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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP044227 Flintibacter sp. KGMB00164 chromosome, complete genome 1 crisprs RT,csa3,WYL,DEDDh 0 1 2 0

Results visualization

1. NZ_CP044227
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044227_1 1421616-1421696 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NZ_CP050953 Rhodococcus sp. DMU1 plasmid unnamed 608385-608411 3 0.889
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NZ_CP038031 Rhodococcus ruber strain R1 plasmid unnamed1, complete sequence 3818-3844 3 0.889
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NZ_CP045548 Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence 373919-373945 4 0.852
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NZ_CP027859 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence 142100-142126 4 0.852
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NC_010510 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence 253862-253888 4 0.852
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NC_009620 Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence 810378-810404 4 0.852
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 468121-468147 5 0.815
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NZ_CP012185 Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence 111228-111254 5 0.815
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NZ_CP012182 Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence 34583-34609 5 0.815
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 CP054917 Streptomyces sp. NA02950 plasmid unnamed, complete sequence 116638-116664 5 0.815
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NC_010905 Amycolatopsis benzoatilytica strain DSM 43387 plasmid pA387, complete sequence 9519-9545 5 0.815
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 1668369-1668395 5 0.815
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 2317048-2317074 5 0.815
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 NC_016585 Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence 959793-959819 5 0.815
NZ_CP044227_1 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder 1421643-1421669 27 JN698994 Mycobacterium phage DS6A, complete genome 2419-2445 6 0.778

1. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NZ_CP050953 (Rhodococcus sp. DMU1 plasmid unnamed) position: , mismatch: 3, identity: 0.889

gctgccgaggagagcgccgagggcgag	CRISPR spacer
ggtgccgaggacagcgccgacggcgag	Protospacer
* ********* ******** ******

2. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NZ_CP038031 (Rhodococcus ruber strain R1 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.889

gctgccgaggagagcgccgagggcgag	CRISPR spacer
ggtgccgaggacagcgccgacggcgag	Protospacer
* ********* ******** ******

3. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.852

gctgccgaggagagcgccgagggcgag	CRISPR spacer
accgccgaggagagcgccgagggcggc	Protospacer
.*.**********************. 

4. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 4, identity: 0.852

gctgccgaggagagcgccgagggcgag	CRISPR spacer
gctgccgaggagcgcgacgagggcggc	Protospacer
************ *** ********. 

5. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 4, identity: 0.852

gctgccgaggagagcgccgagggcgag	CRISPR spacer
gacgccgaggagatcgccgaggtcgag	Protospacer
* .********** ******** ****

6. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 4, identity: 0.852

gctgccgaggagagcgccgagggcgag	CRISPR spacer
cccgccgaggcgagcgccgagcgcgag	Protospacer
 *.******* ********** *****

7. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.815

gctgccgaggagagcgccgagggcgag	CRISPR spacer
cgcgccgaggagcgcggcgagggcgag	Protospacer
  .********* *** **********

8. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 5, identity: 0.815

gctgccgaggagagcgccgagggcgag	CRISPR spacer
accgccgaggagaccgccgagggcgtc	Protospacer
.*.********** ***********  

9. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 5, identity: 0.815

gctgccgaggagagcgccgagggcgag	CRISPR spacer
accgccgaggagaccgccgagggcgtc	Protospacer
.*.********** ***********  

10. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to CP054917 (Streptomyces sp. NA02950 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

gctgccgaggagagcgccgagggcgag	CRISPR spacer
ccggccgaggagcgcggcgagggcgat	Protospacer
 * ********* *** ********* 

11. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NC_010905 (Amycolatopsis benzoatilytica strain DSM 43387 plasmid pA387, complete sequence) position: , mismatch: 5, identity: 0.815

gctgccgaggagagcgccgagggcgag	CRISPR spacer
gctgccgaggagaccgccgagaccgcc	Protospacer
************* *******. **  

12. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 5, identity: 0.815

gctgccgaggagagcgccgagggcgag	CRISPR spacer
gacgccgtggagtgcgccgagggcgac	Protospacer
* .**** **** ************* 

13. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 5, identity: 0.815

gctgccgaggagagcgccgagggcgag	CRISPR spacer
agtgccgaggagaccgccgaggccgtg	Protospacer
. *********** ******** ** *

14. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 5, identity: 0.815

gctgccgaggagagcgccgagggcgag	CRISPR spacer
gacgccgagaagggcgccgagggcgat	Protospacer
* .******.**.************* 

15. spacer 1.1|1421643|27|NZ_CP044227|CRISPRCasFinder matches to JN698994 (Mycobacterium phage DS6A, complete genome) position: , mismatch: 6, identity: 0.778

gctgccgaggagagcgccgagggcgag	CRISPR spacer
agcgccgaggccagcgccgagggcgac	Protospacer
. .*******  ************** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 528990 : 584784 45 Bacillus_phage(33.33%) capsid,tail,plate,portal,terminase,protease NA
DBSCAN-SWA_2 1754975 : 1822950 84 Clostridium_phage(23.33%) capsid,tail,plate,portal,terminase,protease,tRNA,head NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage