFPQAYSHIGGIGSALLLQQLDAGAPASLPDVLLVAGV

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Crispr_ID: NZ_CP023697_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023697_3

936859-936950

Orphan

Consensus_repeat	Method
GACGCTTCGCCGCCCGTCACTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023697_3

>merge|NZ_CP023697|3|936859-936950|CRISPRCasFinder
GACGCTTCGCCGCCCGTCACTCCCCCGGCGGTCCTTTCCGGACCTCGACCTCCTGCCCGTCGCCCCTCGTCGCTTCGCCGCCCGTCACTCCC

>NZ_CP023697|3|4|936859-936950|CRISPRCasFinder
GACGCTTCGCCGCCCGTCACTCCC	CCGGCGGTCCTTTCCGGACCTCGACCTCCTGCCCGTCGCCCCTC
GTCGCTTCGCCGCCCGTCACTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023697.1\|WP_150475079.1\|927094_928009_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP023697.1\|WP_055610078.1\|939296_939842_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055607704.1\|928092_929241_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP023697.1\|WP_079060998.1\|929846_930356_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_079060999.1\|929173_929524_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP023697.1\|WP_055608847.1\|925518_927186_+\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NZ_CP023697.1\|WP_079061249.1\|939893_940661_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378427
NZ_CP023697.1\|WP_079061232.1\|937042_937798_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369321
NZ_CP023697.1\|WP_150475081.1\|945721_946576_-\|putative-protein-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|274733
NZ_CP023697.1\|WP_055608923.1\|942871_943252_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055610077.1\|940693_942709_-\|NADPH-dependent-2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
NZ_CP023697.1\|WP_055607699.1\|935792_936419_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NZ_CP023697.1\|WP_055607700.1\|934751_935744_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NZ_CP023697.1\|WP_055607701.1\|933845_934184_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055607698.1\|936411_936825_+\|PTS-fructose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|184702
NZ_CP023697.1\|WP_150475082.1\|946922_947546_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239027
NZ_CP023697.1\|WP_055608924.1\|943571_945707_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP023697.1\|WP_150475080.1\|938001_939078_+\|fibronectin-type-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|238020
NZ_CP023697.1\|WP_167532530.1\|930519_930657_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_079060869.1\|947538_948357_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|99813

Protein	Function_ID	Function_description	E-value
NZ_CP023697.1\|WP_150475079.1\|927094_928009_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.31447e-61
NZ_CP023697.1\|WP_055607704.1\|928092_929241_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	7.8718e-95
NZ_CP023697.1\|WP_079060999.1\|929173_929524_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	1.49348e-13
NZ_CP023697.1\|WP_055608847.1\|925518_927186_+\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.81456e-29
NZ_CP023697.1\|WP_079061232.1\|937042_937798_-\|hypothetical-protein	gnl\|CDD\|369321	pfam07335, Glyco_hydro_75, Fungal chitosanase of glycosyl hydrolase group 75. This family consists of several fungal chitosanase proteins. Chitin, xylan, 6-O-sulphated chitosan and O-carboxymethyl chitin are indigestible by chitosanase. EC:3.2.1.132. The mechanism is likely to be inverting, and the probable catalytic neutrophile base is Asp, with the probable catalytic proton donor being Glu. (see the Chitosanase web-page from CAZY).	1.20428e-25
NZ_CP023697.1\|WP_079061249.1\|939893_940661_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|378427	pfam10400, Vir_act_alpha_C, Virulence activator alpha C-term. This structure is homo-dimeric, and the domain here is the C-terminal half of the structure, often associated with PadR upstream, (pfam03551), which is a transcriptional regulator.	6.36026e-20
NZ_CP023697.1\|WP_150475080.1\|938001_939078_+\|fibronectin-type-III-domain-containing-protein	gnl\|CDD\|238020	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.	3.63735e-13
NZ_CP023697.1\|WP_150475081.1\|945721_946576_-\|putative-protein-N(5)-glutamine-methyltransferase	gnl\|CDD\|274733	TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.78641e-118
NZ_CP023697.1\|WP_055610077.1\|940693_942709_-\|NADPH-dependent-2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
NZ_CP023697.1\|WP_055607699.1\|935792_936419_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	4.83394e-80
NZ_CP023697.1\|WP_055607700.1\|934751_935744_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP023697.1\|WP_055607698.1\|936411_936825_+\|PTS-fructose-transporter-subunit-IIA	gnl\|CDD\|184702	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional.	1.24985e-26
NZ_CP023697.1\|WP_150475082.1\|946922_947546_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239027	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	1.17779e-90
NZ_CP023697.1\|WP_055608924.1\|943571_945707_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	2.32957e-51
NZ_CP023697.1\|WP_079060869.1\|947538_948357_+\|oxidoreductase	gnl\|CDD\|99813	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	3.7034e-85

>NZ_CP023697.1|WP_055607698.1|936411_936825_+|PTS-fructose-transporter-subunit-IIA
MSDDGRLVGIVLVSHSAQVAASVAELAKGLAGAGDTVAVAPAGGTEDGGLGTSAGLVAAAAASVDRGAGVAVLTDLGSAVLTVKALLAEGDELPEHTRLVDAPFVEGAVAAVVTASTGADLAAVEAAAAEAYTYRKV
>NZ_CP023697.1|WP_055607699.1|935792_936419_+|dihydroxyacetone-kinase-subunit-L
MLDADFFRRWMAVTSAAVDREAEWLTALDSPIGDADHGSNLQRGFGAVRAALDEEPPVTPGAVLTRSGRLLISTVGGASGPLYGTLLRRTGKALGDAPEVSREQLAEALRTGVDAVRQLGGAAPGDKTMIDALVPAVDALGDSFAAARAAAEEGAVATTPLLARKGRASYLGERSIGHQDPGATSAALLIAGLAEASGTSEAGEASGE
>NZ_CP023697.1|WP_055607700.1|934751_935744_+|dihydroxyacetone-kinase-subunit-DhaK
MKMLINVPETVVADALRGMAAAHPELAVDVENRVIVRRDAPLVGKVGLVSGGGSGHEPLHGGFVGPGMLSAACPGEVFTSPVPDQMVRAAAAVDSGAGVLFVVKNYTGDVLNFDMAAELAEDEGIQVAKVLVDDDVAVTDSLYTAGRRGTGATLFVEKIAGAAAEEGQPLERVEALARQVNENSRSFGVALTAVTTPAKGSPTFDLPAGELELGIGIHGEPGRERRPMMTSGEIAEAAVDAILADITPRNPVLVLVNGMGATPLLELYGFNAEVQRVLGERGVPVARVLVGNYVTSLDMAGASVTLCQVDEETLRLWDAPVRTPGLRWGM
>NZ_CP023697.1|WP_055607701.1|933845_934184_+|hypothetical-protein
MPKKTQPRRQWKQRFLDELVLTAPVEVRGKVGTAMHLCGSDGAVRLCRQGRDGLRPEAAETAVAIGSVERFEAFPDECLIEPAQRGRPVRPRGEGVGRAHLVVDEPAEEFRG
>NZ_CP023697.1|WP_167532530.1|930519_930657_+|hypothetical-protein
MGEGLFELAVDAEPFEGGGEVAGGPGGPELAGRAEFDGGLLVISR
>NZ_CP023697.1|WP_079060998.1|929846_930356_-|hypothetical-protein
MPSTESAARALQDHAVLWSIGESRAIDVVNAACDALVVGLDGPALRILAACTRAEADYDVPELLPPALDELGLTFYPSGSVGSQEAAARALAARMLAGELTPRELAFRIHQRFGHELPLAERLAELDDESDTLEYSDRTPAQVDADVTAEALRLAQHPRVPTEPTDAQT
>NZ_CP023697.1|WP_079060999.1|929173_929524_-|transposase
MSKKSNTSKRYTADFKRDAVALVHSSGKTVTEVARQIGVSPEGLRNWVNQDKADRGQGPAGTLTSDEKEELRRLRRKNREQQQTIEVLKKSRLRFNRSRQHSRLVFGIPGTCADGC
>NZ_CP023697.1|WP_055607704.1|928092_929241_+|IS30-family-transposase
MARLGRPGMSDEMKADLWRRWRFGESISVISRQIGKPPGWVFTVLKHHGGIAPVPRKACAGSLTMGEREEISRGLCAGDSYRAIAGLLGRAVSTVSREVNNNGGRDVYRAIAVQERALDRARRPKQCLLARRPALRQTVLTLLREEWSPEQIVGHLRLHHSDDPGMRISHETIYRSVYTTRWKMVPRELCKRLRTGRPIRKNKRHTVKGQWRSQISDARPIEERPRATEDRSESGHLEGDLVIGSNNSQVATLVDRKTRFLKVVKLASRHTSVVVPALAETYARMDPRLRGTLTWDRGMELAAHKRLSADTGVDVFFAAPRSPWQRGTNENTNKLLRQYLPKGTNLSTFSQDDLDAIATKLNNRPRKCLGFRTPAESVALTG
>NZ_CP023697.1|WP_150475079.1|927094_928009_-|IS3-family-transposase
MRYAFIDAERATETNPGGHSVALLCRILGVSRSGYYAYLATREAARERARRQDELVTEIRRLHTTSSQAYGSPRITAALRRQGQRVNHKRVERLMREHGISGVTRRRRRGLTRADRTALASPDLVGRDFTAAEPGTKLVGDITYLPTLAGWWYLATVIDLATREVVGYAMADHHRAGLVVDALRMAAGRGGLKEGCITHSDRGAEYTSREYRALVKELGLRQSMGRTGSCYDNAAAESFFGLLKAEIGTTVWESHEQARADVFHFIEGPCCPIDLTRRGQGLRGGKCASVRVQFRSTKRRVGSG
>NZ_CP023697.1|WP_055608847.1|925518_927186_+|IS1182-family-transposase
MGRGSGAEVPQVTRQVALAAFPKGCLAMRVRDELGPLFDDEVFRSAFGVRGRPGVSPGQLALVCVLQFAENLTDRQAAHAARARIDWKYLLGVELSDPGFDFTVLTGFRDRLLAHGMEETVLDLLLRRLVELVLVAPGGRQRTDSTHVLSAVRDLNRLEFVGETLRAILEAIAVAAPAWLRTWMDPSWQQRYRARVDAYRLPGAQDERDELARQIATDGYRLLETVFTPAAPGWLREVPAVVVLRTVWLQQFGRTVTDGIEEVAWRDKEDCPPSRARVTSPYDVDSRYAVKRGSGWNGYKVHLSETCDDPAEVGRPHVITHVITTDATVHDAAVVEQIHDRLDDRGLLPSEHLLDSGYVSAELLLTSPVERGVEVVGPVRPNSTRQAVQAARYGKTSFSVDWDARQATCPNGANSRYWTEGYDHSGRLAVRIRFATQTCAPCPARDQCTRSTRYGRQLTVRPQDQDILLERVRAEQNTEEWRARYAARAGVEGTIHQAVATTGARRTRYTSLAKTRLAHIFMATAINLIRLDAWWNGTALAPTRTSHLAALDLAA
>NZ_CP023697.1|WP_079061232.1|937042_937798_-|hypothetical-protein
MRWDRVSVGVPHERPHIVIPVQSLALTVAGVAALTPTVLHGAASPQARTEPPAVRQSGSVGAADLLAEVGDCTPVSQGRYRSDQGAAATIPVCGTDEVVFWKADMDIDCDGQPGIRCNTAADPYFSASTAFAQSDGRPLNSETLPYVVVPAPSALWDYRAHGVRGGSVVAVVYGDRVRYAVVGDTGPVGVIGEASYAAAEELGIDPDPRSGGAPSGVTYIVFKNSRVIPLEDREAAVVAGEALARQFVNGG
>NZ_CP023697.1|WP_150475080.1|938001_939078_+|fibronectin-type-III-domain-containing-protein
MSGDRVVRSAPFTAAVPSRRPPAPRDGALRPPLPLRGVLVLVLLLVVSCGAGGGDGGSGDGGGQPPGAPAGVTAEAGSATSVHVMWNTVPAASARVSRYEVYRGTTKVEEVPGSEHMVDVTRLRPSTTYAFTVRARDAEGRLGPRSREVRATTPAATVSDRSAPGRPSGLRGKAVGGRAVQLSWSASTDDRGVLSYDIHQGGTKVHSVGGGQTATVVTGLRPGTRYSFTVRARDAADNVSPPGAPLRLTTPGRDTAPAAAPTGFRASSHRSEGAYHIDLSWVPPRVDGVITEYQVHLDGRPATSVVYGGEAPRDRATYSFYAGREAGVDHRVRIRARLPDGTWGGFSTERTVTTGPGH
>NZ_CP023697.1|WP_055610078.1|939296_939842_+|hypothetical-protein
MRYSKSLARSGLTVAAAAALPLALAGPAAPGPGVSVSTTGSTVSVTTTACAQLNGSWGTASLLAAGQSNFSQGRQVALAGTASGQSAAWSDVGSGTHTVIVMCSNGTTAGTQSVIVSPSDPPAAPPAVTASPSPSLGVMGGIGGSSTDYGTVTLVAGGALVGTGLVATAWYLRRRNRPNRL
>NZ_CP023697.1|WP_079061249.1|939893_940661_-|PadR-family-transcriptional-regulator
MSLPHAILTALLEKPSSGLELTRRFDKSIGYFWSATHQQIYRELGKLEAEGLIRALTAEQPARGQKKAYEVLPAGRAELVRWTSTAQDPKPMRDALLLRLRAAAVVGAGGLEVDLRRHLELHERQLAEYREIERRDFPPGRDAPDDRLRHLVLRAGIDLETFWTGWLGHALAEFTQIAESAQDTEGAQGTKGAQGMKGADDARIAESTESAENAVRGEVAGPPDGERAGPPEGAAPTEPPGPGGAEPDGPGSEGA
>NZ_CP023697.1|WP_055610077.1|940693_942709_-|NADPH-dependent-2,4-dienoyl-CoA-reductase
MSRYPHLLTPLDLGFTTLPNRVLMGSMHVGLEEAENGFERLAEFYAARARGGVGLIVTGGIAPNDEGRTFEGGAKLTTDEEAERHRVVTEAVHREGGRIALQILHVGRYAYHQDLVAPSPLKAPISPFTPRELTDADIERTIDDYVRTALLARQAGYDGVEIMGSEGYLINEFIVAQTNRRTDRWGGSYENRTRFPLEIVRRVREAVGEDFILVYRLSMLDLVPGGSTLDEVITLARGVEEAGATIINTGIGWHEARIPTIATSVPRGAYTWVTKRLMGEVSVPLVTTNRINTPELAEQLLAEGHADMVSMARPMLADPDFVAKAADGRPEAINTCIGCNQACLDHTFNLQITSCLVNPRACHETELVLSPTRRRKRVAVVGAGPAGLACAVGAAERGHDVTLFDAASEIGGQLNVARKVPGKQEFDETLRYFRTRLAELAVDVRLDTRVTADDVADHDEVVVATGVTPRVPDLPGVDHPSVLGYLDVLRDGAPVGDRVAVLGAGGIGFDVAEFLTDGGDKAHEDPETYFRQWGVDMDHRTPGGLTAPERPAPPRTVHLLQRKTTKVGAGLGKTTGWIHRTELKHRGVTMVPGVRYDRIDDAGLHLTVDGESTVLEVDTIVLCTGQEPRRDLYEELVAAGRSVHLIGGADVAAELDAKRAVKQGTEVAAAL
>NZ_CP023697.1|WP_055608923.1|942871_943252_-|hypothetical-protein
MGSERPHPESVSVELSGCDRHDAQIVFDTLGAYFTSDRSSGDVPEASSGARPTVWLGTFDVADPHEGGARPDAPARLGSSVEVDLQGGYWAIDRVRTTLESLFTVHDLSTVSGDQEKELHVRLESR
>NZ_CP023697.1|WP_055608924.1|943571_945707_+|SpoIIE-family-protein-phosphatase
MSSAGSPLGDGDGAVLGPIRPSGLLDVLRVASVVLDSQGRIVLWSPQAEELFGYGAEEALGQYAARIMVHEKHLDLVITLFSEVMRTGQSWAGVFPIRRKDGGTRLVEFRNMRLTDDQGGVYALGLAVDQSTVRRVEQDVALSTRIVAQSPIGLAVLDTALRYVSVNPALERINGVPVEEHLGHTIPEVLPQLDVAAVEAAARQVLDTGKPVVDQYMIGRTPADPDGDHAWTTSLFRLENALGSVLGVALSVVDVTEQYRAGIEAERARRRLALVADASARIGTTLDLERTARELADVAVPELADVAAVDLLDTVVLGRRSTLGPTESAVIRALAVQSTGTGSKDALLAADPPGRVARYGPDRFVTECVRTGLPVVLPQVKDEDLPRIARSAEAAELLGRAGVHSYLAVPLIAHGEVLGALDLKRTGNPLPFDEDDLLLARELAARAAIQIDNARWYQSARDAALTLQRSLLPSHPPVTGGLEVASRYQPAGATNEVGGDWFDVIPLDGGRTALVVGDVMGNGIPAAATMGRLRTATNTLASLGLDPAVLLEHLDRIVGELEDAIATCVYVVHDPRERQCLIANAGHLPPVRVRADGTPELLGLPTGVPLGVGGVGFSTTVVGLEPGDLLVLYTDGLVETRHHSLDERLDRLLTLLRGRPDRSLEETCDLLLRTLHEPDDFDDVALLIARATPPGGAVSPGRPAASDGASA
>NZ_CP023697.1|WP_150475081.1|945721_946576_-|putative-protein-N(5)-glutamine-methyltransferase
MPSRSPRAALSASSSPPVVPSEPLAPAAPVAPDSVVAALRAAGCVFAEAEAELILAAAPTPDHVTGMVERRVRGLPLELIVGWAEFSGRRIAVAPGVFVPRRRTEFLVAQALAQAPHAAVVVDLCCGSGAVGVALAAGLGTVELHAADIDPAAVCCARRNVADVGGLVHTGDLFEALPGTVRGRVDILAANVPYVPSDEIGLLPAEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGCLLVETTRRQAPAAAAAFTGAGLRTRLAVPEEEYVHVVIGVRP
>NZ_CP023697.1|WP_150475082.1|946922_947546_+|molybdopterin-dependent-oxidoreductase
MNITRGFTGRPRVHNPGLPPGQYDAGDEWPVLSAEVTPDLAPADWALRIDGLVAEPRAWTWEQARALPASAYEGAIHCVTGWSKFGVRFGGVSLDTFWDAVRPQGSATHVVAYSHTGYTANLPLADLTGGRAWLAWEYDGRPLTPEHGGPARLVVPHLYFWKSVKWIAGLRLLDHDEPGFWEGNGYHARGNPWEEQRYTGDGDDGHG
>NZ_CP023697.1|WP_079060869.1|947538_948357_+|oxidoreductase
MAEVTERAARPRRDGGPEAEAAPAPFAPPTRFAVPGRIGVSEQTASVWRTATLTGIRRETPRAATFRFAVPGWPGHVPGQHLLLRLTAEDGYAAQRHYSIASAPDDSGHIELTLDHVAGGEVSGWFHSVARPGDRVEVRGPLSGFFAWPGDRPALLVGAGSGVVPLMSMVRHHRARGLSLPLRLLVSARSPEELIYGDELGTETLRVFTRSAPEGTAIGRMTAEHVAPLLAEAPPSGWEAYVCGSNSFAEHASRLLVAAGQPVDRIRIERFG

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Crispr_ID: NZ_CP023697_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023697_4

2698185-2698301

Orphan

Consensus_repeat	Method
CCGTGTGTACGGGTGCCGTGCGTACGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP023697_4

>merge|NZ_CP023697|4|2698185-2698301|CRISPRCasFinder
CCGCGTGCACGGGTGCCGTGCGTGCGACCGCCGCGTGTGCGGTCACCGTGTGTACGGGTGCCGTGCGTACGGGTGCCGTGCGTACGGGTGCCGTGCGTACGGGTGCCGTGCGTACGG

>NZ_CP023697|4|5|2698185-2698301|CRISPRCasFinder
CCGCGTGCACGGGTGCCGTGCGTGCGA	CCGCCGCGTGTGCGGTCA
CCGTGTGTACGGGTGCCGTGCGTACGG	GTGCCGTGCGTACGGGTG
CCGTGCGTACGGGTGCCGTGCGTACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023697.1\|WP_055609063.1\|2703822_2706444_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP023697.1\|WP_055605575.1\|2682974_2687192_-\|ribonuclease-E/G	unknown	unknown	gnl\|CDD\|273254
NZ_CP023697.1\|WP_150475226.1\|2702162_2703722_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP023697.1\|WP_055608411.1\|2695681_2698120_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP023697.1\|WP_055609067.1\|2711016_2712438_-\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP023697.1\|WP_079060776.1\|2689580_2690582_+\|ion-transporter	unknown	unknown	gnl\|CDD\|366146
NZ_CP023697.1\|WP_055605573.1\|2680783_2682247_-\|catalase	unknown	unknown	gnl\|CDD\|163712
NZ_CP023697.1\|WP_055608413.1\|2692766_2694320_-\|CYTH-and-CHAD-domain-containing-protein	unknown	unknown	gnl\|CDD\|214880
NZ_CP023697.1\|WP_055570721.1\|2700242_2701262_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP023697.1\|WP_055605576.1\|2687453_2688230_-\|DUF2344-domain-containing-protein	unknown	unknown	gnl\|CDD\|378393
NZ_CP023697.1\|WP_055609065.1\|2707640_2708927_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP023697.1\|WP_055608412.1\|2694434_2695685_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP023697.1\|WP_055605579.1\|2688278_2689310_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055605577.1\|2690670_2692644_-\|TIGR03960-family-B12-binding-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188475
NZ_CP023697.1\|WP_055609074.1\|2709912_2710521_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
NZ_CP023697.1\|WP_055608409.1\|2699079_2700021_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP023697.1\|WP_055608410.1\|2698400_2699066_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|274574
NZ_CP023697.1\|WP_055609066.1\|2709116_2709797_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|237133
NZ_CP023697.1\|WP_055605574.1\|2682435_2682849_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|133478
NZ_CP023697.1\|WP_055609064.1\|2706582_2707518_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236669

Protein	Function_ID	Function_description	E-value
NZ_CP023697.1\|WP_055609063.1\|2703822_2706444_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP023697.1\|WP_055609066.1\|2709116_2709797_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|237133	PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.83945e-124
NZ_CP023697.1\|WP_150475226.1\|2702162_2703722_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	2.06254e-134
NZ_CP023697.1\|WP_055608411.1\|2695681_2698120_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP023697.1\|WP_079060776.1\|2689580_2690582_+\|ion-transporter	gnl\|CDD\|366146	pfam00520, Ion_trans, Ion transport protein. This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.	1.38348e-40
NZ_CP023697.1\|WP_055605573.1\|2680783_2682247_-\|catalase	gnl\|CDD\|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
NZ_CP023697.1\|WP_055608413.1\|2692766_2694320_-\|CYTH-and-CHAD-domain-containing-protein	gnl\|CDD\|214880	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family. It has conserved histidines that may chelate metals.	2.47375e-45
NZ_CP023697.1\|WP_055570721.1\|2700242_2701262_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP023697.1\|WP_055605576.1\|2687453_2688230_-\|DUF2344-domain-containing-protein	gnl\|CDD\|378393	pfam10105, DUF2344, Uncharacterized protein conserved in bacteria (DUF2344). This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function. This domain is distantly related to tRNA pseudouridine synthases, suggesting this family may carry out a function related to RNA modification. But this family appears to lack the catalytic aspartate found in pseudouridine synthases.	1.18307e-67
NZ_CP023697.1\|WP_055609065.1\|2707640_2708927_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP023697.1\|WP_055608412.1\|2694434_2695685_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	2.82442e-129
NZ_CP023697.1\|WP_055605575.1\|2682974_2687192_-\|ribonuclease-E/G	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	1.8365e-168
NZ_CP023697.1\|WP_055605577.1\|2690670_2692644_-\|TIGR03960-family-B12-binding-radical-SAM-protein	gnl\|CDD\|188475	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein. This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP023697.1\|WP_055609074.1\|2709912_2710521_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.89379e-119
NZ_CP023697.1\|WP_055608409.1\|2699079_2700021_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	5.10058e-66
NZ_CP023697.1\|WP_055608410.1\|2698400_2699066_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.71147e-13
NZ_CP023697.1\|WP_055609067.1\|2711016_2712438_-\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	1.10043e-150
NZ_CP023697.1\|WP_055605574.1\|2682435_2682849_+\|transcriptional-repressor	gnl\|CDD\|133478	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.	6.90897e-37
NZ_CP023697.1\|WP_055609064.1\|2706582_2707518_+\|hypothetical-protein	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	4.67494e-09

>NZ_CP023697.1|WP_055608411.1|2695681_2698120_-|penicillin-binding-protein-2
MTNIPETGRSTRVQIRLVVIQVLVLSLLGTLGGRLWYLQIREGAEYAKKASGNHVQQVVQPAVRGSILDARGVALADNETRLVVSASRTDLMKMRDDGEAVLTKLAGVLGMPAKDVLEKVRLCDAETPQPCWNGSPYQPIPITDEATAKQALQIRERAEDFPGITAEPQAVRRYAAPGQANTAQVLGYLSPVTDEELQKAQDTASPYLRSDQVGRSGLEREYDKELRGKAGVTRYEVDNLGRVIGEAEADPAEPGANLVTSIDARVQRVAEYELNEAMKAARKEMDRNTNRLYEADSGAVVVMEAKTGRVVAMASNPSYDPNAWVGGISGKDYASLTGKDSNYPLLNRAIQGLSAPGSIFKVIPTAAAINAGYSFDGPYECSSSYSIGGQVFKNFESQNHGAISLGRALEVSCDTVFYRLSHEEWKRDGGNKPKKNAKDWFYKTSHQFGLGELTGIDLPNEVTGRVPDRQWKRDYWEANKDAWCKSGKKGGSYVEQIAYENCLEGNRLRAGDSVNYSIGQGDTLVTPIQMASVYAALANGGTLYRPTVGKAVISPDGKQVTKIEPEAQSRLPVTKKTLAEIDGALEGVATRGTAAWRFGGWPQDEIPMHAKTGTAEVYGKQTTSWFATYTKDYSVVMTIAQGGTGSGASGPAVRNIYNALYGVSPEGVIDGKKALLPTPQKTLPKVRTDGTIVSPKISKDPAKERRAAEESEQTPDGDGQDQTQNQDQDQGATTTTPPPANRDTRRREARRGGPRRGGGGRGDRPSGDGPPGDGRTRGERTGDGGQDDGRPSGGRLRGALRARRAAGRRAAA
>NZ_CP023697.1|WP_055608412.1|2694434_2695685_-|rod-shape-determining-protein-RodA
MSGGVNSFHVSGYGPERAGWTRLFARDSPARRLDWPILLAATALSLLGSLLVFSATRNRTDINQGDPYYFLVRHWLNTGIGLALMIAVLWLGHRALRTAVPVLYGLSVLLILLVLTPLGSTINGAHSWIKLGGGFSIQPSEFVKLTIILGMAMLLAARVDAGDKPHPGHRTVLQALGLAAVPMLIVMLMPDLGSVMVMVVIVLGVLLASGASNRWIFGLIGTGAIGAITVWQLGVLDEYQINRFAAFANPELDPAGVGYNTNQARIAIGSGGLTGSGLFEGSQTTGQFVPEQQTDFVFTVAGEELGFVGGGLIIVLLGVILWRACRIARDTTDLYGTIVAAGVVAWFAFQSFENIGMTLGIMPVTGLPLPFVSYGGSSMFAVWLAVGLLQSIRLQRPLSAMNPPGRPPARPAGLLV
>NZ_CP023697.1|WP_055608413.1|2692766_2694320_-|CYTH-and-CHAD-domain-containing-protein
MADIKREVERKYESGDKGLPDLTGVPGVESVVDRGVAHLDALYYDTADERLAAASLTLRRRTGGSDAGWHLKFPVAPGVRDEIHAPLSDTVPEHLARLVRSRVRDAELSPVVRLRSDRDVRHLLDGTGRLLAEVSVDAVRAERLTGGTARWTEIEVELADGTDPAFLDKVDKKLRKAGLRPSDSPSKLARALAETESAATTPRSAPAPAVAPAAAPKQKHRSRPVGKPVTAGDHVLAYVRAQRDALVELDPAVRQGVPDSVHRMRVATRRLRSTFRSFGPVLDREATDPVAVDLKWLAAELGLERDQEVLAERLRSDLDELPDALVHGPVHERLTAWAEAGHSGAHSEVTAILDSRRYLTLLDTLDALLADPPLRKKAAAKPAKPLTKALRKDFGKVSGLVARALDLPPGHERDVTLHEARKKTKRARYAAEAAGPALGAPAEDLVKSMKKLQSLLGDHQDSVMARRTLRELSAVAHAAGESAFTYGLLHGHEERRAEIVEADLPETWKSVRKGTAL
>NZ_CP023697.1|WP_055605577.1|2690670_2692644_-|TIGR03960-family-B12-binding-radical-SAM-protein
MPAEAAEAAESVFPQLEALLPHVQKPIQYVGGELNSTVKPWDSCDVRWALMYPDAYEVGLPNQGVMILYEVLNEQEGVLAERTYSVWPDLEELMREHRVPQFTVDGHRPVKAFDVFGLSFSTELGYTNMLTALDLAGIPLEAKDRGLDDPIVMAGGHAAFNPEPIADFIDCAVIGDGEQAVLEVTRIVRAWKQEGRPGGREELLFRLAKTGGVYVPGFYDVEYLPDGRIARVVPNRSGVPWRVAKHTVMDLDEWPYPKQPLVPLAETVHERMSVEIFRGCTRGCRFCQAGMITRPVRERSITGIGDMVEKGLKATGFEEVGLLSLSSADHSEIGDIAKGLADRYEEDKIGLSLPSTRVDAFNVDLANELTRNGRRSGLTFAPEGGSERMRKVINKMVSEDDLIRTVATAYGNGWRQVKLYFMCGLPTETDDDVLQIADMAMNVIQKGREVSGSGDIRCTVSIGGFVPKPHTPFQWAPQLSAEETDARLTKLRDKIRGDKKYGRSIGFRYHDGKPGIIEGLLSRGDRRVGAAIRAVYEDGGRFDGWREHFSYDRWMRCADKSLAQFGVDVDWYTTRERAYEEVLPWDHLDSGLDKDWLWEDWQDALDETEVEDCRWTPCFDCGVCPQMDTSIQIGPTGKKLLPLTVKNAAPAPSGATS
>NZ_CP023697.1|WP_079060776.1|2689580_2690582_+|ion-transporter
MNDHPAPTGAAPRRRPLRHVLARRARALTEARWFALSVFVLIIVNAALLGAETYSGLARDWRHWLHLAEHLCLAAFTVEIAVRACAHADRPRDFFRDPWNLFDLAVVACAFLPLVRENTTVLRLLRLARVLRTARFLPQLRIVIVAVARSLPGTVSFLLVGTLLLYVYAMAGWVFFGEANPGQYGSLGRAALTLFLLMTLDGLGDAVHAGLEVSRWSILYYASYVLIASFVLVNVLIGVVISSLEEARELEREHSPAPDTPSVPVPMPMPVPAQAQAPVPVPVPEVDLRTRIAAARRALDDLEAVLPPLLVTHPPEPPVLTPAPASAPDTAHP
>NZ_CP023697.1|WP_055605579.1|2688278_2689310_-|hypothetical-protein
MVAAIRLPVRVVVFLVVLPARLVWDACATAGRWLGRTVFRPLGRALLWAGRAVFVWPLVGLWRYVLVPLGRALAWLGNLVVVVPAGWLYRYVLVPLGHALGWVYARVLTPFGHGLTWVLHGIAAVCGAIGLGVSAALSRLARYLVVVPCAWVYRWVLTPLGHAVARCAGALAWLVGAAVTGIGTGLYWITRILFVLPLLAVWRRVLVPAGRVLAVVAREILDALGHAWRVAGYVSLAVGRFLSALFRWAVVEPVRLLYTHVLTPVGHTVRDAVLRPAAAAARAAGHAVRQSLASARLTLRQARADLRRMLVGERRPAREENLREPIGGDTRTLGSSTTALTKD
>NZ_CP023697.1|WP_055605576.1|2687453_2688230_-|DUF2344-domain-containing-protein
MQRIRLRYTKRGRLRFTSHRDFQRAFERALRRAEVPMAYSAGFTPHPKVSYANAAPTGTGSEAEYLEIALTRERDPELLRTLLDESLPTGLDIVEAAEARTSGLADRLTASVWELRLDGVDAEEARRAVDAFNAAETVEVQRRTKNGVRTFDARSAVVELKSVETPSSPADGPTGRPCAILRLVVRHVTPAVRPDDVLSGLRAVADLAPPVPAAVTRLAQGLLDEETGTVTDPLAPDREAAATEPQPAGPTATATVPA
>NZ_CP023697.1|WP_055605575.1|2682974_2687192_-|ribonuclease-E/G
MLEPTEPTEGSEPNSPSDTLPPRRRRRAASRPAGPPAAASGTAEETTAPAIPAAGPAELLDGNDELTAAEDTAAETAAAPEPAAADDAGPRRRRRVVRRPASSAGEPEAASAAETVVPATEAPAAPAAEPAESVADAAPAEEAAPPRTRRRATRRVTSPTTTVSEATGPDRSAASAESTVTPDSPRATATASDTAAPASVEAAPADTADTAVDDDAAPRRTRRRASRRASAPATTETVQAAPSAEAAASPAEEAKAPVSETTGETPKAPAVSEAPEAPEAPAAEDAAPRRRRRAVRKAAAGFAEPARPAAGSAGAAGTAKRPARPAVAVFQAPVFTEPQFQTPERAAAEAAAEAAGAVEPEEPEETEELPEEQPVASRRRRRRRGAAEETEAAPAARTASGGSTLTEPASDARAEDGTDADADADEQAEDHADDDQDENEGPGSRRRRRRGGRRRRRGESAEADAEGGESEDDADDETEDTEDGSADDAEDTDESAEDGDDTGTAGGSSSSRRRRRRRRRAGDGGGEADASGDDPERTVVKVREPRKAAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQYGDRTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIEAALKSGQPVLTQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKSILKRVVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIKKKSRNGGGSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVAHVAPDLAGRLQRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMIVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQPTSTGGGGKRRKRARAGGEHVHEHEADVVTTAEQEAEAESEPETVAEVAAETAEPIALPAPEYTPDEELYSSAAEAEAAASRGRGRRRTSRRASAPAGTPRREERRREPAVAASTDAPAAEEPQAQVPTAQDTTAAQEAARPVQPEPAAEAHAVPAAAEDPVVEAPAAAEAAPAVRTRRRATRKASAPAGSPAGAEATVVTVAETVPATAPSEPGQASEPVAEQPPAEAPESAAETAAPPRPRRRAVRKPTVSTASEEAAVVVVPSATAEREAPVDETAAVDGTVTAAEAEAVEAAVEETAPVKKAARATAKKTTAKKAATKKTTAAKTTPAKKTAAKTTAAKKTAAKKATVKKAAAKTTTAKKTVAKKTTAKKTAAAAAQQPTPSVTVSTED
>NZ_CP023697.1|WP_055605574.1|2682435_2682849_+|transcriptional-repressor
MSDLLQRLRERGWRLTAQRRVVAEVLAGDHIHLTADEVHARATERLPEISRATVYNTLGELVALGELLEVSTDHRATRYDPNARRPHHHLLCDRCGTIRDVHPTGDALSALPESERFGYTVSGVELTYRGICPNCAA
>NZ_CP023697.1|WP_055605573.1|2680783_2682247_-|catalase
MTENNQKPLTTAAGAPVADNQNALTAGPRGPMLLQDVWFLEKLAHFDREVIPERRMHAKGSGAFGTFTVTNDITRYTSANIFSEVGKKTDLFVRFSTVAGERGAADAERDIRGFALKFYTDEGNWDLVGNNTPVFFFRDPLRFPDLNRAVKRDPRTNLRDAENNWDFWTNLPEALHQITIVMSDRGIPASYRHMHGFGSHTYSLINAEGERFWVKFHHRTQQGIKNLTDAEAEALVGKDRESHQRDLYEAIENGDFPKWKMFVQVMPEADAENYRFHPFDLTKVWSKKDYPLIEVGEWELNRNPANYFADVEQAAFTPANVVPGISYSPDKMLQGRLFSYGDAQRYRLGVNHHQIPVNAAKNPVNTYHRDGAMRIDGNQGSTPGIEPNSYGRWPDQPAYREPSQAVGAVADRFNFREDDDNYFEQPGNLFRLMTAEQQQVLFENTARAINGASEQTVARHIANCTKADPAYGEGVRKAIEALAAGSL
>NZ_CP023697.1|WP_055608410.1|2698400_2699066_-|rod-shape-determining-protein-MreD
MRVNRILLSSSLIVVALMIQVSVLARLHLPGAVPDLLLLTVLGLALVYGHVGGALIGFGAGLLADLAPPADHAVGRYALVLCVIGYLAGLVKPESGQVRSATGPMAVVVAAAVGSTLLYAGVGALVGDTAARHVGLGGLLFSAALYDLLLAPFVVPGVMALARRAENDPLAESNSATSADLASGWSSGGTGLRIGAQRGLRAKAARARVARAGRIKGVKRL
>NZ_CP023697.1|WP_055608409.1|2699079_2700021_-|rod-shape-determining-protein-MreC
MRDTRESRLLLVLLITTAFALITVDIRGGEDSPVDGARRAAATVFGPIENGVSGAVDPIGNAVAAVRDSGDRHDRLAALERENTALKAELGSDDRNRSRSKQLDRMLKVAGQGQYGIKGAQVIAIGAAQGFSWTITIDVGADDGIERDMTVLNGDGLVGRVTTVGPHTATVLLANDPDFTVGTRMEAGDELGFASGQGDRPLRVELLNGKAEIKKGDRLITFGSQADKPFVPGVPVGTVSRVDPSGGGLTRTLYVTPFVGFTKLDVVGVVVQAPKKDPRDTVLPEKPKPTPTPTVTVTVTPSAPADGQPQQEQ
>NZ_CP023697.1|WP_055570721.1|2700242_2701262_-|rod-shape-determining-protein
MSFIGRDMAVDLGTANTLVYVRGRGIVLNEPSVVAINTNTGGILAVGSEAKKMIGRTPGNIVAVRPLKDGVIADFEITERMLRYFILKIHKRRHLARPRVVVCVPSGITGVERRAVIEASSQAGARQVHIIEEPMAAAIGSGLPVHEATGNMVVDIGGGTTEVAVISLGGIVTAQSIRVAGDELDNAIIQYVKKEYSLLLGERSAEQIKLTIGSAYDLDSDEHTEIRGRDLVSGLPKTVVISAGEVRKAIEEPVNSIVDAVKTTLDKCPPELSGDIMDRGIVLTGGGALLRGLDERLRRETGMPIHIAEDPLDSVALGSGKCVEEFEALQKVLDAQPRR
>NZ_CP023697.1|WP_150475226.1|2702162_2703722_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MSDLPPNGTPGDPDDRPDPLYPLDSSDSLDSFEEIIEAETQRDPDLAVIEAGSRTLRTQGGPPESDVPARPEDPEADKALREVEGELAGRWGETKLEPSLDRVAALMDVLGEPQRAYPSIHITGTNGKTSTARMIEALLGAFELRTGRYTSPHVQSVTERISLDGAPVSAERFVETYRDIAPYVEMVDARQEHRLSFFEVLTGMAYAAFADAPVDAAVVEVGMGGSWDATNVIDAGVAVVMPIDLDHTDRLGTTPAEIATEKAGIIKPDATVIMAQQPVDAAQVLLRKAVEVGATVAREGLEFGVVTRQVAVGGQQLTLRGLGGEYPEVYLPLHGAHQAHNAAVALAAVEAFFGVGAQRAEPLDIDTVRKAFAAVASPGRLEVVRRSPTVVLDAAHNPAGARAAAGAIGEAFQFSRLIGVVGASGDKNVRGLLEAFEPVFAEVVVTQNSTHRAMDADELAGIAVEVFGEDRVQVEPRLPDALEAAITLAEEEGEFTGAGVLVTGSVITVGEARLLLGKG
>NZ_CP023697.1|WP_055609063.1|2703822_2706444_-|valine--tRNA-ligase
MTENSQQPQPPTSELPTQYAPADVEGPLYERWVERGYFEADAKSDKPPFTVVIPPPNVTGSLHLGHAFEHTLIDAMTRRKRMQGFETLWQPGMDHAGIATQNVVERELGKEGKSRHDLGREAFVERVWQWKGESGGQISGQMRRLGDGVAWSRERFTMDEGLSTAVQTIFKRLHDDELIYRAERIINWCPRCLTAISDIEVDYQEDDGELVSMKYGDGDDTIVVATTRAETMLGDTAVAVHPEDERYQHLVGKLIKLPLTDRSIPVVADEHVDPEFGTGAVKVTPAHDPNDFEIGRRHDLPSLTVMDEHAVITVHGPFQGLDRLEARSAIVAALRAEGRIVAEKRPYVHSVGHCSRCKTTVEPRLSMQWWVKVGPLAKAAGDAVREGKVKIHPQEMEKRYFDWVDNLHDWCISRQLWWGHRIPVWYGPDGEVVCVGPDEEAPSGEGWHQDTDVLDTWFSSGLWPFSTLGWPEQTESLAKFYPNSVLVTGYDILFFWVARMMMFGLYAMDGTPPFHTIALHGMVRDQFGKKMSKSFGNAVNPLDWMDKYGSDALRFTLARGANPGVDVPIGEDWVQGSRNFANKIWNATRFALMNGATVDGPLPDASEMSSTDRWILSRLNSVVAEVDAHYEDFQFAKLSDALFHFAWDEVFDWYVELSKTTFQAGGEPAEVSKRVLGEVLDVTLRLLHPVVPFVTETLWTTLTGGESVVIADWPADSGFRDAGAEREIGTLQSVITEVRRFRADQGLQPGQRVPARLSLDGSALAPHEAAIRQLLRLQPEGDAFTATATLPVAGVEVALDLSGVIDFEAERKRLTKDLEAARKERGQAEAKLGNEAFLAKAPDHVVDKIRTRLAKADEDIARIDAQLERLPKA
>NZ_CP023697.1|WP_055609064.1|2706582_2707518_+|hypothetical-protein
MSYNQPGPYGGQPQQPGPYGQPGPYGQQPQAPQPGYGYPQQPQAPQPGYGYPPQPGQGVPPQQPPYGQAPYGAPQTPPPGNSSKKAGWIIGAVAVVAAIGVAVYFVVGGGGGAGGLEDDGPHKLSAPKKVMDEYTRVGEGGEDASSGTTKDLAKGGVKNGKSVGAQYSTADFSDYDPQNPDPADIPGKEELLTAKGVTFIGAYGEVEDPEAAVDKLFANIKKETKENSSNELMTELVGEPEAVDLDGAVMKCQAGKGNNNLTQKATTNWFCIWADYSTVAVVSPGDNTKDITKDAAADITTKLRDDVRVPA
>NZ_CP023697.1|WP_055609065.1|2707640_2708927_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQESAKKALSVAVYNHYKRVQAGENGGAQSREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEKIIEGRAGAKGIGFGATIRSKREIESKDQFEQVMPEDLVKFGMIPEFIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQGVMYEVPSRKDVARVVITADVVLSNVNPTLIPRDARGRGPGEQKTA
>NZ_CP023697.1|WP_055609066.1|2709116_2709797_-|ATP-dependent-Clp-protease-proteolytic-subunit
MNDFPGSGLYDRARAEYTGPAAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRSQLEDMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQIITTRKMDNSSLR
>NZ_CP023697.1|WP_055609074.1|2709912_2710521_-|ATP-dependent-Clp-protease-proteolytic-subunit
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLASDPDKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDDVMTTAAGMPGGGGTGAA
>NZ_CP023697.1|WP_055609067.1|2711016_2712438_-|trigger-factor
MKSAVETLNPTRVRLTVEVPFEELKDSLDAAYKKINQQVTVKGFRKGKVPARVIDQRFGRGAVLEEAVNDALPKFYTDAVNEAELNPLGQPEVDITELKDGETLNFTAEVDIRPTIEIPDYSGIEVEVDAVEVTEEDVDKAVEELRERFASTAPVERAAEDGDVVTIDLEAKVEGEVLEDGIANGVSYTIGSGELLDGVDAAVTGLSADQEATFTSELKGGSAAGKEAEVTVKVTQVAKRELPELDDEFAQMASEFDTLEELRADSRKRLENMKQYDQATQAQERVLDKLLELVEVPVPEKLLEDEINTRKHNLEHHQLGQMGLDLEKYLEIQGKTAEEFDTETREAAVKGIKTQFVLDQLVNQEKLNVNQEELTEHLMRRAASSGMSPDQFAQAVVEGGQVPLLVGEVARGKALASVVEKATVKDTNGEIIDLEDEEEDETAEAPVADAADETPADDKAEAKAGKAEEKTEG

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Crispr_ID: NZ_CP023697_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023697_5

3743578-3743675

Orphan

Consensus_repeat	Method
CCTGGCAGAAGTCGTCGTACTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023697_5

>merge|NZ_CP023697|5|3743578-3743675|CRISPRCasFinder
CCTGGCAGAAGTCGTCGTACTGCGGCGATGGCGACTCCTGCGTCCATATAGCCGCCACCACACCGTCCGTCACCGCCTGGCAGAAGTCGTCCTACTGC

>NZ_CP023697|5|6|3743578-3743675|CRISPRCasFinder
CCTGGCAGAAGTCGTCGTACTGC	GGCGATGGCGACTCCTGCGTCCATATAGCCGCCACCACACCGTCCGTCACCG
CCTGGCAGAAGTCGTCCTACTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023697.1\|WP_055606033.1\|3746852_3748412_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_150475315.1\|3752161_3753088_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP023697.1\|WP_055606032.1\|3748425_3749838_+\|ATP/GTP-binding-protein	unknown	unknown	gnl\|CDD\|315512
NZ_CP023697.1\|WP_095534460.1\|3737676_3738186_+\|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376835
NZ_CP023697.1\|WP_055606036.1\|3742708_3743554_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379262
NZ_CP023697.1\|WP_055606031.1\|3749855_3751466_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236768
NZ_CP023697.1\|WP_055606043.1\|3740892_3741897_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381602
NZ_CP023697.1\|WP_150475317.1\|3753890_3755276_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP023697.1\|WP_150475316.1\|3753084_3753885_+\|ABC-transporter-permease	unknown	unknown	unknown
NZ_CP023697.1\|WP_055606034.1\|3745527_3746856_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_167532559.1\|3739713_3739887_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055606044.1\|3738637_3739501_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055606038.1\|3739989_3740682_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239480
NZ_CP023697.1\|WP_055606035.1\|3744710_3745538_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_042174769.1\|3744200_3744509_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055570475.1\|3736818_3737439_-\|DUF47-domain-containing-protein	unknown	unknown	gnl\|CDD\|224310
NZ_CP023697.1\|WP_055606037.1\|3742092_3742503_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP023697.1\|WP_055606030.1\|3751476_3752061_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP023697.1\|WP_055606041.1\|3735811_3736810_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP023697.1\|WP_055606039.1\|3738255_3738492_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023697.1\|WP_150475315.1\|3752161_3753088_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	8.41136e-92
NZ_CP023697.1\|WP_095534460.1\|3737676_3738186_+\|metal-sensitive-transcriptional-regulator	gnl\|CDD\|376835	pfam02583, Trns_repr_metal, Metal-sensitive transcriptional repressor. This is a family of metal-sensitive repressors, involved in resistance to metal ions. Members of this family bind copper, nickel or cobalt ions via conserved cysteine and histidine residues. In the absence of metal ions, these proteins bind to promoter regions and repress transcription. When bound to metal ions they are unable to bind DNA, leading to transcriptional derepression.	2.15322e-36
NZ_CP023697.1\|WP_055606036.1\|3742708_3743554_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	6.65775e-10
NZ_CP023697.1\|WP_055606031.1\|3749855_3751466_+\|hypothetical-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	1.58249e-08
NZ_CP023697.1\|WP_055606043.1\|3740892_3741897_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381602	cd13399, Slt35-like, Slt35-like lytic transglycosylase. Lytic transglycosylase similar to Escherichia coli lytic transglycosylase Slt35 and Pseudomonas aeruginosa Sltb1. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.21939e-31
NZ_CP023697.1\|WP_150475317.1\|3753890_3755276_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.35197e-31
NZ_CP023697.1\|WP_055606032.1\|3748425_3749838_+\|ATP/GTP-binding-protein	gnl\|CDD\|315512	pfam12846, AAA_10, AAA-like domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.	1.79098e-10
NZ_CP023697.1\|WP_055606037.1\|3742092_3742503_-\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	7.56112e-14
NZ_CP023697.1\|WP_055606038.1\|3739989_3740682_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239480	cd03385, PAP2_BcrC_like, PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from Bacillus subtilis posesses undecaprenyl pyrophosphate (UPP) phospatase activity, and it is hypothesized that it competes with bacitracin for UPP, increasing the cell's resistance to bacitracin.	9.88019e-20
NZ_CP023697.1\|WP_055570475.1\|3736818_3737439_-\|DUF47-domain-containing-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	1.8834e-32
NZ_CP023697.1\|WP_055606030.1\|3751476_3752061_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.94689e-15
NZ_CP023697.1\|WP_055606041.1\|3735811_3736810_-\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	5.88491e-101

>NZ_CP023697.1|WP_055606036.1|3742708_3743554_+|helix-turn-helix-domain-containing-protein
MRTRPTGRQLRLGVELRKLRERAGLTATEAGQLLGVKQNQISNTEAGRIGVSPERVRTLAHHYDCTDASLIDAIAGMTGERKRGWWEEYRQLLPAALLDMAELEHHATRLRTAVTVHIPGLFQTTEYAREIFRQAVPELPPPDVEHRVSFRIKRQAVLFRNPPTPQQVIIHEAALRMKFGGPEVTREQLKYLLTMSEQNHIAIHVIPFDAGTFAGSGQSIYYAEGPVPQLDTVNLDQSHGPVFLDAEAQLHKYRVLLDRLEATALTPEASQPFLHRILKDL
>NZ_CP023697.1|WP_055606037.1|3742092_3742503_-|ATP-binding-protein
MPTVTPPWSYALQLPHDPRAPRIARVTLRAVLGEHGLGELVPAAELVAAELLANAQLHTTGPYALRLRAVEPGRLRLGVWDTDPRVPPGLTEAVPPGAPPDDSENGRGLPLVRAYASAWGAGVVGGGKVVWAECGG
>NZ_CP023697.1|WP_055606043.1|3740892_3741897_-|transglycosylase-SLT-domain-containing-protein
MRKAWIAVGVAGGSAIAFVMLLAVGVYVVAGNLAGGVGGGAAKTLAKGAVPAEYQKLVATWGNLCPAINPALLAAQLYQESGFNPKAQSHAAAQGIAQFIPGTWATHGVDGDGDGDRDVWDPKDAIPSAATYDCALAGYVKDVPGNPTENMLASYNAGAYAVIKYSGVPPYKETQNYVQRILSLEKSFAAPVGRVDPSKQAAGAIAYAQKKLGTLYLWGGNGTADQGGRFDCSGLTKAAYESVGITLPRVANDQYNAGPHPARDELLPGDLVFFSDDLTNSRAIRHVGIYVGGGYMINAPRPGAVIRFDPIDTPDYFGATRVTEDGAKALPTTV
>NZ_CP023697.1|WP_055606038.1|3739989_3740682_-|phosphatase-PAP2-family-protein
MAGLADSGSNPDVDLLYDINGLAKAAPPWFDHVMEFVGEFGLLFALLGMLVWCWWGVRKRGGEDAAPTVAALVWAPLAAGIAVLINVPIREFVERRRPFYDHEGLEVLVDGKTDYSFVSDHATLCMALAVGLFLANRRLGMIGLFFGVLGGFIRVYMGVHYPTDVVGGLALGTSVALLLSPPAMALLTPLMRSIEQSRRGAWLIKDARADDRVTPGEARSSGTGRRDLAA
>NZ_CP023697.1|WP_167532559.1|3739713_3739887_+|hypothetical-protein
MEQQSTKEHSPGHSPEHLITTAELGPFCFARCSCGWRGPARRARSLARTEGRKHVMG
>NZ_CP023697.1|WP_055606044.1|3738637_3739501_-|hypothetical-protein
MAGRRPRRARIGDAVVVLGVAGGLALAGVSGCGRSGAADGDGDGGTAAGEVAAAVREAADALVDAGSSKARTSMELATGGTRVTIRGEGVYDYRKRIGRLRVLLPQDPSGAPVSRSVTELLAPGALFMKNRGAGVPADKWVRVDTGTLSDGNLVTGGATDPFTAAELLRGARTATFVGRTELAGAGVRHYRGTSDLREAARVASDGDKRSLGAAARGFATAEVPFDVYLDDEGRIRKVRHRFSFVNGEREQPVAVASTTLLYDFGAPVDVRLPEAGDIYEGRTTAEE
>NZ_CP023697.1|WP_055606039.1|3738255_3738492_-|hypothetical-protein
MDEVTCVAPLGGGLVQDHVALAEIELCGELIIAASAAQGPLSLESIDKVLRVAEVRTEPVAGTWTRRPYRPEPYRSGA
>NZ_CP023697.1|WP_095534460.1|3737676_3738186_+|metal-sensitive-transcriptional-regulator
MTTTETGADVPPSPDGPDVTRVTAAAGTKSVTAAQNVTDPTDDSPGVSLTPDPAPASEPGSGPGSASGVVTDHDRGIHGYHHEKQEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALRLLEEHLRHCVADAALKGGDEIDAKVKEATQAIARMLRT
>NZ_CP023697.1|WP_055570475.1|3736818_3737439_-|DUF47-domain-containing-protein
MRFRLTPRETSFYDMFAASADNIVTGSKLLMELLGADTPARGEIAERMRAAEHAGDDATHAIFHQLNSSFITPFDREDIYSLASSLDDIMDFMEEAVDLVVLYKVEELPKGVDQQIEVLVRAAELTAEAMPNLRTMDNLTEYWIEVNRLENQADQIHRKLLAHLFSGKYDAIEVLKLKQIVDVLEEAADAFEHVANTVETIAVKES
>NZ_CP023697.1|WP_055606041.1|3735811_3736810_-|inorganic-phosphate-transporter
MDTFALIVTIGVALFFTYTNGFHDSANAIATSVSTRALTPRVALAMAAIMNLAGAFLGSGVAKTVSEGLIQTPEGSTGMGILFAALVGAITWNLITWYYGLPSSSSHALFGGMVGAALAGGTTVYWDGVLSKIIIPMFVSPVVGLVAGYLVMTGIMWMFRKSNPHKAKRGFRIAQTVSAAGMALGHGLQDAQKTMGIVVMALVIADVEEYSDPIPVWVKLACALMLSAGTYAGGWRIMRTLGRKIIELDPPQGFAAEATGATIMFGSAFVFHAPISTTHVITSAIMGVGATKRVNAVRWGVAKNIILGWFITMPAAALVAAASYGLVYLAFL
>NZ_CP023697.1|WP_042174769.1|3744200_3744509_+|hypothetical-protein
MFFAADEGDINTIIGGIAPDWGPFGSLGNEAKVMIEVVMALAILICLGIAIWGAAKQRIGATALRDTFSAEQGKGLIIAGLTGVFIIGSLGTVFTIVYGMAV
>NZ_CP023697.1|WP_055606035.1|3744710_3745538_+|hypothetical-protein
MSLGDEYENTGGYGGTGQTRTRMPDSGGGPHGGGRRSGRTSSRSLVMVVGVVVLLIAAIAFANRGGDASSTDETDDSPQTAATAPSGEKPVRSKNAGIPSGFAHDRQGAESAAANYAVALGSDGMFSPTRRREIVQAIADPSTRDRLQGGFDADYSADLLKSIGLTANGAAPEGTTFVNRTLPAGTKATAFNQNSATVEVWCNGLFGLAGDSSTNPVTSSWFTVTMKLNWSGDDWRVLETTQKSGPTPVPGDSPVSRAEDMSKVVEEFGGLTYAR
>NZ_CP023697.1|WP_055606034.1|3745527_3746856_+|hypothetical-protein
MPGNRRLLRLTGIIAAVQASAIVFATRAFAEPTPAPSGSDDPCSLIAGPAKEYCDRDGEGGSSRRSGTVADPVSALDPLGSLAQGCADAASWTIKKLSAAVDETAAVDFTNPTFLKQYGVVFAASTILTLILWLMAVAKRAVRGVPLTTALSEAIGFLWLTVLASAFTPLILYTVVRATDGVTEVLANATGDQTSTFFGTFAGALEKGEDIGGGPIMLIVVSLVSIVAAGVLWLELVIRAALLYVGALLGTVVYAGLVDKNLWGHVRRWAGIMIAVILVKPVIVIVLGLAGALSNEDGPNAFSAVVSGLAIILLAIFASAMIYRFVPGFGDEIANSRNNRLMQGAEGKAAAVMSSPATMVAQGIKTHSTRADNHGGGGGRSSGGGRPSNPASGGVAAHSARTSNGGGGAVPSAAPAPRQGSPVSTPHGNRNSSNNSTGGEGR
>NZ_CP023697.1|WP_055606033.1|3746852_3748412_+|hypothetical-protein
MTTEAHVSHPVTPRRTYLIGRARPNAIVGRNRETGEIALIVLGAFLGMMAGLLVPVLSLRIVLLAGLPMIALAAVYVPYKGRTFYKWFEINRSYKRSLRQGTTYRSGVVEAGVRLDGREVEVGPPPGIGRITWLAAPFGPDEIAVQLHADRKTVTAAIEIEGPGVGLRDSEDQEALVDRFGTLLKHVANGDGFVTRIQMLARTLPADPDAHAKDVSQRGDEKAPYWLQQSYDQLQSMVSTSSEQHRAYLVACMHYTRELAAEANAMARAVRTQGRRKVDRDAGLAVVMARELTDICSRLQEADIRVRQPLGQSRLSSLIHSMYDPDHPIDHIQAMTKRNAWPAELDAMEPTYLQAKTRESSTRAPWCHATAWIKEWPMTPVGVNFLAPLLVHTPDVIRTVAVTMDLEPTEVAIERMLTEKTNDEAEASRAAKMNRTVDPRDIAAHGRLDQRGEDLASGAAGVNLVGYITVSSRNPEALARDKRTIRASAGKSYLKLEWCDREHHRAFVNTLPFATGIRR
>NZ_CP023697.1|WP_055606032.1|3748425_3749838_+|ATP/GTP-binding-protein
MRDPLSVVTDAFTSFLFGKVETTRLPVRTSTGQAQAVYLPTAAPGLGDSGVIIGREVYSGKGYIYDPFQLYGQQLPAPHWLVLGESGNGKSALEKTYVMRQLRFRDRQVVVLDAQGEDGVGEWNLIAQELGITPIRLDPTAALDHGIRLNPLDPSITTTGQLALLRTIIEVAMGHGLDERAGFALKVAHAYVTETIVERQPVLTDIVERLRHPEAESAEAMNVAIDDVRAWGLDVALVLDRLVDGDLRGMFDGPTTVGIDLDAPLIVFDLSHIDRNSIAMPILMAIVGVWLEHTWIRPDRKKRIFLVEEAWHIINSPFVAQLFQRLLKFGRRLGLSFVAVVHHLSDVVDGAAAKEAAAILKMASTRTIYAQKADEARATGRVLGLPRWAVEIIPSLTPGIAVWDVNGNVQVVKHLITDTERPLVFTDRAMTESSLDLAAGDALRAAELEAEQRAAAFVEQHVGDSESTVA
>NZ_CP023697.1|WP_055606031.1|3749855_3751466_+|hypothetical-protein
MRPDGHGGGQAGGQGRNGQGGIPDGLLVGLLAFLLGITLLVWTATGLAALFARGSWPSGVTFADTPVAMRRLVAEPHDVPGAWPDTPASALSGYGLFWGLFIGQLMLLTVLTVFVLGTLARWRAVRARRKAERAAGRAAAATAATTAAPEPEPKSGAEPKPGPEPVQHEVPAPRTTPEPAPGPGPEPVRARETAPLPVPVPPREAALAETSPLPADSAAPVVLSKVPAAPRPVFYGTPDARHTTAAAAVRDAEGPLLVLTSNPALWEETKDGRAKLGPVHLYDPTHRCDTPARLHWSPMSGCEDKDTAVARAAALLAPVRPASRLDQAVGDTAQLLLRSYLHAAAVDGRTVRHLHRWAQGTQVQDAVRILRTHPKAAPGAAGELEATLTAYPERRDIAQQLTTRALAALSTVNVREACTPDRTDALALGSFVHEGGTLYVVGESIEDPRTRPGAMPLLTALTASVVEHGRRMAERSSFGRLDPPFTLVLEDVAAVAPLPRLPDLLATCPDRGMPVLALLRSREQSRSRWPHDEFPA
>NZ_CP023697.1|WP_055606030.1|3751476_3752061_-|GNAT-family-N-acetyltransferase
MGTTRSGEAVGTAFGEYAVRPVRVGEWAAVKALRLAALRDPVADIAFLDTYEKAVAQPDTHWRERTARAAEGADGMRQFIAGTADGTLVGTVTVLVEEPGTTDLAGFPVERRQGHLVGVFVRPGHRGKGLTEVLFEAALEWAWEVGVERVRLIVHPDNARALGFYRKAGFVESGITLPLAGNPDGHELEMVIER
>NZ_CP023697.1|WP_150475315.1|3752161_3753088_+|ATP-binding-cassette-domain-containing-protein
MITAQELTKRYGDRTAVTDLSFTVRPGTVTGFLGPNGSGKSTTLRMILGLDAPTRGHATVSGRSYAAHPAPLTEVGALLEARSVHPGRTARHHLRALAHTHGIPGSRVEHVLARTGLTEVAHRRVKGFSLGMGQRLGIAAALLGDPAALVLDEPVNGLDPEGVLWIRTLLKSLAAEGRTVLVSSHLMSETALTADHLIVIGRGRLLADTTVADFVRRSGAGTVKVVTPDAAALAGLLTAPGVTVTADASGSLTVRGTDAGHIGRTAAAHGIPLYELTPSTASLEEAFMHLTHDTVEYTATAPAEGAAA
>NZ_CP023697.1|WP_150475316.1|3753084_3753885_+|ABC-transporter-permease
MTTTATAPLTATPAYRVTPARVLRSEWHKLWTLRSTWITLAATTALTLGMGAGISAAYDGSGEGGLDTVVFVLLGTQFATVNLAVLGILATAGEYSTGQIRATMTAVPRRLPVLWSKAAVLAAVAFVLSLWTNLLTFPLAQSFLTGTDQAAALGDPGVLRGLAGNAAGLALLTVLALGLGAVARSVPLATGAYIGLVMVVPEVLRMLPYAVVDDAVRYFPSKALESLTAAQHGPDAAAPGAALLALTLWAAASLAAAAVTLRRRDV
>NZ_CP023697.1|WP_150475317.1|3753890_3755276_+|sensor-histidine-kinase
MTPDVFRPTDGSPTMGPVANDDRKTPATERPTEQPADRPVDQSVDRSADRPVEPLAQYVQHLNQRVRAFDRRHPLLWDLHFTGFWVTAALIDYAGGGWRNVTHNPDTPGVLLLSLSLGLSVPLLWRRTHPAAVLLAMAPFAFVNAWTGTALQAALLQLVAVYHIALRLPLRNLWWATALVLAPVAVSTARHGEEGSWSQQIGSQLTSLVVVALIGITVRTRQNHTEALEDRARRLEIERDQQAQLATAAERARIAREMHDIIGHNLSVITGLADGGKYAATRSPERAAQALDAIGTTSRQALGELRRLLDVLRDDETAHRPAELTPQPTLTDLEQLIDGVRAAGLPVHSTVEGRADLPAGRQLTVYRVIQEALTNTLKHAGPNTTAEITLVHGGRGSVTATITDTGTITGTTGKETPADGRGLPGMRERTALYGGTLKAGPRPHPEQGWRVHLHLPEETPQ

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Crispr_ID: NZ_CP023697_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023697_6

4001192-4001345

Orphan

Consensus_repeat	Method
CCGGCGGCGGCCAGCAGGGTGGCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP023697_6

>merge|NZ_CP023697|6|4001192-4001345|CRISPRCasFinder
CCGGCCGCGGTGGCCAGGGTGGTTACAGCGGTGGCGGCAACCAGGGTGGTGGCAGCTGGGGCGGAGGCTCCGGCGGCGGCCAGCAGGGTGGCGGCGCTCCGGCCGACGACCCCTGGGCATCCGGCGCTCCCGCCGGCGGCCAGCAGGGTGGCGG

>NZ_CP023697|6|7|4001192-4001345|CRISPRCasFinder
CCGGCCGCGGTGGCCAGGGTGGTTA	CAGCGGTGGCGGCAACCAGGGTGGTGGCAGCTGGGGCGGAGGCT
CCGGCGGCGGCCAGCAGGGTGGCGG	CGCTCCGGCCGACGACCCCTGGGCATCCGGCGCTC
CCGCCGGCGGCCAGCAGGGTGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023697.1\|WP_055605421.1\|4000462_4000753_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP023697.1\|WP_055605417.1\|4004056_4005541_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP023697.1\|WP_003949403.1\|4001466_4001703_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP023697.1\|WP_055605427.1\|3990713_3991796_-\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
NZ_CP023697.1\|WP_167532563.1\|3992920_3995614_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP023697.1\|WP_055605411.1\|4010649_4011522_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|380091
NZ_CP023697.1\|WP_055605418.1\|4002261_4003599_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NZ_CP023697.1\|WP_055605428.1\|3989354_3990617_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP023697.1\|WP_055605425.1\|3995712_3997221_+\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|227937
NZ_CP023697.1\|WP_055605416.1\|4005997_4007383_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP023697.1\|WP_055605422.1\|3999829_4000144_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055605412.1\|4009930_4010356_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377163
NZ_CP023697.1\|WP_055605426.1\|3991839_3992523_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP023697.1\|WP_055605419.1\|4001721_4002168_+\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP023697.1\|WP_055605424.1\|3997421_3998453_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|376473
NZ_CP023697.1\|WP_055605423.1\|3998544_3999666_-\|peptidoglycan-bridge-formation-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224
NZ_CP023697.1\|WP_055605415.1\|4007476_4007929_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP023697.1\|WP_055605413.1\|4008575_4009784_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP023697.1\|WP_055605429.1\|3988726_3989230_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370723
NZ_CP023697.1\|WP_055605414.1\|4007967_4008432_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670

Protein	Function_ID	Function_description	E-value
NZ_CP023697.1\|WP_055605421.1\|4000462_4000753_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	3.35384e-40
NZ_CP023697.1\|WP_055605417.1\|4004056_4005541_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP023697.1\|WP_003949403.1\|4001466_4001703_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	9.24137e-38
NZ_CP023697.1\|WP_055605427.1\|3990713_3991796_-\|inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
NZ_CP023697.1\|WP_167532563.1\|3992920_3995614_+\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	9.18354e-135
NZ_CP023697.1\|WP_055605411.1\|4010649_4011522_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|380091	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain. This entry represents a likely acetyltransferase enzyme that is related to pfam06852.	2.07013e-25
NZ_CP023697.1\|WP_055605418.1\|4002261_4003599_-\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.80158e-114
NZ_CP023697.1\|WP_055605428.1\|3989354_3990617_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.87847e-39
NZ_CP023697.1\|WP_055605425.1\|3995712_3997221_+\|DUF2029-domain-containing-protein	gnl\|CDD\|227937	COG5650, COG5650, Predicted integral membrane protein [Function unknown].	8.49111e-43
NZ_CP023697.1\|WP_055605416.1\|4005997_4007383_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.9245e-56
NZ_CP023697.1\|WP_055605419.1\|4001721_4002168_+\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	4.4152e-63
NZ_CP023697.1\|WP_055605412.1\|4009930_4010356_+\|heme-binding-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	3.24172e-30
NZ_CP023697.1\|WP_055605426.1\|3991839_3992523_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.23465e-19
NZ_CP023697.1\|WP_055605424.1\|3997421_3998453_-\|alanine-racemase	gnl\|CDD\|376473	pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain.	2.80667e-08
NZ_CP023697.1\|WP_055605423.1\|3998544_3999666_-\|peptidoglycan-bridge-formation-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	3.6986e-35
NZ_CP023697.1\|WP_055605415.1\|4007476_4007929_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.0389e-19
NZ_CP023697.1\|WP_055605413.1\|4008575_4009784_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.48328e-96
NZ_CP023697.1\|WP_055605429.1\|3988726_3989230_-\|hypothetical-protein	gnl\|CDD\|370723	pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076). This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins.	0.00190405
NZ_CP023697.1\|WP_055605414.1\|4007967_4008432_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.98596e-14

>NZ_CP023697.1|WP_055605421.1|4000462_4000753_+|30S-ribosomal-protein-S6
MRHYEMMVILDPDLEERAVSPLIENFLSVVRDGGGKVEKIDTWGRRRLSYEIKKKPEGIYSVIDLQAEPAVVKELDRQMNLNESVLRTKVLRPENH
>NZ_CP023697.1|WP_055605422.1|3999829_4000144_-|hypothetical-protein
MTQALRPNTAGGLFATDGKPHPVQHALLAVTLVLGITSFIAAMFHHLHLLSSWAGLAGILTGAYGQWISETTRERFGLIVGLGAAAIGFFLGMSQGGLFGGLID
>NZ_CP023697.1|WP_055605423.1|3998544_3999666_-|peptidoglycan-bridge-formation-glycyltransferase-FemX
MSLTLRTISREQHLAYIQSLPSASHMQVPAWSDVKAEWRAENLGWFDDRTGEMVGAGLVLYRQLPKIKRYLAYLPEGPVINWFAPNLQDWIEPMLAHLKQQGAFSVKMGPPVIIRRWEAVTIKKGIQDPDVKRLRDLEADFIEPRAFEVADKLRRMGWQQGEDGGAGFGDVQPRYVYQVPLANRSLEEVHKNFNQLWRRNIKKAEKAGVEVVQGGYDDLPEWQRLYEITAVRDHFRPRPLSYFQRMWTALNTEDPNRMRLYFARHNGVNLSAATMLIVGGHVWYSYGASDNIGREVRPSNAMQWRMLRDAYALGATVYDLRGISDSLDETDHLFGLIQFKVGTGGQAAEYLGEWDFPLNKLLHKALDMYMSRR
>NZ_CP023697.1|WP_055605424.1|3997421_3998453_-|alanine-racemase
MALTLYVDTARWRAHHKHVQQQFPGLVPVCKGNGYGFGHGRLAEEATRLGSDVLAVGTTYEAARIKDWFGGDLLVLTPYRRGEEPVPLPDRVIRSVSSVDGVYGLVGARVVIEVMSSMKRHGVGEQDLPQLHSAIENVRLEGFAIHLPLDRTDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLKAEELSRLQQQFPQTRFRARIGTRLWLGDHEATEYRGAVLDVTRIAKGERFGYRQQKAASDGFLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAGLATVNRNLSPFVWAGKQRWFAEPPHMQVSILFVPSDAPEPQVGEELVAHLRHTTTQFDRILDR
>NZ_CP023697.1|WP_055605425.1|3995712_3997221_+|DUF2029-domain-containing-protein
MCGMPSGESTQASVHEPELVVPTREDKVAKAGSELIGGPLGRRALLGTSWWSPVRVVVLVAIGMFTLGLVQKAPCYNGAWFFGAGSQYTHACYSDIPHLYQGRGFADGLVPYFDQLPGDMQYLEYPVLTGVFMEVASWLTPGSGSIQDQEQWYWMVNAGMLMVCAAVIAVCVTRTHARRPWDGLLVALAPAFALTATINWDLLAVALTAAAMLMWSRSRPLAFGVLLGLATAAKLYPVLLLGPLLVLCWRAGRWREFGKALGGAVVAWAVVNGPVMFFAYDGWSKFYTFSQERGVDFGSFWLIIAQNSSDPLSTETVNTLATLLMLLCCAGIAALGLAAPRRPRFAQLAFLVVAAFILTNKVYSPQYVLWLVPLAALARPKWRDFLIWQACEVAYFLGIWMYLAYTTSGDAHKGLPADGYHWAIALHLLGTLYLCVMIVRDILMPDRDPVRRAGDDDPSGGVLDRAEDTFTLGPAARPARDSAQVDGAQVEWGKADAPGGSL
>NZ_CP023697.1|WP_167532563.1|3992920_3995614_+|penicillin-binding-protein
MSEHRRKLPQSQEGGRAAARRGQSGSSSGRRAAPRGATGSPSDSYGSDSRDSGGEGHTYGSRAEARRAAQRGGGRRAGPTGPGRGRPAPTGNKRIIDYPRHDKYGWRRWMPSWKLVTGLCIAFFGSMVAAAGIGYAMVSVPNIAKTAEAQNNVYYWADGKQMVATGGERNRQIVNLEQIPKAMQNAVIYQENKTFYDDNGIDPRGIARAMLNMATGGETQGGSTITQQYVKNAMLDDQSQTLSRKFKEMFVSIKVGTTVDKDEILKGYLNSAYYGRGAYGIQAAARAYFDKEAIKLNEGECAFLSAVLKGATYYDPAGATSIDPGATPEANKKRALTQMQDTLDKMVESDRLDPATRAKYTKLPKVQNPRSNTALSGQIGYLVDLAKAYIVNNSDDTGITARQLEQGGYSIYTTFDRKKVEELEKAVNKVYKKNIKPDERPDTDTHVQFGGASVDPATGAIKAIYGGTDATKHFTNNADATGAQVGSTFKPYVLAAAMQWGVRDPDGDPVQAQDERTQVSEKSLYSGKNKLKIKEYDGSIWQNEKGEQWEQVNDGDETRGTAPDYKIDLREAMQYSVNSAFVQLGVDVGLDKVKSAAVESGILKNSLAGANYPSFSLGTSSPSAIRMAGSYATFAASGDQRDPFSVKRVTKEGETVYTHRIKTKQAFTAKVADNVTDVLKTVVEEGTGSNAQLEGREVAGKTGTTDGNKSAWFVGYTPQLSTAISMFRYPDDETIKNRQFLEMYGTGDQESIHGASFPSEIWAAYMEEALKGQKSVPFPTPEPIGEIVNNTPSPTASPSPTETEEETPSASPTTSEPEPETSRPTPSETATCRVFDFNCEDEDDTGGTGPGGADVGGTDGGVTSSPSASPTEEEDTSRGNGNGNGGGNGSFFGGPAG
>NZ_CP023697.1|WP_055605426.1|3991839_3992523_-|PadR-family-transcriptional-regulator
MSRRSGILEFAVLGLLRESPMHGYELRKRLNTSLGVFRAFSYGTLYPCLKTLVANGWLIEEPGNTTEDALAAPLTGRRAKIVYRLTADGKEHFEQLLSQTGPDAYEDETFAARFAFFGQTSRDVRMRVLEGRRSRLEERLEKMRASLVRTRERLDDYTLELQRHGMESVEREVRWLNELIESERAGRDLKGPGSGATPRQDTTTGTSGDLPRSGDDPRTGSPDDTAT
>NZ_CP023697.1|WP_055605427.1|3990713_3991796_-|inositol-3-phosphate-synthase
MGSVRVAVVGVGNCAASLVQGVEYYKDADAASKVPGLMHVQFGDYHVSDVEFVAAFDVDAKKVGLDLADAIGASENNTIKICDVPSTGVTVQRGHTLDGLGKYYQATIEESAEEPVDVVQVLKDKQVDVLVCYLPVGSEDAAKFYAQCAIDAKVAFVNALPVFIAGTKEWADKFTEAGVPIVGDDIKSQVGATITHRVMAKLFEDRGVVLDRTMQLNVGGNMDFKNMLERERLESKKISKTQAVTSQIPDRDLGEKNVHIGPSDYVPWLDDRKWAYVRLEGRAFGDVPLSLEYKLEVWDSPNSAGVIIDALRAAKIAKDRGIGGPILSASSYFMKSPPVQYFDDEARANVEKFIAGEIES
>NZ_CP023697.1|WP_055605428.1|3989354_3990617_-|MFS-transporter
MAVVRDLRVLLRFQGFRRLLAVRLLSQGADGVFQVALASYVVFSPEKQTSAVAIASAMAVLLLPYSLVGPFAGALLDRWRRRQVFLYGNLLRALMASVTALLILGQVPDQLLFASALCVTAVNRFVLAGLSAALPRVVDSERLVVANSLSPTAGTLAATAGGGLAFLVRLAVSDSDAVVVLVGAALYLCAALASLRIAKELLGPDRALVRPGLATALTGTVHDLLAGLRHLTAPSRREAAWALAAMSLMRFCYGAVLVMLLMLCRYALTDTTEEGLALLGLALGVSGAGFFVAAVVTPWAAKRFGPGRWIMLCAAAAAVLEPAFGLPFTGGPLLIGAFVLGLTTQGAKIATDTIVQSTVDDAFRGRIFSLYDVLFNVAFVGAAAVAALMLPPDGRSVPLVVTIAVIYGAVAVAISRFERQ
>NZ_CP023697.1|WP_055605429.1|3988726_3989230_-|hypothetical-protein
MTTPPPQGNPFAQGQQQPQGQNPFAQGQPGLPQQAGQPGFPPQGAPVPPEQPRRKIGFKTIKNIVVVVVLVGAAIGAFISSRDDANTAAVGDCMHRGSTSDDNPDLEVVECNSSDAQYEVLAKIDGSFLSDTLASSKCEAEAKGFQYVYTQSGDGKDFLLCLKDHKK
>NZ_CP023697.1|WP_003949403.1|4001466_4001703_+|30S-ribosomal-protein-S18
MAKPPVRKPKKKVCAFCKDKVTYVDYKDTNMLRKFISDRGKIRARRVTGNCTQHQRDVATAVKNSREMALLPYTSTAR
>NZ_CP023697.1|WP_055605419.1|4001721_4002168_+|50S-ribosomal-protein-L9
MKIILTHEVSGLGAAGDVVDVKDGYARNYLVPRKLAIRWTKGGEKDVEQIRRARKIHEIQTIEQANQVKAQLEGVKVRLAVRSGNAGRLFGSVTPADIASAIKASGGPQVDKRRIELGSPIKTLGAHETFVRLHPEVAAKVDLEVVSE
>NZ_CP023697.1|WP_055605418.1|4002261_4003599_-|MATE-family-efflux-transporter
MTQAPARPRAVRRQHDREIVMLAVPAFGALVAEPLFVMADSAIVGHLGTAQLAGLGVASALLMTSVSVFVFLAYATTAAVARRVGAGDLPSAIRQGMDGIWLALLLGAGVVAVVLPTAPALVDLFGASDTASPYAITYLRISSLGIPAMLIVLAATGVLRGLQDTRTPLYVAVGGFAANGVLNVALVYGAGFGIAGSAWGTVIAQWGMAAVYLIVVLRGARKHGASLRPDFAGIRASAQAGAPLLVRTLSLRAILMITTAVAARLGDSDIAAHQIILSLWSLLAFALDAIAIAGQAIIGRYLGAGDAQGARRVCRRMVEWGFGVGVVLGLVVVLARPVFLPLFTSDSTVTDTALPALMIVALSQPISGIVFVLDGVLMGAGDGPYLAWAMLITLVVFTPFALLVPVFGGGLTALWGTMTLMMTVRLLTLWFRTRSGRWVVTGVTR
>NZ_CP023697.1|WP_055605417.1|4004056_4005541_+|replicative-DNA-helicase
MSISEPLDDPWADSGPSDRLPASRRREDGGRGRGRDEQHDRGRDSGGWDGTGSTFERVPPQDLEAEQSVLGGMLLSKDAIADVVEILKGNDFYKPAHETVYTAILDVYAKGEPADPITIAAELTKRGEINKVGGASYLHTLVQTVPTAANAAYYAEIVHERAVLRRLVEAGTRITQMGYAADDDVDEIVNRAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTGVPTGFTDFDSLTNGLHPGQMIVIAARPAMGKSTLALDFARAASIKHNLPSVVFSLEMGRNEIAMRLLSAEARVALHHMRSGTMTDEDWTRLARRMPDVSAAPLYIDDSPNLSMMEIRAKCRRLKQRNDLRLVVIDYLQLMQSGGSKRAESRQQEVSDMSRNLKLLAKELELPVIALSQLNRGPEQRTDKKPMVSDLRESGSIEQDADMVILLHREDAYEKESPRAGEADLIVAKHRNGPTATITVAFQGHYSRFVDMAQT
>NZ_CP023697.1|WP_055605416.1|4005997_4007383_+|serine-hydrolase
MTTHQEELLAGTRRALLHRIAVAQAEGRAPSLVATVVRGGEAVWTGARTSVEGQAPYEDVQYRIGSLTKTFTAVLVLQLRDEGAVDLGDPLEKHLPGTGVGEVTLVELLSHAGGLAAETPGPWWERTPGSLRPDLADVLGERPLVHPVGRRFHYSNPGYALLGALVERLRGATWEEVLRRDVLKPLGLRRTGVRPEAPYADGRAVHPWADVMLREPAEDLGRMAPAGQLWSTAGDLARFAAFLVNGDAHVLSAESLREMRRPAAPVEAADVASGYAYGLGLELRHRNGRALVGHTGSLPGFLACLAIGVEDDVAAVVLANCTSGPALFPVAADLVRIVAEAEPRIPASWRPLREFDSTVLELVGQWYWGTQGFALRLPADGLLSLEPLSGTGRRARFRSNGDGTWTGLEGYYAGELLRPVRRPDGSVSHLDLGSFVFSRQPYEDEASVPGGVDPEGWRGIG
>NZ_CP023697.1|WP_055605415.1|4007476_4007929_-|GNAT-family-N-acetyltransferase
MEDLEIRAAAASDVPAIVGMLADDTLGAQRESPDDLGPYLAALERLSADPNQRLVVAVHEDRVVGTLQLTIIPGLSRRGSTRSVIEGVRIHADERGSGLGTRLIEWAIDESRRQGCQLVQLTSDNTRTEAHQFYERLGFSASHVGFKLAL
>NZ_CP023697.1|WP_055605414.1|4007967_4008432_-|MarR-family-transcriptional-regulator
MTATDPALTALAQGWCALSLLHGRIEAHIERALQSRHDLSVREYSLLDVLSRQHDGEGGHLQMKQVADAVVLSQSATTRLVTRLEDRGLLERYLCPTDRRGIYTNVTQAGLALLEKARPTNDSALREALDTAAKNPDLAPLVRTVETLKTSVPA
>NZ_CP023697.1|WP_055605413.1|4008575_4009784_+|MFS-transporter
MPLALLALAIGAFGIGTTEFVIMGLLPEVADEFGVSVPTAGHLVTGYALGVMLGAPLMTVLGTKTSRKRMLMLLMGLFIAGNLLSALAPVFGLMLLGRVIASLAHGAFFGIGSVVAAGLVAPHKKAGAIALMFTGLTVANVIGVPLGTLVGQSAGWRITFGLVAGLGVIGLAGIAWLVPDLPAPEGVRLRHELVAFKNVQVLLAMAMTVLGFGGVFAAITYIAPMMTQVAGFADGSVTWLLVLFGLGMVGGNLVGGRYADRALMPLLYVSLGALAVVLALFTLTAHHKIPAAVTIILIGGLGFATVPPLQKRVLDQAHGAPTLASAVNIGAFNLGNALSAWLGGLVIAAGLGYTAPNWVGAVLAASALVLAFVSAALDRRDKALSAVDAGRAPTERQAVVPH
>NZ_CP023697.1|WP_055605412.1|4009930_4010356_+|heme-binding-protein
MTTTAVTPLTTAEAEALVAAAHRAAEAAGVTVSVTVLDAGGHLLAFRRDDRAVLISGETSTRKAYTALQLNTPTADLVDAVQPGGIFHTLPTALDRPLLFIAGGVPVQRGGRPIGAIGVGGGAPEQDHSFATAAVNALARG
>NZ_CP023697.1|WP_055605411.1|4010649_4011522_-|GNAT-family-N-acetyltransferase
MPTPPLAALPIRRLTFRDLPACADLSEDRGWPREEHKWGLLLSAGKGYGIDGPDGGLASACVVTEYGSQEQPSLGAIGMVLVAERHARQGVGRRLMRHVLSVMDSTPLTLYATPNGRPLYEELGFKATGRAEMLRGHFVPGPDGSVAGVSTRSATAEDLPALLRLDEEVFGADRTHIITRLPAFADQLRVAEEDGRIIGYAAAWPNMDTHVVGPLIARDTPTATALLASLAARTDRPLRTDIDVRHEELLAWVKDHGLESITFNTVMTCGITEPPGDWTRRFAPVTVAAG

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Crispr_ID: NZ_CP023697_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023697_7

4504408-4504508

Orphan

Consensus_repeat	Method
GGCTACACCGGTGCCATCGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023697_7

>merge|NZ_CP023697|7|4504408-4504508|CRISPRCasFinder
AGCTACACCGACTCGATCGACGGCGAACTCGGCCCCAACAGCTGGAAGGCCTTCCAGCGCCACCTCAAGGTGCACCACGGCTACACCGGTGCCATCGACGG

>NZ_CP023697|7|8|4504408-4504508|CRISPRCasFinder
AGCTACACCGACTCGATCGACGG	CGAACTCGGCCCCAACAGCTGGAAGGCCTTCCAGCGCCACCTCAAGGTGCACCAC
GGCTACACCGGTGCCATCGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023697.1\|WP_055606529.1\|4503028_4503907_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|366659
NZ_CP023697.1\|WP_150475401.1\|4501060_4502056_+\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NZ_CP023697.1\|WP_055609912.1\|4498680_4500162_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|132469
NZ_CP023697.1\|WP_150475402.1\|4502114_4503032_-\|DUF2690-domain-containing-protein	unknown	unknown	gnl\|CDD\|371292
NZ_CP023697.1\|WP_063885550.1\|4496058_4497396_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NZ_CP023697.1\|WP_055606535.1\|4511197_4512130_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236776
NZ_CP023697.1\|WP_055606538.1\|4515055_4516141_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274934
NZ_CP023697.1\|WP_055605239.1\|4491837_4492365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055606539.1\|4516137_4516824_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|274935
NZ_CP023697.1\|WP_079060741.1\|4495390_4495951_+\|lamin-tail-domain-containing-protein	unknown	unknown	gnl\|CDD\|376421
NZ_CP023697.1\|WP_055605242.1\|4492416_4494567_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226482
NZ_CP023697.1\|WP_055606534.1\|4510250_4511078_-\|DUF3558-family-protein	unknown	unknown	gnl\|CDD\|378803
NZ_CP023697.1\|WP_055606533.1\|4508496_4510014_-\|DUF2637-domain-containing-protein	unknown	unknown	gnl\|CDD\|378511
NZ_CP023697.1\|WP_055606536.1\|4512344_4513538_+\|RtcB-family-protein	unknown	unknown	gnl\|CDD\|376465
NZ_CP023697.1\|WP_150475691.1\|4497505_4498594_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176240
NZ_CP023697.1\|WP_150475400.1\|4500301_4500967_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|184958
NZ_CP023697.1\|WP_055606531.1\|4504748_4506509_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|215160
NZ_CP023697.1\|WP_055606537.1\|4513613_4514390_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NZ_CP023697.1\|WP_055573912.1\|4514623_4514959_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|235016
NZ_CP023697.1\|WP_055606532.1\|4506660_4508403_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234829

Protein	Function_ID	Function_description	E-value
NZ_CP023697.1\|WP_055606529.1\|4503028_4503907_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.58722e-16
NZ_CP023697.1\|WP_150475401.1\|4501060_4502056_+\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NZ_CP023697.1\|WP_055609912.1\|4498680_4500162_-\|amino-acid-permease	gnl\|CDD\|132469	TIGR03428, ureacarb_perm, permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.	9.47927e-61
NZ_CP023697.1\|WP_150475402.1\|4502114_4503032_-\|DUF2690-domain-containing-protein	gnl\|CDD\|371292	pfam10901, DUF2690, Protein of unknown function (DUF2690). This bacterial family of proteins has no known function.	2.94759e-11
NZ_CP023697.1\|WP_063885550.1\|4496058_4497396_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NZ_CP023697.1\|WP_055606535.1\|4511197_4512130_-\|hypothetical-protein	gnl\|CDD\|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	0.00202602
NZ_CP023697.1\|WP_055606538.1\|4515055_4516141_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274934	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family. This tightly conserved subfamily of the bacterial luciferase-like monooxygenase (LLM) family, with members showing > 60 % pairwise sequence identity, includes proteins from both species with and species without the ability to make coenzyme F420. Therefore, the like cofactor is FMN rather than F420. The presence of three members in Kineococcus radiotolerans SRS30216 and two in Saccharopolyspora erythraea NRRL 2338 suggest closely related (subfamily) rather than exactly conserved (equivalog) function. Gene neighborhoods around members are not conserved. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP023697.1\|WP_055606536.1\|4512344_4513538_+\|RtcB-family-protein	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	1.36135e-174
NZ_CP023697.1\|WP_055606539.1\|4516137_4516824_+\|oxidoreductase	gnl\|CDD\|274935	TIGR04037, predicted_flavoprotein, LLM-partnered FMN reductase, CE1759 family. This family represents a distinct clade within pfam03358. That family includes enzymes such as the NADH-dependent FMN reductase MsuE. Members of the present family regularly co-occur in genomes, typically as gene pairs, with members of TIGR04036, a probable FMN-dependent member of the bacterial luciferase-like monooxygenase (LLM) family. At least one member, RF\|YP_001509627.1 from Frankia sp. EAN1pec, is fused to the LLM protein. The function of these gene pairs is unknown.	2.59116e-81
NZ_CP023697.1\|WP_079060741.1\|4495390_4495951_+\|lamin-tail-domain-containing-protein	gnl\|CDD\|376421	pfam00932, LTD, Lamin Tail Domain. The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.	4.08618e-19
NZ_CP023697.1\|WP_055605242.1\|4492416_4494567_-\|AAA-family-ATPase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	2.4012e-48
NZ_CP023697.1\|WP_055606534.1\|4510250_4511078_-\|DUF3558-family-protein	gnl\|CDD\|378803	pfam12079, DUF3558, Protein of unknown function (DUF3558). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 177 to 195 amino acids in length.	9.18237e-05
NZ_CP023697.1\|WP_055606533.1\|4508496_4510014_-\|DUF2637-domain-containing-protein	gnl\|CDD\|378511	pfam10935, DUF2637, Protein of unknown function (DUF2637). This family of proteins has no known function.	3.80571e-45
NZ_CP023697.1\|WP_150475691.1\|4497505_4498594_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176240	cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	3.68297e-142
NZ_CP023697.1\|WP_150475400.1\|4500301_4500967_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|184958	PRK14996, PRK14996, TetR family transcriptional regulator; Provisional.	9.99635e-11
NZ_CP023697.1\|WP_055606531.1\|4504748_4506509_-\|arginine--tRNA-ligase	gnl\|CDD\|215160	PLN02286, PLN02286, arginine-tRNA ligase.	0
NZ_CP023697.1\|WP_055606537.1\|4513613_4514390_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.50931e-88
NZ_CP023697.1\|WP_055573912.1\|4514623_4514959_-\|YnfA-family-protein	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	1.35225e-45
NZ_CP023697.1\|WP_055606532.1\|4506660_4508403_+\|lysine--tRNA-ligase	gnl\|CDD\|234829	PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.	0

>NZ_CP023697.1|WP_055606529.1|4503028_4503907_-|helix-turn-helix-domain-containing-protein
MSRWKGLPAELDPSTRNLVVRLRRLKDHSGLSLRQLAARTGYSTSSWERYLGGRSLPPREAVESLASVTGEDPTRLLAVWEVAAEAWSGRTATAPAAPVAGALRAGAPAGEQDQGQAPEPAAETGRAGSIGLVDPVGPACAGAEPARGRAFHVAVAAGVVAVALTASAVVVLAGRVGTEDVRGTAAPPASSAAPATVSPPPDLPAYTCRVERIDGLWYAGQSTTRDAILANGYAGPEVAEAQCLLSRAGYSPGDIDGIVGPVTERAVKRLQAEADLVVDGIVGPHTWGALRG
>NZ_CP023697.1|WP_150475402.1|4502114_4503032_-|DUF2690-domain-containing-protein
MRSPERARLTATLRSLKEHAGLSLTGLGEHTSFSKSSWGRYLKGETLPPREAVRELCRLAGEPEGRCLALWELAESESSGRTARVPPPARPETAPEPQAEPAKEPAEGPAPGDPAPPRPTPPTAATTAHRRSWRVTVVMVAVLAVTAGGVTAAALLLPPDRTPDDSRGPATTGAGTGATTGPGTGPPSPRCQGGACEGRDPLNMLCGIGLDTLIERRTASGARLQVRYSATCGTSWGRIWNTRVGDRVELTAAGSTRSAEITDALDATAYIYTPMTRTAPGTLVRACFRPAGQTRREECFEATVR
>NZ_CP023697.1|WP_150475401.1|4501060_4502056_+|porphobilinogen-synthase
MTTYGSFPGTRPRRLRTTPAMRRMVAETRLHPADLILPAFVREGVGEPVPIEAMPGVVQHTRDTLKKAAAEAVAAGISGIMLFGVPEESKKDALGTPGTDPDGILQVALRDVRAEVGDDLLVMSDLCLDETTDHGHCGVLDAQGRVDNDATLERYAEMAQVQADAGAHVVGPSGMMDGQIGVIRDALDQIGREDVAILAYTAKYASAFYGPFREAVGSSLKGDRKTYQQDPANIRESMRELALDLEEGADMVMVKPAGPYLDILAKVADAVDVPVAAYQISGEYAMIEAAAEKGWIDRDRAVLEALTGIKRAGAQNILTYWATEFARKLDV
>NZ_CP023697.1|WP_150475400.1|4500301_4500967_+|TetR-family-transcriptional-regulator
MTSRGTGKRVRKAPAERRNEIVTTAARIGLTEGLECVTLRRVADELGVQSGLVGHYFPAADKLVAEAFTSATMAELDGLLPDPEETAGTGGAPGNTGPGAPIRTLRRFFALSSSADFDNISKLWLNARHLSRYRPVLRDHVVEQELLWCRRIERIVAAGVEAGDFRCGDPWATAVRVLVAIDGTSAYINTSAEHRAAPIAHMVRTLAESELGLAPGVLEPR
>NZ_CP023697.1|WP_055609912.1|4498680_4500162_-|amino-acid-permease
MNDSRTDAGELAEYGYQQELKRTLSPWAVFAIGFATISPVVGIYAVVQLGFVFAGPAWIWAVVVAALGQLLVATVYAELSSQFPMTGGVYQWVRRLGGPRLGWLTGWIYLASAIASLTTVAYLGASWLHMLFSDGALSPATHVLLGVVFIAVALGINLLGVNPVKHFLNAGIIAEGVASIAISVILLVFVRNNGFGILFESLGAEDASGGSVLAGFLTCLAVAGWAFLGFDATTQVAEETERPRRSVPRALLRAYLFVAFTVLLTGVAVTLSLRRPGDAVAGETADPVFAAVTEGLGDWSAKPFVLVVLIAFIACAISIQTYIGRAVFAFARDRQLPFSRTLATVGARQIPYVSLIVTAVLAALGLLLGLNGNAAATLISFGSGGFYFIFLTVAVVALTARLKGRWNPAAGQLRLGRTGLVINVLAVVWLLFEAVNIAWPRTELAPAGGSWVQVWAVVLVFSVLFAIGLVYVAVAKPHTELARNPAQEEVKVP
>NZ_CP023697.1|WP_150475691.1|4497505_4498594_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MSSAVVFDPGSGLGSREVALRPAGPGEVEIEVRAAGVCHSDLHIVTGDWPTDRPLVLGHEAAGVVTGVGAGVTSVRPGDHVVLSWFAPCRRCRKCVAGMAWLCTGTKAVENTLPDGGTPFTDARGEAVWPYLGLGAFTDRLVVPETAAVKVPEELPFGIGALLGCSITTGIGAVMNTARVRPGESAVVIGTGGVGLSVVMGLHLVGADPVVAVDLSPERLAVAKRFGATHTLDGAATDVAAWCQEELGGVDYAFEAIGSPAVIETLPAMLTSGGAAVLVGMAPSGATGSFDLFDLADQGKRILGCNYGSSIGEIDIPKLARLHLAGRLPLDDLIGATRPLSEARAAFEDLRSNTGVRTILEP
>NZ_CP023697.1|WP_063885550.1|4496058_4497396_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MYAVTDPTTGEVAELYPTASDAEVEAALTAATHAATTWGRGSTVAERAALLRRIGDLHQEHSEELAASIVREMGKPLAEAEGEVGFCADIYHYYADHAEEFLADEPLDVTSGPGSAVVRRSPLGVLLGIMPWNFPAYQVARFAAPNLATGNTIVLKHAPQCPATAALLERLFTKAGFPEGAYVNVYATNEQIAGVIADPRVQGVSLTGSERAGSAVAEIAGRHLKKVVLELGGSDPFLVLSTDDLDAVVDSAVAARLDNTGQACNAAKRFVVVQDLYDAFVEKFTARLLAGATGAPLSSAAAAENLGRQVDAAVAEGATLHTEGERHGAYFPAGVLTGLTTDHAAARQELFGPVAMVFPATDEDDAVRIANDTPYGLGSYLFTTDPAQAERVADRIEAGMVFVNGVGAEGAELPFGGVKRSGFGRELGRPGTEEFVNKKLIRTVA
>NZ_CP023697.1|WP_079060741.1|4495390_4495951_+|lamin-tail-domain-containing-protein
MSASSAARRLTAIALVAGSVVAAAALPASAVQDRGPDRQRVVISHVQYNAPGPDTRSNRSLNGEWVNITNRSSQSVNLRGWTLRNSEGDRYTFRHLRLDGRSTVKVHTGIGRDTRHDVYQDRREHIWDNRSDRATLTNRRGAVVDTESWGRGRGHDRDRGHDRGDNRGHDRDRGDNRGNDHGDRQR
>NZ_CP023697.1|WP_055605242.1|4492416_4494567_-|AAA-family-ATPase
MSPTSVFDLPERLSAKADPKLIAGDEAHFTAIAESLEQAIAELSDLRDATLRAPGGVGREAMDRDLEVHRLSARLRALRRFGLDLCLGHIVSADDPEPVYIGRLGLTDSTGRRLLLDWRSPAAEPFFAATHADPMGLASRRRYRWTGGRISDYWDEVFTADGLEGHAAALDDHSAFVASLGGDRSARMRDVLGTIQADQDAVIRASSRGALVVDGGPGTGKTVVALHRSAYLLYSDPRLGHRRGGVLFVGPHEPYLAYVADVLPSLGEEGVQTCTLRDLVPEGAAATAETDPEVARLKSSADMVRAIETAVRFYEDPPARGMTVTTPWASVPLTVEDWAEAFQAPEPGTPHNEAREQIWDELVTILGDKHGDDVPPNLLQRALRAHHGLVTALNNAWPLLEPTDIVSDLWSVPAYLRLCAPWLGPDEVERLRRGGEDAQSWTVSDLPLLDAARQRLGDPKAFLRKRRHDASVAAQRERMAGVIDNVIASDDDGEGAVTMLHGQDLRESLIDRSDLPTAEPDALAGPFAHVVVDEAQELTDAQWQMLLLRCPSRSFTIVGDRAQARHGFTESWQERLRRIGLDRITVASLNINYRTPQEVMTEAEPVIRAALPDANVPASIRTGGLPVVHGEVSDLDAVLDTWLAEHADGNGIACVIGDPAFQDTPRVRSLTPELSKGLEFDLVVLVDPDGFGKGIEGAVDRYVAMTRATRQLVVLT
>NZ_CP023697.1|WP_055605239.1|4491837_4492365_-|hypothetical-protein
MNETPGDDRRLPPALADLARTGFDYDDGNGIAFEPYDAFCSAEETTDRLRQWTGNPELDGDAYRLFGQDGSGGLAALWYGRPGRPLAEQPVVFMGSEGQCGVVAGNLSDFLWMLADGYGPLEAVLFGVDESRPDAALTALAERHATTPRRPAHTILTEAGAEFPTFAEDIEKLCL
>NZ_CP023697.1|WP_055606531.1|4504748_4506509_-|arginine--tRNA-ligase
MASVTSLSDSVQRHLASALSATRPEAAGADPLLRRSDRADYQANGILALAKKAKANPRDLAAEVVSHIVTGDELIKDVEVSGPGFLNITLADRAITANLAARHADGERLGVPLNENAGVTVVDYAQPNVAKEMHVGHLRSAVIGDALRAMLDFTGEKTIGRHHIGDWGTQFGMLIQYLFEHPGKLAPAGEVDGEQAMSNLNRVYKASRALFDSDEEFKERARKRVVALQSGDKETLELWQQFVDESKVYFYSVFEKLDMEIRDEEIVGESAYNEGMPETARLLEEMGVAVRSEGALVVFFDEIRGKDDQPVPLIVQKADGGFGYAASDLTAIRNRVVDLHATTLLYVVDVRQSLHFRMVFETARRAGWLNDDVTAHNMGYGTVLGADGKPFKTREGETVRLEDLLDEAVQRAAQVVREKARDLTEDEIRERAEQVGVGAVKYADLSTSPNRDYKFDLDQMVSLNGDTSVYLQYAYARVQSILRKAGAVRPAAHPELELHEAERALGLHLDAFGTTVFEAAAEYAPHKLAAYLYQLASLYTSFYDKCPVLKAESPEQVANRLFLCDITARTLHRGMALLGIRTPERL
>NZ_CP023697.1|WP_055606532.1|4506660_4508403_+|lysine--tRNA-ligase
MPIVAQSTETTDWVSRFADEVIEESERRAPGKPVVVASGLSPSGPIHLGNLREVMTPHLVADEIRRRGHRVRHLISWDDYDRYRKVPAGIEGVDETWAEHIGKPLTSVPAPKGSPYPSWAEHFKAAMVESLAELGVEFDGIGQTEQYTSGAYREQILHAMRHRGDIDAILDQYRTKKAPAKKQQQKAVDEAELEAAEGSGAAAEDDGSTGSAGYFPYKPYCGNCEKDLTTVTSYDDDSTELTYSCTACGFAETVRLSEFNRGKLVWKVDWPMRWAHEGVIFEPSGVDHSSPGSSFQVGGQIVGIFGGEQPIGPMYAFVGISGMAKMSSSRGGVPTPADALKIMEPQLLRWLYARRRPNQSFKVAFDQEIQRLYDEWDRLDAKVADGSALPADVAAHSRAVGTASGALPTTPRPLPYRTLASVADITGGHTDQALRILSDLDPSNPLGSLDEARPRYDKAEAWITLHVPADQRTIVRTEPDEELLKSLDEQGRRSLRLLLDGLADHWSLDGLTHHVYGVPKVQAGFPADATPKELPAEIKTAQRSFFALLYHLLVGRDTGPRLPTLLLAVGQERVRRLLGD
>NZ_CP023697.1|WP_055606533.1|4508496_4510014_-|DUF2637-domain-containing-protein
MAAPIQLTRTHRILIGVVVAGAVVIAGIGFAGSYAAVRELALQKGFGNFSYVFPIGIDAGICVLLALDLLLTWIRIPFPLLRQTAWLLTAATIAFNGAAAWPDPLGVGMHSVIPVLFVVSVEAARHAVGRIADITADKHMEGVRLTRWLLSPLPTFLLWRRMKLWELRSYEQVIKLEQERLVYQARMRSRFGRGWRRKAPVESLMPLRLAKYGVPLAETAPAGLAAAGIEPALIPPAPEHRTTVDGPATAAPALSLHKAAPPAEQRPELTGGPGDREDRGNHGAFGDQNDGGAHDEDHRDGGHREARDPRAFRDPRDTRDTPDAPFTPPYEQHGPERHGPDAPYGQQPPDPDQSLWLHARDPQSVEYHGGYDPTYDPADDPQYAEWAAEQERADQYRGQFEEAPPVREPSPEDTGTFPIPVGPGRTRELGEGGGTPEPSAPVPDDEGYYQVFKQSISGSGYPTPREFGDNVRATYGHSLPDAEAKRMVMEFQNRHFAELEEDHIA
>NZ_CP023697.1|WP_055606534.1|4510250_4511078_-|DUF3558-family-protein
MSEGTMQRRAQRDPSVKRLHRVLAGAAVVPAMLIVAGCSSDSGSDDGKDKAAGSSASASASASPSPTVRAAVYKDLPEACDVLSKKTLDDLVPKAKSGKESQSEDISTRAGCSWDSLANNGVDGSQFRWLSVSMLRFESDTTRGAGDELAKEYYDKQVGDVQAAEGAEDTKSEPVTETGDEATAVRYDLKKKEGTFKQQTVVARVENVVLTLDYNGAGLAGDKAPSADDLMKDAKKAAKEAVKAVTGSGGGKSSGGDAESGSPSKPASSSAPAKD
>NZ_CP023697.1|WP_055606535.1|4511197_4512130_-|hypothetical-protein
MQRRAYVPGVAALLAALVTGCTGSSGDGGPSDSSNPGSAGTASQAAQPGRYATLPEPCNAVGPGTLDELLPGIREMTDEARRTKAYAGEATLTYDTDRKVGCSWKVESAEATNRLVIDFERVVSYDNAVSDDNQAEELFAAKRTAADLPEPPATESGSAGPDDDTGEDGDGPSTGPDASSSPSARSSASPAPSGSSGSSGADSAAAAKASGSGSPSGDGSSPASPSVPPTGLQPRLLDEFGDEAFIDDELSSSGSTVKQRSVTVAFRTSNVIVTIEYAEQPATVGTVPDSGELQDRARKLASLLADSLSG
>NZ_CP023697.1|WP_055606536.1|4512344_4513538_+|RtcB-family-protein
MSYVEMPGAKVPIRMWADPASVEEGALQQLRNVATLPWVKGLAVMPDVHYGKGATVGSVIAMRGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSRIEQVIPVGRGMHDTPVDPSRLHGFTTGGWDDFWGRFDGVAEAVRFRQERAGKQMGTLGGGNHFVEVCTDTTGSVWLMLHSGSRNIGKELAEHHIGVARKLPHNQDLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKRNRSIMMALLKDVIRKEFRKAKPAFEAEISAHHNYVAEERYDGMDLLVTRKGAIRAGSGEFGIIPGSMGTGSYIVKGLGNADSFNSASHGAGRRMSRNAAKRRFSTKDLEEQTRGVECRKDSGVVDEIPGAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
>NZ_CP023697.1|WP_055606537.1|4513613_4514390_-|SDR-family-NAD(P)-dependent-oxidoreductase
MAAATPSAASRIAVVTGASGGIGAATARGLAEAGYRVVLTARRKDRIEALAEELNAAGHTATAYPLDVTDRAAVDEFATAFKTVGVLVNNAGGALGADPVATGDPEDWRRMYETNVIGTLHLTQALLPKLEASGDGTVVVVSSTAGHSTYEGGAGYVAAKHGAHVLAETLRLEIVGRPVRVVEIAPGMVKTDEFALTRFGGDEAKAAKVYEGVAEPLTAADVADTITWAVTRPSHVNIDLLVVRPRAQASNSKVHRER
>NZ_CP023697.1|WP_055573912.1|4514623_4514959_-|YnfA-family-protein
MLIARSAALFVLAAILEIGGAWLVWQGVRDNRGWMWAAGGVLALGAYGFVATFQPDAHFGRVLAAYGGIFVAGSLLWGAVADGYRPDRWDIAGALICLAGMAVIMWAPRNG
>NZ_CP023697.1|WP_055606538.1|4515055_4516141_+|LLM-class-flavin-dependent-oxidoreductase
MQFGIFSVGDVTPDPTTGRTPTERERIKAMVAIALKAEEVGLDVFATGEHHNPPFVPSSPTTMLGYIAARTEKLILSTSTTLITTNDPVKIAEDFAMLQHLADGRVDVMMGRGNTGPVYPWFGKDIREGINLAIENYALLHRLWREDVVDWEGRFRTPLQGFTSTPRPLDDVPPFVWHGSIRSPEIAEQAAYYGDGFFHNNIFWTADHTKRMIDLYRTRYAHYGHGTPEQAIVGLGGQVFMRKNSQDAVREFRPYFDVAPVYGHGPSLEEFTRQTPLTVGSPQQVIERTLSFRDYAGDYQRQLFLMDHAGLPLKTVLEQLDLLGEEVVPVLREEFAKNRPAGVPDAPTHSSLLAGREVTTA
>NZ_CP023697.1|WP_055606539.1|4516137_4516824_+|oxidoreductase
MSVVVVSAGLSVPSSTRLLGERLAAAATGQAPADVRVIELRDLAVDIAHNFTSGFPAPALAEAMDAVAGADGLIVVTPVFSASYSGLFKSFFDVLGVRDREALAGKPVLIAATGGTPRHSLVLDHALRPLFAHLRAVVVPTGVYAASQDWGDKGLDARIERAAGELAALTGALSAASDGADAVTGGGVDAVTGGGAIGVTRGGAAGDKFDARNVVPFEEQLAALRSTG

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Crispr_ID: NZ_CP023697_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023697_8

5336375-5336488

TypeV-U4

Consensus_repeat	Method
CGCCGGTCTGCTGGTTCCAGTCGCCGT	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NZ_CP023697_8

>merge|NZ_CP023697|8|5336375-5336488|CRISPRCasFinder
CGCCGGTCTGCTGGTTCCAGTCGCCGTCGCCGCCCTGCTGGTTCGAGGAGCCGCCGTCGCCGCCCTGTTGTTCGGTCGTGCCGCCGTCGCCGGTCTGCTGGTTCCAGTCGCCGT

>NZ_CP023697|8|9|5336375-5336488|CRISPRCasFinder
CGCCGGTCTGCTGGTTCCAGTCGCCGT	CGCCGCCCTGCTGGTTCGAGGAGCCGCCGTCGCCGCCCTGTTGTTCGGTCGTGCCGCCGT
CGCCGGTCTGCTGGTTCCAGTCGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023697.1\|WP_055609681.1\|5330198_5331143_-\|diiron-oxygenase	unknown	unknown	gnl\|CDD\|378680
NZ_CP023697.1\|WP_055609855.1\|5337409_5338624_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP023697.1\|WP_055609678.1\|5334010_5335423_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843
NZ_CP023697.1\|WP_055609688.1\|5328666_5328996_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055609854.1\|5339246_5340050_+\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
NZ_CP023697.1\|WP_055609852.1\|5341826_5343200_-\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|223492
NZ_CP023697.1\|WP_055609858.1\|5340324_5340840_+\|SigE-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132028
NZ_CP023697.1\|WP_141665913.1\|5340829_5341582_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055609851.1\|5345279_5347466_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_CP023697.1\|WP_055609682.1\|5329053_5329707_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP023697.1\|WP_055609680.1\|5331976_5332486_-\|DUF3291-domain-containing-protein	unknown	unknown	gnl\|CDD\|378694
NZ_CP023697.1\|WP_055609856.1\|5347614_5348058_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP023697.1\|WP_055609700.1\|5348477_5348771_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_079061230.1\|5343517_5345173_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
NZ_CP023697.1\|WP_055609684.1\|5325325_5325964_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|225138
NZ_CP023697.1\|WP_055609859.1\|5338639_5339146_-\|protein-phosphatase	unknown	unknown	gnl\|CDD\|225297
NZ_CP023697.1\|WP_055609689.1\|5327244_5328564_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP023697.1\|WP_055609687.1\|5331367_5331967_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP023697.1\|WP_055609679.1\|5332556_5334014_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223839
NZ_CP023697.1\|WP_055609683.1\|5326018_5327281_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380046

Protein	Function_ID	Function_description	E-value
NZ_CP023697.1\|WP_055609681.1\|5330198_5331143_-\|diiron-oxygenase	gnl\|CDD\|378680	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF. This family is a metalloenzyme which is involved in the biosynthesis of antibiotic aureothin by catalyzing the formation of p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a non-heme di-iron monooxygenase which creates nitroarenes via the sequential oxidation of aminoarenes.	2.09832e-103
NZ_CP023697.1\|WP_055609855.1\|5337409_5338624_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.18874e-67
NZ_CP023697.1\|WP_055609678.1\|5334010_5335423_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	9.32139e-74
NZ_CP023697.1\|WP_055609854.1\|5339246_5340050_+\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	0.00325447
NZ_CP023697.1\|WP_055609852.1\|5341826_5343200_-\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	1.54597e-114
NZ_CP023697.1\|WP_055609858.1\|5340324_5340840_+\|SigE-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132028	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.	5.39256e-46
NZ_CP023697.1\|WP_055609851.1\|5345279_5347466_-\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	2.54015e-77
NZ_CP023697.1\|WP_055609682.1\|5329053_5329707_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.04425e-12
NZ_CP023697.1\|WP_055609680.1\|5331976_5332486_-\|DUF3291-domain-containing-protein	gnl\|CDD\|378694	pfam11695, DUF3291, Domain of unknown function (DUF3291). This bacterial family of proteins has no known function.	5.69786e-78
NZ_CP023697.1\|WP_055609856.1\|5347614_5348058_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.87568e-12
NZ_CP023697.1\|WP_079061230.1\|5343517_5345173_-\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.25359e-145
NZ_CP023697.1\|WP_055609684.1\|5325325_5325964_+\|ATP-binding-protein	gnl\|CDD\|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	3.8199e-42
NZ_CP023697.1\|WP_055609859.1\|5338639_5339146_-\|protein-phosphatase	gnl\|CDD\|225297	COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal transduction mechanisms].	5.30932e-11
NZ_CP023697.1\|WP_055609689.1\|5327244_5328564_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	6.56282e-22
NZ_CP023697.1\|WP_055609687.1\|5331367_5331967_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	5.85194e-20
NZ_CP023697.1\|WP_055609679.1\|5332556_5334014_-\|penicillin-binding-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	4.38564e-77
NZ_CP023697.1\|WP_055609683.1\|5326018_5327281_+\|hypothetical-protein	gnl\|CDD\|380046	pfam17885, Smoa_sbd, Styrene monooxygenase A putative substrate binding domain. This domain is found in the 46 kDa FAD-specific styrene epoxidase (SMOA) protein, comprises a part of the styrene monooxygenase (SMO) two-component flavoprotein monooxygenase enzyme. Structural analysis indicates that SMOA monomer comprises two globular domains spanned by a long alpha-helix. This domain contains a putative substrate binding site.	1.38687e-59

>NZ_CP023697.1|WP_055609678.1|5334010_5335423_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MSKAGIFLATADPPTPTTSPPRRRGVEIALIVLAVLLSVYGYCAVGFARNNSVPPGAAGYGAGLGVLALVAHLAVRFRAPRADPLLLPIAVLLNGLGLVLIYRLDLETPGDEAAPTQLVWSTLGVALFIAVVLLLRDHRVLRRFTRTCAVSALVLLTVPIFFPAVNGARIWIRVAGLSIQPGEFAKVLLAVFFAAYLAENRGALTYAGRRFWRLQLPTGRVLGPIVAVWLVSVGVLVLERDLGTSLLFFGLFVVVLYVATGRTGWLAVGLLLASLGAVAVGRLEPHVHGRIETWLNPFASIEAGEGPNQLAQSLFAFAEGGLLGTGLGLGHSVLIGFAVKSDFILATAGEELGLVGLSAIFLLYGLLVERGYRAGLALRDPFGRLLAVGLAAIVALQVFVIAGGVTGLIPLTGMAMPFLAQGGSSVVTNWAIVALLVRLSDSAGRRGDGHPPPDGTDRGPDGGTGGGPDS
>NZ_CP023697.1|WP_055609679.1|5332556_5334014_-|penicillin-binding-protein
MTRYIRRAAVFCALLLFALLVNATRVQVLHADVYDDNPANRRDAIARYRQPRGDILVDGRPVTGSRDTGEHLRYERTYTDGPLYAPVTGFASQEYGTTLLEHTEDGLLAGTDPLLQPLPLWNDFTRSRNAGGDVVTTIHPAAQRAAYEGLRSRKGAVAAVEPSTGRILALVSVPSYDPEPLAGNGVTARRAWARLNGDPDQPMLNRAVRQTYPPGSTFKVVTAAAALDAGVITGLDEPTDSPDPYTLPGTTTRLTNTSRGCADASVREAFTWSCNTVFAKVGVATGLADLTATAEGFGFNEEGLRVPFPVARSTFDTTMDRAQLALSSIGQYNTRATPLQMAMVAAAVANNGYVRDPYLVERTTRAGGATVSAAGPGRARRAMYPSTALRMRELMRGVVEGGTGTNAAIRGAVVGGKTGTAQHGIGNSGTPYAWFVSWAQGDGDAEAKVAVAVVVEDTAAGRRGISGGGTAAPIARAVMEAVLKS
>NZ_CP023697.1|WP_055609680.1|5331976_5332486_-|DUF3291-domain-containing-protein
MTEATPAYELAEVNIARLKTPIDSPQLKDFVDNLDSVNADAEAADGFVWRLVSEGGNATDISVFDDPWLIVNMSVWRNTDALTAYMYQGRHREMLARRREWFEQVREAMVTLWWVPEGHRPTVAEAETRLLHLRAHGPTPYAFTLRTSFPQQGAGPVPGDVPDGLGCSV
>NZ_CP023697.1|WP_055609687.1|5331367_5331967_+|Uma2-family-endonuclease
MSAVRDSELDDDYEWPRPPQDGWTADDLDRLPNLPPHTELIDGSLVFVSPQTRFHSRVMSLLEPALRSQVPEEWDAIREMTIKLGKRNRPEPDVLVVRVDADTGPEQTWFRPDDVLLTIEVVSTDSIDRDREVKPRKYAAAGIAHHWRVEENDGLPVVYVYELDPATKAYVPMGIFHNRLKLTVPFPIDIDLTAVDRRR
>NZ_CP023697.1|WP_055609681.1|5330198_5331143_-|diiron-oxygenase
MTTQPLTDADALDGLRDALGLLKDRERVAERLLDASAKHSFDPDEELDWDAPFEEGLWFWPPELVSLYGTPLWKRMGEEQRLLLSQHEAAALASLGIWFELILMQLLVRHVYDKAATSAHVRYALTEIEDECRHSRMFARLITRGDTPWYPVSPLHQQIGRLFKTVSTTPGSFTATLLGEEVLDWMQRLTFPDERVQPLIRGVTRIHVVEEARHVRYAREELRRQMVTAPKWSQEFTRVSSGEFARVFSVAFINPEVYTNVGLDKREAVAQVRASAHRRDVMQQGAKRLTDFLDDIGVLRGVGRRLWRSSGLLA
>NZ_CP023697.1|WP_055609682.1|5329053_5329707_-|TetR/AcrR-family-transcriptional-regulator
MTPSAPTPAYRRLGVEERRRQLLDAALSLFAHRAPDEVSLDDVAEAAGVSRPLVYRYFPGGKQQLYEAALRSAADELRDCFDEPREGPLLPRLARALDRYLAFVEGHGTGFSALLQGGSVVETSRTSAIVDGVRRAAAEHILSHLGAVGPGPRLRMTVRMWITAVEAASLIWLDEDRRLPVEELRDWLVEQFLAALEVTARRDAETGAVVRALSGDG
>NZ_CP023697.1|WP_055609688.1|5328666_5328996_-|hypothetical-protein
MRSQDTPFEGGPMDGRVLPVLLGITGHPPKTYRIPVPAPGGGPPTVLVYRRVPRGRSGRIGLSPGWKYLYDPAGATAADRPRWPWSGRTRTPAADPDATPRGKPDDADG
>NZ_CP023697.1|WP_055609689.1|5327244_5328564_-|C40-family-peptidase
MSGMLLRLVCTTAVAVGTVLAPGPAAALPEPPGSTAAEPSGNGPATTATTPPDGRSVAELLTDLQRLYREAGKATEAYNAAEVRLAEQRAETRRLDRALAVARLSLHDSRGAAGRLARQQYQSSTGISPYVRLLLARDPQRALDQGHVIGRLARNRADTVGRLTGSERRAEALARRARKSLDDQLALAEQRGKQRDAVRERLDEVEKLLASLTPDQLAALAELERAEEAESQADFMASGALGTPGAPGTPATPATPGAPGAPGTPAASASPSAPGAGRTPSAAGDRALRYAVEQIGKPYEWGAEGPEAYDCSGLSSEAWRAAGIPVPRTSQEQWARLDRVPLDELRPGDLVVYFPDATHVAVYLGDGMVVQAPRPGARVKVSPIAANPVLGAVRPDPDREPLRRYVPPALPEGATEGPDRGYRGNGPDYAPTAPEASAR
>NZ_CP023697.1|WP_055609683.1|5326018_5327281_+|hypothetical-protein
MRKILVVGAGQSGLQLALGLQSHGYEVTLMSNRTADEIRTGRVMSTQCMFHTALQHERDLQLNFWESQAPKIQGLGVSVAAPGSYDPGPTQRAIDWLGRLDGFAQSVDQRVKMAGWMETFAQRGGQLVIHGAAVGDLDYFSRMYDLVLVSAGKGELVQMFGRDASRSPYAAPQRALAVAYVHGLAPRPEHPDTEAVRCNIVPGVGEMFIMPTLTTSGRADILFWEGIPGGPLDVFKDVKDPAEHLSLTLELMEKFLPWEYARATKVELTDAGGTLAGRYAPTVRNPVGTLPGGGLVLGVADVVVANDPITGQGSNSASKCAASYLASILEHGEAPFDEAWMRGAFDRYWDTARHVTKWTNAMLAPPPPHVLDVLGAAGGLQPVADRFVNCFDDPADLENFFYDPDKAGAYLAEASGAVGA
>NZ_CP023697.1|WP_055609684.1|5325325_5325964_+|ATP-binding-protein
MDSAVSEAVQGVTPLAEDDEPSLPWQTDRTRAPIATKIVVAGGFGVGKTTLVSTVSEIRPLETEALMTEASAETDDLTATPDKLTTTVAMDFGRITLDDDLVLYVFGTPGQQRFWFMWDDLVRGAIGAVVMADTRRLKDCWPALDYFESCGLPYVVAVNHFDETELFEPDDVREALTIPSRIPVMIMDARRRISVIETLLSLVGHALEETPE
>NZ_CP023697.1|WP_055609855.1|5337409_5338624_+|transposase
MQLRYSFRLYPNGPQRSALARAFGCARVVYNDALRTREDARAAGLPFVSSAVLSTAVTAAKSTPQRAWLAEVSAVVLQQSLRDLDTAYRNFFDGLKGKRPRMGAPRFKSRKDSRHTVRFTANARWKITPGGDLSLPKIGDVRVKWSRALPSAPSTVTVVEDASGRYFASFVVETDPEILPAMDNVVGIDLGLTHFAALSDGTKIDSPRFLRRAEKKLKRAQRDLSRKAKGSANRVKARIKVARAHARTADARREFHHRLSTKIIRENQSVAVEDLAVKGLARTRMAKSVHDAGWSAFVTMLEYKAAKFGRTFHRIARFEPTSQVCSVCGVKDGPKPLGIRVWTCTACGAVLDRDINAAVNVAKAAGLAVTACRARVRPGRVPAQRGEAGTHRDGQMAVVGIPSL
>NZ_CP023697.1|WP_055609859.1|5338639_5339146_-|protein-phosphatase
MHTRRKQPDVPAPDTPWDEIVPGLWMGGHEFRGRSGQLEFAAVRQEFDLVQTLLRLPGHGPAPGVEHHVWPIPDGPLDGTQLLGVIRLAEAACEALDDGRTVLVRCFHGYNRSGLVVAHALMHRGGSVEEVIRLIRARRSGWALHNDLFVDYLRAGLRTARLLEELTD
>NZ_CP023697.1|WP_055609854.1|5339246_5340050_+|NERD-domain-containing-protein
MKGLRVVPTWRHGRERLYVCLPDGGNVAWYDRDAARVSLLGEDREAEVLAALGPFLTGPVTVGPPPVPTPAELARLALHPDDDLAPNRPGEALLIALDRDPGPAHRLRPDPRHRALEAERTVGEALDRMDGLGVRVLHSIPLPGGDRVHHLAIGPGGLYAVHTVYARRQRVTVADPLVALGRREPLPVLRRVRADAERISYALTAEVRPVLVLAGASHVTVRTPPREVRVLTDGEVERLGDLGGVLKPADVEALYATARDRNTWTRL
>NZ_CP023697.1|WP_055609858.1|5340324_5340840_+|SigE-family-RNA-polymerase-sigma-factor
MTEDEFDAFYAAAFPRLTGQLFAFTGDRGEAQDVVQEAFVRAWDRRHKLRADGAPEAWVRTVAMRLAVSRWRRARRWLELVRHSALPETIPGPGPERTALVAALRELPEHQRMAIVLHHLCDLSVEQVASETGAPVGTVKVRLSRGRAALAKQLAVDEAEEPAWREGGRVG
>NZ_CP023697.1|WP_141665913.1|5340829_5341582_+|hypothetical-protein
MSDELATVLRELAEANQVPPPLPAAEVRTRARRRSRRRRTTVRLGLATSAAGMLATIGLTVHAEEPGRDPRASAESATIGTPTSSPRAPVAASDRPAGTEEAVLDLGRHTLTFDGRVMRVDPHSFGALLSPGRELTVRAKHEVMLLRNDERTGNRHEAEVPYVVELRTGDRPPVYAGALAFDIRSLGALGARAGWLVLSVDDARWFYTRIRQGEHVEITSPASPVAPAPTPDPADGPDPETGTATSRPPN
>NZ_CP023697.1|WP_055609852.1|5341826_5343200_-|deoxyribodipyrimidine-photo-lyase
MTVAVVLFTSDLRLHDHPPLRAALAAADEVVPLFVRDSGVHAAGFDAPNRAAFLADCLWDLDASLRRRGGRLVVRTGPVVRETGAVATECGAAEVHMAAGVSGYARRREERLREDLGRRGVALRVHDAVNTAVAAGAVTPAGSDHYAVFTPYFRRWSQEKLRGVWPAPRTVRVPDAVRGEPLPSREDLPVLSPGLPAGGETRGRERFARWARSRMPGYEEGHDDLAGDATSRLSPYLHFGALSPVELVQRSRSRGGAGAEAFVRQLCWRDFHHQVLAARPEASRRDYRPRHDRWRTEEEAAEDVAAWREGRTGYPIVDAALRQLLHEGWMHNRARLLAASFLAKTLYVDWRVGARHFLDLLVDGDLVNNQLNWQWIAGTGTDSRPNRVLNPVRQGLRYDPSGAYVRRWVPELEGVEGRNVHTPWRLPEERRAALDYPAPLLDLTEGLVRFQHARGLG
>NZ_CP023697.1|WP_079061230.1|5343517_5345173_-|SDR-family-oxidoreductase
MNTDAGTDTGPDTGPDGQRDEGGAEGLHCLVTGASGYIGGRLVPELLRAGHRVRCLARTPGKLRDHPWAGDVETVRGDVTDPGSVAGALRGIDVAYYLVHALGTGTGFEETDRQAARTFAQEARAAGVRRIVYLGGLTPRGVPEQSLSPHLRSRAEVGRIFLDGPVPATVLRAAVVIGSGSASFEMLRYLTERLPAMVTPSWVHTRIQPVAVRDVLRYLVGSAGMPAEVDRAFDIGGPDVLTYLEMMRRYAVVAGLRRRLVVPVPVLTPGLSSHWIGLVTPVPASLARPLTESLRHEVVCHEHDIARYVPDVPGSPLPFDEALALALRRVREAQVATRWSSASVPGAPSDPLPTDPDWAGGSLYQDERRMPVEASVESLWKVIEGIGGDNGWYSFPLAWAVRGWLDRFVGGVGLRRGRRDAERLRVGDSLDFWRVEEIEPGRLLRLRAEMRLPGLAWLEMYADTDDEGRTHYRQRALFHPRGLPGHAYWWSVAPFHAVVFGGMARNITQAAAKGMSAHGTGARTGRRGSREPARHARRARPLLRARRTRRG
>NZ_CP023697.1|WP_055609851.1|5345279_5347466_-|MMPL-family-transporter
MRTTPRWGRWLVPLVLLIVWLGVGGMLGPYAGKLGEVSTNDQAAFLPQSAESTKVLEAGEAFEEAGAARTVPAIVVWTVDGGGDATVTEAQQKAATGAIAGLAGRPGVVSAPSPAMISDDKQALQAVVPLKPDLEDGLPEVLEEIREAAKSVPGTTAQIAGPAASQADLSDAFAGIDGLLLGVALAAVLVILLLVYRSVLLPFLIILGSVFALALACAVVYALADRDIVRVDGQVQGILSILVIGAATDYALLLTARFREEIAVHGDRVAAAATAVRRSFGAITASAATVALGLLALLASDLTNNRALGPVGAIGIVCSVLSTLTFLPAVLALLGRSAFWPSRPKKADSAPSADGSGEKPGVWQRVAATVDRRPRATWVVTALVLAVFAAFSPTLSSKGVPLDEIFVGEASSVTAQETLGEHFPGGSGNPAVIVADADRAAQVTAAAEKTDGVASAAAISASGRPGGEPLVADGRVQISATLEDGSDSDAAKETVVRLRENVHAVSGADALVGGYTAQQYDTQETAARDRTVIVPIVLAIILLILVLLLRSLLVPVLLVATVGLNFLATLGISALVFEHLLGFSGTDASVPLYGFVFLVALGVDYNIFLMSRVREEALAHGSRQGVLRGLTTTGGVITSAGVVLAATFAALMVIPLAFLVQIAFIVAFGVLLDTLVVRSLLVPALVIDIGPRAWWPSVLARKGDTGADAGTGAGTGAASGAESGSRSG
>NZ_CP023697.1|WP_055609856.1|5347614_5348058_+|MarR-family-transcriptional-regulator
MQAFAVLLRRMNTEFNRITHEFAQEQGLHLTDVQALMAILDADADEGPMTPGRLRDRLDLTSGAVTACIDRLEKAGHIRRVRALDDRRVVHLHYEEAARSVAADFFRPLARGTEAARSRFTREELTAVTRFLTEMNRELALLGRHTS
>NZ_CP023697.1|WP_055609700.1|5348477_5348771_-|hypothetical-protein
MTTTGRDLLPTEVEDPSFTTSCGRRIAVRCLRLAPADRPISRVALDVGRERGGVPGAWAALTADEARALARLLLLHAGLAEGGDASGEPSREGVASF

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Crispr_ID: NZ_CP023697_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023697_9

5471873-5471992

Orphan

Consensus_repeat	Method
CGCGCGGACCGGCGGCCGCAGGGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP023697_9

>merge|NZ_CP023697|9|5471873-5471992|CRISPRCasFinder
ACCACGAACCGGCGCCCGTACGGGCCGACCACCGCGCGGACCGGCGGCCGCAGGGGCAGCCGGTGGCACGGGCCGGACGGTGCACCGGACGAGTGCGCGCGGACCGGTGGCCGCAGGGGC

>NZ_CP023697|9|10|5471873-5471992|CRISPRCasFinder
ACCACGAACCGGCGCCCGTACGGGC	CGACCACCGCGCGGACCGGCGGC
CGCAGGGGCAGCCGGTGGCACGGGC	CGGACGGTGCACCGGACGAGTG
CGCGCGGACCGGTGGCCGCAGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023697.1\|WP_055606775.1\|5476998_5477958_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP023697.1\|WP_055606771.1\|5471191_5471872_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379324
NZ_CP023697.1\|WP_055606777.1\|5473037_5473787_+\|enhanced-serine-sensitivity-protein-SseB	unknown	unknown	gnl\|CDD\|379654
NZ_CP023697.1\|WP_055606763.1\|5463985_5464489_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP023697.1\|WP_055609273.1\|5481101_5481962_+\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|379298
NZ_CP023697.1\|WP_055572275.1\|5462941_5463709_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180270
NZ_CP023697.1\|WP_055606772.1\|5472064_5472871_+\|enhanced-serine-sensitivity-protein-SseB	unknown	unknown	gnl\|CDD\|379654
NZ_CP023697.1\|WP_055606766.1\|5465698_5466073_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350220
NZ_CP023697.1\|WP_055606764.1\|5464773_5465181_-\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|239905
NZ_CP023697.1\|WP_055606769.1\|5468970_5469348_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP023697.1\|WP_055606767.1\|5466171_5467539_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP023697.1\|WP_150475477.1\|5478962_5480216_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|185037
NZ_CP023697.1\|WP_055609272.1\|5480360_5481020_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP023697.1\|WP_079061153.1\|5481992_5482778_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236881
NZ_CP023697.1\|WP_055606774.1\|5475992_5476997_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP023697.1\|WP_055606765.1\|5465456_5465699_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|226603
NZ_CP023697.1\|WP_055606768.1\|5467695_5468955_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_CP023697.1\|WP_055606770.1\|5469565_5470699_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP023697.1\|WP_055606773.1\|5474216_5475887_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP023697.1\|WP_150475476.1\|5477964_5478966_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223521

Protein	Function_ID	Function_description	E-value
NZ_CP023697.1\|WP_055606775.1\|5476998_5477958_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.65098e-83
NZ_CP023697.1\|WP_055606771.1\|5471191_5471872_+\|AAA-family-ATPase	gnl\|CDD\|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	5.63059e-09
NZ_CP023697.1\|WP_055606777.1\|5473037_5473787_+\|enhanced-serine-sensitivity-protein-SseB	gnl\|CDD\|379654	pfam14581, SseB_C, SseB protein C-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This presumed domain is found at the C-terminus of SseB proteins.	6.85881e-24
NZ_CP023697.1\|WP_055606763.1\|5463985_5464489_+\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	8.19877e-20
NZ_CP023697.1\|WP_055609273.1\|5481101_5481962_+\|thioesterase-family-protein	gnl\|CDD\|379298	pfam13622, 4HBT_3, Thioesterase-like superfamily. This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.	1.5162e-46
NZ_CP023697.1\|WP_055572275.1\|5462941_5463709_+\|enoyl-CoA-hydratase	gnl\|CDD\|180270	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase.	1.35079e-75
NZ_CP023697.1\|WP_055606772.1\|5472064_5472871_+\|enhanced-serine-sensitivity-protein-SseB	gnl\|CDD\|379654	pfam14581, SseB_C, SseB protein C-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This presumed domain is found at the C-terminus of SseB proteins.	1.36247e-30
NZ_CP023697.1\|WP_055606766.1\|5465698_5466073_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350220	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Synechocystis sp. (strain PCC 6803) Sll0205 protein and other uncharacterized homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	6.09125e-54
NZ_CP023697.1\|WP_055606764.1\|5464773_5465181_-\|cold-shock-domain-containing-protein	gnl\|CDD\|239905	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.	8.98999e-20
NZ_CP023697.1\|WP_055606769.1\|5468970_5469348_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.92454e-61
NZ_CP023697.1\|WP_055606767.1\|5466171_5467539_-\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP023697.1\|WP_150475477.1\|5478962_5480216_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|185037	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional.	2.01704e-147
NZ_CP023697.1\|WP_055609272.1\|5480360_5481020_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	2.34178e-54
NZ_CP023697.1\|WP_079061153.1\|5481992_5482778_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	3.82107e-26
NZ_CP023697.1\|WP_055606774.1\|5475992_5476997_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.03681e-117
NZ_CP023697.1\|WP_055606765.1\|5465456_5465699_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	1.59781e-14
NZ_CP023697.1\|WP_055606768.1\|5467695_5468955_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP023697.1\|WP_055606770.1\|5469565_5470699_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP023697.1\|WP_055606773.1\|5474216_5475887_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	6.46177e-166
NZ_CP023697.1\|WP_150475476.1\|5477964_5478966_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.23013e-157

>NZ_CP023697.1|WP_055606771.1|5471191_5471872_+|AAA-family-ATPase
MNKATAYATTTGVAPPEQQAPSAREACGTPPAPAVRDLRERAGHSPDVLLFGPRDLVVVTGLPGSGKSTLMRRTVRGTRIDSQDTRDRWDRGTPRLLPYAVYRPLVRLAHYAGLRRALRTGEGVVVHDCGTQAWVRHWLAREARRRGADLHLLLLDVPAEQALDGQRERGRGVSRYAFRRHRTAVDRLLASVTRGDLPAGCGSAVLADRDAANALHRIDFTDRAAD
>NZ_CP023697.1|WP_055606770.1|5469565_5470699_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MSSTELRRTALDALHRSLGATMTDFAGWDMPLRYGSERDEHNAVRTKAGLFDLSHMGEITVTGPQASRFLDHALVGNIGTVKTGRARYTMICREDGGILDDLIVYRLDDTEDGSPRYLVVANASNAQVVLDALVERSAGFDAEVRDDRDAYALLAVQGPESSGILQSLTDTDLEGLKYYAGQPGTVAGVPALVARTGYTGEDGFELFVKPEHAVELWQALTKAGEGAGLVPCGLSCRDTLRLEAGMPLYGNELSASLTPFDAGFGRVVKFEKEGDFVGRAALAEAAARAERTPPRTLVGLVAEGRRVPRAGYAVVAGGEVIGEVTSGAPSPTLGRPIAMAYVDGAYAEPGTAGVGVDIRGSHEPYEVVALPFYKRQK
>NZ_CP023697.1|WP_055606769.1|5468970_5469348_-|glycine-cleavage-system-protein-GcvH
MSNPQQLRYSKEHEWLSAAEDGVSVIGITEHAANALGDVVFVQLPEVGDTVTAGETCGELESTKSVSDLYCPVTGEVTEVNEDVVSDPSLVNSAPFEGGWLFKVRVTDEPADLLSAAEYDAFIQG
>NZ_CP023697.1|WP_055606768.1|5467695_5468955_-|serine-hydroxymethyltransferase
MSHLNTPLHELDPDVAAAIDAELHRQQSTLEMIASENFAPVAVMEAQGTVLTNKYAEGYPGRRYYGGCEHVDVIEQIAIDRVKELFGAEHANVQPHSGAQANAAAMFALLKPGDTIMGLNLAHGGHLTHGMKINFSGKLYDVVAYHVGDDGRVDMAEVERLAKESRPKLIVAGWSAYPRQLDFAEFRRIADEVGAYLMVDMAHFAGLVAAGLHPNPVPHAHVVTTTTHKTLGGPRGGVILSTAELAKKINSAVFPGQQGGPLEHVVAAKAVAFKVAASEEFKDRQRRTLEGARILAERLTRDDARAVGVDVLSGGTDVHLVLVDLRASELDGQQAEDRLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGAEDFAEVADVIAEALKPSYDTEALRARVTALAEKHPLYPGLK
>NZ_CP023697.1|WP_055606767.1|5466171_5467539_-|L-serine-ammonia-lyase
MALSVFDLFSIGIGPSSSHTVGPMRAARMFARRLHHEELLETVASVRAELYGSLGATGHGHGTPKAVLLGLEGASPRTVDVETADAQVERIKDSGRLSLLGTHEVAFSFDDDLVLHRRKALPYHANGMTLWAYDASGAEVLVKTYYSVGGGFVVDEDAVGADRIRLDDTVLKYPFRTGDELLRLTRETGLSISALMLENECAWRTEEEVREGLLEIWRVMQACVARGMSREGILPGGLKVRRRAANTARKLRAEGDAPALAMEWITLYAMAVNEENAGGGRVVTAPTNGAAGIIPAVLHYYMNFVPGADEDGVVRFLLAAGAIGMLFKENASISGAEVGCQGEVGSACSMAAGALAEVMGGSPEQVENAAEIGMEHNLGLTCDPVGGLVQIPCIERNGMAAVKAVTAARMALRGDGSHKVSLDKVIKAMKETGADMSVKYKETARGGLAVNIIEC
>NZ_CP023697.1|WP_055606766.1|5465698_5466073_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MRLLLDTHVVLWWLDDSAELSGEVKDLLDTEPAVYVSAVSPWEIAIKQSLGKLAGPEDLAERVRDSQFTGLPITAGHGVRAGMLPAHHRDPFDRILVAQAQIEGMTLLTRDKWIPQYDVRVMPV
>NZ_CP023697.1|WP_055606765.1|5465456_5465699_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MEAARQYNVHEAKTHFSRILEQVATGEEIVISKAGEPVAKVVPLRPKVKRTGRGSLRGRIHIPDDFDELPDDIADAFGMR
>NZ_CP023697.1|WP_055606764.1|5464773_5465181_-|cold-shock-domain-containing-protein
MVAGRVVRFDAVRGYGFIAPEHGGEDVFLHVNDVRIPEHQLRPGVTVEFEIEEGDRGLKASGVRLAQGAGPVPSAGAGRQPDGEDPLCDVLTAEEYLQEVTEVLLSAAPKLTGEQILQARRGLLQFGKTHGWCDG
>NZ_CP023697.1|WP_055606763.1|5463985_5464489_+|ATP-binding-protein
MAGLDGREQPRGDGRATVSRWSPTVEDEHAQKALELFGDPSQAEVPLPSRPESAAVARRLTQVVVLRHWGLGAAHTEDAVLLVSELVGNAVRHTGARVFGLRLRRRPRWIRVEVRDPSRGLPCLMPVQELDISGRGLFLVDTLADRWGVDLLPRGKTTWFDLRVTDR
>NZ_CP023697.1|WP_055572275.1|5462941_5463709_+|enoyl-CoA-hydratase
MTVHLEVAEGVGTLRLDRPPMNALDVATQDRLKELAEEITRREDVRAVVIFGGEKVFAAGADIKEMQAMDHTAMVLRARALQDSFTAVARIPKPVVAAVTGYALGGGCELALCADFRIAGENAKLGQPEILLGLIPGAGGTQRLARLIGPSRAKDLIFTGRQVKADEALALGLVDRVVPAAEVYEQAHAWAAKLAKGPAIALRAAKEAVDTGLETDIDTGLAVERNWFAGLFATEDRERGMRSFVEDGPGKAKFL
>NZ_CP023697.1|WP_055606772.1|5472064_5472871_+|enhanced-serine-sensitivity-protein-SseB
MDFPAGFSADFPAQAHLHPHGGWPGNELEEVLSAALGVPSGDGRIIEVLGRSHVWIPLPEGGGPDSGSLDLPTMEIEGQAYVPVFSSEEQFRQVVGSHMSFTVAPAVEFARGLPPQAGIAVNPGGVVGVPLPPPAVAALCRAGRGPLDGPASGGRVKLFEPDWQDDPVAFLAAAATEFEALGVVATARRCLAEIETAPPVLFVGVELSPAELTRTEGDLRAAPIDALGRALGREPVKWPVNLVLLDMAQDPVGQWMRDRVRPFYQWTR
>NZ_CP023697.1|WP_055606777.1|5473037_5473787_+|enhanced-serine-sensitivity-protein-SseB
MLRQVAPGRYDAYEALLRALATPSAGHVWMLLWQGQAGSPDAQYGNMEVDGFGYAPCVTSAQELSASGWNRSYEVVDGIEAARALYPDRYGLWLNPHAPGGGLGIPWLDLRRLATGLDRQPAGPLRLSEPAIEIPQFYALLAQNAHRTPAVRSLRRTWVQPSLGAPYLAIGLDVYDTSPPAVDAVRAMMRQSLGAVPDGLPVSTVAMSDEHDPVAMWLRANARPFYDREAHGAAAPPAAGSGHPPAHQR
>NZ_CP023697.1|WP_055606773.1|5474216_5475887_+|ABC-transporter-substrate-binding-protein
MRIPKSRAARAITAAVAVTLIATGCSSERDSDNKSDGEKDTFVFAGAGDPGSLDPALASDGETFRVTRQAFEALLEHESGGSELVGGLAEKWSSNDKGTVWTFDLRKGVKFHDGEAFNAAAVCANYDHWFNWTGTYQSSAVSYYWQTIMGGFAKNEDKETPEANYKSCTAKDENTAVIEVKKPSANLPGGFSLNALAIHSPKAIEAYKKQDASAKGDAITYPEYSQKAGTVAGTGPYKITKWNKGNKEVSLERFDDYWGDKAKVKNLVFRTIDTEEGRRQALQAGDIDGYDLVAPADVKTLEDQGYVVPTRGVFNLFYVGMSQQANPALKKKEVRQAIAHSIDRENLVKTQLPEGGKVADQFMPDTVEGYSKDVKQYPYDTAEAKKLLKKAGQEKLKVDFCYPTEVTRPYMPAPQDLFELMKDDLEKSGITVTPKAMKWAPDYLDATESGSCDLHMLGWTGDFNDGFNFIGTWFAGYDKQWGFKDKKVFDAVNAGSKLGNHDERVAAYTKANEVIMDYLPGVPVSSSPPAIAFAKNVNPPNVSPLTQEVFSEASFK
>NZ_CP023697.1|WP_055606774.1|5475992_5476997_+|ABC-transporter-permease
MLRLVVRRLLQLIPTLLGLSVLLFLWLDRLPGGPASAILGEKATEAEVIRINRALGLDQPVYVQYWRFLKRIAELDLGTSTQTGQPVWDEFVLRFPATVELALLGILIAVAVGIPLGYLAARHRGGWLDVTAVSGSLVGICIPVFFLALILKQIFAVELGIFPSYGRQDTGIDATSVTGFAVLDGVLTGEIDAAWDALMHLVLPSVALASIPLAVIVRMTRASVLEVQDEDYVRTAEAKGLRRSVVRGRHVLRNAMLPVVTAVGLLTGSLLSGAVLTESVFSFGGIGSFLRTAIDGRDYPVLVGFIMFIALVYVLINLLVDVAYSLIDPRVRVY
>NZ_CP023697.1|WP_055606775.1|5476998_5477958_+|ABC-transporter-permease
MSVATKSEKIQRLAELTATKETGTGASLWREAFRRLKRSKMAIIGAIIISLFVVLAIVGPYIAPHAATAQAWRGEVFPNRGEFVGPRGENWFGLDHLGRDMFSRMLIGARQTLLVGIIATMIGLVTGFLIGGISGAAATLGGDAGKRIDSVIMRFIDMLLAMPSLLLAVSIAAIMGQSLTTVMIAVGVVQIPVFARLLRGSMLAQGGADYVLAAKSLGVRKRRIVISQIIPNSLSPVIVQATLSLATAIIEAAALSYLGLGNPDPAIPEWGVMLTQAQRFFDNAPLMALYPAVGIIITALGFTLFGEAMREALDPKLRG
>NZ_CP023697.1|WP_150475476.1|5477964_5478966_+|ATP-binding-cassette-domain-containing-protein
MSLLTVDELTVTFGGRGRKESRAVDGVSFEVDQGQVVGLVGESGCGKSVTSLALMGLLPDKGVTVGGRAEFDGTDLFTMNPSARRDLRGSKMAMIFQDPLSSLNPVVPIGVQVTEILERHRGMKGEAARKEAAHLLDRVGIPDPTRRLKEYPHQLSGGMRQRALIAMAVACAPSLLIADEPTTALDVTIQAQILELLKELVDREGTALLMITHDLGVVAGMCDQVNVLYAGKAVESAGRRELFAHPTHPYTHGLLGSIPRLDAPRGESLKPIRGSINDRVAWADGCAFAPRCDRYEMGCLTGTPQLAEPRAADHQVRCVNPVLDDAKAEEVPA
>NZ_CP023697.1|WP_150475477.1|5478962_5480216_+|ATP-binding-cassette-domain-containing-protein
MSLLELDGVKVHFPIKKGVLFDRTVGHVYAVDGVSLKVEAGETYGLVGESGCGKTTLGRSVLRLVDITEGSVVLDGTDLAKLPNEEMRRFRRRLQMVFQDPLGSLNPRQNIESILSEGMVAHGIGKNQEERREKIKAILERVGLPSNALARYPHEFSGGQRQRIGIARALVLEPDVIICDEPVSALDVSIQAQVVNLLEELQEELGLTYLVIAHDLAVVRHISDVIGVMYLGSLVEEAPSDTLYAEPKHPYTKALMSAVPVPDPEVEDRRERILLTGDLPSPANPPTGCRFHTRCPWAQAEKCATERPELKDVGGGHRVACHYTAEIASGELAPTRPTGIEAVTETEDALVKPTEGEAEVPAALLPADSTTKPDAPAVKEKVPAAAETPGDPAADAVAKDADAATPEASGKGPAGTD
>NZ_CP023697.1|WP_055609272.1|5480360_5481020_+|trimeric-intracellular-cation-channel-family-protein
MLQQLFSPSLLHALDLVGIFVFAISGALLAVRKNLDVFGIAVLAEATALGGGLFRDVVIGAVPPAAFTDLGYFVTPLLAVALVFFLHPHVERIQNAVNFFDAAGLGLFCVVGTAKAYDYGLSATASACLGLVTAVGGGVVRDVLANEVPSLLRWDRDLYAVPAMVGATMVALCIHFDALNAFTSSLAVVTAFVLRLLALRYHWRAPRAWQRRSTVREEE
>NZ_CP023697.1|WP_055609273.1|5481101_5481962_+|thioesterase-family-protein
MPEAASAPAVRATIGDSEFDRDTAVTPREPGVYDIDLSAGWTIISAVNGGYLLAVLGRALADALPHADPFTLSAHYLTASQPGPAVVRTQTVRTGRTLSTGQASLFQTDEQGREVERIRLLASYGDLDALPDDVRTSAEPPAIPPMDQCFGPEDGPTPVDGSSAITDRLMLKLDPSTLGWALGKPSGKGEMRAWFGLADGRDHDPLSLLLAVDALPPTAFELGLKGWVPTVELTVHVRSRPAPGPLRVSITTRNLAGGFLEEDAEVWDSADRLVAQSRQLARVRLG
>NZ_CP023697.1|WP_079061153.1|5481992_5482778_-|TetR-family-transcriptional-regulator
MSHTLGTRQAQKQRTRRALLDAALELLEEQSLGSLGLREVTRAAGIAPTAFYRHFRSVEDLGVALVGEALEGLHPLIGTAVSTTGDAEERIARAVELVAAHVDRYPAHMRFVVRERHGGVRAVREAIRDQLARFTEEVARTLAEDPVSAGWSADDLLMLAQLYVEQMIATGCLFLESLESLEATESLEATAPTPSPVPATGPGERARTRERVASTAARRLRLISIGRLHWPDRRAGEGTPDEGAPGRGTPCTGATGTGTAD

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Crispr_ID: NZ_CP023697_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023697_10

6593331-6593447

Orphan

Consensus_repeat	Method
ACCCGCCTCCCGTAGGCGCGCCCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP023697_10

>merge|NZ_CP023697|10|6593331-6593447|CRISPRCasFinder
CGGGGTCTCCCGCAGGCGCCCCCCGGTGAACCCGCCTCCCGTAGGCGCGCCCCTCCCGTGAACCCGCCCCCCGTGGGCCCGCCCCCCGGGTAGACCCGCCTCCCGCAGGCGCGCCCC

>NZ_CP023697|10|11|6593331-6593447|CRISPRCasFinder
CGGGGTCTCCCGCAGGCGCCCCCC	GGTGAACCCGCCTCCCGTAGGC
GCGCCCCTCCCGTGAACCCGCCCC	CCGTGGGCCCGCCCCCCGGGTAG
ACCCGCCTCCCGCAGGCGCGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023697.1\|WP_055606173.1\|6586612_6587365_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP023697.1\|WP_095534535.1\|6595380_6596604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055606176.1\|6580768_6581830_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226967
NZ_CP023697.1\|WP_150475554.1\|6587618_6588761_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|368448
NZ_CP023697.1\|WP_055606171.1\|6581850_6583827_-\|dipeptide/oligopeptide/nickel-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP023697.1\|WP_055605859.1\|6602489_6602732_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023697.1\|WP_055605856.1\|6597642_6598872_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379140
NZ_CP023697.1\|WP_150475555.1\|6588788_6590282_+\|exo-alpha-sialidase	unknown	unknown	gnl\|CDD\|271234
NZ_CP023697.1\|WP_079060807.1\|6599435_6600569_-\|cobalamin-binding-protein	unknown	unknown	gnl\|CDD\|227345
NZ_CP023697.1\|WP_055606172.1\|6583826_6584777_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP023697.1\|WP_150475556.1\|6591401_6592406_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|366120
NZ_CP023697.1\|WP_055605860.1\|6602938_6604153_+\|phospholipase	unknown	unknown	gnl\|CDD\|234967
NZ_CP023697.1\|WP_055606177.1\|6584862_6586422_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173853
NZ_CP023697.1\|WP_055608076.1\|6594364_6595222_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP023697.1\|WP_150475557.1\|6592402_6593077_+\|putative-N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|234907
NZ_CP023697.1\|WP_055689086.1\|6590445_6591405_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP023697.1\|WP_055605857.1\|6598934_6599378_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP023697.1\|WP_150475558.1\|6593609_6594350_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224046
NZ_CP023697.1\|WP_079060808.1\|6600565_6602185_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP023697.1\|WP_055608074.1\|6596600_6597566_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|376518

Protein	Function_ID	Function_description	E-value
NZ_CP023697.1\|WP_055606173.1\|6586612_6587365_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.23346e-47
NZ_CP023697.1\|WP_055605856.1\|6597642_6598872_+\|hypothetical-protein	gnl\|CDD\|379140	pfam13360, PQQ_2, PQQ-like domain. This domain contains several repeats of the PQQ repeat.	0.00061859
NZ_CP023697.1\|WP_055606176.1\|6580768_6581830_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	2.47047e-120
NZ_CP023697.1\|WP_150475554.1\|6587618_6588761_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|368448	pfam05448, AXE1, Acetyl xylan esterase (AXE1). This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyze the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan.	5.39141e-121
NZ_CP023697.1\|WP_055606171.1\|6581850_6583827_-\|dipeptide/oligopeptide/nickel-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	8.75894e-132
NZ_CP023697.1\|WP_055605860.1\|6602938_6604153_+\|phospholipase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	1.09328e-87
NZ_CP023697.1\|WP_150475555.1\|6588788_6590282_+\|exo-alpha-sialidase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	4.37646e-89
NZ_CP023697.1\|WP_079060807.1\|6599435_6600569_-\|cobalamin-binding-protein	gnl\|CDD\|227345	COG5012, COG5012, Predicted cobalamin binding protein [General function prediction only].	3.25202e-15
NZ_CP023697.1\|WP_055606172.1\|6583826_6584777_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.67954e-98
NZ_CP023697.1\|WP_150475556.1\|6591401_6592406_+\|ROK-family-protein	gnl\|CDD\|366120	pfam00480, ROK, ROK family.	8.07692e-47
NZ_CP023697.1\|WP_055606177.1\|6584862_6586422_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	4.1275e-128
NZ_CP023697.1\|WP_055608076.1\|6594364_6595222_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	8.78432e-64
NZ_CP023697.1\|WP_150475557.1\|6592402_6593077_+\|putative-N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|234907	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase.	2.44902e-97
NZ_CP023697.1\|WP_055689086.1\|6590445_6591405_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	8.99365e-78
NZ_CP023697.1\|WP_055605857.1\|6598934_6599378_-\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	5.6252e-16
NZ_CP023697.1\|WP_150475558.1\|6593609_6594350_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	1.92324e-75
NZ_CP023697.1\|WP_079060808.1\|6600565_6602185_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	3.01152e-40
NZ_CP023697.1\|WP_055608074.1\|6596600_6597566_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|376518	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic. ZnuA includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum. ZnuA is part of the bacterial zinc-uptake complex ZnuABC, whose components are the following families, ZinT, pfam09223, pfam00950, pfam00005, all of which are regulated by the transcription-regulator family FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), a high-affinity zinc-uptake protein. In Gram-negative bacteria the ZnuABC transporter system ensures an adequate import of zinc in Zn2+-poor environments, such as those encountered by pathogens within the infected host.	4.27789e-84

>NZ_CP023697.1|WP_150475557.1|6592402_6593077_+|putative-N-acetylmannosamine-6-phosphate-2-epimerase
MTLPLADALKGRLIVSCQAPPGDPMRQTDTLVRMARAAEAGGAAAVRVNEPEVVAAAVAAVDVPVIGLWKDGDTGVYITPTVRHALALVEAGAAVVAADATARPRPDGSTFAELVEAVHAAGALVMADVSTFDEGREAAARGADFVGTTLSGYVPGTPRQTAPDLALVADLAAAIPVPVIAEGRIATPEQAAEALTAGALSVVVGTAITAPTALTRTFVAGLTP
>NZ_CP023697.1|WP_150475556.1|6591401_6592406_+|ROK-family-protein
MTARRPDAAVIGLDLGGTKIAAALVAADGTVLARHSLPTPANEGAEAVLDALAEAARAVRAPDTGAIGVAAAGVIDPATGTVTSATDTIRGWAGTALAAGLAARTGLPVACDNDVRAAAATELAALREGAAGRGGGATGGDGAPAGPWPTLIYAAVGTGVGGAVAAEGRMLHGAAGIAGHLGHLPSPEAEGLPCTCGATGHLEAIAAGPGITAHYTRMSGVPADRLESVAARAARDDPHATAAIVLGAEAAGRALGGLANALGADHVVVGGGVPRIGALYTDALNAAFAAELMPPLRDLRPVPPGAGSDAAVHGAAALTRTLPLHSPRTTGVLR
>NZ_CP023697.1|WP_055689086.1|6590445_6591405_+|dihydrodipicolinate-synthase-family-protein
MSSSQPLRGVVPPVCTPLDASGEVDTASLTRHVEHLVSGGVHGLFALGSSSEVAFLTDPQRAVALRTVVEAVAGRVPVLAGVIDTTTPRVIAHAEAAREAGADALVATAPFYARTHPVEIAHHFRTLRAAVDLPLYAYDLPVSVHSKLSPALVRELAEDGTIAGLKDSSGDEGGLRRLIVELGGRHGRADGPAPSFSILTGSELTVDAALLAGADGVVPGLGNVDPAGYVRLYDAVRGGDLDGAVKEQERLVELFGMVDAGPAGEMGPNSSAIGAFKHALRLLGVFTHGTTAAPQIQLGDASIAFVEQRLRGAGLLPVR
>NZ_CP023697.1|WP_150475555.1|6588788_6590282_+|exo-alpha-sialidase
MQRRVSLSLTATAAAALTVLAVTTPTAHAADQPAPITAAAGTLTSQNIATAGTGSPHYRIPALTRTTKGTLLAAYDARPTLGDLPGNLGVVLRRSTDGGTTWQAQQVVRKEAAPKGYGDPSLLVDRETGRVFVFYAASVNQGFFGSATGNDENDPDVLQADYSYSDDDGLTWKHERITAEIKNPAWAGMFAASGEGIQLRHGTYKGRLIQQYAIRNNGANYAVSAYSDDHGATWKMGTPVGPGGDENKTVELSDGRVMLNNRSAPYRTVAYSSDGGVTYTPFQQDTELPDPANNGSIARFAPGVAASHPRASWLMFSNTATTNSRSNLTVRLSCDNGRNWPVRKTAEAGSAAYSTLTPLGDGTKGNDRVGMLWERDNYRHITYSSFDLQWLGGVCAPVTVTPPASLPAGRTTEVTVRVVSQNDVTLPSGSVSLTLPSGWSAPSVTVPALNPGQGANMKIPVTVPANATAGKVSTTATYLVRGSQRSYGDHTLTVTAP
>NZ_CP023697.1|WP_150475554.1|6587618_6588761_+|prolyl-oligopeptidase-family-serine-peptidase
MPLTDLTLAECLALRPDLDEPADLDTFWDRTLTQARAAGGPARFTPVDTGLTQVTTYDVTVPGFAGEPVRGWLHLPAGADGPLSCVVEFLGYGRGRGLAHEQVLWANAGHAHFIMDTRGQGWSTAGGDTPDTADVVGTVPGFLTRGAESPHEHYYRRVFTDAVLFTEAARAHPAVDPARTVVTGISQGGGISLAVAALVPGLAGAMPDVPFLCDIRRGALIAGAPPYTEIAEYLRLHRDRAGTVFSTLSYFDGALLASRATAPALFSIAMMDEVCPPSTSFAAYHRYGGDKDLRVYEFNGHEGGGGHHRREQLAWLRERLAPPCRPTAPADAPDPTAPADAPDPTAPADAPDPAASAAPMTPADPAGPTALSALHDPQLA
>NZ_CP023697.1|WP_055606173.1|6586612_6587365_+|FadR-family-transcriptional-regulator
MAVGQGADRRTMPEPKTARQPLRQEVVDGIKAYILRNELRPGDPLPTEPALCEALGASRSSVREAIRILTALDIVEVRHGHGTYVGRLSLSALVESLTFRGLLSPDDDFQVLSDLIEVRELFERGMAERLVASLSDGQIDRLGELVDDMRRAGAGEGRGFVEADRAFHTLLLAPLGNDLVGQLSAAFWDVYVIVAPHLDVFTHEHEAATIANHQRIVDAVRNRDPAEFAAALAEHYAPVRRRITEARARR
>NZ_CP023697.1|WP_055606177.1|6584862_6586422_-|ABC-transporter-substrate-binding-protein
MRYTSALGVATAITASLSACGGPGSTNDESGGSGSGAGTDTIEAGLSYPLSTGFDPMITSGATPFAANMHIFEGLVDLDPATLVARPALATEMPKKINATTYRATLREGATFHDGSAVTADDVVFSFERVLDPKNASLMAQFVPFVDQVKAVDESTVEFKLKHAFALFPSRISVVRIVPKKIAGADAKAFDAKPVGSGPYRFVSAVREDKIVMEAYDKYNGPHPAKAKKMVWRLMSDPSARVSALKSGRVQAIEDVPYIDVKGFTGKDKVESVQSFGLLFLMFNCADKRFEDKRVRQALHYALDTEKIISTALLGNAEAATGYVQATHPDYRKASTVYAHDPARAKKLLADAGVGKLSFTLLVTDTGWVKDIAPLIKESWAAVGIDAKLDIAQSPAQYAKVDKGDFEVLAAPGDPSVFGNDADLLLRWFYYGFWPENRYGWKGSAAYKKTRSLLDQAAREADAEKRKELWGQVTDLVADEAALYPVLHRKLPTAWRDGTLTGFRPLPTTGLSFVDVGRA
>NZ_CP023697.1|WP_055606172.1|6583826_6584777_-|ABC-transporter-permease
MVAFLRLALRRVAMMPVMILGIALLVFVVLQFSPVDPAYNALGDSASPEARAAFAEAQGLDDPLPVRYFAFLADLVQGDLGVTVPPSQPVVDRIATAFPLTLQLTLLGLSLAIVLALVFGVTSAVYRDRWPDQVFRVLSMAGIALPSFWLGVLLIQQFALNMQLLPTGGYVNPADSFGGWLESMALPAIALALPVAASLARLIRTSMVTELDRDYIRTARGSGLPPLMIVRSALRNALVTPLTVLGVKVGYMLSGAVVIEAIFDLPGMGKLILEGVTGGDVGLVQGTVLTIAIAFLVVNVVVDLLYLLVNPRIRTV
>NZ_CP023697.1|WP_055606171.1|6581850_6583827_-|dipeptide/oligopeptide/nickel-ABC-transporter-permease/ATP-binding-protein
MFAPRSLAERLAPGTRLRRLPVPSRIALGVLVVVVLSAVFAPLLTQDPLATGIPAQPPGADHWFGTDRAGRDVFARVVHGARYSLVIGLGATLLALTIGSFLGALAATSRKFADEGVMRSLDVVMSFPPIALAAVLVAVFGPSVPVIIFTIAFVYSPSLARVVRANVLEQYGEDYVAAEQVIGARRGYIVARHVAINCAAPVLVFSTVMVADSIIFEASLSFIGAGVQDPDPSWGSVLAYGRQILLSGGWWATLFPGLCLLLTVLALNVLSEGMTDAAASPDKARTGGAEDGKDVATVAAPVAETPEMRIALTELATRLTAMEPSVPPLAEDAADLLVVRDLTIRFPDRYGDTRVVDGISFTVREGETLGLVGESGCGKSITSLAVMGLLARNAEAEGQILYRGRDLLTLPPKERRALMGPEIAMVYQDAMSSLNPSVLIGTQLKRLTSRGGTRTPAELLDLVGLSPERTLRSYPHELSGGQRQRVLIAMALSRSPRLLIADEPTTALDVTVQAQVVELLVRLRDELGFAMVLVSHDLALVGDLAHRIAVMYAGQVAEAGATRSLLTDPAHHYSRGLLGSVVSLEAGTERLHQIGGVVPAPRAFGAGCRFVSRCAAATELCATTPPPAADRDGAPDHLFACHHPAPVDRSAEPLESAR
>NZ_CP023697.1|WP_055606176.1|6580768_6581830_-|ABC-transporter-ATP-binding-protein
MDPTKAPATASTTASATEPLVRLDRIHVRHRARSGGILRRDAVHALTDASLEVRRGEILGLVGESGCGKSTLARVVTGLQRPTEGQVYFKGRDLWEMPAAERRDDFGASVGVIFQDPSTALNPRLPVRRILRDPLDVHRRGTRAERERRVEELLDLVGLPGHTLEALPGQLSGGQRQRVAIARALALEPELIVADEPTSALDVSVRAQILNLLVDLRARLGLGMVFISHDVQTVRYLADRIAVLYLGRVVEEGGARQVTGGTRHPYTEALLSATPSLLERPERIVLHGPVPSATNPPSGCPFRTRCWKADDACATVFPEATATPEGHRWHCVHPQGLGETAGASLPESAASAT
>NZ_CP023697.1|WP_150475558.1|6593609_6594350_-|ATP-binding-cassette-domain-containing-protein
MTIMFNKTPSPATEDRPPPRVRFTGLCAGYPGRPVLDRIDGEVPASAVTALIGPNGSGKSTLLGVLAGVIRPAAGEVRHDGTRPPAFVPQRGAVGDTLPLTVRQTVEMGRWGERGPWRRLTRRDRTAVDEAMERLGVTALAARQLGELSGGQRQRTLMAQGLAQESDLLLLDEPTTGLDPEARERTTALLTELVADGVTLVHATHDLDAARSADTCLLLRDGRVAGQGPPDRLLTPAALTHLWQPG
>NZ_CP023697.1|WP_055608076.1|6594364_6595222_+|metal-ABC-transporter-permease
MDWLTGPFEVTFVQRALWGGMLVSAICALAGTWVVLRGMAFLGDAMSHGLLPGVALAALLGGNPLVGALLSAAVMTAGVTALGRTPRLSQDTGIGLLFVGMLSLGVIVVSRSQSFAVDLTGFLFGDVLAVREQDLLLLAGALLLALAVSVLGHRAFLALAFDPRKARTLGLRPRLAHAVLLGLLALAIVASFHIVGTLLVLGLLIAPPAAALPWARSVRAVMALAALLGTAATFFGLLLSWHLSTAAGATVSALSVALFFLSHLASGVRHRRRERREPGPAVATA
>NZ_CP023697.1|WP_095534535.1|6595380_6596604_+|hypothetical-protein
MALTLLTTGCADGRNTAGSAPPAGPPASATPHGYVEGAQEKAEQQSRLLLNDPRTGDTRVLDLITGERHEVSRTPGTTALTTDGRFGHLHGADGTRVLDTGAWTVDHGDHAHYYRAAIRDLGRLPGTSGGPEGAGTHVRGDAAVTAVTHADGRAGIHRRADLEAGDLGTPRPLPGTHAGAVVPYAEHLLTLTADAEGAPRAAVYDREGERVPVPDVRCEEPRGDAVTRRGAVFGCADGALLIRADDGTFTAEKIPYGTRVPEGERAADFRHRAGGDTLTAPAGERAVWVLDVTERTWTRVETGPAVAANTAGEGSPLLVLRPDGALHGYDIATGERVARTKPLLEDVPGTGPDATAPRPVLEVDRSRAYLNDPAGRRVYEIDYNDGLRVARTFDLDMEPALMVETGR
>NZ_CP023697.1|WP_055608074.1|6596600_6597566_+|zinc-ABC-transporter-substrate-binding-protein
MRTTAPKRVVPRLRRLLLALISFALAGTATACATGDDRPRVVVTTNILGDVTREIVGDEAEVTVLMKPNADPHSFGLSAVQAAELERADLVVYNGLGLEENVLRHVEAARESGTPALEVGRAVDPLVFRAPADGGPEAGAGQPDPHFWTDPDRMRTAAGLIADRVVEHVDGVDEKTIRARADRYDGRLADLATWMERSFARIPEQRRALVTNHHVFGYLAERFGFRTVGAVVPSGTTLASPSSSDLRSLTGAMREAGVRTVFADSSRPSRLAEVLRTELGGRVRVVALYSESLTERDGGAGTYLRMMRANTTALTDGLTGD
>NZ_CP023697.1|WP_055605856.1|6597642_6598872_+|hypothetical-protein
MNKSIRDRALTGTALALAVSAVLTACGGGGDTSSSSASDTKAQKERKAAKDARDAGALVEEPLVATFDGGLYILDGKTLKLAETIELPGFNRVNPAGDDAHVFVSTDSGFRVLDAARRTLTDITYEGAKPGHVVRHAGRTVLFTDGTGEVTVLDPAGLAGGEKPEGRTYTSAEPHHGVAVELSNGELLTTVGTEEKRTGALVLDEDDKEIARNENCPGVHGEAAARGEAVAVGCEDGVLLYKDGEFTKVDAPDDYGRIGNQAGSEESPVLLGDYKTDPDAELERPTRVSLIDTETAKLRLVDLGTSYSFRSLGRGPHGEALVLGTDGALRVIDPETGEVEKRIPVVGEWQEPLDWQQPRPTLFVRDHTAYVSEPGTRELHAVDIESGEKVTSVTLPKSTDELSGVVPGH
>NZ_CP023697.1|WP_055605857.1|6598934_6599378_-|STAS-domain-containing-protein
MAAFPFAPHVLPLPAETPHTVCLALVGDLDHEVGDEVLHQVLHALRGGEDVRDLRLDCQDLGAVDSAGLAVLLQIHRHTSADGTGFHLDHVGPRLERLLRITGTYEYLTTPQQAAPSAGPTGSAGAAGAAGAAGAAEEDSGTLDSGA
>NZ_CP023697.1|WP_079060807.1|6599435_6600569_-|cobalamin-binding-protein
MTTVPAPDREHRPGRLLVRARPASPHGDDRVREHMDGLWTAVRAADAYSAAEVVADALHAGLDPETVLLDVIGAVQRRVGAEWAANRMSVADEHAATAINDRAVAALAAHRPAPTRGRVTVACVDKEWHALPARLLTEVLRLRGWRVDHLGAQVPTAHLISQIHRAGSTVVCLSASLSTRLPVAHGAVTAVQATGVPVMAGGLAFGVDGRYARLLGADAWASDARGAADRLAAGPLPAPRPPHQAVDDLPHLADQEYTLVARCARGLVRRTFQDLQRRLPALRDYTAEQWERTAEDLAQIVDFLAAALYVDDADVFTGFLTWTAEVLTTRGVPAHVVPPALDLLEGQLRDFPRARRLIADGREALGPFVRGRPASAP
>NZ_CP023697.1|WP_079060808.1|6600565_6602185_-|SpoIIE-family-protein-phosphatase
MTYFPDGLRPGPTTVVSVAAAPCPVVIVDGEGRVVELNESATALFPSALTGRPLPSPEWLTDAQRAPCATTATGTVGDRFFSASPSPLPDGRAAWWLVEETAYRSVLKELEGERERTRFLSEASSALLSSLNLERCMEVTARLAAEYLADAAAVIAPTTARKLPVVMCDRQGHLTRATVSSEPETVPGLAEALRGFPPVPSRWIDPAAAPDWLVPEGFGEVGSLVITPLPGHGVPAGALVLFRRAQRTAFSESEEAFAGLFAARAGAAMSAARLYAEQNTVSDVLMRALLPPSLRQVEGVEFAGGYRPSVDTDRIGGDFYDVHPPGEDSPETFAVLGDVAGKGLEAAVLTGKIRNTLHALLPMADDHGKMLRLLNNAMRNGHSTRFATLVLVSAAREDRDVALRLTSAGHPPPLIVRGDGTVEEADTGGSLVGVLPTVTSRTARIRLLPGESCLLYTDGVTEAKGGPMGDTMFGEQRLRRALAECAGLPASAVVERVLMLTDEWIGDGRHDDIAVLAITAPRGAHLSAVDGTTRGRYTA
>NZ_CP023697.1|WP_055605859.1|6602489_6602732_-|hypothetical-protein
MVIVGIVALCVVLAVLAFLVPRLSHGPERGTQRALGLGSRAGGKAPGPLGRLFSKPFRSSSKAVGRSGSAGRRTRGRLPF
>NZ_CP023697.1|WP_055605860.1|6602938_6604153_+|phospholipase
MKLENTPQRTQSSPSPDRPAGERALRMRRRLERLIGIAATEGNSLVALRNGDEIFPAMLESVRSAEHTVDMMTFVYWRGDIAREFARALAERARAGVRVRLLLDGFGSRTIEKDLLGDMREAGVRVAWFRQPVALSPLKQNHRCHRKALLVDERVAFTGGVGIAEEWCGDARDEHEWRDTHVEVRGPAVDGIAAAFAQNWAECCGELFDERDRFVEHRPEGDAVVQVVRGSASFGWQDMQTLIQVMIQSAEERFRLTTAYFSPDAYFVELLCEASRRGVEVEILLPGPHTDQRVCQLAGQNFYEDLLACGVKIYQYQPTMMHAKIITVDATAALIGSTNFNRRSLEHDEEIMLAVLDEEFTATLDAHFDEDVAVSERIREGRWGRRSLLQRARETAVLPIRRFL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP023697_4	4.2\|2698257\|18\|NZ_CP023697\|CRISPRCasFinder	2698257-2698274	18	NZ_CP023697.1	2698287-2698304	0	1.0
NZ_CP023697_4	4.2\|2698257\|18\|NZ_CP023697\|CRISPRCasFinder	2698257-2698274	18	NZ_CP023697.1	2698302-2698319	1	0.944

1. spacer 4.2|2698257|18|NZ_CP023697|CRISPRCasFinder matches to position: 2698287-2698304, mismatch: 0, identity: 1.0

gtgccgtgcgtacgggtg	CRISPR spacer
gtgccgtgcgtacgggtg	Protospacer
******************

2. spacer 4.2|2698257|18|NZ_CP023697|CRISPRCasFinder matches to position: 2698302-2698319, mismatch: 1, identity: 0.944

gtgccgtgcgtacgggtg	CRISPR spacer
gtgccgtgcgtacggatg	Protospacer
***************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023697_1	1.26\|735193\|37\|NZ_CP023697\|PILER-CR	735193-735229	37	NZ_CP041653	Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence	53501-53537	2	0.946
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	904613-904635	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NC_008738	Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU01, complete sequence	134757-134779	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	506373-506395	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	163629-163651	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NZ_LR134450	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence	86285-86307	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	357273-357295	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NZ_CP016619	Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence	848502-848524	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1556692-1556714	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1561300-1561322	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NC_007961	Nitrobacter hamburgensis X14 plasmid 3, complete sequence	86326-86348	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	391195-391217	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	288138-288160	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NZ_MG879030	Xylella fastidiosa subsp. fastidiosa strain Stag's Leap plasmid pXFSL21, complete sequence	7920-7942	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	MT701598	Streptomyces phage Sitrop, complete genome	16275-16297	2	0.913
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	284183-284205	3	0.87
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	161045-161067	3	0.87
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	NZ_CP015090	Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence	138438-138460	4	0.826
NZ_CP023697_2	2.5\|745429\|45\|NZ_CP023697\|CRISPRCasFinder	745429-745473	45	KY092481	Streptomyces phage PapayaSalad, complete genome	8758-8802	6	0.867
NZ_CP023697_1	1.6\|735183\|48\|NZ_CP023697\|CRT	735183-735230	48	NZ_CP041653	Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence	53500-53547	7	0.854
NZ_CP023697_1	1.7\|735257\|48\|NZ_CP023697\|CRT	735257-735304	48	NZ_CP041653	Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence	53500-53547	7	0.854
NZ_CP023697_1	1.17\|735181\|51\|NZ_CP023697\|CRISPRCasFinder	735181-735231	51	NZ_CP041653	Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence	53499-53549	7	0.863
NZ_CP023697_1	1.18\|735255\|51\|NZ_CP023697\|CRISPRCasFinder	735255-735305	51	NZ_CP041653	Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence	53499-53549	7	0.863
NZ_CP023697_1	1.28\|735558\|32\|NZ_CP023697\|PILER-CR	735558-735589	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	641027-641058	7	0.781
NZ_CP023697_2	2.2\|745213\|43\|NZ_CP023697\|CRISPRCasFinder	745213-745255	43	NZ_LN831788	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence	74605-74647	7	0.837
NZ_CP023697_2	2.5\|745429\|45\|NZ_CP023697\|CRISPRCasFinder	745429-745473	45	MT711975	Streptomyces phage Alderaan, complete genome	15355-15399	7	0.844
NZ_CP023697_1	1.25\|735121\|35\|NZ_CP023697\|PILER-CR	735121-735155	35	NZ_CP022999	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence	1302699-1302733	8	0.771
NZ_CP023697_1	1.25\|735121\|35\|NZ_CP023697\|PILER-CR	735121-735155	35	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	929629-929663	8	0.771
NZ_CP023697_2	2.2\|745213\|43\|NZ_CP023697\|CRISPRCasFinder	745213-745255	43	NZ_CP032230	Streptomyces seoulensis strain KCTC 9819 plasmid unnamed	22310-22352	8	0.814
NZ_CP023697_1	1.24\|735048\|36\|NZ_CP023697\|PILER-CR	735048-735083	36	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	339664-339699	9	0.75
NZ_CP023697_1	1.24\|735048\|36\|NZ_CP023697\|PILER-CR	735048-735083	36	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	9711-9746	9	0.75
NZ_CP023697_1	1.25\|735121\|35\|NZ_CP023697\|PILER-CR	735121-735155	35	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	470802-470836	9	0.743
NZ_CP023697_1	1.25\|735121\|35\|NZ_CP023697\|PILER-CR	735121-735155	35	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	485308-485342	9	0.743
NZ_CP023697_1	1.25\|735121\|35\|NZ_CP023697\|PILER-CR	735121-735155	35	KX344445	Streptomyces phage Nanodon, complete genome	20701-20735	9	0.743
NZ_CP023697_1	1.24\|735048\|36\|NZ_CP023697\|PILER-CR	735048-735083	36	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1187705-1187740	10	0.722
NZ_CP023697_9	9.1\|5471898\|23\|NZ_CP023697\|CRISPRCasFinder	5471898-5471920	23	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1728241-1728263	10	0.565
NZ_CP023697_6	6.2\|4001286\|35\|NZ_CP023697\|CRISPRCasFinder	4001286-4001320	35	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	81288-81322	11	0.686

1. spacer 1.26|735193|37|NZ_CP023697|PILER-CR matches to NZ_CP041653 (Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence) position: , mismatch: 2, identity: 0.946

gtggagctggccgggtagagccggtgggcgatgcgga	CRISPR spacer
gtggaggaggccgggtagagccggtgggcgatgcgga	Protospacer
******  *****************************

2. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
ggaccacggcgcggaccggcggc	Protospacer
 ****** ***************

3. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NC_008738 (Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU01, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
tgaccaccgcgcggaccgggggc	Protospacer
.****************** ***

4. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
ggaccacggcgcggaccggcggc	Protospacer
 ****** ***************

5. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
ggaccacggcgcggaccggcggc	Protospacer
 ****** ***************

6. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NZ_LR134450 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
cgatcacctcgcggaccggcggc	Protospacer
***.**** **************

7. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
cgatcaccgtgcggaccggcggc	Protospacer
***.*****.*************

8. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NZ_CP016619 (Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
cggccaccgcggggaccggcggc	Protospacer
**.******** ***********

9. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
cgaccaccgcgctgaccgacggc	Protospacer
************ *****.****

10. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
cgaccaccgcgctgaccgacggc	Protospacer
************ *****.****

11. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NC_007961 (Nitrobacter hamburgensis X14 plasmid 3, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
cgaccaccgcccggacgggcggc	Protospacer
********** ***** ******

12. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
cggccaccgcgcggaccgggggc	Protospacer
**.**************** ***

13. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
cggccaccgcggggaccggcggc	Protospacer
**.******** ***********

14. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NZ_MG879030 (Xylella fastidiosa subsp. fastidiosa strain Stag's Leap plasmid pXFSL21, complete sequence) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
cgacgaccgcgcggaacggcggc	Protospacer
**** ********** *******

15. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to MT701598 (Streptomyces phage Sitrop, complete genome) position: , mismatch: 2, identity: 0.913

cgaccaccgcgcggaccggcggc	CRISPR spacer
cgaccaccgcgccgactggcggc	Protospacer
************ ***.******

16. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.87

cgaccaccgcgcggaccggcggc	CRISPR spacer
cgtccaccgcgcggaccggcgcg	Protospacer
** ******************

17. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 3, identity: 0.87

cgaccaccgcgcggaccggcggc	CRISPR spacer
cgaccaccgcgcagaccggcgaa	Protospacer
************.********.

18. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to NZ_CP015090 (Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence) position: , mismatch: 4, identity: 0.826

cgaccaccgcgcggaccggcggc	CRISPR spacer
ttggcaccgcgcggaccggcggc	Protospacer
. . *******************

19. spacer 2.5|745429|45|NZ_CP023697|CRISPRCasFinder matches to KY092481 (Streptomyces phage PapayaSalad, complete genome) position: , mismatch: 6, identity: 0.867

gcaacgacagcgacggggcgtacgaagaggacgtcatgcagcgtg	CRISPR spacer
gtttcgacagcgacggcgcgtacgaggaggacgtcatgcagcgcg	Protospacer
*.  ************ ********.*****************.*

20. spacer 1.6|735183|48|NZ_CP023697|CRT matches to NZ_CP041653 (Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence) position: , mismatch: 7, identity: 0.854

gcgaccgcca--gtggagctggccgggtagagccggtgggcgatgcggac	CRISPR spacer
--gtccagcacggtggaggaggccgggtagagccggtgggcgatgcggac	Protospacer
  * **. **  ******  ******************************

21. spacer 1.7|735257|48|NZ_CP023697|CRT matches to NZ_CP041653 (Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence) position: , mismatch: 7, identity: 0.854

gcgaccgcca--gtggagctggccgggtagagccggtgggcgatgcggac	CRISPR spacer
--gtccagcacggtggaggaggccgggtagagccggtgggcgatgcggac	Protospacer
  * **. **  ******  ******************************

22. spacer 1.17|735181|51|NZ_CP023697|CRISPRCasFinder matches to NZ_CP041653 (Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence) position: , mismatch: 7, identity: 0.863

gggcgaccgcca--gtggagctggccgggtagagccggtgggcgatgcggacg	CRISPR spacer
--gcgtccagcacggtggaggaggccgggtagagccggtgggcgatgcggacg	Protospacer
  *** **. **  ******  *******************************

23. spacer 1.18|735255|51|NZ_CP023697|CRISPRCasFinder matches to NZ_CP041653 (Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence) position: , mismatch: 7, identity: 0.863

gggcgaccgcca--gtggagctggccgggtagagccggtgggcgatgcggacg	CRISPR spacer
--gcgtccagcacggtggaggaggccgggtagagccggtgggcgatgcggacg	Protospacer
  *** **. **  ******  *******************************

24. spacer 1.28|735558|32|NZ_CP023697|PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

cgtgggcactgcggccgccgttggggg-aggta	CRISPR spacer
tataggcaccgcggcggccgttgggggcatgt-	Protospacer
..*.*****.***** *********** * **

25. spacer 2.2|745213|43|NZ_CP023697|CRISPRCasFinder matches to NZ_LN831788 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence) position: , mismatch: 7, identity: 0.837

acaactcctgctgccggtagatgctgacttcggcggcttcctg	CRISPR spacer
cgttctcctgctggcggtagatgctgacttcggcggcttcttc	Protospacer
    ********* **************************.*

26. spacer 2.5|745429|45|NZ_CP023697|CRISPRCasFinder matches to MT711975 (Streptomyces phage Alderaan, complete genome) position: , mismatch: 7, identity: 0.844

gcaacgacagcgacggggcgtacgaagaggacgtcatgcagcgtg	CRISPR spacer
cgttcgacagcgacggcgcgtacgaggaggacgtcatgcagcgcg	Protospacer
    ************ ********.*****************.*

27. spacer 1.25|735121|35|NZ_CP023697|PILER-CR matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 8, identity: 0.771

ggtggccgcggacaccaccaccggcaagccggggc	CRISPR spacer
gatatccttcgacatcaccaccggcaggccggggc	Protospacer
*.*. ** . ****.***********.********

28. spacer 1.25|735121|35|NZ_CP023697|PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.771

-ggtggccgcggacaccaccaccggcaagccggggc	CRISPR spacer
aagcgggag-ggacaccacggccggcaagccggggg	Protospacer
 .*.**  * ********* .**************

29. spacer 2.2|745213|43|NZ_CP023697|CRISPRCasFinder matches to NZ_CP032230 (Streptomyces seoulensis strain KCTC 9819 plasmid unnamed) position: , mismatch: 8, identity: 0.814

acaactcctgctgccggtagatgctgacttcggcggcttcctg	CRISPR spacer
cgttctcctgctgccggtagatgctgatctcggcggcttcttc	Protospacer
    ***********************..***********.*

30. spacer 1.24|735048|36|NZ_CP023697|PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.75

gggtggaggccgcgctggtcgacgccgggctcctcg	CRISPR spacer
agctggaggccgcgctggtcgaggccggcctggcga	Protospacer
.* ******************* ***** **  . .

31. spacer 1.24|735048|36|NZ_CP023697|PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.75

gggtggaggccgcgctggtcgacgccgggctcctcg	CRISPR spacer
agctggaggccgcgctggtcgaggccggcctggcga	Protospacer
.* ******************* ***** **  . .

32. spacer 1.25|735121|35|NZ_CP023697|PILER-CR matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.743

ggtggccgcggacaccaccaccggcaagccggggc	CRISPR spacer
gaccggcgcgcgcaccaccaccggcaagccgatcc	Protospacer
*.. * **** .*******************.  *

33. spacer 1.25|735121|35|NZ_CP023697|PILER-CR matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.743

ggtggccgcggacaccaccaccggcaagccggggc	CRISPR spacer
gaccggcgcgcgcaccaccaccggcaagccgatcc	Protospacer
*.. * **** .*******************.  *

34. spacer 1.25|735121|35|NZ_CP023697|PILER-CR matches to KX344445 (Streptomyces phage Nanodon, complete genome) position: , mismatch: 9, identity: 0.743

ggtggccgc-----ggacaccaccaccggcaagccggggc	CRISPR spacer
-----ccactcctgggactccatcaccggcaagccggggt	Protospacer
     **.*     **** ***.****************.

35. spacer 1.24|735048|36|NZ_CP023697|PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

gggtggaggccgcgctggtcgacgccgggctcctcg	CRISPR spacer
ccgtggaggccgcgctggtcgagtccgggacggaag	Protospacer
  ********************  ***** .    *

36. spacer 9.1|5471898|23|NZ_CP023697|CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.565

cgaccaccgcgcggaccggcggc--	CRISPR spacer
--gccgccggaccgcgcggcggtcg	Protospacer
  .**.*** .* *  ******.

37. spacer 6.2|4001286|35|NZ_CP023697|CRISPRCasFinder matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.686

cgctccggccgacgacccctgggcatccggcgctc	CRISPR spacer
gtgcatggccgacgaccccagggcatcctgcggca	Protospacer
   . .************* ******** *** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14306 : 69946

Streptococcus_phage(25.0%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079060640.1\|14306_14942_-\|transposase	transposase	NA	NA	NA	NA
WP_055604414.1\|14874_15060_+	hypothetical protein	NA	NA	NA	NA
WP_055604402.1\|15366_16332_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA
WP_055604413.1\|16424_17105_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_055604401.1\|17176_17413_+	hypothetical protein	NA	NA	NA	NA
WP_055604400.1\|17617_18505_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_055604398.1\|19510_19981_+	hypothetical protein	NA	NA	NA	NA
WP_055571499.1\|21264_22329_-	NAD(+)/NADH kinase	NA	NA	NA	NA
WP_055604396.1\|22438_22561_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_055609015.1\|24524_25046_-	hypothetical protein	NA	NA	NA	NA
WP_141665863.1\|25397_25772_+	hypothetical protein	NA	NA	NA	NA
WP_055609013.1\|26048_26720_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	8.3e-25	32.3
WP_055609018.1\|27536_28511_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_055609017.1\|28986_29607_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_055609012.1\|31246_31447_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	9.3e-17	60.3
WP_055609011.1\|31637_32429_-	hypothetical protein	NA	NA	NA	NA
WP_055609010.1\|32671_34024_+	recombinase	NA	NA	NA	NA
WP_055609016.1\|35969_36476_-	hypothetical protein	NA	NA	NA	NA
WP_055609007.1\|36597_37221_-	hypothetical protein	NA	NA	NA	NA
WP_055609006.1\|37530_38304_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_055609005.1\|38394_39486_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_167532510.1\|39474_39633_-	hypothetical protein	NA	NA	NA	NA
WP_141665862.1\|39666_40122_-	hypothetical protein	NA	NA	NA	NA
WP_055609003.1\|40114_40552_-	hypothetical protein	NA	NA	NA	NA
WP_150475028.1\|41161_41623_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_150475029.1\|41784_42462_-	FCD domain-containing protein	NA	NA	NA	NA
WP_055609537.1\|42653_43841_+	4-oxalomesaconate tautomerase	NA	NA	NA	NA
WP_055609538.1\|43837_44863_+	amidohydrolase	NA	NA	NA	NA
WP_055609539.1\|44898_45582_+	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase	NA	NA	NA	NA
WP_055609540.1\|45602_46526_+	amidohydrolase family protein	NA	NA	NA	NA
WP_055609541.1\|46578_47958_+	MFS transporter	NA	NA	NA	NA
WP_095534608.1\|48322_49139_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_055609543.1\|49763_50456_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.3e-33	39.3
WP_055609544.1\|50452_51904_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_150475030.1\|52109_54260_-	MMPL family transporter	NA	NA	NA	NA
WP_079061173.1\|54347_54758_-	hypothetical protein	NA	NA	NA	NA
WP_055609459.1\|56012_56249_+	hypothetical protein	NA	NA	NA	NA
WP_055609460.1\|56297_56558_+	hypothetical protein	NA	NA	NA	NA
WP_055609461.1\|56621_57758_+	amidohydrolase	NA	NA	NA	NA
WP_055609462.1\|58240_59218_-	DMT family transporter	NA	NA	NA	NA
WP_079060925.1\|59493_61074_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_055605648.1\|61350_64140_+	hypothetical protein	NA	NA	NA	NA
WP_079060788.1\|64786_65290_+	3-oxoacid CoA-transferase subunit B	NA	NA	NA	NA
WP_167532598.1\|66220_67102_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_167532511.1\|68544_68688_+	hypothetical protein	NA	NA	NA	NA
WP_055605646.1\|68757_69063_+\|transposase	transposase	Q9ETV7	Enterobacteria_phage	3.9e-06	37.9
WP_079060786.1\|69059_69380_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_079060785.1\|69337_69946_+\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

80451 : 152290

Mycobacterium_phage(25.0%)

transposase,integrase

attL 141922:141938|attR 154462:154478

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055609049.1\|80451_81291_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_055609049.1\|81553_82393_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_055609813.1\|82849_83719_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.0e-07	28.5
WP_055609812.1\|83912_84911_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_055608837.1\|84936_85929_-	glycoside hydrolase family 11 protein	NA	NA	NA	NA
WP_055608838.1\|86833_87553_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	2.5e-27	37.2
WP_150475031.1\|87865_88771_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_055609225.1\|88955_89795_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_055609224.1\|89839_90616_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_055609222.1\|91735_92533_-	alpha/beta hydrolase	A0A0A1ELD0	Mycobacterium_phage	3.6e-11	34.8
WP_055609221.1\|92622_93876_-	MFS transporter	NA	NA	NA	NA
WP_055609220.1\|93976_94549_+	TetR/AcrR family transcriptional regulator C-terminal ligand-binding domain-containing protein	NA	NA	NA	NA
WP_055609219.1\|94557_94860_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_079060925.1\|97475_99056_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_055606459.1\|103873_105238_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_055606458.1\|106979_107789_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.4e-21	32.8
WP_055606456.1\|109519_109858_-	DUF4387 domain-containing protein	NA	NA	NA	NA
WP_055606462.1\|109850_111221_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA
WP_055606455.1\|111280_112261_-	hydroxyacid dehydrogenase	M1I636	Acanthocystis_turfacea_Chlorella_virus	1.7e-18	31.8
WP_055606454.1\|112346_113618_-	MFS transporter	NA	NA	NA	NA
WP_055606453.1\|113614_114700_-	tartrate dehydrogenase	NA	NA	NA	NA
WP_055606452.1\|114836_115772_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_055606450.1\|116215_116617_-	hypothetical protein	NA	NA	NA	NA
WP_167532512.1\|117371_117545_-	hypothetical protein	NA	NA	NA	NA
WP_055606448.1\|117534_118122_+	hypothetical protein	NA	NA	NA	NA
WP_150475032.1\|118741_119224_-	hypothetical protein	NA	NA	NA	NA
WP_095534526.1\|119220_119874_-	DUF4913 domain-containing protein	NA	NA	NA	NA
WP_141665817.1\|120457_120697_+	hypothetical protein	NA	NA	NA	NA
WP_055607843.1\|120869_121775_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_055607842.1\|121855_122962_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA
WP_055607841.1\|122964_124368_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_055607840.1\|124373_125129_-	(5-formylfuran-3-yl)methyl phosphate synthase	NA	NA	NA	NA
WP_055607846.1\|126455_127124_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA
WP_055607839.1\|127129_129229_-	potassium-transporting ATPase subunit KdpB	M1HBF8	Paramecium_bursaria_Chlorella_virus	5.4e-30	25.1
WP_055607838.1\|129261_130923_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_055607837.1\|130930_131020_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_055607836.1\|132163_133153_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_055607845.1\|134223_134973_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_055607835.1\|135131_136037_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_055607834.1\|136181_136499_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_055607833.1\|136595_137585_+	alpha/beta hydrolase	A0A167RJ59	Powai_lake_megavirus	2.2e-18	27.2
WP_055605210.1\|139400_139709_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_141665707.1\|140501_141425_-	hypothetical protein	NA	NA	NA	NA
WP_055605208.1\|141543_142107_-	kinase	NA	NA	NA	NA
141922:141938	attL	NA	NA	NA	NA
WP_055605207.1\|142099_142903_-	hypothetical protein	NA	NA	NA	NA
WP_055605206.1\|143235_143724_-	hypothetical protein	NA	NA	NA	NA
WP_055605205.1\|144669_144927_+	hypothetical protein	NA	NA	NA	NA
WP_055605204.1\|145610_146594_+	phosphotransferase	NA	NA	NA	NA
WP_079060739.1\|146642_147896_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.4e-166	70.5
WP_055605212.1\|149367_149904_-	hypothetical protein	NA	NA	NA	NA
WP_055605203.1\|150406_150769_-	hypothetical protein	NA	NA	NA	NA
WP_167532599.1\|151450_152290_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
154462:154478	attR	NA	NA	NA	NA

DBSCAN-SWA_3

730877 : 744967

Mycobacterium_phage(50.0%)

transposase,integrase

attL 719010:719026|attR 742863:742879

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
719010:719026	attL	NA	NA	NA	NA
WP_055606369.1\|730877_731978_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_167532523.1\|732013_732139_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_167532524.1\|732180_732588_-	WhiB family transcriptional regulator	A0A2P1N2X5	Mycobacterium_phage	4.4e-05	40.6
WP_150475066.1\|733503_733809_+\|transposase	transposase	NA	NA	NA	NA
WP_167532525.1\|733811_734717_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.3e-36	37.6
WP_079061224.1\|735685_737974_-	CRISPR-associated endonuclease Cas3''	NA	NA	NA	NA
WP_079061226.1\|738292_739003_+	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_055609826.1\|739004_740837_+	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA
WP_055609827.1\|740894_741764_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA
WP_167532515.1\|742091_743036_-\|transposase	transposase	NA	NA	NA	NA
742863:742879	attR	NA	NA	NA	NA
WP_167532515.1\|743145_744090_-\|transposase	transposase	NA	NA	NA	NA
WP_055605551.1\|744196_744967_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

864609 : 929241

Tupanvirus(50.0%)

transposase,integrase,tRNA

attL 858461:858476|attR 872185:872200

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
858461:858476	attL	NA	NA	NA	NA
WP_055605450.1\|864609_867228_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_055605451.1\|867224_868403_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_055605453.1\|869501_870464_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_079060764.1\|870798_872463_+	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	5.4e-41	28.3
872185:872200	attR	NA	NA	NA	NA
WP_055605471.1\|873767_874640_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA
WP_055605456.1\|874695_876738_-	aminodeoxychorismate synthase component I	A0A0B5J984	Pandoravirus	2.2e-121	38.4
WP_055605457.1\|876775_877096_-	chorismate mutase family protein	NA	NA	NA	NA
WP_095534436.1\|877190_878060_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_055605459.1\|878052_878811_-	hypothetical protein	NA	NA	NA	NA
WP_063885557.1\|879588_880437_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_055605461.1\|881515_882475_-	methyltransferase	NA	NA	NA	NA
WP_055605462.1\|882580_883885_-	hypothetical protein	NA	NA	NA	NA
WP_055605463.1\|884008_884368_-	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_055605464.1\|884831_885059_-	MbtH family protein	NA	NA	NA	NA
WP_079060765.1\|885125_886214_-	histidinol-phosphate aminotransferase family protein	A0A1X6WGT4	Pacmanvirus	7.7e-12	24.1
WP_167532527.1\|886331_893288_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	1.7e-72	25.4
WP_150475076.1\|893445_894840_-	hypothetical protein	NA	NA	NA	NA
WP_167532528.1\|894857_899006_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	1.3e-62	23.5
WP_141665880.1\|899017_910153_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	3.3e-142	25.3
WP_063885663.1\|911486_912557_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_167532529.1\|912645_918222_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	2.2e-62	23.5
WP_055608842.1\|918277_918505_+	MbtH family protein	NA	NA	NA	NA
WP_079061104.1\|918765_920484_+	gamma-glutamyltransferase	NA	NA	NA	NA
WP_079061101.1\|920517_921036_+	VOC family protein	NA	NA	NA	NA
WP_141665850.1\|921032_922040_+	L-tyrosine 3-hydroxylase	NA	NA	NA	NA
WP_055608846.1\|922132_923011_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_079061102.1\|923185_923851_+\|tRNA	methionyl-tRNA formyltransferase	A4JWM2	Burkholderia_virus	1.4e-35	44.6
WP_079061103.1\|923923_924979_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_055608847.1\|925518_927186_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_150475079.1\|927094_928009_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.6e-34	38.4
WP_055607704.1\|928092_929241_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.8e-36	34.2

DBSCAN-SWA_5

4338347 : 4407874

uncultured_Caudovirales_phage(18.18%)

holin,transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055606585.1\|4338347_4339547_+\|protease	MarP family serine protease	NA	NA	NA	NA
WP_079040474.1\|4339813_4340002_-	hypothetical protein	NA	NA	NA	NA
WP_055606584.1\|4340189_4341140_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_055606583.1\|4341136_4341625_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_150475384.1\|4341840_4343283_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.1e-53	39.3
WP_055609771.1\|4343650_4345606_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	6.5e-86	41.8
WP_055609772.1\|4345812_4348440_-	bifunctional SulP family inorganic anion transporter/carbonic anhydrase	NA	NA	NA	NA
WP_150475385.1\|4348878_4350150_+	hypothetical protein	NA	NA	NA	NA
WP_055607960.1\|4350244_4351069_+	hypothetical protein	NA	NA	NA	NA
WP_055607959.1\|4351546_4352392_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_055607958.1\|4352953_4354060_+	septum formation initiator	NA	NA	NA	NA
WP_055607962.1\|4354305_4355508_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA
WP_055607957.1\|4355647_4356523_+	hypothetical protein	NA	NA	NA	NA
WP_055607956.1\|4356519_4357308_+	hypothetical protein	NA	NA	NA	NA
WP_055607955.1\|4357432_4357642_+	DUF4244 domain-containing protein	NA	NA	NA	NA
WP_055607954.1\|4357628_4357994_+	hypothetical protein	NA	NA	NA	NA
WP_167532515.1\|4361237_4362182_+\|transposase	transposase	NA	NA	NA	NA
WP_003991900.1\|4362335_4362677_+	anti-sigma factor antagonist BldG	NA	NA	NA	NA
WP_055607880.1\|4362789_4363215_+	ATP-binding protein	NA	NA	NA	NA
WP_055607879.1\|4363782_4366188_+	sodium-translocating pyrophosphatase	NA	NA	NA	NA
WP_055607878.1\|4366382_4366976_+	hypothetical protein	NA	NA	NA	NA
WP_055607877.1\|4367172_4368693_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_055607367.1\|4369190_4369388_+	hypothetical protein	NA	NA	NA	NA
WP_055607366.1\|4369645_4372576_+	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	1.2e-104	33.4
WP_055607365.1\|4372806_4376133_+	dTMP kinase	M1PSC7	Streptococcus_phage	2.6e-34	40.5
WP_055607364.1\|4376422_4377628_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_055607363.1\|4377831_4379427_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_055607362.1\|4379763_4381452_-	bifunctional 3'-5' exonuclease/DNA polymerase	A0A2R4AQ32	Mycobacterium_phage	7.2e-09	24.2
WP_150475386.1\|4381568_4382363_-\|protease	ATP-dependent Clp protease ATP-binding subunit	B5LJM1	Mycobacterium_phage	6.8e-18	41.5
WP_150475387.1\|4382449_4383610_+	DUF2786 domain-containing protein	NA	NA	NA	NA
WP_055609420.1\|4383839_4384385_-	DUF4232 domain-containing protein	NA	NA	NA	NA
WP_055609416.1\|4384486_4385011_-	hypothetical protein	NA	NA	NA	NA
WP_095534603.1\|4385733_4385952_+	DUF397 domain-containing protein	NA	NA	NA	NA
WP_055609414.1\|4386150_4386630_-	ATP-binding protein	NA	NA	NA	NA
WP_055609419.1\|4386993_4387818_+	helix-turn-helix domain-containing protein	A0A1J0MBX1	Streptomyces_phage	7.3e-15	28.3
WP_055609413.1\|4388012_4389473_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_055609412.1\|4389599_4390148_+	DinB family protein	NA	NA	NA	NA
WP_055609411.1\|4390173_4390815_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_055609410.1\|4390923_4391889_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.0e-20	29.4
WP_055609418.1\|4391924_4392653_+	ABC transporter permease	NA	NA	NA	NA
WP_055609409.1\|4392715_4394125_-	glutamate decarboxylase	NA	NA	NA	NA
WP_055609417.1\|4394277_4395564_-	ion channel protein	NA	NA	NA	NA
WP_055609408.1\|4395808_4396570_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_055609407.1\|4396648_4397014_-	YbjQ family protein	NA	NA	NA	NA
WP_055609406.1\|4397150_4398179_+	hypothetical protein	NA	NA	NA	NA
WP_167532568.1\|4398330_4400040_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_055689028.1\|4400243_4400735_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	4.5e-28	45.5
WP_150475389.1\|4400859_4402449_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_065004312.1\|4402515_4403667_+\|protease	zinc-dependent metalloprotease	NA	NA	NA	NA
WP_055609639.1\|4403940_4405026_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_055596571.1\|4405087_4405648_+	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	2.6e-08	26.7
WP_055609640.1\|4405834_4407874_+\|protease	ATP-dependent zinc metalloprotease FtsH	G8DDJ2	Micromonas_pusilla_virus	7.7e-106	44.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023697

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection