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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP043998 Clostridium diolis strain DSM 15410 chromosome, complete genome 8 crisprs DEDDh,RT,cas3,csa3,DinG,WYL,cas6,csm2gr11,csm3gr7,csx10gr5,cas10,csx1 0 6 9 0

Results visualization

1. NZ_CP043998
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043998_1 350180-350262 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043998_2 1316154-1316268 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043998_3 3575113-3575534 TypeIII II-B
6 spacers
cas3,cas6,csm2gr11,csm3gr7,csx10gr5,cas10,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043998_4 3576519-3577887 TypeIII II-B
20 spacers
cas6,cas3,csm2gr11,csm3gr7,csx10gr5,cas10,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043998_5 3586855-3587474 TypeIII II-B
9 spacers
csx1,cas10,csm3gr7,csx10gr5,csm2gr11,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043998_6 4626935-4627031 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043998_7 5405178-5405383 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043998_8 5490319-5490465 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP043998_3 3.2|3575209|36|NZ_CP043998|CRISPRCasFinder 3575209-3575244 36 NC_020843 Vibrio phage 11895-B1 genomic sequence 105305-105340 7 0.806
NZ_CP043998_8 8.1|5490346|33|NZ_CP043998|CRISPRCasFinder 5490346-5490378 33 MT446411 UNVERIFIED: Escherichia virus TH40, complete genome 28967-28999 7 0.788
NZ_CP043998_8 8.1|5490346|33|NZ_CP043998|CRISPRCasFinder 5490346-5490378 33 MT446412 UNVERIFIED: Escherichia virus TH41, complete genome 156610-156642 7 0.788
NZ_CP043998_8 8.1|5490346|33|NZ_CP043998|CRISPRCasFinder 5490346-5490378 33 MT446392 UNVERIFIED: Escherichia virus TH15, complete genome 21954-21986 7 0.788
NZ_CP043998_3 3.4|3575339|35|NZ_CP043998|CRISPRCasFinder 3575339-3575373 35 MF417921 Uncultured Caudovirales phage clone 10F_5, partial genome 37187-37221 9 0.743
NZ_CP043998_3 3.4|3575339|35|NZ_CP043998|CRISPRCasFinder 3575339-3575373 35 MF417895 Uncultured Caudovirales phage clone 10AX_1, partial genome 5840-5874 9 0.743
NZ_CP043998_3 3.4|3575339|35|NZ_CP043998|CRISPRCasFinder 3575339-3575373 35 MF417965 Uncultured Caudovirales phage clone 3S_17, partial genome 489-523 9 0.743
NZ_CP043998_3 3.4|3575339|35|NZ_CP043998|CRISPRCasFinder 3575339-3575373 35 CP016969 Staphylococcus epidermidis strain DAR1907 plasmid unnamed1, complete sequence 18984-19018 9 0.743
NZ_CP043998_3 3.4|3575339|35|NZ_CP043998|CRISPRCasFinder 3575339-3575373 35 MF417901 Uncultured Caudovirales phage clone 9S_1, partial genome 1262-1296 9 0.743
NZ_CP043998_3 3.5|3575404|34|NZ_CP043998|CRISPRCasFinder 3575404-3575437 34 NZ_AP017969 Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence 77894-77927 10 0.706
NZ_CP043998_7 7.1|5405204|34|NZ_CP043998|CRISPRCasFinder 5405204-5405237 34 JX486088 Lactobacillus phage ATCC 8014-B2, complete genome 10237-10270 10 0.706
NZ_CP043998_7 7.3|5405324|34|NZ_CP043998|CRISPRCasFinder 5405324-5405357 34 GU075905 Prochlorococcus phage P-HM2, complete genome 11901-11934 10 0.706

1. spacer 3.2|3575209|36|NZ_CP043998|CRISPRCasFinder matches to NC_020843 (Vibrio phage 11895-B1 genomic sequence) position: , mismatch: 7, identity: 0.806

gtggttaaactttcaaaactttgctaaatggtttga	CRISPR spacer
ttggcacaactttcaaaactttactgaatggtttta	Protospacer
 ***.  ***************.**.******** *

2. spacer 8.1|5490346|33|NZ_CP043998|CRISPRCasFinder matches to MT446411 (UNVERIFIED: Escherichia virus TH40, complete genome) position: , mismatch: 7, identity: 0.788

gaaagttccgttatcatttaaccaaccagtttg	CRISPR spacer
aaaagttccgttttcagttaaccaaccagaagc	Protospacer
.*********** *** ************    

3. spacer 8.1|5490346|33|NZ_CP043998|CRISPRCasFinder matches to MT446412 (UNVERIFIED: Escherichia virus TH41, complete genome) position: , mismatch: 7, identity: 0.788

gaaagttccgttatcatttaaccaaccagtttg	CRISPR spacer
aaaagttccgttttcagttaaccaaccagaagc	Protospacer
.*********** *** ************    

4. spacer 8.1|5490346|33|NZ_CP043998|CRISPRCasFinder matches to MT446392 (UNVERIFIED: Escherichia virus TH15, complete genome) position: , mismatch: 7, identity: 0.788

gaaagttccgttatcatttaaccaaccagtttg	CRISPR spacer
aaaagttccgttttcagttaaccaaccagaggc	Protospacer
.*********** *** ************    

5. spacer 3.4|3575339|35|NZ_CP043998|CRISPRCasFinder matches to MF417921 (Uncultured Caudovirales phage clone 10F_5, partial genome) position: , mismatch: 9, identity: 0.743

gtaggtgacaacagtacaggcaagtcagaaatcgg	CRISPR spacer
caacaagacaacattacaggcaagtcggaaattga	Protospacer
  * . ******* ************.*****.*.

6. spacer 3.4|3575339|35|NZ_CP043998|CRISPRCasFinder matches to MF417895 (Uncultured Caudovirales phage clone 10AX_1, partial genome) position: , mismatch: 9, identity: 0.743

gtaggtgacaacagtacaggcaagtcagaaatcgg	CRISPR spacer
caacaagacaacattacaggcaagtcggaaattga	Protospacer
  * . ******* ************.*****.*.

7. spacer 3.4|3575339|35|NZ_CP043998|CRISPRCasFinder matches to MF417965 (Uncultured Caudovirales phage clone 3S_17, partial genome) position: , mismatch: 9, identity: 0.743

gtaggtgacaacagtacaggcaagtcagaaatcgg	CRISPR spacer
caacaagacaacattacaggcaagtcggaaattga	Protospacer
  * . ******* ************.*****.*.

8. spacer 3.4|3575339|35|NZ_CP043998|CRISPRCasFinder matches to CP016969 (Staphylococcus epidermidis strain DAR1907 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

gtaggtgacaacagtacaggcaagtcagaaatcgg	CRISPR spacer
caacaagacaacattacaggcaagtcggaaattga	Protospacer
  * . ******* ************.*****.*.

9. spacer 3.4|3575339|35|NZ_CP043998|CRISPRCasFinder matches to MF417901 (Uncultured Caudovirales phage clone 9S_1, partial genome) position: , mismatch: 9, identity: 0.743

gtaggtgacaacagtacaggcaagtcagaaatcgg	CRISPR spacer
caacaagacaacattacaggcaagtcggaaattga	Protospacer
  * . ******* ************.*****.*.

10. spacer 3.5|3575404|34|NZ_CP043998|CRISPRCasFinder matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 10, identity: 0.706

atgaaaacgtagtaatagctgatgcacaatatgc	CRISPR spacer
gtaatggagtagtaatagatgattcacaatataa	Protospacer
.*.* .. ********** **** ********. 

11. spacer 7.1|5405204|34|NZ_CP043998|CRISPRCasFinder matches to JX486088 (Lactobacillus phage ATCC 8014-B2, complete genome) position: , mismatch: 10, identity: 0.706

ctatattaaagcagatggtatcatggctactggc	CRISPR spacer
cggtattacagcagatggtattatggcaaactat	Protospacer
* .***** ************.***** * . ..

12. spacer 7.3|5405324|34|NZ_CP043998|CRISPRCasFinder matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.706

ttacttacaatcatcaggtgctataaagactggt	CRISPR spacer
agaaacaaaatcatcaggtgctgttaagactgca	Protospacer
  *  .* **************.* *******  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 432223 : 485474 51 Clostridium_phage(16.67%) coat,protease,tRNA NA
DBSCAN-SWA_2 1052501 : 1058123 9 Clostridium_phage(88.89%) transposase NA
DBSCAN-SWA_3 1063839 : 1072426 12 Paenibacillus_phage(33.33%) transposase NA
DBSCAN-SWA_4 1217928 : 1228156 7 Cyanophage(28.57%) NA NA
DBSCAN-SWA_5 2472234 : 2476717 6 Clostridium_virus(16.67%) NA NA
DBSCAN-SWA_6 3634003 : 3642401 10 Clostridium_phage(28.57%) NA NA
DBSCAN-SWA_7 3843747 : 3856287 15 Clostridium_phage(81.82%) terminase,plate,tail NA
DBSCAN-SWA_8 4312655 : 4321845 7 Paenibacillus_phage(33.33%) transposase NA
DBSCAN-SWA_9 5638421 : 5647906 14 Clostridium_phage(37.5%) integrase attL 5639017:5639032|attR 5655959:5655974
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage