CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044231	Microbacterium sp. ST-M6 chromosome, complete genome	2 crisprs	csa3,WYL,cas3,DEDDh	2	2	1	0

1. NZ_CP044231

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044231_1

• CRISPR_ID: NZ_CP044231_1
• CRISPR_location: 1247193-1247504
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 6 spacers

Consensus repeat of NZ_CP044231_1

Consensus_repeat	Method
CCCGAAGTCGAGCCCGAGCCCGAG	CRISPRCasFinder

spacers of NZ_CP044231_1

>1.1|1247217|42|NZ_CP044231|CRISPRCasFinder
GTCGCGTCCGCCGAGACGATCGAAACCGGGAACGCTCCCGCG
>1.2|1247283|24|NZ_CP044231|CRISPRCasFinder
ATCGAGGCCTCGCCCGCGCCCGAG
>1.3|1247331|24|NZ_CP044231|CRISPRCasFinder
GTCGTACCCGAGCCCGAGGTCGTA
>1.4|1247379|18|NZ_CP044231|CRISPRCasFinder
GTCGAGCCCCAAGTCGAG
>1.5|1247421|18|NZ_CP044231|CRISPRCasFinder
CCCGAGGTCGAGCCCGAG
>1.6|1247463|18|NZ_CP044231|CRISPRCasFinder
GCCGCACCCGAAGTCGAG

CRISPR arrays and Neighbor proteins around NZ_CP044231_1

CRISPR arrays

The CRISPR arrays of NZ_CP044231_1

>merge|NZ_CP044231|1|1247193-1247504|CRISPRCasFinder
CCGGCAGACGCGATCGAGCCCGAGGTCGCGTCCGCCGAGACGATCGAAACCGGGAACGCTCCCGCGGCCCCAGTCCAGCCCGAGCCCGAAATCGAGGCCTCGCCCGCGCCCGAGCCCGTGGTCGTACCCGAGCCCGAGGTCGTACCCGAGCCCGAGGTCGTACCCGAAGTCGAGCCCGAGCCCGAGGTCGAGCCCCAAGTCGAGCCCGAGGTCGAGCCCCAAGTCGAGCCCGAGGTCGAGCCCGAGGTCGAGCCCGAGCCCGAGCCTGAGGCCGCACCCGAAGTCGAGCCCGAGCCCGAGTCCGCGCACGAG

>NZ_CP044231|1|1|1247193-1247504|CRISPRCasFinder
CCGGCAGACGCGATCGAGCCCGAG	GTCGCGTCCGCCGAGACGATCGAAACCGGGAACGCTCCCGCG
GCCCCAGTCCAGCCCGAGCCCGAA	ATCGAGGCCTCGCCCGCGCCCGAG
CCCGTGGTCGTACCCGAGCCCGAG	GTCGTACCCGAGCCCGAGGTCGTA
CCCGAAGTCGAGCCCGAGCCCGAG	GTCGAGCCCCAAGTCGAG
CCCGAGGTCGAGCCCCAAGTCGAG	CCCGAGGTCGAGCCCGAG
GTCGAGCCCGAGCCCGAGCCTGAG	GCCGCACCCGAAGTCGAG
CCCGAGCCCGAGTCCGCGCACGAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044231.1|WP_150972137.1|1235622_1236429_+|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl|CDD|143605
NZ_CP044231.1|WP_150972145.1|1240605_1242057_+|glycosyl/glycerophosphate-transferase	unknown	unknown	gnl|CDD|367953
NZ_CP044231.1|WP_150972141.1|1237734_1239288_+|PDZ-domain-containing-protein	unknown	unknown	gnl|CDD|273938
NZ_CP044231.1|WP_150974710.1|1234893_1235367_+|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
NZ_CP044231.1|WP_150972161.1|1251583_1252402_+|glutamate-racemase	unknown	unknown	gnl|CDD|234851
NZ_CP044231.1|WP_150974711.1|1254885_1257336_-|ATP-dependent-DNA-ligase	unknown	unknown	gnl|CDD|236599
NZ_CP044231.1|WP_150972171.1|1258304_1259078_-|DedA-family-protein	unknown	unknown	gnl|CDD|182775
NZ_CP044231.1|WP_150972139.1|1236433_1237636_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|236095
NZ_CP044231.1|WP_150892175.1|1249922_1250189_+|DUF3039-domain-containing-protein	unknown	unknown	gnl|CDD|378609
NZ_CP044231.1|WP_150972147.1|1242063_1243158_-|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|133016
NZ_CP044231.1|WP_150972163.1|1252428_1253181_+|ribonuclease-PH	unknown	unknown	gnl|CDD|178914
NZ_CP044231.1|WP_150972158.1|1248307_1249873_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP044231.1|WP_150972150.1|1243200_1244490_+|hypothetical-protein	unknown	unknown	gnl|CDD|367953
NZ_CP044231.1|WP_150972152.1|1244515_1245505_-|hypothetical-protein	unknown	unknown	gnl|CDD|237537
NZ_CP044231.1|WP_150972160.1|1250228_1251545_-|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl|CDD|236426
NZ_CP044231.1|WP_150972169.1|1257404_1258253_+|Ku-protein	unknown	unknown	gnl|CDD|238408
NZ_CP044231.1|WP_150972165.1|1253177_1253777_+|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl|CDD|234648
NZ_CP044231.1|WP_150972154.1|1245609_1246302_-|NTP-transferase-domain-containing-protein	unknown	unknown	gnl|CDD|133014
NZ_CP044231.1|WP_150972167.1|1253957_1254875_+|cation-transporter	unknown	unknown	gnl|CDD|224151
NZ_CP044231.1|WP_150972143.1|1239337_1240609_+|glycosyl/glycerophosphate-transferase	unknown	unknown	gnl|CDD|367953

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP044231.1|WP_150972137.1|1235622_1236429_+|carbon-nitrogen-hydrolase-family-protein	gnl|CDD|143605	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	4.0169e-113
NZ_CP044231.1|WP_150972145.1|1240605_1242057_+|glycosyl/glycerophosphate-transferase	gnl|CDD|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	1.88011e-94
NZ_CP044231.1|WP_150972141.1|1237734_1239288_+|PDZ-domain-containing-protein	gnl|CDD|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	5.55916e-99
NZ_CP044231.1|WP_150974710.1|1234893_1235367_+|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.30469e-14
NZ_CP044231.1|WP_150972161.1|1251583_1252402_+|glutamate-racemase	gnl|CDD|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	8.20762e-121
NZ_CP044231.1|WP_150974711.1|1254885_1257336_-|ATP-dependent-DNA-ligase	gnl|CDD|236599	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed.	0
NZ_CP044231.1|WP_150972171.1|1258304_1259078_-|DedA-family-protein	gnl|CDD|182775	PRK10847, PRK10847, DedA family protein.	1.35367e-42
NZ_CP044231.1|WP_150972139.1|1236433_1237636_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|236095	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC.	0
NZ_CP044231.1|WP_150892175.1|1249922_1250189_+|DUF3039-domain-containing-protein	gnl|CDD|378609	pfam11238, DUF3039, Protein of unknown function (DUF3039). This family of proteins with unknown function appears to be restricted to Actinobacteria.	1.47581e-35
NZ_CP044231.1|WP_150972147.1|1242063_1243158_-|glycosyltransferase-family-2-protein	gnl|CDD|133016	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.	1.07372e-84
NZ_CP044231.1|WP_150972163.1|1252428_1253181_+|ribonuclease-PH	gnl|CDD|178914	PRK00173, rph, ribonuclease PH; Reviewed.	5.54716e-158
NZ_CP044231.1|WP_150972150.1|1243200_1244490_+|hypothetical-protein	gnl|CDD|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	1.64157e-05
NZ_CP044231.1|WP_150972152.1|1244515_1245505_-|hypothetical-protein	gnl|CDD|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.000996617
NZ_CP044231.1|WP_150972160.1|1250228_1251545_-|nicotinate-phosphoribosyltransferase	gnl|CDD|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_CP044231.1|WP_150972169.1|1257404_1258253_+|Ku-protein	gnl|CDD|238408	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.	7.22159e-117
NZ_CP044231.1|WP_150972165.1|1253177_1253777_+|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl|CDD|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	2.59196e-93
NZ_CP044231.1|WP_150972154.1|1245609_1246302_-|NTP-transferase-domain-containing-protein	gnl|CDD|133014	cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide.	1.79679e-43
NZ_CP044231.1|WP_150972167.1|1253957_1254875_+|cation-transporter	gnl|CDD|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	8.77892e-89
NZ_CP044231.1|WP_150972143.1|1239337_1240609_+|glycosyl/glycerophosphate-transferase	gnl|CDD|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	1.13101e-48

Protein sequences

>NZ_CP044231.1|WP_150972154.1|1245609_1246302_-|NTP-transferase-domain-containing-protein
MRLKTVILAAGMGSRLGRSLPKPLTELSDGRSIMRQQHDNIRAAFGDEAQITTVVGYRAEAIVDAFPDADYVYNERYDQTNTSKSLLRALNATGRSGVLWMNGDVVFDPRVLGRAIELIEREQSFVTVNTSKVSDEEVKYTVTPEGHIKELSKTVRGGIGEAVGINYIARQDKRAFMHHLSRVGDQDYFERGLELAIQHDGLLLEPLDISDLYAVEVDFAEDLERANQFV
>NZ_CP044231.1|WP_150972152.1|1244515_1245505_-|hypothetical-protein
MTEKVHRIHSLPDDAPWSGGLPPQGSPEHPLTVRALDRVLAIQRPVVLAHLRSIRLRHPHASTLDIVRILERRYLAAVTTGGAAVGATAVVPGIGTGITLALSGAETLGFLEATTLFAQSVAEVHGMPVDDPDRARALVLTLLLGKEGIDLVAQLARQASGRGPGRDAYWGELITKTLPRVAVGPLVDRLKTSFLHRFAARGGASWLGKALPFGVGAAVGGTGNHILGRRVITTSHQAFGMPPQMLPAELEPRPGAAPIERLAGTGIVRAGSAAVGAAGAAARGAGRAVRSIGAAGRRAGSAAGDARRALTRRSRSEAPEPEQPAESHD
>NZ_CP044231.1|WP_150972150.1|1243200_1244490_+|hypothetical-protein
MGWASDVRKARGLLRRALDNRRAVQTVRARLAAAPPHRPGHAKIAVYFADGAVNMYQMRQWYKPLEKLAETWPVVILSRTATGARALLEETDLPVAFVPTVRNIEQYLATQDIRVVFYVNQNTRNFQMFRYGRRWHVFINHGESDKMYMTTNQFKAYDYAFIAGDAARERLARVLWNYDLDARTIAIGRPQADHYSGALPYTPDERTVVLYAPTWEGDRPSAHYGSIVTHGEALVAALLASGRHRLIYRPHPRSGVVDPEYGAANRRIIAAIAAANAADPTAQHVFDDGPHLGWQLSSADVAIVDISAMVYDRLAADRPLLITRPSDDRAIVDTHGYLSACEWLDADRAADVITETDRVLNDPESVTRLAYWVRHYFGDTSPGAPTARFHAAVQQLMDEWERWNRRSLEQADAAPEVDESEGAEAELDT
>NZ_CP044231.1|WP_150972147.1|1242063_1243158_-|glycosyltransferase-family-2-protein
MHVNAGGARDAPVPPHDAGVSFVMPVLNEIGYLERAVRTVLEQDVPGPMELVLALGPSSDGTTELARRLAEEDERIVLVDNPEADIPTGLNLAIARSTLPTIVRVDAHSELAPGYTTRALQTLERVRAANVGGIMRADGRAPFQRAVARAYNSPFGLGGGAYHGGTREGAAESAYLGVMRRAVIDEIGGFDESLRRGEDWELNLRIRRAGYRVWFDPALSVTYWPRESWTRLARQFRATGAWRGELVRRYGRRNSLRFFAPPALVLAVAASIVVGILQATGVLSGVAALVASVVYLPVLAYLALIVAVAAGPGGGRGWRDKLWTLAVLPTMHLAWGTGFLAGVFSGAHDTVDTSRLGTRNTPLP
>NZ_CP044231.1|WP_150972145.1|1240605_1242057_+|glycosyl/glycerophosphate-transferase
MTTARWGTGDEPALILSGEGPVPASLALVGPRARVSAQAVVTGSVWTATLPLKVARWGGPELPLPSGTYVLEVVPDDGAEQPSPPEPLDLVLFPTLRASLQGWSLQVGPPVDPAYDSGEGQDALERRYASADAELENAVFFESFYGRNASCNPLAIDRELSRRAPGVTRYWSVVDLSVPVPDGAIAVVEGSPEWWRTRGAARLLVVNDWLRRRFVRRRGQTVLQTWHGTPLKRLALHRPGFDPRRAVAVVREARRWNVLLAQNPYAAGIMKRAYAFLGRPIWVEGYPRNDVLTTGDSTAVRAGLGIGPEERVLLYAPTWRDDREEIVDFLDAERLAADTGSVVLVRGHSRTLLPGSDTTGARVIDVTGFPDTSQLLLLADALITDYSSVMFDYSVTGKPMYFLVPDLEHYRGELRGFYFDLLAHAPGPLVRSQEELTAALAAPQGADVTARYESWRARFNAREDGHAAERVVDRILDQGFVER
>NZ_CP044231.1|WP_150972143.1|1239337_1240609_+|glycosyl/glycerophosphate-transferase
MASFSFGAGNAKKLRAIPLYAAGWVLTRLVPRTRDEWVFGCAVGIADGALAVWEQARAGEVPAVWLVDGPEQERDAAARGIPTLRKGSVRALWRTARARVVVITHGFGDVDRYAVSGAFIVQLWHGIPLKRIGIDSPETVRSALLPSSRFVRTVLAAMYRSATRRIGLLPAASHLVRGRLESAFSLPDERVPVVGEPRVDVLSRGSAGERRRTARATLERVTGPIGDRAVVLYAPTWRDGDPDPAIPDAEDWAAISGLLQERDAILLIRSHPLGAGDYRPPAGEDRIRMLGSDRVADVTPLLPGLDVLITDYSSLAFDASLVPLPEIFLAPDVAEYARRRGFYGSFHDVAGDDPARTWPQALGQLDAVLTDPAERERRLARARDLDARVHAYRDGRNAERVYRAIIAAIGADRHPERSGKDTE
>NZ_CP044231.1|WP_150972141.1|1237734_1239288_+|PDZ-domain-containing-protein
MSDIEGTTPEPTAADSSAAGPAASADRDLSRPVGDVPPAARPPQTGSAAPSQASYDTPARPPLPTGAPSAAIPPRPPYPAGYPTYGAPSAPAGAAFGPGAQTAPTTPLADTPAPSAPRKKSGAARTVGLLVAAAIVGGAAGLGGTYAGISLWGTSTEASAGGSSVITVNDTENVNRTTAVAAKVVPSVVTISASSSSGAGTGSGVIISDDGYVLTNTHVVTLDGATADPTITVTTSENRVYKASIVGTDPTYDLAVIKLEDASGLPAIEFADSSKLNVGDQAVAVGAPLGLDNTVTTGIVSALNRSIEIASSAAPDDSSGEDQEEPGDPSEGPFQFDFGQGQATPQSSATIKIAVIQTDAAINPGNSGGALVDDEGRLIGINVAIASSGGTSSGQSGNIGVGFAVPSNIAERIAEEIIETGEATHGLLGATVQNAASLENATIEGAAIAEVTPDGAAAEGGLRAGDVITEFNGVPIDNSVDLTAQVRAAAAGSEASVRYVRDGESRTTDVTLGTLQP
>NZ_CP044231.1|WP_150972139.1|1236433_1237636_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MRTLSGAWRRAAAGAGLLGTDGTTSPTIFAEMSALAARTGAVNLGQGFPDEDGPAVVLEAARDAISAGVNQYPPGRGEASLREAIAEHQQRFYGLAVDAEREVLVTAGATEALAATILALVDGPDDEVVVFEPFYDAYAALVALAGARLVTVPLHWPDFQPDLDRLREAVGDRTRLIIVNDPHNPTGTVFTAEARAEIVRLADRHDAVIVTDEVYEHLLFDGRRHVPMASMPGAAERTVSISSAGKTFSTTGWKIGWLTAPAALVDAVLAVKQFLTYVNGAPFQPAVALGLRLGDEVFAGIAADLQRKRDLLRRGLEAAGFSAARAAGSYFTVADAAPLGATDAHAFCRSLADRAGVVAIPLTAFATAEHRADYATLVRFAACKREDVLTEAARRLTVLR
>NZ_CP044231.1|WP_150972137.1|1235622_1236429_+|carbon-nitrogen-hydrolase-family-protein
MPDPFTLAVAQFAPTADRARNLEAIGEMTAEASAAGARAVVFPEYSSYFVDPFDVSVREHAEAMDGPFVSALTRLAAEQGITVIAGLLEAAGDGRHVHNTVVAVDAGGVRARYRKQHLYDAFGQRESDWVAAGALDAPEIFEVDGVACGLMTCYDLRFPESARTLVDAGAELLLVPAEWVRGPLKEAQWETLLQARAIENTVYVAAADHPPPLGVGRSGIIDPQGVVVATIGTGSGIVLGRIDPDEVARVRRVNPALRLRRYGVHPRD
>NZ_CP044231.1|WP_150974710.1|1234893_1235367_+|MarR-family-transcriptional-regulator
MSGVPRTGVSDNTAVWQVLTAVRAFSDAMDRMYSGMKGEMDMNATDLAALRMLIIREQRDESVSPHDIARHLRISTASTTKLLDRLADAGHLVRKPHPHDGRARIVALTQKSRDSFRAHFRDSMGAMRGVAEEFTDEELAVVTEFLMRMSAAVDPEP
>NZ_CP044231.1|WP_150972158.1|1248307_1249873_+|hypothetical-protein
MVAHVLRLRLALLLGALRGDPRERVRTVLGLVAVVIGVALVCVGITRLGSLSDGAAFVVTVLSGSAIALGYAFAAPVSGTSDQLDPRRFATLGLSPRPLAAAILLAGAISVPMLAVAAVAIALGAMWIGRGAGAAAVIGPVLGFLTCLLLARVGAAVGANVTGERRSRELTGMFLLALLIVLVPVGVFVASLDWGDRVPPQLETAADVLAWTPLGAAWSLPAVAGDAIAFAVSLLVALLTVGLLAVAWFALVNRALTTIERPVVERERGGMGWFTVMPATPGGAIAARSLIYWFRDRRYAVNVLVVPVAAMATTVPLLIAGVPPEIVALVPIPLIALFFGWLPHNDVAYDSTAVWLHIASGVRGVSDRIGRLVPILLIGIPTFAVTVPLAIAVNGRWAHLPALIGVTATLFLSGLGLSSISSVWRPYAVSRPGDSPFQQPQRTGSSGLAGQAFVMLGTLLVSIPTLWWAWIAVTADPSYGVAALVAGLTTGVLVLGVGLAVGALLFERRAGVLMEFVEAAY
>NZ_CP044231.1|WP_150892175.1|1249922_1250189_+|DUF3039-domain-containing-protein
MSTPLDSPDQGGLATLDRELEELIREESIEPGDHERFSHYVKKEKILESALTGKPVRALCGKKWTPGRDPEKFPVCPSCKEIYESLQK
>NZ_CP044231.1|WP_150972160.1|1250228_1251545_-|nicotinate-phosphoribosyltransferase
MSASTALLTDRYELTMIEGALRDGTASRRCVFELFARRLPGGRRFGVVAGTGRLLSLIADFRFGEEELRFLRDGRVVDAETIAFLESFRFSGSLTGYREGELYFPGSPILTVEGTFAEAVILETLALSVLNHDSAVATAAARMSIAAGDRPLAEMGSRRAGERSAVAAARAAYITGFGATSNLEAGRAWEIPTMGTAAHSWTLLHDDEEDAFRAQIAAQGLDTTLLVDTYDIRTGVETAIRVAGPGLGGVRIDSGDLPVVAAAVRAHLDDLGAVDTRITVTSDLDEYAIAALAASPVDAYGVGTSVVTGSGSPTAGMVYKLVARQDADGGWVSVAKASADKASTGGRKSAFRRLREGTATAEVVAVADGFEPLATAAQHPDARPLQVDLIRSGEIMPGFEGPEGVRAARAHHLSVRAELPVRALGLSRSGPAIPTHVV
>NZ_CP044231.1|WP_150972161.1|1251583_1252402_+|glutamate-racemase
MDDAPIGIFDSGVGGLTVARAVSQMLPRESLRYIGDTARSPYGPKPIADVRRYSLEVLDTLVDEGVKMLVIACNTASSAMLRDARERYDVPVIEVIGPAVRTAMSTTRNGRIGVIGTAGTIGSGAYQDMLEVNPGITVFAEACPRFVEFVEAGVTDTPEVLRVAEEYLAPLRHAGVDTLVLGCTHYPFLEGAISYVMGEGVSLVSSDTETAKDVYRQLVSRDLLAGPDAVAHHTYEATGSSADDFITLAHRLMGREVRSVQLVQTGAIDLPR
>NZ_CP044231.1|WP_150972163.1|1252428_1253181_+|ribonuclease-PH
MSEITRVDGRTVDQLRPVTIERGWSAQAEGSALISFGGTKVLCTASFTNGVPRWLTGKGKGWVTAEYAMLPRATNSRNDRESVKGRIGGRTHEISRLIGRALRAVVDTKALGENTIVIDCDVLQADGGTRTAAITGAYVALADAIEWGRAKKFIAQKSTVLLDSVSAVSVGIIDGEPMLDLAYVEDVRAETDMNVVMTGRGLFVEVQGTAEGAPFDKRELDALLQLGADGCADLRDAQLAALADGEDAAR
>NZ_CP044231.1|WP_150972165.1|1253177_1253777_+|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MTSRIVLATHNPHKVSEFQAIVAETRPDLEVVGYDGPEPVEDGVTFAANALIKARAAAAHTGLPALADDSGICVDVLGGAPGVFSAYWAGHKKDARANLDLLLDQLSDVADPHRGAQFRSTIALVVPGGDEHVVEGVWPGRLARSASGSGGFGYDPIFIPDGQPAGSERSVGEWTAEEKNAQSHRARAFAALTPLLASL
>NZ_CP044231.1|WP_150972167.1|1253957_1254875_+|cation-transporter
MHDHASGGGSLRSAGNRRLLAISLGITSTVFLVQVTGAILSGSLALLADAAHMLTDAAALVIALIASVVAARPANDRRTFGYQRAEVFGALINGVILIALSLWVAIEAILRLIEPGEVEVAGGLMLVVAAIGLVANGAAMWLLSTAQRTSLNVRGAYLEVLGDLLGSVAVIVAAVVILTTGWLPADAVASLLIAAMIVPRAIGLLREVASVLSEATPEGMHVREIREHILGTPGVVGVHDVHVWQLTRGAPVFSAHVVVDAQCFASGRADGLLTDLQQCLASHFDVEHSTFQLEPAGHVEHDAHA
>NZ_CP044231.1|WP_150974711.1|1254885_1257336_-|ATP-dependent-DNA-ligase
MAQEQQTVTVGGRRIRLSRLDKILYPVTGTTKAEVVDYYVRIAPLMLPHLEGRPVTRKRWPDGVGDAAHPGSSFFAKDLESSAPEWVRRTGIEHSTGTKSYPLVEDVPTLVWLAQTASLELHTPQWRFTADALPGPPDRLVLDLDPGEGVDLAACAEVARWARRTLEDIGMPPLPVTSGSKGIHLYSPVPAGQTSDSVSALARELARSLEADHPDLVVSAMSKAARPGKVFVDWSQNNGKKTTIAPYSLRGRERPTVAAPRTWDELDSPELAQLEFTAVLERAERMGDPLSALGFRGGERVAERAPLRTYLAKRSADRTPEPVPDHPHADPWPPGGAPRFVIQEHHARRLHYDLRLERDGVFVSWAVPKGVPASASRNHLAVMTEDHPLSYGGFEGTIPRGEYGAGTVTIWDDGSYELEKWRDDEIIFTLAGRPDGPLGRARLALIRTDGEGEKSSWLLHRMKTADGEPPARDSAAAPPPATAPASDPDSRLTPARLRPMLAENASPALARSSARRWSAQWAEIKWDGIRALGFWDGARLLLRARSGTDITARYPEVTGAATFLGDAPAVVDGEIVAFDAEGRPSFTLLQNRMHLTRAAEIRVQAERVPVRFAVFDLLSSSGADLTSRPLRERRALLEERLADASGPFTVPPAFDDVDAALRASAAFDLEGVVVKNPDSTYRPGQRSGDWLKVKHIRTQEIVIGGIRPGRGGRSGTIGSLLMGIPGPDGLRYVGRVGSGFDERTLRRLDELLAPLRSDSTPFMDVPDADASDADWVRPELVGEVAFAETTPDGRLRHARWRGLRPDKSPAEVRPEE
>NZ_CP044231.1|WP_150972169.1|1257404_1258253_+|Ku-protein
MRSIWKGALTFGLVNVPVKVYAATEDHDVSLHQVHEKDGGRIRYQRTCEICGEVVAYKDIDRAYDDGDRTVVLTKEDIAALPAEKSREITVVEFVPSEQVDPITFDRAYFLEPDSSSPKAYVLLRQTLEQTDRTAIVQFSLRQKTRLAALRVRGDVLVLQTLLWADEVRAAQFPALDESVTISDKEMKLSSALVDSFSSDFDPSEFHDDYQEELRTLIEAKLEKGESIDTAETFGERAEEESGGEVIDLMEALRASVERSRGGASSDDKPAKKPAKKSKKAS
>NZ_CP044231.1|WP_150972171.1|1258304_1259078_-|DedA-family-protein
MHTTGLIPWLDPQTIIEAAGPWALVVVCFIVFAETGLLVGFLLPGDTLLVIAGLLSHSTAVAANGIFGVNVWIVALSIGLSAFIGGEVGYLIGHKAGPAIFERKESGLFSKKNVERTNAFFERFGGLTVILARFVPIVRTFAPVAAGVGHMPWRKYSLYNLIGAVIWGVGLTMLGYAIGFVPWIRDIVTEYIDVILIGVVVITAAVTIWHYFRERAKVRREIAEGIDDGVIDSAEARALALDEDVFDPREDTDGPTR

Crispr_ID: NZ_CP044231_2

• CRISPR_ID: NZ_CP044231_2
• CRISPR_location: 2193224-2193307
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP044231_2

Consensus_repeat	Method
GGGACGCTGTCCCATGCCCTGAGC	CRISPRCasFinder

spacers of NZ_CP044231_2

>2.1|2193248|36|NZ_CP044231|CRISPRCasFinder
CGAGGCGAAGGGGTTGTTGCCCGGACGCGGGCCGGC

CRISPR arrays and Neighbor proteins around NZ_CP044231_2

CRISPR arrays

The CRISPR arrays of NZ_CP044231_2

>merge|NZ_CP044231|2|2193224-2193307|CRISPRCasFinder
GGGACGCTGTCCCATGCCCTGAGCCGAGGCGAAGGGGTTGTTGCCCGGACGCGGGCCGGCGGGACGCTGTCCCATGCCCTGAGC

>NZ_CP044231|2|2|2193224-2193307|CRISPRCasFinder
GGGACGCTGTCCCATGCCCTGAGC	CGAGGCGAAGGGGTTGTTGCCCGGACGCGGGCCGGC
GGGACGCTGTCCCATGCCCTGAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044231.1|WP_150973575.1|2189607_2190474_+|A/G-specific-adenine-glycosylase	unknown	unknown	gnl|CDD|224115
NZ_CP044231.1|WP_150974779.1|2202468_2203599_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl|CDD|234737
NZ_CP044231.1|WP_150973565.1|2183668_2185024_+|MFS-transporter	unknown	unknown	gnl|CDD|129794
NZ_CP044231.1|WP_150895489.1|2193918_2194176_-|YlxR-family-protein	unknown	unknown	gnl|CDD|377288
NZ_CP044231.1|WP_150973583.1|2197222_2198023_+|DUF1206-domain-containing-protein	unknown	unknown	gnl|CDD|377695
NZ_CP044231.1|WP_150973589.1|2201064_2202267_-|benzoate/H(+)-symporter-BenE-family-transporter	unknown	unknown	gnl|CDD|225677
NZ_CP044231.1|WP_150973567.1|2185020_2185896_-|hypothetical-protein	unknown	unknown	gnl|CDD|176506
NZ_CP044231.1|WP_150973571.1|2186815_2187775_-|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl|CDD|235536
NZ_CP044231.1|WP_150973563.1|2182880_2183528_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP044231.1|WP_150895480.1|2188273_2188642_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP044231.1|WP_150895482.1|2188638_2189553_-|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl|CDD|235113
NZ_CP044231.1|WP_150973581.1|2195283_2197134_-|hypothetical-protein	unknown	unknown	gnl|CDD|367570
NZ_CP044231.1|WP_150973591.1|2203836_2205759_+|chorismate-binding-protein	unknown	unknown	gnl|CDD|223225
NZ_CP044231.1|WP_150973579.1|2194204_2195191_-|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl|CDD|237061
NZ_CP044231.1|WP_150973573.1|2187771_2188212_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP044231.1|WP_150973569.1|2186065_2186782_+|deoxyribose-phosphate-aldolase	unknown	unknown	gnl|CDD|234784
NZ_CP044231.1|WP_150973585.1|2198029_2199088_-|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl|CDD|224527
NZ_CP044231.1|WP_150973587.1|2199189_2200944_-|proline--tRNA-ligase	unknown	unknown	gnl|CDD|236405
NZ_CP044231.1|WP_150973593.1|2205808_2207170_-|PDZ-domain-containing-protein	unknown	unknown	gnl|CDD|100084
NZ_CP044231.1|WP_150895485.1|2190489_2190918_-|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl|CDD|234787

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP044231.1|WP_150973575.1|2189607_2190474_+|A/G-specific-adenine-glycosylase	gnl|CDD|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	3.28863e-81
NZ_CP044231.1|WP_150973565.1|2183668_2185024_+|MFS-transporter	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.44851e-58
NZ_CP044231.1|WP_150895489.1|2193918_2194176_-|YlxR-family-protein	gnl|CDD|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	9.36585e-18
NZ_CP044231.1|WP_150973581.1|2195283_2197134_-|hypothetical-protein	gnl|CDD|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	6.40115e-20
NZ_CP044231.1|WP_150973589.1|2201064_2202267_-|benzoate/H(+)-symporter-BenE-family-transporter	gnl|CDD|225677	COG3135, BenE, Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism].	3.25325e-93
NZ_CP044231.1|WP_150973567.1|2185020_2185896_-|hypothetical-protein	gnl|CDD|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	8.21306e-55
NZ_CP044231.1|WP_150973571.1|2186815_2187775_-|bifunctional-riboflavin-kinase/FAD-synthetase	gnl|CDD|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.49009e-118
NZ_CP044231.1|WP_150974779.1|2202468_2203599_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl|CDD|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP044231.1|WP_150895482.1|2188638_2189553_-|tRNA-pseudouridine(55)-synthase-TruB	gnl|CDD|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	2.66972e-132
NZ_CP044231.1|WP_150973583.1|2197222_2198023_+|DUF1206-domain-containing-protein	gnl|CDD|377695	pfam06724, DUF1206, Domain of Unknown Function (DUF1206). This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.	3.42729e-09
NZ_CP044231.1|WP_150973591.1|2203836_2205759_+|chorismate-binding-protein	gnl|CDD|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	1.84135e-50
NZ_CP044231.1|WP_150973579.1|2194204_2195191_-|transcription-termination/antitermination-protein-NusA	gnl|CDD|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	5.64617e-167
NZ_CP044231.1|WP_150895485.1|2190489_2190918_-|30S-ribosome-binding-factor-RbfA	gnl|CDD|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	6.60537e-46
NZ_CP044231.1|WP_150973569.1|2186065_2186782_+|deoxyribose-phosphate-aldolase	gnl|CDD|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	1.44613e-101
NZ_CP044231.1|WP_150973585.1|2198029_2199088_-|TIGR00730-family-Rossman-fold-protein	gnl|CDD|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	2.75526e-47
NZ_CP044231.1|WP_150973587.1|2199189_2200944_-|proline--tRNA-ligase	gnl|CDD|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP044231.1|WP_150973593.1|2205808_2207170_-|PDZ-domain-containing-protein	gnl|CDD|100084	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.	3.56828e-39

Protein sequences

>NZ_CP044231.1|WP_150895485.1|2190489_2190918_-|30S-ribosome-binding-factor-RbfA
MANERQARLADRIRVLIAERLEKGLRDPRLGFVTITDVRVTGDLQHASVFYTVLGSEQERIDSAAALTAATGMLRSDVGRKLGIRLTPTLEFILDGIPENAGHIEDLLREARERDESVAGLAATAQPAGDADPYVKPREIQD
>NZ_CP044231.1|WP_150973575.1|2189607_2190474_+|A/G-specific-adenine-glycosylase
MPELAPIVNAWFERNARPLPWRAPGFGAWGVLVSEFMLQQTPVERVVPRLQEWLERWPTPADLAAAPPADAVRLWANLGYPRRALWLHRAAVEIRDRHDGRVPRDVDALLALTGVGDYTARAVAVFAYGDHHPVVDTNTRRVLARAVDGRAHPGPPARRDLAAMALQLPAEHDAAARFNAAAMELGAVVCTARAPRCDACPLVAVCAWRNAGYPDTGDTRRRQARYEGSDRQARGAVLRVLREAPEHAAALDQVVPDWPDPRQRDRAIDSLIADGLAEASGGMLRLPR
>NZ_CP044231.1|WP_150895482.1|2188638_2189553_-|tRNA-pseudouridine(55)-synthase-TruB
MRDDRPAAPSGILLVDKPGGMTSHDVVARARKALGTRKIGHAGTLDPMATGLLVLGVGPATRLLTYLVGLDKTYLATIRLGAATDTDDAEGEVTATAGEGLVAAVTDAAIAAGIAQLTGDISQVPSTVSAIKVDGRRAYDRARAGEEVVLKARAVTVSRFDVLAARRTEHLIELDVVVDCTSGTYIRALARDLGAALGVGGHLSALRRTRIGDFDVAEAVPADAMDAGGLLDAAVVAARVMTRLDVDEDQARDLRHGKRLLGAGTLAGRGHLAAVDPAGRLVGILERRGADLKSAMNMPPEESE
>NZ_CP044231.1|WP_150895480.1|2188273_2188642_-|hypothetical-protein
MILWFTLVQVGVAVVAALLCVVLGLAGRRPSDLTVGALALIEVLLIAQIVVALIAPFAGNPPSGSLLEYWVYLVPAALLPPAGVAWALLERSKWSTVIMGVAAAAVAVMVWRMHVIWTVQIG
>NZ_CP044231.1|WP_150973573.1|2187771_2188212_-|hypothetical-protein
MSENAPRRRMSGIGRVLVIVYAIMALAATGRSFVQIVSEFDEAPLAYALSAAAAAVYILATLALIFSGSAIWYRIAWVAIVFELVGVLVVGTLSILDPALFQHPTVWSLFGNGYLFVPLVLPFFGLWWLWVHRSVPASAPLPEPVR
>NZ_CP044231.1|WP_150973571.1|2186815_2187775_-|bifunctional-riboflavin-kinase/FAD-synthetase
MMVFRGPEDVPAGFGPSVVAIGKFDGVHAGHRVVLERAKVDAATRGARVVAVTFDRNPLAVLRPERNPAELVGVPQKLRLLAETGIDATMVLTFDERLALLSPRDFVVDMLVEPLGMCTILVGTDFRFGRGGAGNADLLRELGEEFGFRVDVVDEVRAIDEGRRVSSTWVRELLGAGDVETAAKLLGRPTAVWGEVVHGLKRGRALGFPTANLSASLEGFAPADGVYAGWLIDEAPGLRSGVRYPAAISVGTNPTFGDVTRRQVEAYVLDETDLDLYGHEVEVQFVSRVRGMTAFDGVESLKAQMADDVAQVRAALGRG
>NZ_CP044231.1|WP_150973569.1|2186065_2186782_+|deoxyribose-phosphate-aldolase
MPEITEAQLAATIDHAILKPEFTRADVDAELSIAREWRVFSVCVRPSDIPHAVDRLAGSGVAVGTVIGFPHGTTSTAAKVAEARAAIEAGATELDMVVNIGWLRSGFDDAVVEDIRAVKDAAGSRVLKVILETSLLDEEQIARGSRLTEAGGADFVKTSTGFAGGGATVPHVRLMRENVSDAVQVKASGGVRSLATALEMLDAGATRLGTSGSATILGELRSILAGGTAAGRVDESSY
>NZ_CP044231.1|WP_150973567.1|2185020_2185896_-|hypothetical-protein
MHPPRASRGLPALATLVALAAVSVIVAVLGASPPAVGATEALGAARSPGEPAFVASHRGGAAHAPENTLPAVSRAFDDGFDYVEVDVALTRDRVPVLLHDQTVDRTTDGAGELASLSWADVSALDAGAWFSPAYAGTRVPRVEEFLDLVAERNGRAIVELKGPWDGEAAAALVSAIEQRGLERSITVASFDARTLALVGSASPVLSRMVVLRALPDDVVHAASLAGVRGVIASRRAVAERPEVVAQLHEAGLRIAVYTLNSDEQWREATSLGVDGIITDDPTGLFRWQQDA
>NZ_CP044231.1|WP_150973565.1|2183668_2185024_+|MFS-transporter
MDAARPSDRTVLLVAILASFVSFLDGTVVTVALPAIERDVGGGLATQQWVVDAYLVTLGAFILVAGSLSDAFGRIRILRIGLLIFGVSSVAIALAPDPLTLILLRAVQGVGGALLVPSSLALITSHFAGAARSRAIGIWTGATTVATLVGPVVGGLFVDLLSWRWVFVLNVLPIALTLVLLVRGGLRDARVPGARIDIPGAALCTIGLGALVFALIEQPRLGWDSPAVWIAGIGGILGVVGFVLRQRVAPSPLMPLSLFSARNFWAGNLSTFFVYAALSLNGLVVAVYLQQGAGLSATLAGLATLPPTVLMILFSSRVGALAGKLGPRLFMTAGPALMAVGALLLLTVADDFDYLTQVLPGLLAFGAGLTLTVAPLTSAVLSAVPAERSGIASAVNNAVARVAGLVSVALLGVVVAGDLDLEGFHRAAIVTAALMAAGAVASFAGIRDPRR
>NZ_CP044231.1|WP_150973563.1|2182880_2183528_-|hypothetical-protein
MTNTRPRIRTLLAATAVISAAFALAACVPEPDPTGSSPSSPAPSVSASDSAEPTASVPADRPQTVEISLPASCDALYSPQMRATLEDRLPPLNDPAVTLYSTQLVPALEILESGVPTLRCSWGAPGGAGLSTNVTVLTAEDLPGVQDMLAVNGFGCEDAVGGILCSVQTETLDLDSKLVTRGESHFLRGNGWVATSWVGELPAGYTEDVAATLWG
>NZ_CP044231.1|WP_150895489.1|2193918_2194176_-|YlxR-family-protein
MDAVRTCVGCRTRAPRTDLLRVIAVGSRLVTDDRASMPGRGAWVHETPECMDAAIRRRAFVRALRVSGPLDTQTIEKRLLAMDTK
>NZ_CP044231.1|WP_150973579.1|2194204_2195191_-|transcription-termination/antitermination-protein-NusA
MDIDLGLLRTVEREREIPFEELVAIIEQAILTAYAKHTSPSGELPAGARAHLDRKTGHVAVFVPLLDEEGAVIGEEESAPDDFGRIAAFAAKQVINQRLRDIADDAVLGEFRGKEGDIVAGVIQQGPNPRMVHVDLGSVEAILPPEEQVPGEQYKHGTRIRVYVTSVSKGTKGPQITVSRTHPGLVRKLFALEVPEIASGVVEIVSLAREAGHRTKMAVRTADPSINAKGACIGEMGRRVRSVTEELGGEKIDIVDYDPELAAFVANALSPAKVTSAFVLDSSIKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSILES
>NZ_CP044231.1|WP_150973581.1|2195283_2197134_-|hypothetical-protein
MPETAAPPAPKPPRWRALAGLLEAAPPRVMMLLGAGIALLGSLIVIRPLASLVLLGVYVGVSAILSGLLELVSRHRAPTWWTRALAFVWIAGGVIVLVWLGRSIEFLPAALAILLVVGGLASLGDALGAKRLSVRVLALAWGAAQIAFGVLSLTWPDLTLLVVAVVFGVRTIVFGATLITRGTRRLIAARRPPGAQRAVAEPSRRALAWAAAGRYALSLLLVVGAVGGFGLDDFLSEGAPVVDGFYDPPSDLPLGHGRLIRTGESLGREPDRGSVSRILYTTRDAHGFRAVGSAMVIVPDDPAPGPRPVIIWNHGTTGVARGCAPSLTDGTATKWAIPALEQMLARGWVVVAPDYSGQGAPGTFPYLIGKGEAHSALDAVLAAGEMEDLVLSPQTVVWGHSQGGHAALWTSQLAEEYTPGLDILGTAAFAPAADPVELARELTSGDAGAMLTVLVSWVLVPYADTYADVDLNAYVATGARSIVREMTQRCLSEPGVMVSALTALGLREDSPFDTENLTSGALGRRLAENVPTGPWNTPIFVSWGTRDEVLPTASQRALVERLCAQGEQVRAVPVRGRGHQDILQPRSAMLTDLVRWTDTLRFAAVPPASVLDDCEP
>NZ_CP044231.1|WP_150973583.1|2197222_2198023_+|DUF1206-domain-containing-protein
MTSTKDAARAAEANPVLRTLARAGYAANGVVHALIGAIVLAVASGAGGESDQSGAFKAIAAAPAGFVALWVLAVALGALGIWHGVAAVPVHASDPAKKWGRRVSEAGQAVVFLALGVIAGAVALGAEPSGDDAARAASSGVLAVPGGPFLLGAVGLGVAIAGIAFVVMGVRRSFRTKMTIPGGTVGGLTTALGVFGFIAKGVALFAVGVLLIVAAVRVDPEEAGGLDGAVATLLGLPLGPWLVASIGFGFIAYGVFCGFRARYARL
>NZ_CP044231.1|WP_150973585.1|2198029_2199088_-|TIGR00730-family-Rossman-fold-protein
MPERSIVPRDVTDDIRAVIADAGVSVNVDLVARILATGIGLGMDEASRLNLKITTAALSEMRAAFRLFAPYAGTPKVTIFGSARTRSDDARYLAAAEVAAALAERGWMIVTGAGPGIMQAAVEGAGAERSLGVSIRLPFEQSPNAVVADDARHVAMKYFFTRKLMLVKESQGFVCVPGGFGTLDEMFELLTLQQTGKAEPTPIVLLDEPGGTFWEGLRTFVDDHLIASGVVSTDDFDRVLITDSVEAAANEITGFWRNYDSMRWVGGRLVLRLRAEPDDAEVDELNERFGGLLASGRIERSAPLAREREDDDRLELPRLVLRLNQIKVGSLFRLIRAINDLPSAPPMSRPPV
>NZ_CP044231.1|WP_150973587.1|2199189_2200944_-|proline--tRNA-ligase
MVTRLSHFFLRTLREDPADAEVTSHRLLVRAGYIRRQAPGVFAWLPLGLRVKAKIEQIIRDEMGAAGAYEVHFPALLPREPYEVTGRWEEYGDALFRLQDRKGADYLLAPTHEEVFTLLVKDLYSSYKDLPLTIYQIQDKYRDEARPRAGLLRGREFTMKDAYSFDYTDAGLDASYQAQRDAYERIFQRLGLEYVIVQADAGAMGGSRSEEFLHPTPVGEDTFVRSAGGYAANVEAFTTVVPDALPIEGLPEPVIFDSPDTPTIATLVEHANTHLDGEYTAADTLKNVVFALTHLDGTRELVVVGLPGDRDVDDKRVEVAFAPASVEPATEADFAANPLLVKGYIGPWSPTGAILGEESATGIRYVLDPRVVDGTSWITGANIDQKHVHSLVAGRDFGADGFVEVASVREGDPAPDGSGPVSLARGMEIGHVFQLGRKYADALGLKVLDENGKLVTVTMGSYGIGVTRILAIIAELNNDDRGLIWPTSVAPFDVHVVAAGRDAAAFELAASLSAELETAGLDVLYDDRPKVSPGVKFGDAELIGVPRIVIVGRGAAEGMVEVWDRRTGERETVPAGDVRGILTA
>NZ_CP044231.1|WP_150973589.1|2201064_2202267_-|benzoate/H(+)-symporter-BenE-family-transporter
MIRATHTRDGAGDAPDAARPILAGVVTALVGYTSSFAVVLTGLAAVGATPGQAASGLLALSLTMGLACILLSWRTRMPITVAWSTPGAALLAATGSMEGGWAAVVGAFLVVALLILLTGVWPLLGSIVARIPPSLAQAMLAGVLLPLCLAPVTGLVANPWGVLPVVLTWLVFARLAPRWAVPLAFAAAAIVVIAGLAAEGASVPAAALLPHVELTVPTVTVGSLIGIALPLYIVTMASQNVPGVAVMQSFGYRVPWRPAMLVTGVATALAAPAGGHAVNLAAISAALAAGPDAGPDRTRRWIAGVSTGVSYLVLAAAASVFATLVVLAPAAVIPAVAGLALLGAFGSAVQQAIDDPGERMPAVVTFLVAASGVSFLGVSAAFWALAAGLLVRVVLHTGRR
>NZ_CP044231.1|WP_150974779.1|2202468_2203599_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MPRVPEILSPRRKSRQIRVGKVLVGGDAPVSVQSMTTTKTTDINATLQQIAELTASGCEIVRVAVPSQDDADVLHIIAKKSQIPVIADIHFQPKYVFQAIDAGCAAVRVNPGNIRQFDDKVGEIARAAKDAGVSLRIGVNAGSLDKRLLEKYGRATPEALVESAVWEASLFEEHDFHDFKISVKHNDPVVMVKAYRQLAARGDWPLHLGVTEAGPAFQGTIKSATAFGILLAEGIGDTIRVSLSAPPAEEVKVAHQILQSLNLRERTLEIVSCPSCGRAQVDVYTLAEDVTEGLKDMTVPLRVAVMGCVVNGPGEARDADLGVASGNGKGQIFVKGEVVKTVPESEIVATLIAEANRIAAEMGPDAGIGTAQVVTV
>NZ_CP044231.1|WP_150973591.1|2203836_2205759_+|chorismate-binding-protein
MTGTAAELFSSLASEAAPFALIARDDTWVEVLRGDVVDVDLLADIPLTDADGTAREVLALVPYRQVRERGFVCHDDGAPLRCLVVTSHERVPRADALHALPQAQIALGEPGFDLSDDEYADIVRTVIAEEIGRGEGANFVIRRDFTAAVAADERTAALTWFRALLEHERGAYWTFAVVTDGHVAVGASPEAHVSAQAGIVTMNPISGTFRHPAGGATVETLSTFLESTKETEELFMVVDEELKMMSAVCSDGGRITGPHLKEMSRLTHTEYMLRGTSRLDPRDILRETMFAPTVTGSPMQNACTVIARHEATPRGYYSGVAALFTPNGATDGVTHDLDAPILIRTAYLQDGRLRVPVGATLVRHSEPAGEVGETHGKAAGVLGAIGAVPRDVAPLVAEDPDAPVAERRPLAEDPAIADLLVSRNSRLAAFWLNPQGDADLRPFAGRTAAVVDAEDRFTTMLAHQLRHLGLDVTIVPWADAGSAVLDAADLVVSGPGPGDPRAEDSDRIRRMRDVVDHRLRTGRPLLAVCLSHQILADRLGLGLAPLERPHQGLQLEVDLFGQPASIGFYNTFTARTDPGTTHIGGAEIAASPSGDVYALRGAGFASVQGHLESILSRDGMITLERLVAHALTTAPSIASR
>NZ_CP044231.1|WP_150973593.1|2205808_2207170_-|PDZ-domain-containing-protein
MTIIAFVIGIVVLVVGLAISIALHELGHLAPAKAFGVRVGQYMIGFGPTLWSRRRGETEYGVKAIPLGGYISMAGMYPPGPQDAADAAGAEEQRAAGGAPTITAAGTAARADRRSARGRFFQTMVQDARAVNDETMIGAEDRVFYRLPMWKRIVIMLGGPFMNLVFAMVLFALLFTGIGVQTATSTVASLSDCVPAADGTCQIAETPAAQAGIEPGDRIVSIDGTPVADFAEASALIQAAPDRTLRVVVERDGSERALTVTPVPITTSVTDADGEVREERVGFLGIRPTAEFVRQPIWAGPAAAVENVGAVAGVIVQLPVKVADTAATLFTGEERDPNGPLSVVGASVLAGEVAASEAPVLNRVAGIIGLLGSLNLALCVFNLIPLLPLDGGHVVVALWDGLKRGWARILRRPAPKPVDATRLVPVTFVVVAALGLMGGILILADLVNPISLF

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP044231_1	1.5|1247421|18|NZ_CP044231|CRISPRCasFinder	1247421-1247438	18	NZ_CP044231.1	1026344-1026361	2	0.889
NZ_CP044231_1	1.5|1247421|18|NZ_CP044231|CRISPRCasFinder	1247421-1247438	18	NZ_CP044231.1	1026350-1026367	2	0.889
NZ_CP044231_1	1.5|1247421|18|NZ_CP044231|CRISPRCasFinder	1247421-1247438	18	NZ_CP044231.1	2834654-2834671	2	0.889
NZ_CP044231_1	1.5|1247421|18|NZ_CP044231|CRISPRCasFinder	1247421-1247438	18	NZ_CP044231.1	387697-387714	2	0.889
NZ_CP044231_1	1.5|1247421|18|NZ_CP044231|CRISPRCasFinder	1247421-1247438	18	NZ_CP044231.1	1161363-1161380	2	0.889
NZ_CP044231_1	1.5|1247421|18|NZ_CP044231|CRISPRCasFinder	1247421-1247438	18	NZ_CP044231.1	1914171-1914188	2	0.889
NZ_CP044231_1	1.6|1247463|18|NZ_CP044231|CRISPRCasFinder	1247463-1247480	18	NZ_CP044231.1	2941935-2941952	2	0.889
NZ_CP044231_1	1.6|1247463|18|NZ_CP044231|CRISPRCasFinder	1247463-1247480	18	NZ_CP044231.1	1316694-1316711	2	0.889
NZ_CP044231_1	1.6|1247463|18|NZ_CP044231|CRISPRCasFinder	1247463-1247480	18	NZ_CP044231.1	1886199-1886216	2	0.889

1. spacer 1.5|1247421|18|NZ_CP044231|CRISPRCasFinder matches to position: 1026344-1026361, mismatch: 2, identity: 0.889

cccgaggtcgagcccgag	CRISPR spacer
cccgagcccgagcccgag	Protospacer
****** .**********

2. spacer 1.5|1247421|18|NZ_CP044231|CRISPRCasFinder matches to position: 1026350-1026367, mismatch: 2, identity: 0.889

cccgaggtcgagcccgag	CRISPR spacer
cccgagcccgagcccgag	Protospacer
****** .**********

3. spacer 1.5|1247421|18|NZ_CP044231|CRISPRCasFinder matches to position: 2834654-2834671, mismatch: 2, identity: 0.889

cccgaggtcgagcccgag	CRISPR spacer
cccgaggtcgagttcgag	Protospacer
************..****

4. spacer 1.5|1247421|18|NZ_CP044231|CRISPRCasFinder matches to position: 387697-387714, mismatch: 2, identity: 0.889

cccgaggtcgagcccgag	CRISPR spacer
cccgaggtcgggcacgag	Protospacer
**********.** ****

5. spacer 1.5|1247421|18|NZ_CP044231|CRISPRCasFinder matches to position: 1161363-1161380, mismatch: 2, identity: 0.889

cccgaggtcgagcccgag	CRISPR spacer
ccggacgtcgagcccgag	Protospacer
** ** ************

6. spacer 1.5|1247421|18|NZ_CP044231|CRISPRCasFinder matches to position: 1914171-1914188, mismatch: 2, identity: 0.889

cccgaggtcgagcccgag	CRISPR spacer
cccgagcccgagcccgag	Protospacer
****** .**********

7. spacer 1.6|1247463|18|NZ_CP044231|CRISPRCasFinder matches to position: 2941935-2941952, mismatch: 2, identity: 0.889

gccgcacccgaagtcgag	CRISPR spacer
gccgccaccgaagtcgag	Protospacer
*****  ***********

8. spacer 1.6|1247463|18|NZ_CP044231|CRISPRCasFinder matches to position: 1316694-1316711, mismatch: 2, identity: 0.889

gccgcacccgaagtcgag	CRISPR spacer
gccgcacacgaaggcgag	Protospacer
******* ***** ****

9. spacer 1.6|1247463|18|NZ_CP044231|CRISPRCasFinder matches to position: 1886199-1886216, mismatch: 2, identity: 0.889

gccgcacccgaagtcgag	CRISPR spacer
gccgcgcccgaaggcgag	Protospacer
*****.******* ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044231_1	1.2|1247283|24|NZ_CP044231|CRISPRCasFinder	1247283-1247306	24	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	485890-485913	3	0.875
NZ_CP044231_1	1.2|1247283|24|NZ_CP044231|CRISPRCasFinder	1247283-1247306	24	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	38133-38156	3	0.875
NZ_CP044231_1	1.2|1247283|24|NZ_CP044231|CRISPRCasFinder	1247283-1247306	24	KY092484	Streptomyces phage Raleigh, complete genome	39059-39082	3	0.875
NZ_CP044231_1	1.2|1247283|24|NZ_CP044231|CRISPRCasFinder	1247283-1247306	24	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5693647-5693670	3	0.875
NZ_CP044231_1	1.3|1247331|24|NZ_CP044231|CRISPRCasFinder	1247331-1247354	24	NZ_CP031193	Humibacter sp. BT305 plasmid unnamed1	100505-100528	3	0.875
NZ_CP044231_1	1.3|1247331|24|NZ_CP044231|CRISPRCasFinder	1247331-1247354	24	MN096355	Mycobacterium phage Purky, complete genome	6362-6385	3	0.875
NZ_CP044231_1	1.2|1247283|24|NZ_CP044231|CRISPRCasFinder	1247283-1247306	24	NZ_CP023550	Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence	76673-76696	4	0.833
NZ_CP044231_1	1.2|1247283|24|NZ_CP044231|CRISPRCasFinder	1247283-1247306	24	NZ_CP014599	Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence	179823-179846	4	0.833

1. spacer 1.2|1247283|24|NZ_CP044231|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 3, identity: 0.875

atcgaggcctcgcccgcgcccgag	CRISPR spacer
gtcgaggcctcgcccgaggccgag	Protospacer
.*************** * *****

2. spacer 1.2|1247283|24|NZ_CP044231|CRISPRCasFinder matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 3, identity: 0.875

atcgaggcctcgcccgcgcccgag	CRISPR spacer
atcgaggccttgccggcgcccgac	Protospacer
**********.*** ******** 

3. spacer 1.2|1247283|24|NZ_CP044231|CRISPRCasFinder matches to KY092484 (Streptomyces phage Raleigh, complete genome) position: , mismatch: 3, identity: 0.875

atcgaggcctcgcccgcgcccgag	CRISPR spacer
atcgaggcccggcccgcgcccgac	Protospacer
*********. ************ 

4. spacer 1.2|1247283|24|NZ_CP044231|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 3, identity: 0.875

atcgaggcctcgcccgcgcccgag	CRISPR spacer
atcgaggcctcccccgcgccctcg	Protospacer
*********** *********  *

5. spacer 1.3|1247331|24|NZ_CP044231|CRISPRCasFinder matches to NZ_CP031193 (Humibacter sp. BT305 plasmid unnamed1) position: , mismatch: 3, identity: 0.875

gtcgtacccgagcccgaggtcgta	CRISPR spacer
gcctgacccgagcccgaggtcgta	Protospacer
*.*  *******************

6. spacer 1.3|1247331|24|NZ_CP044231|CRISPRCasFinder matches to MN096355 (Mycobacterium phage Purky, complete genome) position: , mismatch: 3, identity: 0.875

gtcgtacccgagcccgaggtcgta	CRISPR spacer
gccgcacccgagcccgaggtcgtc	Protospacer
*.**.****************** 

7. spacer 1.2|1247283|24|NZ_CP044231|CRISPRCasFinder matches to NZ_CP023550 (Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.833

atcgaggcctcgcccgcgcccgag	CRISPR spacer
tccgaggcctcgcccgtgcccgaa	Protospacer
 .**************.******.

8. spacer 1.2|1247283|24|NZ_CP044231|CRISPRCasFinder matches to NZ_CP014599 (Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.833

atcgaggcctcgcccgcgcccgag	CRISPR spacer
tccgaggccttgcccgcgcccgac	Protospacer
 .********.************ 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	252301 : 259610	7	Clostridium_phage(16.67%)	tRNA,protease	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP044231|252301:259610|DBSCAN-SWA
GCTGTACGGAGAGGCTCCTGTGACACCCGAAGAATTCCCGCCGGCGGAGGATTGCGATTGCGCTCCGACGCCTCGTGAGCGTGCGCGCCTCTGGCCAGGCGTGACCCGCCGGGGCGCCCTCGGCGTCGGTGCGCTCGGCGTCGTGGGGCTCGGAGTCGTGGCCGGTCCGCACATGCCGCGGGCCTTCGCCATCGAGGGCTACCCCTCCTGGGATGACGTGCAGCGTGCCAAGAACAACGAGTCGGCGAAGAACTCCGAGATCTCTCGCATCGAGGGACTCATCGCCCAACTGCAGGCTGATGTCGCGAACAAGCAGGCGATCGCGCTGCAGAAGTCGAACGAGTTCTTCGCGGCGCAGCAGGCGTTCTTCGACGCCGCTTTCCGCGCGGACTCGCTGCAGACGCAGGCCGACGCGCAGGCCGCCGCGGCGACCGAAGCGGCCAACAAGGCCGGTCGCGTCGCGAGCCAGCTCTACCGCTCCGGCGGCGACGACACGTCGATGCAGCTGTTCTTCACGGGATCAGCGGCGGGTGCCGACGACCTGCTCGACCGGCTCGGCACCATGGACAAGCTCCTCGAGCGCAACCAGGCGGTGTACGCGGATGCGGTCACCGCGCGCAACGCCGCGGTGGTGCTCACCGATCAGGCCAAGTCGGCGCGCGACGAGCGCGACAAGCTCCAGCAGGCGGCCGAGGTCGCCATGCAGGAGTCGCAGGCGGCAGCGGACGCGGCCCAGGCGGCCCTCGACGCGCAGAACGCGCACCTGAGTGAACTGCAGGCGCAGCTCGCCGCGCTCAAGGACACCACGGCCAAGACCGTCGCCGACTACCAAGCCGGCGTCGCGGAGCAGCGGCGCCGTGAGGAAGAAGAGCGCAAGGCGCGTGAGGCAGCGGCCGCGGCCGCGGCGGCGGAAGCCGCCCGCCGTGCCGCCGAGGAGGCCGCCAAGAACAACCAGGGCGGCGGAGGCGGTGGTGGCGGCGGCGGCGGCGGAGGCGGTGGCGGTGGCGCTCCCGTCAACAACGGCTCCGGATGGGTGCGCCCGACCGCGGGCGGCGTGTCCAGCGAGTACGGGCCGCGGTACTCCCAGTGCGGACCCAGCTATTGCGCCAGCGGCACCCATTACGGCACGGACTTCGGTACCGGATGCTGGGGGAACATCTACGCCGCCGCTGCCGGCACGGTCAGCTATGCCGGCGGCAACGGCGGATACGGGAACTTCGTACGGATCGAGCACGGTGGCGGCGTCGCGACCGGGTATGCGCACATCGTGGGCGGCGGCATCCGCGTCTCGCGTGGACAGTGGGTCAACGCCGGTCAGGTCATCGCGCACGTCGGAAACACGGGGAACTCGTTCGGCTGCCACCTGCACTTCGAGGTCTACGTCAACGGCGGCACGACCAACCCGCGGCACTTCCTCGCGAACCGCGGCGTGTGGATCTAGACCGCCCCTGAAACGAGGAGGAGCGGATGCCGGTCGCCCGGCATCCGCTCCTCGTCTTTCGCAGCGTCTGAGTCAGACGGTCTTGGGGGACTCGCCCTCACCCTGCGTGCGGGTCTCGCCCTCGTGCTCCTCGAAGCGGGTGAACGCCTCGGAGACGAGACGTTCGGCCTCGGCCGCGTCGCCCCAGGCGTCGACCTTGACCCACTTGCCGGGCTCGAGGTCCTTGTAGTGCTCGAAGAAGTGGTTGATCTCGCCCTTGGTCCACTCGTCGATGTCGCCGACGTCCTGGATGTGCGCCCAGCGCGGGTCCTTGGCGAGCACCGCCACGACCTTGTCGTCGCCGCCGGCCTCGTCGCTCATCTTCAGGACGGCGACGGGGCGCACCTTGGCCATCACACCGGGGTAGATCTCCCGGTCGAGCAGGACCATGACGTCGAGCGGGTCGCCGTCCTCGCCCAGTGTGTTCTCGAAGAACCCGTAGTTGCTGGGGTATCCCATCGGGGTGAACAGGACGCGGTCGAGGAAGACCCGACCCGTGCCGTGGTCGACCTCGTACTTGACGCGGCTGCCGCGCGGGATCTCGATGACGGCGTCGTATGCGCCCATACGTGTGCTCCTTCGGAGGTTCGGTGGATTCCGCGCACCAGCCTAGCCGCGTGACCCGGGCGGCACCGGTGCCGTTCGGCCGTCGCGCGGCGCACAACTCCTGCAGATCGGGGGAGGGGGCCGCCGCGGGCGGCGGAGCCGGGCCGATTGCAGGAGTTGTGCGCCGCGCTACGGTGGGAGCATGCGTCCGAAGCTGGATCCTGCGGTCGCCGAGACCCGCCGAGCCGTACGGCCGGCCCTCGAGGGCCACACCACCGTCCTGATCGCCTTCTCGGGCGGGGCGGACTCGCTCGCGCTCGCTGCCGCGGTCGCCTTCGAGGCGGAGAAGGCCGCCGTCCGGGCGATCGCCGTCACGGTCGACCACGGGCTCCAGCCCGGTTCCGTCGCCGTCGCGGCCGAAGCGGCGGAGACGGCGCGGAGGCTCGGGCTCGAGGCCCACATCGTCGCCGTGGAGGTCGGCGACGAGGGAGGCCCGGAGGCCGCCGCGCGCGCGGCGCGCTACGAGGCCCTCCGCGACGCCGCCTACGACTACACCGCCTCCGCGGTGCTGCTCGGCCACACGCTCGACGATCAGGCGGAGACCGTGCTGCTCGGCCTCGCCCGGGGATCCGGTGCCGCGAGCCTGGCCGGGATGGCGCCCATCGTCGACGAGGACGAGATCGCCTGGACGCGTCCGCTCCTCGGCGTCCGGCGGGCCACCACCGAGGCGGCGTGCGCCGCGCAGGGTCTGACCCCCTGGCACGACCCGCACAACGAGGACCCGCAGTACGCCCGGGTCCGCACCCGCACCAGGGTGCTCCCGGTGCTGGAAGCGGAGCTCGGACCGGGCGTCGCGGAGGCGCTCGCGCGCACCGCCGAACAGCTGCGCGAGGACGCCGAGGCGTTCGCGGAGATGATCGACGAGACGATCGAGGACATCGTCGAGCCCGCCGAGGCGGGCATCGCGGTATCGGTCCCCGCGCTCGCGGCCAACCCCGCGGCGCTGCGCAACCGCATCATCCGCCACGTCGTCGCCAGCGAGTTCCACGTGTCGCTGAGCCGGACCCAGACCCTGGAGGTCGCGCGGCTCGTCACCGACTGGCGCGGCCAGGGTCCCATCGACCTGCCGGGCTGCCGCGCACACCGCGAGGGGCCCAGGATCGTCTTCACCTCGGCCACAGTTCCGGGCTCGTAGACTCAACCCATGCGCGCAGCCGATCTTGCGGACGACCTCACCACTGTCCTGGCCACGGAGGAGGAGATCCTCGCGAAGCTCGACGAGATCGCGGCACAGGTGGCCGACGACTACAAGGGCAAGGATCTCGTGCTCGTCGGCGTCCTGAAGGGCGCGATCATGGTGATGGCCGATTTCTCCCGCGCCCTGCCGCTCCTCGCCCCGATGGACTGGATGGCGGTCTCCTCCTACGGCACGGGAACCCGCTCGAGCGGTGTCGTGCAGATCCGCAAGGACCTCGACACCGACATCCACGACAAGCACGTCCTGATCGTCGAGGACATCATCGACTCGGGACTCACCCTGAGCTGGCTGCTGGAGAACTTCGCCGCGCGCGGCGCCGCCTCCGTCGAGGTGTTCGCCCTCTTCCGCAAGCCCGAGGCCGCGAAGGTCGAGGTCGACTGCCGTTACGTCGGATTCGACATTCCGAACGAGTTCGTCGTGGGCTACGGACTCGACTACGCGGAGCGCTACCGCAACCTCCGCGACGTCGCCGTCCTCGCGCCGCACGTCTACTCCTGAGCGCCCGCCCGGGCTGTACGCCGTGGGCGAATGCACAGACGGGTCATAGATGGCTCGCGCTACCCTGTAACGACCGTCCGGCAGGCGGTTCGTTGACGAAAGGGCCGGGGTCCGTCCCCGCACAATGGACTTCAAGAAGATCACCCGCAATCCTCTTTTGTATGTGCTCCTGATCGGGCTCTTCCTCATCGTGGGCTTTTCCCTGATCTCCAGCCTCGGCGGCGCCAAGCAGATCACCACGCAGCAGGGTCTGGAGCTGCTCTCCGGGAACACGGTCACGGAGGTCACCAACACGGATGGCGACCAGCGCGTCGACATGAAGCTGTCGAGCCCCTACGAGGGCGCCAACGACGTCCAGTTCTATTACGTGGGTGCCCGCGCCGACGAGGTCGTCAGCGCGGTCGACGCGGCCAACCCCTCGGACGGCTTCAACGACGTGGTGCCGCGCGCGACGTGGTTCGACGGCCTGCTCTCCCTGATGCTGCCGATCCTGCTGCTCGGCCTCATCTTCTGGTTCCTCATCTCCTCCGCCCAGGGCGGCGGCAACAAGGTCATGCAGTTCGGGAAGTCCCGCGCGAAGCTCGTCTCGAAGGAGACGCCGACCGTGACCTTCCAGGACGTCGCCGGTGCCGACGAGGCCATCGAGGAGATGCAGGAGATCAAGGACTTCCTGAAGGACCCGACCAAGTTCCAGGCCCTCGGTGCCCGCATCCCCAAGGGCGTGCTGCTGTACGGCCCTCCCGGAACCGGTAAGACGCTCCTCGCCCGCGCTGTCGCGGGTGAGGCGGGGGTCCCCTTCTACTCCATCTCCGGTTCCGACTTCGTCGAGATGTTCGTCGGCGTGGGCGCCAGCCGCGTGCGCGACCTGTTCAACCAGGCGAAGGAGAACGCTCCGGCGATCATCTTCATCGACGAGATCGACGCGGTCGGCCGTCACCGCGGCGCCGGCATGGGCGGCGGGCACGACGAGCGCGAGCAGACGCTGAACCAGATGCTCGTCGAGATGGACGGCTTCGACCCGAAGGTCAACGTCATCGTGATCGCGGCGACGAACCGCCCCGACATCCTCGACCCGGCGCTGCTGCGTCCCGGACGCTTCGACCGTCAGATCGGCGTGGATGCGCCGGATCTCAAGGGTCGCCAGAAGATCCTCGAGGTGCACGGGCGCGGCAAGCCCCTGGCCGACTCGGTCGACCTCGAGGTGGTCGCGCGGAAGACCCCCGGATTCACCGGTGCGGACCTCGCGAACGTGCTGAACGAGGCGGCGTTGCTCACGGCGCGCTCCGACGCTCAGCTCATCGACAACCGCGCGCTGGACGAGGCGATCGACCGCGTCATCGCCGGCCCCCAGCGCCGGACCCGCGTGATGAAGGACAAGGAGCGGCTCATCACCGCGTACCACGAGGGCGGCCACGCTCTCGCTGCGGCGGCGATGAACTACACCGACCCCGTCACGAAGGTCACCATCCTGCCGCGCGGCAAGGCGCTCGGGTACACGATGGTGCTGCCGCTCGACGACAAGTACTCCGTCACCCGCAACGAGCTCCAGGACCAGCTGACCTACGCCATGGGCGGACGCGTCGCCGAGGAGATCGTCTTCCACGACCCGACGACCGGTGCCTCGAACGACATCGAGAAGGCGACCAACATCGCTCGCAAGATGGTCACCGAGTACGGCATGACGACGGATGTGGGACCGGTGAAGCTCGGGGGCAGCTCGGGGGAGATGTTCCTCGGCCGCGACATGGGCCATGGCCGGGACTACTCGGAGCGCATCGCCGAGCGCGTCGACGCTCAGGTGCGTGCCCTCATCGAGCAGGCGCACAACGAGGCGTACCGGGTGCTCAACGACAACCGTGACGTCCTCGACCGGCTCGCTCTCCTCCTGCTCGAGAAGGAGACGCTCGATCACCTGGAGCTCGCCGAGATCTTCAAGGACATCCGTCGTCTGCCCGAGCGCCCGCAGTGGCTGTCCAGCTCCGAACGCCCGGTGTCTGAGGTGCCGCCGGTGCAGGTGCCGCGCCGCACCATGCCGGTCGGTGCCGTCGCGCAGGAGGAAGCGGAGTCGGCGGCCGAGGAGGCTCCTGCCCGTCGTCCTGCGGGACAGGCGCGCCCCGCGACCGCGTAGGCTCGGCCAATGGCCGTGGACCGGGAACGTGTCGCCGCACTCGTGCGCGAGATGCTCGACGCGATCGGTGAGGACCCCGACCGGCCGGGGCTGAAGCAGACGCCGCAGCGCGTGGCCGACACCTTCGCAGAGTTCTTCGCCGGTGTCGGCGAGGACCCCGCGGCCGCTCTGGCCCACACCATCTCGGTCTCCCGCGGTCCCGCCCCTGAGACGCTGCCATCCGGCGCCGTGATGGTCCGCGACATCCGATTCCGGTCGATCTGCGAGCACCATCTGCTGCCGTTCCGCGGCCGCGCGCACATCGCGTACCTCCCGGGCGAGCAGGTGGTCGGCTTCGGCGCCCTGCCGCGCGTGGTGGACGTGCTCGCCGCCCGGCCGCAGGTTCAGGAGCGGCTGGGCGAGCAGATCGCCGACACGATCGCCGGCGCGCTCGACGCCCGCGGGGTCCTCGTCATCCTGCAGGCGCAGCACGAGTGCATGACGATGCGCGGCGGCCGGCAGCCGGACGCCGATACGCTGACCATCGCCGCCCGCGGCGAGCTCTCCGAGCCCGCGGCGCGCGCCGAGATCATCGCACTCCTGACCGGAAGGACAGAATGGCCTGTCTGATCATGGGCATCGTCAACGTCACGCCCGACTCGTTCAGCGACGGCGGACGCCATGCGGATCCCGAATCCGCCGTCGCCCACGGGCTGCGCCTGCGGGAGCAGGGAGCGGCGATCCTCGACGTCGGCGGCGAATCGACCCGGCCGGGATCCGCTCGCGTCTCGGTCGAGGAGGAGCAGGAACGCGTCATCCCGGTCGTGTACGCCCTCGCCGAGCTCGGTGCGGTGGTCAGCATCGACACCATGAACGCGAGTACCGCGTCCGCCGCCATCGCGGCGGGTGCGCGCATCGTCAACGACGTGTCCGGGGGTCTCGCGGATCCCGACCTGCTGCCGGTCGTGGCGGAGTCCCGCGCCGACATCGTCCTGGGGCACTGGCGCGGTCATTCGGACCGGATGTACGCGCAGGCGGAGTACCGGGACATCACCCGCGAGGTCGTCGGTGAGCTGCGCGAGCGGTTGTCCGCCGCTGCCGCCGCGGGCATCGCGCCCTCCCGCGTGATCCTGGATCCCGGGATCGGTTTCGCCAAGCGCGGCGCCCAGAACTGGGAGCTGCTGCGCGGACTCCCGCACCTGGTCGGCGCAGGCGCTCGCGTGCTGGTCGGCACGAGCCGGAAGCGCTTCCTGGCCGACGTACTCGGGGAGGACGCGTCGGAGGAACGGCGCGACCTGGCGACGGCCGTCACGAGCGTCCTGTCCGCGCAGGCCGGCGCCTGGGCGGTGCGCGTGCACGACGTGCCGACCACGCGCGACGCGCTGCGGGTGGCCGAGGCATGGAAGAGCGGCGCGGCATGA

Protein sequences of DBSCAN-SWA_1

>NZ_CP044231|252301:259610|258806_259610_+|WP_150970719.1|DBSCAN-SWA
MACLIMGIVNVTPDSFSDGGRHADPESAVAHGLRLREQGAAILDVGGESTRPGSARVSVEEEQERVIPVVYALAELGAVVSIDTMNASTASAAIAAGARIVNDVSGGLADPDLLPVVAESRADIVLGHWRGHSDRMYAQAEYRDITREVVGELRERLSAAAAAGIAPSRVILDPGIGFAKRGAQNWELLRGLPHLVGAGARVLVGTSRKRFLADVLGEDASEERRDLATAVTSVLSAQAGAWAVRVHDVPTTRDALRVAEAWKSGAA
>NZ_CP044231|252301:259610|252301_253741_+|WP_150974620.1|DBSCAN-SWA
MYGEAPVTPEEFPPAEDCDCAPTPRERARLWPGVTRRGALGVGALGVVGLGVVAGPHMPRAFAIEGYPSWDDVQRAKNNESAKNSEISRIEGLIAQLQADVANKQAIALQKSNEFFAAQQAFFDAAFRADSLQTQADAQAAAATEAANKAGRVASQLYRSGGDDTSMQLFFTGSAAGADDLLDRLGTMDKLLERNQAVYADAVTARNAAVVLTDQAKSARDERDKLQQAAEVAMQESQAAADAAQAALDAQNAHLSELQAQLAALKDTTAKTVADYQAGVAEQRRREEEERKAREAAAAAAAAEAARRAAEEAAKNNQGGGGGGGGGGGGGGGGGAPVNNGSGWVRPTAGGVSSEYGPRYSQCGPSYCASGTHYGTDFGTGCWGNIYAAAAGTVSYAGGNGGYGNFVRIEHGGGVATGYAHIVGGGIRVSRGQWVNAGQVIAHVGNTGNSFGCHLHFEVYVNGGTTNPRHFLANRGVWI
>NZ_CP044231|252301:259610|256206_258210_+|WP_150970715.1|protease|DBSCAN-SWA
MDFKKITRNPLLYVLLIGLFLIVGFSLISSLGGAKQITTQQGLELLSGNTVTEVTNTDGDQRVDMKLSSPYEGANDVQFYYVGARADEVVSAVDAANPSDGFNDVVPRATWFDGLLSLMLPILLLGLIFWFLISSAQGGGNKVMQFGKSRAKLVSKETPTVTFQDVAGADEAIEEMQEIKDFLKDPTKFQALGARIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFNQAKENAPAIIFIDEIDAVGRHRGAGMGGGHDEREQTLNQMLVEMDGFDPKVNVIVIAATNRPDILDPALLRPGRFDRQIGVDAPDLKGRQKILEVHGRGKPLADSVDLEVVARKTPGFTGADLANVLNEAALLTARSDAQLIDNRALDEAIDRVIAGPQRRTRVMKDKERLITAYHEGGHALAAAAMNYTDPVTKVTILPRGKALGYTMVLPLDDKYSVTRNELQDQLTYAMGGRVAEEIVFHDPTTGASNDIEKATNIARKMVTEYGMTTDVGPVKLGGSSGEMFLGRDMGHGRDYSERIAERVDAQVRALIEQAHNEAYRVLNDNRDVLDRLALLLLEKETLDHLELAEIFKDIRRLPERPQWLSSSERPVSEVPPVQVPRRTMPVGAVAQEEAESAAEEAPARRPAGQARPATA
>NZ_CP044231|252301:259610|253813_254347_-|WP_150970708.1|DBSCAN-SWA
MGAYDAVIEIPRGSRVKYEVDHGTGRVFLDRVLFTPMGYPSNYGFFENTLGEDGDPLDVMVLLDREIYPGVMAKVRPVAVLKMSDEAGGDDKVVAVLAKDPRWAHIQDVGDIDEWTKGEINHFFEHYKDLEPGKWVKVDAWGDAAEAERLVSEAFTRFEEHEGETRTQGEGESPKTV
>NZ_CP044231|252301:259610|254528_255521_+|WP_150970710.1|tRNA|DBSCAN-SWA
MRPKLDPAVAETRRAVRPALEGHTTVLIAFSGGADSLALAAAVAFEAEKAAVRAIAVTVDHGLQPGSVAVAAEAAETARRLGLEAHIVAVEVGDEGGPEAAARAARYEALRDAAYDYTASAVLLGHTLDDQAETVLLGLARGSGAASLAGMAPIVDEDEIAWTRPLLGVRRATTEAACAAQGLTPWHDPHNEDPQYARVRTRTRVLPVLEAELGPGVAEALARTAEQLREDAEAFAEMIDETIEDIVEPAEAGIAVSVPALAANPAALRNRIIRHVVASEFHVSLSRTQTLEVARLVTDWRGQGPIDLPGCRAHREGPRIVFTSATVPGS
>NZ_CP044231|252301:259610|255530_256082_+|WP_150970713.1|DBSCAN-SWA
MRAADLADDLTTVLATEEEILAKLDEIAAQVADDYKGKDLVLVGVLKGAIMVMADFSRALPLLAPMDWMAVSSYGTGTRSSGVVQIRKDLDTDIHDKHVLIVEDIIDSGLTLSWLLENFAARGAASVEVFALFRKPEAAKVEVDCRYVGFDIPNEFVVGYGLDYAERYRNLRDVAVLAPHVYS
>NZ_CP044231|252301:259610|258219_258819_+|WP_150970717.1|DBSCAN-SWA
MAVDRERVAALVREMLDAIGEDPDRPGLKQTPQRVADTFAEFFAGVGEDPAAALAHTISVSRGPAPETLPSGAVMVRDIRFRSICEHHLLPFRGRAHIAYLPGEQVVGFGALPRVVDVLAARPQVQERLGEQIADTIAGALDARGVLVILQAQHECMTMRGGRQPDADTLTIAARGELSEPAARAEIIALLTGRTEWPV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150974620.1|252301_253741_+	M23 family metallopeptidase	Q8SBN9	Clostridium_phage	4.3e-10	39.5
WP_150970708.1|253813_254347_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	1.2e-34	47.1
WP_150970710.1|254528_255521_+|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_150970713.1|255530_256082_+	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	6.8e-09	28.8
WP_150970715.1|256206_258210_+|protease	ATP-dependent zinc metalloprotease FtsH	M4QMW8	Micromonas_pusilla_virus	2.6e-106	47.0
WP_150970717.1|258219_258819_+	GTP cyclohydrolase I	E7DN69	Pneumococcus_phage	9.0e-31	41.1
WP_150970719.1|258806_259610_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	3.2e-23	34.2