CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044173	Campylobacter jejuni strain AR-0412 chromosome, complete genome	1 crisprs	cas1,cas2,cas14k,WYL,DEDDh	0	6	4	0
NZ_CP044174	Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044173_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044173_1

427804-428039

Unclear

Consensus_repeat	Method
TATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATG	CRT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAT	CRISPRCasFinder
TATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATG	PILER-CR

3 spacers

cas2,cas1

The CRISPR arrays of NZ_CP044173_1

>merge|NZ_CP044173|1|427804-428039|CRT,CRISPRCasFinder,PILER-CR
TATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATGACGCTTTTACAATAGGTAAGCTTAATACTATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATGTGGTTAATAGACGCAATTTCTAACTTTAGATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATGCGTCATCTAAACCTAATTGACTAGCAATTATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATA

>NZ_CP044173|1|1|427804-428039|CRT
TATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATG	ACGCTTTTACAATAGGTAAGCTTAATAC
TATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATG	TGGTTAATAGACGCAATTTCTAACTTTA
GATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATG	CGTCATCTAAACCTAATTGACTAGCAAT
TATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATA

>NZ_CP044173|1|1|427805-428038|CRISPRCasFinder
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAT	GACGCTTTTACAATAGGTAAGCTTAATACT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAT	GTGGTTAATAGACGCAATTTCTAACTTTAG
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAT	GCGTCATCTAAACCTAATTGACTAGCAATT
ATTTTACCATAAAGAAATTTAAAAAGGGACTAAAAT

>NZ_CP044173|1|1|427870-428039|PILER-CR
TATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATG	TGGTTAATAGACGCAATTTCTAACTTTA
GATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATG	CGTCATCTAAACCTAATTGACTAGCAAT
TATTTTACCATAAAGAAATTTAAAAAGGGACTAAAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044173.1\|WP_002797819.1\|426345_427236_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP044173.1\|WP_002858151.1\|428157_429348_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP044173.1\|WP_052817643.1\|430021_431563_-\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP044173.1\|WP_002867226.1\|434018_434561_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239153
NZ_CP044173.1\|WP_002779488.1\|429798_430020_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP044173.1\|WP_002851264.1\|436819_437461_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP044173.1\|WP_002872945.1\|419695_420685_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP044173.1\|WP_002872947.1\|418283_419033_-\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP044173.1\|WP_002797817.1\|427228_427660_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP044173.1\|WP_002872948.1\|417577_418309_-\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|225539
NZ_CP044173.1\|WP_002851502.1\|433139_433853_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP044173.1\|WP_151017636.1\|434609_436823_+\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NZ_CP044173.1\|WP_002803269.1\|433827_434019_+\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP044173.1\|WP_126418074.1\|422999_423191_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044173.1\|WP_002872946.1\|419029_419635_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP044173.1\|WP_002781229.1\|429351_429798_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP044173.1\|WP_002855859.1\|414682_415903_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NZ_CP044173.1\|WP_002867225.1\|431686_432835_+\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP044173.1\|WP_151017314.1\|416543_417581_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP044173.1\|WP_002851546.1\|416029_416479_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854

Protein	Function_ID	Function_description	E-value
NZ_CP044173.1\|WP_002797819.1\|426345_427236_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121
NZ_CP044173.1\|WP_002858151.1\|428157_429348_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
NZ_CP044173.1\|WP_052817643.1\|430021_431563_-\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.46573e-121
NZ_CP044173.1\|WP_002867226.1\|434018_434561_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	4.15766e-61
NZ_CP044173.1\|WP_002779488.1\|429798_430020_-\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP044173.1\|WP_002851264.1\|436819_437461_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP044173.1\|WP_002872945.1\|419695_420685_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP044173.1\|WP_002872947.1\|418283_419033_-\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	9.62645e-94
NZ_CP044173.1\|WP_002797817.1\|427228_427660_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.92184e-59
NZ_CP044173.1\|WP_002872948.1\|417577_418309_-\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	1.01848e-97
NZ_CP044173.1\|WP_002851502.1\|433139_433853_+\|hypothetical-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_CP044173.1\|WP_002803269.1\|433827_434019_+\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00537271
NZ_CP044173.1\|WP_151017636.1\|434609_436823_+\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	6.24248e-154
NZ_CP044173.1\|WP_002872946.1\|419029_419635_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	3.97738e-71
NZ_CP044173.1\|WP_002781229.1\|429351_429798_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NZ_CP044173.1\|WP_002855859.1\|414682_415903_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP044173.1\|WP_002867225.1\|431686_432835_+\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP044173.1\|WP_151017314.1\|416543_417581_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	3.0799e-32
NZ_CP044173.1\|WP_002851546.1\|416029_416479_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51

>NZ_CP044173.1|WP_002797817.1|427228_427660_+|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP044173.1|WP_002797819.1|426345_427236_+|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP044173.1|WP_126418074.1|422999_423191_-|hypothetical-protein
MPIFMICSTLLAVIVVAYYILKYNLIFVFFFQILSCLFLLFTSQEHLYQKLQAESIQAFKCFT
>NZ_CP044173.1|WP_002872945.1|419695_420685_+|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGAFKMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFAMPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSRVLENSDAFIIGEICINEGIVLE
>NZ_CP044173.1|WP_002872946.1|419029_419635_-|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADSIAHEILDKYALELAQIFSKFHKKNLLKAEGKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NZ_CP044173.1|WP_002872947.1|418283_419033_-|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNFS
>NZ_CP044173.1|WP_002872948.1|417577_418309_-|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQFFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNA
>NZ_CP044173.1|WP_151017314.1|416543_417581_+|ATP-binding-protein
MKVLNFFYENHPKFEVSCERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEDFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLRF
>NZ_CP044173.1|WP_002851546.1|416029_416479_+|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP044173.1|WP_002855859.1|414682_415903_+|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDEGLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS
>NZ_CP044173.1|WP_002858151.1|428157_429348_-|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP044173.1|WP_002781229.1|429351_429798_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP044173.1|WP_002779488.1|429798_430020_-|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP044173.1|WP_052817643.1|430021_431563_-|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFILINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP044173.1|WP_002867225.1|431686_432835_+|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP044173.1|WP_002851502.1|433139_433853_+|hypothetical-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP044173.1|WP_002803269.1|433827_434019_+|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWEKYYIKAE
>NZ_CP044173.1|WP_002867226.1|434018_434561_+|molybdopterin-dependent-oxidoreductase
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQKGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARI
>NZ_CP044173.1|WP_151017636.1|434609_436823_+|formate-dehydrogenase-subunit-alpha
MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSTQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDEK
>NZ_CP044173.1|WP_002851264.1|436819_437461_+|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044173_1	1.1\|427842\|28\|NZ_CP044173\|CRT	427842-427869	28	MN530981	Campylobacter phage DA10, complete genome	10295-10322	0	1.0
NZ_CP044173_1	1.2\|427908\|28\|NZ_CP044173\|CRT,PILER-CR	427908-427935	28	MN530981	Campylobacter phage DA10, complete genome	6463-6490	0	1.0
NZ_CP044173_1	1.4\|427841\|30\|NZ_CP044173\|CRISPRCasFinder	427841-427870	30	MN530981	Campylobacter phage DA10, complete genome	10294-10323	0	1.0
NZ_CP044173_1	1.3\|427974\|28\|NZ_CP044173\|CRT,PILER-CR	427974-428001	28	MN530981	Campylobacter phage DA10, complete genome	7216-7243	1	0.964
NZ_CP044173_1	1.5\|427907\|30\|NZ_CP044173\|CRISPRCasFinder	427907-427936	30	MN530981	Campylobacter phage DA10, complete genome	6462-6491	1	0.967
NZ_CP044173_1	1.6\|427973\|30\|NZ_CP044173\|CRISPRCasFinder	427973-428002	30	MN530981	Campylobacter phage DA10, complete genome	7215-7244	1	0.967
NZ_CP044173_1	1.3\|427974\|28\|NZ_CP044173\|CRT,PILER-CR	427974-428001	28	NZ_CP032092	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed2, complete sequence	232425-232452	5	0.821
NZ_CP044173_1	1.1\|427842\|28\|NZ_CP044173\|CRT	427842-427869	28	AP013483	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C20A-MedDCM-OCT-S30-C71	6551-6578	6	0.786
NZ_CP044173_1	1.1\|427842\|28\|NZ_CP044173\|CRT	427842-427869	28	AP013484	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C20A-MedDCM-OCT-S36-C79	25405-25432	6	0.786
NZ_CP044173_1	1.2\|427908\|28\|NZ_CP044173\|CRT,PILER-CR	427908-427935	28	MN855769	Siphoviridae sp. isolate 188, complete genome	27350-27377	6	0.786
NZ_CP044173_1	1.4\|427841\|30\|NZ_CP044173\|CRISPRCasFinder	427841-427870	30	AP013483	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C20A-MedDCM-OCT-S30-C71	6550-6579	6	0.8
NZ_CP044173_1	1.4\|427841\|30\|NZ_CP044173\|CRISPRCasFinder	427841-427870	30	AP013484	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C20A-MedDCM-OCT-S36-C79	25404-25433	6	0.8
NZ_CP044173_1	1.6\|427973\|30\|NZ_CP044173\|CRISPRCasFinder	427973-428002	30	NZ_CP032092	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed2, complete sequence	232424-232453	6	0.8
NZ_CP044173_1	1.5\|427907\|30\|NZ_CP044173\|CRISPRCasFinder	427907-427936	30	MN855769	Siphoviridae sp. isolate 188, complete genome	27349-27378	7	0.767
NZ_CP044173_1	1.2\|427908\|28\|NZ_CP044173\|CRT,PILER-CR	427908-427935	28	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	247560-247587	8	0.714
NZ_CP044173_1	1.3\|427974\|28\|NZ_CP044173\|CRT,PILER-CR	427974-428001	28	NC_007110	Rickettsia felis URRWXCal2 plasmid pRF, complete sequence	20324-20351	8	0.714
NZ_CP044173_1	1.3\|427974\|28\|NZ_CP044173\|CRT,PILER-CR	427974-428001	28	NC_019229	Rickettsia felis plasmid pRF, complete sequence	20350-20377	8	0.714
NZ_CP044173_1	1.5\|427907\|30\|NZ_CP044173\|CRISPRCasFinder	427907-427936	30	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	247559-247588	10	0.667
NZ_CP044173_1	1.6\|427973\|30\|NZ_CP044173\|CRISPRCasFinder	427973-428002	30	NC_007110	Rickettsia felis URRWXCal2 plasmid pRF, complete sequence	20323-20352	10	0.667
NZ_CP044173_1	1.6\|427973\|30\|NZ_CP044173\|CRISPRCasFinder	427973-428002	30	NC_019229	Rickettsia felis plasmid pRF, complete sequence	20349-20378	10	0.667

1. spacer 1.1|427842|28|NZ_CP044173|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

acgcttttacaataggtaagcttaatac	CRISPR spacer
acgcttttacaataggtaagcttaatac	Protospacer
****************************

2. spacer 1.2|427908|28|NZ_CP044173|CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tggttaatagacgcaatttctaacttta	CRISPR spacer
tggttaatagacgcaatttctaacttta	Protospacer
****************************

3. spacer 1.4|427841|30|NZ_CP044173|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

gacgcttttacaataggtaagcttaatact	CRISPR spacer
gacgcttttacaataggtaagcttaatact	Protospacer
******************************

4. spacer 1.3|427974|28|NZ_CP044173|CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.964

cgtcatctaaacctaattgactagcaat	CRISPR spacer
cgtcatctaaacctaatttactagcaat	Protospacer
****************** *********

5. spacer 1.5|427907|30|NZ_CP044173|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

gtggttaatagacgcaatttctaactttag	CRISPR spacer
atggttaatagacgcaatttctaactttag	Protospacer
.*****************************

6. spacer 1.6|427973|30|NZ_CP044173|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

gcgtcatctaaacctaattgactagcaatt	CRISPR spacer
gcgtcatctaaacctaatttactagcaatt	Protospacer
******************* **********

7. spacer 1.3|427974|28|NZ_CP044173|CRT,PILER-CR matches to NZ_CP032092 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.821

cgtcatctaaacctaattgactagcaat	CRISPR spacer
cggcatcaaaacctaattgactattagt	Protospacer
** **** *************** .*.*

8. spacer 1.1|427842|28|NZ_CP044173|CRT matches to AP013483 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C20A-MedDCM-OCT-S30-C71) position: , mismatch: 6, identity: 0.786

acgcttttacaataggtaagcttaatac	CRISPR spacer
acgcttttacaatagctaatctttcttt	Protospacer
*************** *** ***  * .

9. spacer 1.1|427842|28|NZ_CP044173|CRT matches to AP013484 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C20A-MedDCM-OCT-S36-C79) position: , mismatch: 6, identity: 0.786

acgcttttacaataggtaagcttaatac	CRISPR spacer
acgcttttacaatagctaatctttcttt	Protospacer
*************** *** ***  * .

10. spacer 1.2|427908|28|NZ_CP044173|CRT,PILER-CR matches to MN855769 (Siphoviridae sp. isolate 188, complete genome) position: , mismatch: 6, identity: 0.786

tggttaatagacgcaatttctaacttta	CRISPR spacer
tggttaatagactcaaattctaacgact	Protospacer
************ *** *******  .

11. spacer 1.4|427841|30|NZ_CP044173|CRISPRCasFinder matches to AP013483 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C20A-MedDCM-OCT-S30-C71) position: , mismatch: 6, identity: 0.8

gacgcttttacaataggtaagcttaatact	CRISPR spacer
gacgcttttacaatagctaatctttctttt	Protospacer
**************** *** ***  * .*

12. spacer 1.4|427841|30|NZ_CP044173|CRISPRCasFinder matches to AP013484 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C20A-MedDCM-OCT-S36-C79) position: , mismatch: 6, identity: 0.8

gacgcttttacaataggtaagcttaatact	CRISPR spacer
gacgcttttacaatagctaatctttctttt	Protospacer
**************** *** ***  * .*

13. spacer 1.6|427973|30|NZ_CP044173|CRISPRCasFinder matches to NZ_CP032092 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

gcgtcatctaaacctaattgactagcaatt	CRISPR spacer
gcggcatcaaaacctaattgactattagtc	Protospacer
*** **** *************** .*.*.

14. spacer 1.5|427907|30|NZ_CP044173|CRISPRCasFinder matches to MN855769 (Siphoviridae sp. isolate 188, complete genome) position: , mismatch: 7, identity: 0.767

gtggttaatagacgcaatttctaactttag	CRISPR spacer
ctggttaatagactcaaattctaacgactg	Protospacer
 ************ *** *******  . *

15. spacer 1.2|427908|28|NZ_CP044173|CRT,PILER-CR matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.714

tggttaatagacgcaatttctaacttta	CRISPR spacer
tggttaaaagacgcaatttcttggcccc	Protospacer
******* ************* . ...

16. spacer 1.3|427974|28|NZ_CP044173|CRT,PILER-CR matches to NC_007110 (Rickettsia felis URRWXCal2 plasmid pRF, complete sequence) position: , mismatch: 8, identity: 0.714

cgtcatctaaacctaattgactagcaat	CRISPR spacer
tcgtatctaaatctaattgactagcttg	Protospacer
.  .*******.*************

17. spacer 1.3|427974|28|NZ_CP044173|CRT,PILER-CR matches to NC_019229 (Rickettsia felis plasmid pRF, complete sequence) position: , mismatch: 8, identity: 0.714

cgtcatctaaacctaattgactagcaat	CRISPR spacer
tcgtatctaaatctaattgactagcttg	Protospacer
.  .*******.*************

18. spacer 1.5|427907|30|NZ_CP044173|CRISPRCasFinder matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.667

gtggttaatagacgcaatttctaactttag	CRISPR spacer
ttggttaaaagacgcaatttcttggccccc	Protospacer
 ******* ************* . ...

19. spacer 1.6|427973|30|NZ_CP044173|CRISPRCasFinder matches to NC_007110 (Rickettsia felis URRWXCal2 plasmid pRF, complete sequence) position: , mismatch: 10, identity: 0.667

gcgtcatctaaacctaattgactagcaatt	CRISPR spacer
atcgtatctaaatctaattgactagcttga	Protospacer
..  .*******.*************

20. spacer 1.6|427973|30|NZ_CP044173|CRISPRCasFinder matches to NC_019229 (Rickettsia felis plasmid pRF, complete sequence) position: , mismatch: 10, identity: 0.667

gcgtcatctaaacctaattgactagcaatt	CRISPR spacer
atcgtatctaaatctaattgactagcttga	Protospacer
..  .*******.*************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

511295 : 523612

Synechococcus_phage(27.27%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002880409.1\|511295_512309_+	Gfo/Idh/MocA family oxidoreductase	A0A1B1IVD1	uncultured_Mediterranean_phage	1.5e-09	29.8
WP_002880408.1\|512295_513006_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA
WP_002880407.1\|512995_513934_+	phosphoglycerate dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	2.3e-28	30.3
WP_002880406.1\|513933_514428_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_052782177.1\|514424_515135_+	inositol monophosphatase	NA	NA	NA	NA
WP_002880404.1\|515158_516208_+	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	6.6e-77	42.0
WP_002880403.1\|516204_517236_+	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	4.7e-144	72.7
WP_002880402.1\|517232_518252_+	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	3.3e-57	39.6
WP_002880401.1\|518239_518845_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	6.3e-16	35.0
WP_002880400.1\|518832_519504_+	NTP transferase domain-containing protein	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	7.8e-07	26.5
WP_144659633.1\|519504_520122_+	hypothetical protein	A0A2H4UUJ1	Bodo_saltans_virus	6.5e-08	26.4
WP_002881520.1\|520114_521389_+	HAD hydrolase-like protein	A0A2H4UUR3	Bodo_saltans_virus	1.5e-19	26.2
WP_002881521.1\|521390_522113_+	class II aldolase/adducin family protein	A0A2H4UUW4	Bodo_saltans_virus	1.5e-11	30.4
WP_002881522.1\|522112_523612_+	NTP transferase domain-containing protein	A0A222YY90	Synechococcus_phage	4.0e-51	27.8

DBSCAN-SWA_2

906345 : 917991

Streptococcus_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151017431.1\|906345_908409_+	N-6 DNA methylase	A0A142K7G3	Mycobacterium_phage	1.3e-23	25.5
WP_151017433.1\|908413_909136_+	DUF3800 domain-containing protein	Q71TB8	Escherichia_phage	4.7e-34	41.6
WP_002873307.1\|909138_909642_+	hypothetical protein	NA	NA	NA	NA
WP_002846150.1\|910078_911311_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	3.8e-84	45.2
WP_002846149.1\|911298_911931_-\|transposase	IS607 family transposase	A0A1V0SJI5	Klosneuvirus	1.2e-41	48.0
WP_002779755.1\|914268_914442_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	4.6e-28	100.0
WP_002909884.1\|914645_915308_+	hypothetical protein	D0R0F7	Streptococcus_phage	1.1e-56	99.1
WP_008976813.1\|915261_915564_+	hypothetical protein	D0R0F7	Streptococcus_phage	1.1e-37	98.8
WP_002853007.1\|916999_917191_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_014516791.1\|917187_917991_+	thiamine biosynthesis protein ThiF	A0A1V0SIK8	Klosneuvirus	4.0e-10	32.4

DBSCAN-SWA_3

981765 : 1033804

Acinetobacter_phage(25.0%)

tRNA,integrase,plate,protease

attL 1015862:1015880|attR 1026582:1026600

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002779653.1\|981765_982674_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_061563619.1\|982670_984392_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002779655.1\|984388_984781_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002813025.1\|984783_986238_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002800584.1\|986239_986725_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_151017453.1\|986793_988041_-	nucleobase:cation symporter	NA	NA	NA	NA
WP_002779659.1\|988166_988613_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002779660.1\|988622_990020_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_151017455.1\|990016_990790_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002779662.1\|991039_991555_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_057992347.1\|991672_995200_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_002882780.1\|995196_996096_+	FHA domain-containing protein	NA	NA	NA	NA
WP_151017457.1\|996099_997368_-	hypothetical protein	NA	NA	NA	NA
WP_151017458.1\|997386_1001319_-	hypothetical protein	NA	NA	NA	NA
WP_002779560.1\|1001587_1001947_-	hypothetical protein	NA	NA	NA	NA
WP_151017460.1\|1001940_1002564_-	lysozyme	A0A068CDE9	Acinetobacter_phage	1.0e-16	37.3
WP_151017642.1\|1003090_1004575_+	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_016818319.1\|1004582_1004900_+	hypothetical protein	NA	NA	NA	NA
WP_052813912.1\|1005044_1006556_+	hypothetical protein	NA	NA	NA	NA
WP_057100317.1\|1006556_1007066_+	hypothetical protein	NA	NA	NA	NA
WP_057100315.1\|1007799_1008297_+	hypothetical protein	NA	NA	NA	NA
WP_151017462.1\|1008415_1008916_+	hypothetical protein	NA	NA	NA	NA
WP_151017644.1\|1009529_1010906_+	hypothetical protein	NA	NA	NA	NA
WP_151017464.1\|1010902_1014325_+	hypothetical protein	NA	NA	NA	NA
WP_151017466.1\|1014335_1015622_+	hypothetical protein	NA	NA	NA	NA
WP_002835248.1\|1015644_1016448_+	hypothetical protein	NA	NA	NA	NA
1015862:1015880	attL	NA	NA	NA	NA
WP_002819580.1\|1019814_1020042_-	hypothetical protein	NA	NA	NA	NA
WP_032600723.1\|1021404_1021632_-	WGR domain-containing protein	NA	NA	NA	NA
WP_002834760.1\|1021643_1021874_-	hypothetical protein	NA	NA	NA	NA
WP_151017468.1\|1022034_1022973_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_100625849.1\|1023907_1024675_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_002854032.1\|1024676_1025798_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.9e-70	38.8
WP_002857878.1\|1025827_1027228_+	potassium transporter TrkA	NA	NA	NA	NA
1026582:1026600	attR	NA	NA	NA	NA
WP_002868670.1\|1027273_1028329_+	3-dehydroquinate synthase	A0A0P0C619	Ostreococcus_mediterraneus_virus	1.3e-27	34.5
WP_044258757.1\|1028325_1029897_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_032582082.1\|1029893_1031144_+\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_052854857.1\|1031147_1032764_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	R4TQL5	Phaeocystis_globosa_virus	1.4e-70	43.9
WP_044261826.1\|1032771_1033188_-	hypothetical protein	NA	NA	NA	NA
WP_052854855.1\|1033285_1033804_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_4

1343385 : 1410629

Campylobacter_phage(43.59%)

tail,integrase,plate,transposase,protease,tRNA,terminase

attL 1359430:1359447|attR 1415231:1415248

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002879315.1\|1343385_1343793_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_002860004.1\|1343789_1344035_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_002781628.1\|1345421_1345865_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_002781630.1\|1345864_1346407_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_151017537.1\|1346403_1347723_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	8.1e-40	28.4
WP_002852114.1\|1347719_1348595_+	GTPase Era	NA	NA	NA	NA
WP_079460596.1\|1348581_1349688_+	hypothetical protein	NA	NA	NA	NA
WP_052854758.1\|1349680_1350229_+	hypothetical protein	NA	NA	NA	NA
WP_052854756.1\|1350313_1350538_+	hypothetical protein	NA	NA	NA	NA
WP_079261378.1\|1350533_1350782_+	peptide transporter	A0A0P0IY73	Acinetobacter_phage	1.0e-17	57.8
WP_019109092.1\|1350793_1350994_+	hypothetical protein	NA	NA	NA	NA
WP_002859995.1\|1351032_1351347_+	amino acid transporter	NA	NA	NA	NA
WP_019108583.1\|1351289_1351748_+	di-/tripeptide transporter	A0A0P0IY73	Acinetobacter_phage	9.9e-30	50.4
WP_052854754.1\|1351744_1353535_+	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	1.4e-159	47.6
WP_002859991.1\|1353655_1355461_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_002852364.1\|1355461_1355956_-	membrane protein	NA	NA	NA	NA
WP_002867727.1\|1355952_1356549_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_002859586.1\|1356545_1357007_-	organic solvent tolerance protein OstA	NA	NA	NA	NA
WP_032586467.1\|1356988_1357504_-	hypothetical protein	NA	NA	NA	NA
WP_002866504.1\|1357494_1357983_-	HAD-IIIA family hydrolase	A0A140XBD6	Dickeya_phage	2.5e-15	41.2
WP_032582492.1\|1357988_1358816_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	5.6e-23	50.0
WP_032586468.1\|1358775_1359894_-	lytic transglycosylase domain-containing protein	A0A218M4G6	Pasteurella_phage	1.6e-09	34.1
1359430:1359447	attL	NA	NA	NA	NA
WP_002872377.1\|1359893_1360709_-	TatD family deoxyribonuclease	NA	NA	NA	NA
WP_032584147.1\|1360699_1361944_-	bile resistance response regulator CbrR	NA	NA	NA	NA
WP_151017539.1\|1362049_1363573_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002872376.1\|1363572_1364433_-	NAD(+) kinase	NA	NA	NA	NA
WP_002872375.1\|1364524_1366276_+\|tRNA	aspartate--tRNA ligase	A0A1V0SAC0	Catovirus	1.0e-10	24.6
WP_002872374.1\|1366272_1366851_+	adenylate kinase	NA	NA	NA	NA
WP_002871349.1\|1366860_1367379_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	6.0e-39	48.6
WP_002872373.1\|1367419_1367917_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_079264093.1\|1368092_1368932_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_002872371.1\|1368960_1369344_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_002872370.1\|1369340_1370114_-	DNA-processing protein DprA	NA	NA	NA	NA
WP_052854747.1\|1370103_1371168_-	hypothetical protein	NA	NA	NA	NA
WP_002872368.1\|1371171_1372194_-	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_151017541.1\|1372312_1374247_+	VacB/RNase II family 3'-5' exoribonuclease	Q0GXV6	Lactococcus_phage	5.9e-39	29.9
WP_151017543.1\|1374239_1375205_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_002873747.1\|1375514_1375715_-	hypothetical protein	NA	NA	NA	NA
WP_052791646.1\|1376009_1376639_+	LexA family transcriptional regulator	A7YGK7	Campylobacter_phage	1.3e-59	98.2
WP_002865000.1\|1376719_1377040_+	hypothetical protein	A7YGI4	Campylobacter_phage	1.3e-52	100.0
WP_002843339.1\|1377049_1377244_+	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_032593226.1\|1377323_1377611_+	hypothetical protein	A7YGE5	Campylobacter_phage	1.1e-47	100.0
WP_039333509.1\|1377638_1378454_-	DNA adenine methylase	A7YGG5	Campylobacter_phage	1.2e-150	99.3
WP_002865380.1\|1378655_1379144_-	virion morphogenesis protein	A7YGE7	Campylobacter_phage	2.0e-89	100.0
WP_151017545.1\|1379147_1381364_-\|tail	phage tail tape measure protein	A7YG87	Campylobacter_phage	0.0e+00	99.6
WP_002865378.1\|1381405_1381711_+	hypothetical protein	A7YGX3	Campylobacter_phage	2.7e-39	100.0
WP_002873740.1\|1381822_1382062_-\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	9.4e-24	93.8
WP_002865376.1\|1382214_1382724_-\|tail	tail protein	A7YG76	Campylobacter_phage	3.3e-90	100.0
WP_151017547.1\|1382750_1383944_-\|tail	phage tail sheath family protein	A7YGA3	Campylobacter_phage	2.1e-196	99.2
WP_038816848.1\|1383954_1384968_-	hypothetical protein	A7YGA4	Campylobacter_phage	4.5e-192	99.7
WP_002873737.1\|1385068_1385440_-	DUF1353 domain-containing protein	A7YGF6	Campylobacter_phage	1.7e-67	99.2
WP_052784262.1\|1385436_1385943_-	DUF4376 domain-containing protein	A7YGY7	Campylobacter_phage	1.6e-84	96.4
WP_002873735.1\|1385952_1387032_-\|tail	phage tail protein	A7YGV0	Campylobacter_phage	3.9e-149	100.0
WP_151017549.1\|1387031_1387652_-\|tail	phage tail protein I	A7YH02	Campylobacter_phage	2.8e-59	96.6
WP_151017551.1\|1387648_1388815_-\|plate	baseplate assembly protein	Q8H9N3	Vibrio_phage	3.0e-14	24.6
WP_002795239.1\|1388811_1389102_-\|plate	baseplate assembly protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_002873733.1\|1389098_1389290_-	hypothetical protein	NA	NA	NA	NA
WP_100608738.1\|1389298_1389931_-\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	7.1e-10	35.5
WP_002784492.1\|1389930_1390245_-	hypothetical protein	NA	NA	NA	NA
WP_002784496.1\|1390356_1390605_-	hypothetical protein	NA	NA	NA	NA
WP_002854893.1\|1390601_1390943_-	hypothetical protein	NA	NA	NA	NA
WP_002870185.1\|1390953_1391343_-	DUF882 domain-containing protein	A0A1X9Q0V8	Human_gokushovirus	4.2e-21	45.9
WP_002784501.1\|1391491_1391926_+	hypothetical protein	NA	NA	NA	NA
WP_002827123.1\|1391927_1392743_+	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_039332528.1\|1392745_1393273_+	hypothetical protein	NA	NA	NA	NA
WP_002872711.1\|1393275_1394253_+	hypothetical protein	R9TRN2	Rhizobium_phage	4.3e-06	23.4
WP_039332530.1\|1394367_1394826_+	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_002803360.1\|1394818_1395418_+	DUF1804 family protein	NA	NA	NA	NA
WP_151017648.1\|1395417_1397088_+\|terminase	phage terminase large subunit	A0A0A1IW02	Pseudomonas_phage	3.3e-91	41.2
WP_002889876.1\|1397097_1398468_+	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	1.0e-16	26.3
WP_052783157.1\|1398469_1399708_+	hypothetical protein	M4M9M5	Vibrio_phage	3.3e-19	29.8
WP_002784519.1\|1399833_1400208_+\|tail	tail protein	NA	NA	NA	NA
WP_002791401.1\|1400200_1400392_+\|tail	tail protein	NA	NA	NA	NA
WP_002852060.1\|1400385_1401363_+\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002784523.1\|1401359_1401644_-	DNA-binding protein	NA	NA	NA	NA
WP_052773576.1\|1401733_1402408_+	deoxyribonuclease	NA	NA	NA	NA
WP_002827134.1\|1402399_1402675_-	hypothetical protein	NA	NA	NA	NA
WP_002876315.1\|1402721_1403171_-	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002890872.1\|1403167_1403860_-	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|1403859_1404129_-	hypothetical protein	NA	NA	NA	NA
WP_052773586.1\|1404125_1405088_-	hypothetical protein	NA	NA	NA	NA
WP_002873718.1\|1405199_1405616_-	hypothetical protein	A0A1B0XVJ5	Campylobacter_phage	5.0e-12	32.5
WP_052773572.1\|1405612_1405885_-	hypothetical protein	NA	NA	NA	NA
WP_002873716.1\|1405948_1406161_-	hypothetical protein	NA	NA	NA	NA
WP_002873715.1\|1406157_1406643_-	host-nuclease inhibitor protein Gam	A0A2K9VGT9	Faecalibacterium_phage	2.4e-18	34.0
WP_032592032.1\|1406751_1407090_-	hypothetical protein	NA	NA	NA	NA
WP_011049637.1\|1407185_1407371_-	hypothetical protein	NA	NA	NA	NA
WP_002891557.1\|1407354_1407558_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_011049638.1\|1407560_1408484_-	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	3.0e-09	25.3
WP_039332557.1\|1408553_1410629_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
1415231:1415248	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage