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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP043637 Empedobacter brevis strain SE1-3 plasmid pSE1-3-14kb, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP043634 Empedobacter brevis strain SE1-3 chromosome, complete genome 2 crisprs DEDDh,c2c10_CAS-V-U3,cas3,WYL 0 2 2 0
NZ_CP043635 Empedobacter brevis strain SE1-3 plasmid pSE1-3-9kb, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP043636 Empedobacter brevis strain SE1-3 plasmid pSE1-3-20kb, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP043634
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043634_1 1239441-1239568 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043634_2 2344943-2345030 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 MK494087 Mycobacterium phage DBQu4n, complete genome 4647-4676 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 AP018480 Mycobacterium virus D29 DNA, complete sequence 4656-4685 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 KC787102 Mycobacterium phage Chy1, partial genome 4799-4828 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 NC_001900 Mycobacterium phage D29, complete genome 4656-4685 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 MH513985 Mycobacterium phage Tomathan, complete genome 4647-4676 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 MT310885 Mycobacterium phage AN9, complete genome 4646-4675 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 AF022214 Mycobacterium virus D29, complete genome 4656-4685 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 KX897981 Mycobacterium phage StarStuff, complete genome 4647-4676 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 MN234169 Mycobacterium phage Naji, complete genome 4647-4676 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 AP018476 Mycobacterium phage C3 DNA, complete sequence 4646-4675 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 NC_023564 Mycobacterium phage EagleEye, complete genome 5717-5746 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 KX758538 Mycobacterium phage Kerberos, complete genome 4647-4676 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 MT310883 Mycobacterium phage D32, complete genome 4647-4676 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 NC_021318 Mycobacterium phage Chy5, complete genome 5000-5029 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 MT310884 Mycobacterium phage ANI8, complete genome 4646-4675 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 NC_021338 Mycobacterium phage Chy4, complete genome 4658-4687 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 MT310876 Mycobacterium phage VC3, complete genome 4646-4675 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 KX574455 Mycobacterium phage Pomar16, complete genome 4688-4717 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 MT774394 CrAssphage cr271_1, complete genome 89347-89376 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 MF472893 Mycobacterium phage MissWhite, complete genome 4336-4365 5 0.833
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 MF472895 Mycobacterium phage Kimona, complete genome 1618-1647 6 0.8
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 NZ_LR134433 Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 24 200863-200892 6 0.8
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 NC_048807 Erwinia phage pEp_SNUABM_01, complete genome 76876-76905 7 0.767
NZ_CP043634_2 2.1|2344971|32|NZ_CP043634|CRISPRCasFinder 2344971-2345002 32 NC_009425 Enterobacter sp. 638 plasmid pENTE01, complete sequence 149041-149072 7 0.781
NZ_CP043634_1 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder 1239490-1239519 30 MN901521 Halorubrum coriense virus Serpecor1, complete genome 52974-53003 8 0.733
NZ_CP043634_2 2.1|2344971|32|NZ_CP043634|CRISPRCasFinder 2344971-2345002 32 NZ_CP053952 Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence 333581-333612 8 0.75
NZ_CP043634_2 2.1|2344971|32|NZ_CP043634|CRISPRCasFinder 2344971-2345002 32 NZ_CP053949 Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence 463731-463762 8 0.75

1. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to MK494087 (Mycobacterium phage DBQu4n, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

2. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to AP018480 (Mycobacterium virus D29 DNA, complete sequence) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

3. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to KC787102 (Mycobacterium phage Chy1, partial genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

4. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to NC_001900 (Mycobacterium phage D29, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

5. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to MH513985 (Mycobacterium phage Tomathan, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

6. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to MT310885 (Mycobacterium phage AN9, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

7. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to AF022214 (Mycobacterium virus D29, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

8. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to KX897981 (Mycobacterium phage StarStuff, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

9. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to MN234169 (Mycobacterium phage Naji, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

10. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to AP018476 (Mycobacterium phage C3 DNA, complete sequence) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

11. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to NC_023564 (Mycobacterium phage EagleEye, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

12. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to KX758538 (Mycobacterium phage Kerberos, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

13. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to MT310883 (Mycobacterium phage D32, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

14. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to NC_021318 (Mycobacterium phage Chy5, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

15. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to MT310884 (Mycobacterium phage ANI8, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

16. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to NC_021338 (Mycobacterium phage Chy4, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

17. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to MT310876 (Mycobacterium phage VC3, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

18. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to KX574455 (Mycobacterium phage Pomar16, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgacttgac	Protospacer
***************.****** *** .*.

19. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to MT774394 (CrAssphage cr271_1, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
cgggttcgagtcccgttctcggtactattt	Protospacer
*.***********.******* *****  *

20. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to MF472893 (Mycobacterium phage MissWhite, complete genome) position: , mismatch: 5, identity: 0.833

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgaccacct	Protospacer
***************.****** **.*  *

21. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to MF472895 (Mycobacterium phage Kimona, complete genome) position: , mismatch: 6, identity: 0.8

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgctctcgcgaccacgc	Protospacer
***************.****** **.* ..

22. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to NZ_LR134433 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 24) position: , mismatch: 6, identity: 0.8

caggttcgagtcctgttctcgctactaaat---	CRISPR spacer
gaggttcgagtcctcttctcggtac---attta	Protospacer
 ************* ****** ***   **   

23. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to NC_048807 (Erwinia phage pEp_SNUABM_01, complete genome) position: , mismatch: 7, identity: 0.767

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgtcctccctgccagtg	Protospacer
****************.*** **.*.*.  

24. spacer 2.1|2344971|32|NZ_CP043634|CRISPRCasFinder matches to NC_009425 (Enterobacter sp. 638 plasmid pENTE01, complete sequence) position: , mismatch: 7, identity: 0.781

tgttattattttgattcgttcgattattcgaa	CRISPR spacer
tcaacttatctagattcgttcgattattcgta	Protospacer
*    ****.* ****************** *

25. spacer 1.1|1239490|30|NZ_CP043634|CRISPRCasFinder matches to MN901521 (Halorubrum coriense virus Serpecor1, complete genome) position: , mismatch: 8, identity: 0.733

caggttcgagtcctgttctcgctactaaat	CRISPR spacer
caggttcgagtcctgtcctcggcgcttggc	Protospacer
****************.**** ..** ...

26. spacer 2.1|2344971|32|NZ_CP043634|CRISPRCasFinder matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tgttattattttgattcgttcgattattcgaa	CRISPR spacer
cattattgttttgcttcgttcgattagaaaaa	Protospacer
..*****.***** ************   .**

27. spacer 2.1|2344971|32|NZ_CP043634|CRISPRCasFinder matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tgttattattttgattcgttcgattattcgaa	CRISPR spacer
cattattgttttgcttcgttcgattagaaaaa	Protospacer
..*****.***** ************   .**

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 136669 : 142408 6 Bacillus_virus(16.67%) NA NA
DBSCAN-SWA_2 889528 : 907903 18 Escherichia_phage(15.38%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage