CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044229	Lactobacillus rhamnosus strain hsryfm 1301 plasmid pGu1301, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP044228	Lactobacillus rhamnosus strain hsryfm 1301 chromosome, complete genome	3 crisprs	DEDDh,csa3,cas14j,WYL,DinG,cas3,cas9,cas1,cas2,csn2,RT,PrimPol,Cas14u_CAS-V	3	13	9	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044228_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044228_1

158773-158887

Orphan

Consensus_repeat	Method
GCGTTATGGGCATAAGCTAGAATGTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044228_1

>merge|NZ_CP044228|1|158773-158887|CRISPRCasFinder
GCGTTATGGGCATAAGCTAGAATGTAAGTCGCCCGGGTTGCCCATTGCGACCAAGGCCCTTATGTGCAGGTTTCTGCGCCGTCAAGAGCGTTATGGGCGTAAGCTAGAATGTAAG

>NZ_CP044228|1|1|158773-158887|CRISPRCasFinder
GCGTTATGGGCATAAGCTAGAATGTAAG	TCGCCCGGGTTGCCCATTGCGACCAAGGCCCTTATGTGCAGGTTTCTGCGCCGTCAAGA
GCGTTATGGGCGTAAGCTAGAATGTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044228.1\|WP_005689178.1\|160784_160964_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044228.1\|WP_005685615.1\|160960_161173_+\|DNA-dependent-RNA-polymerase-auxiliary-subunit-epsilon-family-protein	unknown	unknown	gnl\|CDD\|184224
NZ_CP044228.1\|WP_005685623.1\|155051_156029_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP044228.1\|WP_005710125.1\|146256_147426_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843
NZ_CP044228.1\|WP_150861183.1\|150836_151727_-\|lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|223117
NZ_CP044228.1\|WP_005710103.1\|162878_163100_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044228.1\|WP_005710111.1\|157404_158220_-\|ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP044228.1\|WP_005713827.1\|165413_167879_-\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
NZ_CP044228.1\|WP_005689192.1\|151972_153376_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
NZ_CP044228.1\|WP_005713830.1\|160013_160466_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044228.1\|WP_005710099.1\|164190_165408_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|226925
NZ_CP044228.1\|WP_005710101.1\|163111_164062_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP044228.1\|WP_005685627.1\|150565_150847_-\|UPF0223-family-protein	unknown	unknown	gnl\|CDD\|377494
NZ_CP044228.1\|WP_005710107.1\|159691_159991_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044228.1\|WP_005685628.1\|149768_150563_-\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238815
NZ_CP044228.1\|WP_005710113.1\|156031_157144_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NZ_CP044228.1\|WP_005710115.1\|153378_155034_-\|dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|237000
NZ_CP044228.1\|WP_005685614.1\|161177_162860_+\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NZ_CP044228.1\|WP_005685629.1\|147671_149516_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP044228.1\|WP_005685619.1\|159095_159650_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668

Protein	Function_ID	Function_description	E-value
NZ_CP044228.1\|WP_005685615.1\|160960_161173_+\|DNA-dependent-RNA-polymerase-auxiliary-subunit-epsilon-family-protein	gnl\|CDD\|184224	PRK13667, PRK13667, hypothetical protein; Provisional.	8.4006e-34
NZ_CP044228.1\|WP_005685623.1\|155051_156029_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
NZ_CP044228.1\|WP_005710125.1\|146256_147426_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	1.01119e-97
NZ_CP044228.1\|WP_150861183.1\|150836_151727_-\|lactate-dehydrogenase	gnl\|CDD\|223117	COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion].	2.19856e-16
NZ_CP044228.1\|WP_005710111.1\|157404_158220_-\|ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	2.14335e-07
NZ_CP044228.1\|WP_005713827.1\|165413_167879_-\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP044228.1\|WP_005689192.1\|151972_153376_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP044228.1\|WP_005710099.1\|164190_165408_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|226925	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only].	6.40458e-50
NZ_CP044228.1\|WP_005710101.1\|163111_164062_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.21771e-49
NZ_CP044228.1\|WP_005685627.1\|150565_150847_-\|UPF0223-family-protein	gnl\|CDD\|377494	pfam05256, UPF0223, Uncharacterized protein family (UPF0223). This family of proteins is functionally uncharacterized.	9.77603e-41
NZ_CP044228.1\|WP_005685628.1\|149768_150563_-\|inositol-monophosphatase-family-protein	gnl\|CDD\|238815	cd01637, IMPase_like, Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.	5.0852e-67
NZ_CP044228.1\|WP_005710113.1\|156031_157144_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	0
NZ_CP044228.1\|WP_005710115.1\|153378_155034_-\|dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0
NZ_CP044228.1\|WP_005685614.1\|161177_162860_+\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP044228.1\|WP_005685629.1\|147671_149516_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP044228.1\|WP_005685619.1\|159095_159650_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.93241e-64

>NZ_CP044228.1|WP_005710111.1|157404_158220_-|ATPase
MLMMVSSGLTRYEAQKAQKTTTIRQETISKTNLFLPLLMTLAGVSSLILVMSHSWLLTAIVAILASLTVMVIAYLAKAITRHQGQPQQPVLVVRDGLVRQVRAQDLVVGDVLMLTAGEKLPVDVALAPGASVTLPRDLAGLLILLNRRVPTGVGIAGAVMATDTQATVTAVLNDGLLDHGLKQLAGQSVTTTPTSLVTSAVAGLKLVLQQICRIFRLAVSVVSLEMLKNKQIDRDEQIRVEIAFAHHATLVGAMKHHSKTSDFRHNQDPVS
>NZ_CP044228.1|WP_005710113.1|156031_157144_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MAKQHAAVDFKQLLDNQDADFKPTIQILDEVGKVVNPDIMPDLSDDQLVDLMSKMVWQRVLDQRATALNRQGRLGFYAPSAGEEASMIGSHAAMKSSDWLLPAYRDLPQLIQHGLPLDKAFLWSRGHVAGNEYPEDFHALPPQIIIGAQYVQTAGVALGLKKNGSDEVAFTYTGDGGTSQGDFYEGVNFAGHFKAPALFIVQDNGFAISVPRASQTAAKTLAQKAVAAGVPGVQVDGMDALAVYEVTKEARAWAAAGNGPVLIETLTYRYGPHTLSGDDPTRYRSKETDELWQKRDPLIRMRNYLTDKGLWRKDKEDALIEKVKDEIKDAINKADKAPQQTVSRFLKDTYEVAPQNVAEQLAEFQGKESK
>NZ_CP044228.1|WP_005685623.1|155051_156029_-|alpha-ketoacid-dehydrogenase-subunit-beta
MAQKTMIQAITDALDVELANDPKTLVFGEDVGKNGGVFRATDGLQAKHGEDRVFDTPLAESGISGLAIGLALTGWRPIPEIQFFGFVFETMDSIGGQMSRMRYRMGGTRSMPITIRAPFGGGVHTPEMHSDNFEGLIAQFPGMRVVIPSNPYDAKGLLISSIRSNDPVLFLEHMKLYRSFRQDVPDGTYTVPLDKAAVTREGTDVSIITYGAMVREALKAADNLAKDGINAEIVDLRTIAPLDVDTIIASVKKTHKAVVVQEAQRMAGVAANVISEISERAILSLEAPIGRVAAPDTPFPFGQAENIWLPNAKDIEAKVRETVNF
>NZ_CP044228.1|WP_005710115.1|153378_155034_-|dihydrolipoyllysine-residue-acetyltransferase
MAFEFKLPELGEGLAEGEIVKWDVKPGDEIKEDDTLLEVQSDKSVEEIPSPVSGKILKILVPEGETASVGDLLVEIDDGSGPATQPAAAQPAAAPAAATDASAGNAPAAKSVYQFKLPELGEGLAEGEIVKWAVKPGDQIKEDDTLLEVQSDKSVEEIPSPVAGTVVKILVPEGETATVGEALVDIDAPGHNDTPVASGTAAAPQANTDTAAPAAAPAAAGSVPAITDPNREILAMPSVRQYAREQGIDISQVPATGKHGRITKADIDAFKAGAPAAAPAQPAATSAPKAAQPAPAATPAAPKPQPVAPYVSNSSEAELETREKMTPTRKAIAKAMLASKQRSPHVTSFDEVEVSKLMAHRKKYKQYAADKGIKLTFLPYIVKALVTVLREYPEFNASIDDTTDEIVYKHYFNIGIATNTDHGLYVPVIKNADAKSMFEIAKEISDNAQKAYDSKLKPDEMRGGSMTISNVGSIGGGWFTPVINQPEVAILGVGKIAKEPYVNADNEIVVGNLLKLSLSYDHRLIDGALAQTALNLMDKLLADPDLLLMEG
>NZ_CP044228.1|WP_005689192.1|151972_153376_-|dihydrolipoyl-dehydrogenase
MVVGDFAIDLDTVVIGSGPGGYVAAIRAAEMGQKVTVIENTFIGGVCLNVGCIPSKALINAGHRYQDALEASTFGINAKGADLDFKKTQDWKQNKVVHTLTSGVAMLLKKHKIETIMGTAFLKDDHSLRVMQKDSAQTYTFKNLIIATGSRPIEIKGFKFGKRILDSTGGLNLPEVPKEFVVIGGGYIGSELASAYANLGAHVTILEGTSSILPNFEKDMVQLVLNSFKKRGVTVITNAMAKEAEDTGNGVKVTYTADGKEQTIAADYVMVTVGRRPNTDDLGLDIVGIETTDRGLIKVDAQGRTNKPNIYAIGDIVPGAALAHKASYEGKIAAEAISGKASAVDYKAMPAVCFTDPELATTGMTLAEAKDKGIKAKASKFPFAANGRALSLAQTEGFVRLVTDENGTVIGGQVAGAGASDLISELTVAVEGGLNAEDLALTIHPHPTLSETIMDDAEVALGLPINI
>NZ_CP044228.1|WP_150861183.1|150836_151727_-|lactate-dehydrogenase
MQRVVVHGASTGTQGLLQMLIMSLLDLQVGCYEPDETLVDVAGLTALSQICRNTFVKVTPKVLKAADVLILTDTGTPADEGFVTTNITAIRKVLNSAMAAGFKGRIIVAMTHDELFTYFAQRFSGLNKRQVVGLGTFGATWQFEQFLAERLAVPAAQVTAYVVGTSQTPVLVWSRAYVGATPVLRLLDDQTIFSEAVKAVQTFLASTLTVMLGKLVEPILAAFAGDGVIGTFTHLRDADDGTGQISSSPVLLDERGVVTLAMVAGSDDEEAALSQAIQAAQTQIEAIEQGANKNES
>NZ_CP044228.1|WP_005685627.1|150565_150847_-|UPF0223-family-protein
MKANYHYPLDLDWTTAEKIKVTTFYALVEDAYEHGVDRDNLLAAYKGFKQVVPDKGTERQLGREFETLSGYSMYTVVQMARQGVSQKIRVRVS
>NZ_CP044228.1|WP_005685628.1|149768_150563_-|inositol-monophosphatase-family-protein
MTQDPEKIRETLIGWFAASRKRILTAMAQPLDVAQKSNRNDLVTNVDKANQQFLIEHIKTDFPTARIIGEEGHGHDDTDLNGLVFFVDPIDGTMNFVKQQAHFAVMIGVYRDGQPIVGAIMDVMRNEVLSGGPNLPVTFAGRQLKPLPDLPLKDGLLGVAGPMAIKNRLHLGDVALASSGARMSGSAGMEFIEVALGRQVGYVSYLQPWDVAAGMAITQGLGVEFSREDGSAINLSQPGVVVAATPQAHQTILAMMAGKSEQAH
>NZ_CP044228.1|WP_005685629.1|147671_149516_-|translational-GTPase-TypA
MKTRDDIRNIAIIAHVDHGKTTLVNEMLKQSDTLDQHIQLQDRAMDTNAIEKERGITILSKNTAVKYGDTTINILDTPGHADFGGEVERVMKMVDGVLLVVDAFEGPMPQTRFVLKKALEQHLTPIVVINKVDRPGARPEEVVDEVLELFIELGADDAQLEFPVVYASAVNGTSSMDSDLSTQKHTMNPLFETIIKTIPAPIDNSDEPLQFQVAMLDYNDYVGRIGIGRIFRGKIKIGDNVTVMKLDGSQKNFRVTKLFGFFGLTRTEINSAKAGDLIAVSGMDDIFVGETVTAADTPEALPILRIDEPTLQMMFVANDSPFAGREGKNVTARKLEERLKAQLQTDVSLRVDDTDQAGAWMVSGRGELHLSILVEEMRREGFELQLGRPEVIYRDIDGVTMEPFETVQIDTPEQYTGTVIDAMSQRKGEMQNMENEGNGQTRLTFLAPSRGLIGYSTEFLSSTGGYGIMNHTFEKYAPVIKNWEPGRTQGALVSINAGTATTYSLQSVEDRGQLFINAGTEVYEGMIVGQNSRENDIAVNVTKGKNLTNTRAAGKDHAAAIKTPKKMTLEESIEFLNDDEYCEVTPENIRLRKKILNTGERQKAAKRKKIAASK
>NZ_CP044228.1|WP_005710125.1|146256_147426_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MKKIRHVDYFILVPYLILCAIGIVMVYSASAYWVQRQYGAAETKYLVQQILFVILGIGTVFFFYKMSLKILRNRWVLFILMSTLLVLLVYLILHGRAVNGASAWITIGGFRLQPSEFAKMILIFYLAHMLSSRENSFQQENFRLHQMWQPLFMAGVIMFLVFIEPDTGGFAILFLITLVVVMSSGIPMRYGLLWVLGLIATGVLGYYIVSHYHFAGLENNYAYQRLVAAIHPFEKANAAGNQVVNSLYAINHGGWFGVGLGMSSQKLGYLPEPYTDFILAVIAEELGLVGTVVILSLLFFLVMRFYLIGVRSKNTYHTLIAYGIATMMLVQTIFNVGAVAGVIPVTGVTLPFISYGGSSMIVLSMAVGIMLNISYHSERTQRKVEKTHA
>NZ_CP044228.1|WP_005685619.1|159095_159650_+|peptide-deformylase
MYLMKDITRDGAKVLRERAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAAPQVGQSKAMAAVLVPGDNDEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVVRADRITIAYQNEAGEHKKVRLKNYPAIVCQHEIDHLNGVLFYDHINKEHPFSIDPEAVLIH
>NZ_CP044228.1|WP_005710107.1|159691_159991_-|hypothetical-protein
MNDDQDLIMRQIKSFAQGLGAALGKNQRKSNQPVIVFHEAEVSLASYQKTLMTVIREKGLIAAQAQLKKWQQTRLSAHQYQRLNAWIQEQQLINRNPDK
>NZ_CP044228.1|WP_005713830.1|160013_160466_-|hypothetical-protein
MVWLLIVVLLVVLATLWLFRKRWRRNKAIQILLYHSQRLTDQAMAEALQQLGISTDKPMTSKPIADIWGHGVMAFSYQISSSLGKVTQPALEQALRQAARQLDIASSDPALPPFVLTDFFELEGELHIDVAFITNEATIEYVRDVNRVSS
>NZ_CP044228.1|WP_005689178.1|160784_160964_+|hypothetical-protein
MDHGNGVMLPFCGSSDETSAIPARSPMLFVVRHLDGMSFFSEAVLLHFLSFCTTEGVQT
>NZ_CP044228.1|WP_005685615.1|160960_161173_+|DNA-dependent-RNA-polymerase-auxiliary-subunit-epsilon-family-protein
MIYKVLYQKDKIQNPRRETTQTLYLEAPSAVEARALVEANTPYNIEFIQELSGNFLEYEEKSANFKLTTF
>NZ_CP044228.1|WP_005685614.1|161177_162860_+|ribonuclease-J
MKLNIKNNETAVFAVGGLGEIGKNMYGVQFQDEIIVIDAGIKFPEDDLLGIDYVISDYSYLVQNKDKIKALVITHGHEDHIGGIPYFLQQVPNVPIYAGPLAAALIRGKLEEHGLLRTTKLTEINEDTVLKFKKLSVEFFRTTHSIPDTLGIAVHTPQGIVIQTGDFKFDLTPVGDQPSPNFQKMCRFAEEGVLVLMSDSTNAEIPTFTKSERFVGKSIRHIFDRIDGRIIFATFASNISRIAQAADAAMAHGRKIAVFGRSMETAMVNGRELGYLNIPDDVLVDAHQLNSLPADKVMILCTGSQGEPMAALSRIANGTHRQISIQPGDTVIFSSNPIPGNTVSVNHVINQLSEAGAEVIHGKVNNVHTSGHGGQEDQKLMLRLIKPKFFMACHGEYRMQKIHCELAQQCGVPEKNCFIMENGDVLALTEKSARIAGHFPAGDVYIDGSGVGDIGNAVIRDRRMLSEEGLVVVVATINMQKQAVLAGPDLLSRGFIYMRESGELINQAQRRVYRTIKSTFSNNEKVTEATLKDAITSSLQEFLFDKTERHPVILPMLILL
>NZ_CP044228.1|WP_005710103.1|162878_163100_+|hypothetical-protein
MFILTPHLPYKLCGVFLQFLTCHLNINLFEKPPDRYAGFAEKLSLLLLANMLFKYDGNIVFLGFFGIIDCVSN
>NZ_CP044228.1|WP_005710101.1|163111_164062_+|diacylglycerol-kinase-family-lipid-kinase
MAAVFYYLIYNPAAGGGAAIPIFKQVKAVLDQRQLPYAIKTSRYPGHTNIIAKQIGNFNTRDHAILLVIGGDGTLNQAINGLIDTRQHDLPVAYVPAGSGNDFARGIGMSEDPMHALEQVLQATKPVAIDIGRYHERTRDETGYFVNNIGIGFDAAVVSAANHSDSKQLLNKFHLGKLTYLFHVIGSLLTRRPFPVAVYEKGVRHFFHRAYICTTTNIPYFGGGIQIYKPADPTDGHLDLIIVEWFNIVSWAFAMIQLMRGKAPTSRAVHLFHAKKLTVETSSLEFGQMDGEEMGTRPFEIDFSVASQQFWIDRSI
>NZ_CP044228.1|WP_005710099.1|164190_165408_-|GNAT-family-N-acetyltransferase
MEDNIRKSLQIKSVTPKDLEQFNDLLTYVFQVTQKDLEQSGYEEGELERAKRPVLEKSDVLGWFHQNELVSSLAIYPCTVNIHGTLYQMAGLTGVGTYPEYAGHGLMHDLVKLGLEHMRQHKQWISYLYPYSIPFYRKKGWEIMSDHLTFDVKDTQLPKQVEVPGHVERLEIDDPDVIETYNRFAMKNHGAMIRNQLNWDEYWRWENEEERTAGVYYDANDEPQGYVLYWIADEVFHVKEMIYTNQEARVGLWNFISAHFSMVTHVKGKIYKNEPLHFLLDDGDIYQTIKPYYMARIVDVKAFLAQYPFAAETTEPFHFVVSDPLAPWNNGTFGVYWDEHQQVKITNRPVGEAITTDIQTLTTMLMSYRRPSYLAQIERLSASKHAIKLLENAVPMEEPYFSDYF
>NZ_CP044228.1|WP_005713827.1|165413_167879_-|ATP-dependent-RecD-like-DNA-helicase
MDRHEDSVTGRVKSIFFQNPTNFFKILLIDITATTITWTEPDIVVTGTFGDIKEDETYTFTGHVVDHPKYGQQFQADNYHVDRPTNKTGLINYLSSDKFPGIGPKTAEKIIDKLGVDAIDRILDDPESLKGLGISAAKQKMLVTNLKTNQGMERVIIGLNDYGFTSNMAGRIYQQYQNDALEVIKQNPYQLINDIDGIGFTRADQIAAKLAIAPDSQLRLGGAVMDTLQRLTDGEGDTFVDLKTLVTQTLDLLERARQVAVNPEAVGQAIVTLAKDNALVAEGKRIFPKRLYDSEWQIARQLKGLADAGRAAKQPALAEIKQTLATVQEETGIAYDEVQKKAIITALQSPIFLLTGGPGTGKTTVTDGIVRTYAQLHDLSLDRHEYTPDDPFPIMLAAPTGRAAKRISETTQLPASTIHRLLGLGVDTQEFAPNDLPDGLLIIDEMSMVDTYLFRTLLTALHPGMQIVLVGDKDQLPSVGPGQVFADLLRSQALPHAALTHIHRQDADSSIIPLAHAVNAGRLPDDFTRPQVDRSFLPCSPSQVPEVVGQVVQRAAVKQFSIADIQVLAPMYRGTAGIDRLNPLLQDILNPKRSARTKIVHFGETEYRIGDKILQLVNDPNQNVFNGEIGQIVGITLAKEAASKTDELTIDFDGNEITYKRSDFSKITLAYATSIHKAQGSEFPMVILPLTMQSRRMLRRNLLYTAITRAKSFLILVGELAAFETAVGEIAVNRHTGLVQRLQQAFGMTVSQPDVEKSTPATEVSQNAGQIDTNPSDLDNGISTDESNNYQLTPALVASQRIDPMIGMNGVTPQMFMTKEK

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Crispr_ID: NZ_CP044228_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044228_2

285216-285323

Orphan

Consensus_repeat	Method
CGCGTTATGGGCGTAAGCTGGCACATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044228_2

>merge|NZ_CP044228|2|285216-285323|CRISPRCasFinder
CGCGTTATGGGCGTAAGCTGGCACATTGGAAGTTGGTGTGTACGACCAAGGTCCTCACACGCAGGTCCCTGCGCCAGTGAACGCGTTATGGGCATAAGCTGGCACATT

>NZ_CP044228|2|2|285216-285323|CRISPRCasFinder
CGCGTTATGGGCGTAAGCTGGCACATT	GGAAGTTGGTGTGTACGACCAAGGTCCTCACACGCAGGTCCCTGCGCCAGTGAA
CGCGTTATGGGCATAAGCTGGCACATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044228.1\|WP_005684900.1\|281107_281278_-\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|378713
NZ_CP044228.1\|WP_064460605.1\|292422_293445_-\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
NZ_CP044228.1\|WP_005707670.1\|280793_281099_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|237697
NZ_CP044228.1\|WP_064460602.1\|278941_279241_-\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|133457
NZ_CP044228.1\|WP_064460604.1\|287909_288455_-\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|365949
NZ_CP044228.1\|WP_064460606.1\|293544_294375_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP044228.1\|WP_150861189.1\|283049_283481_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_CP044228.1\|WP_005713769.1\|286356_287886_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_CP044228.1\|WP_005684901.1\|281290_282280_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237564
NZ_CP044228.1\|WP_032964468.1\|285421_286345_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_CP044228.1\|WP_005684912.1\|290880_292113_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_CP044228.1\|WP_064460603.1\|279252_280458_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP044228.1\|WP_005689008.1\|282344_282581_-\|DUF1146-domain-containing-protein	unknown	unknown	gnl\|CDD\|227173
NZ_CP044228.1\|WP_005689007.1\|283495_284962_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP044228.1\|WP_005684908.1\|288441_288930_-\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NZ_CP044228.1\|WP_032964475.1\|289200_289911_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP044228.1\|WP_005684898.1\|280579_280801_-\|DUF2969-domain-containing-protein	unknown	unknown	gnl\|CDD\|371411
NZ_CP044228.1\|WP_005684911.1\|290210_290840_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP044228.1\|WP_064460601.1\|277688_278813_+\|ArgE/DapE-family-deacylase	unknown	unknown	gnl\|CDD\|181490
NZ_CP044228.1\|WP_005684909.1\|288965_289178_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|349425

Protein	Function_ID	Function_description	E-value
NZ_CP044228.1\|WP_005684900.1\|281107_281278_-\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|378713	pfam11772, EpuA, DNA-directed RNA polymerase subunit beta. This short 60-residue long bacterial family is the beta subunit of the DNA-directed RNA polymerase, likely to be EC:2.7.7.6. It is membrane-bound and is referred to by the name EpuA.	5.00157e-07
NZ_CP044228.1\|WP_064460605.1\|292422_293445_-\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	4.75962e-83
NZ_CP044228.1\|WP_005707670.1\|280793_281099_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|237697	PRK14379, PRK14379, membrane protein insertion efficiency factor YidD.	5.61861e-47
NZ_CP044228.1\|WP_064460602.1\|278941_279241_-\|glycine-cleavage-system-protein-H	gnl\|CDD\|133457	cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.	8.64751e-31
NZ_CP044228.1\|WP_064460604.1\|287909_288455_-\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	2.1446e-56
NZ_CP044228.1\|WP_064460606.1\|293544_294375_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	8.28617e-102
NZ_CP044228.1\|WP_150861189.1\|283049_283481_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	2.12157e-51
NZ_CP044228.1\|WP_005713769.1\|286356_287886_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_CP044228.1\|WP_005684901.1\|281290_282280_-\|rod-shape-determining-protein	gnl\|CDD\|237564	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional.	0
NZ_CP044228.1\|WP_032964468.1\|285421_286345_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	2.43472e-136
NZ_CP044228.1\|WP_005684912.1\|290880_292113_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP044228.1\|WP_064460603.1\|279252_280458_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	2.47288e-96
NZ_CP044228.1\|WP_005689008.1\|282344_282581_-\|DUF1146-domain-containing-protein	gnl\|CDD\|227173	COG4836, COG4836, Predicted membrane protein [Function unknown].	1.07653e-14
NZ_CP044228.1\|WP_005689007.1\|283495_284962_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP044228.1\|WP_005684908.1\|288441_288930_-\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	2.19758e-41
NZ_CP044228.1\|WP_032964475.1\|289200_289911_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	1.84347e-60
NZ_CP044228.1\|WP_005684898.1\|280579_280801_-\|DUF2969-domain-containing-protein	gnl\|CDD\|371411	pfam11184, DUF2969, Protein of unknown function (DUF2969). This family of proteins with unknown function appears to be restricted to Lactobacillales.	2.86889e-19
NZ_CP044228.1\|WP_005684911.1\|290210_290840_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	2.79e-137
NZ_CP044228.1\|WP_064460601.1\|277688_278813_+\|ArgE/DapE-family-deacylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	4.41706e-160
NZ_CP044228.1\|WP_005684909.1\|288965_289178_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|349425	cd18185, ATP-synt_Fo_c_ATPE, F-type proton-translocating ATPase subunit c (ATPE) and similar proteins. This family includes subunit c of F-ATP synthase (also called ATP synthase F(o) sector subunit c, F-type ATPase subunit c, or F-ATPase subunit c) and similar proteins. It is a proton-translocating subunit of the ATP synthase encoded by gene atpE.	2.30794e-19

>NZ_CP044228.1|WP_005689007.1|283495_284962_-|F0F1-ATP-synthase-subunit-beta
MPNSTGKIAQVIGPVVDVAFPINDNLPEINNALTITRKDGSQLVLEVALELGDGVMRTIAMDSTDGLQRGMAVEDTGGPISVPVGKDTLGRVFNVLGDPIDDGEAFGPDHRRDSIHRDAPKFEDLNTSSEILETGIKVIDLLEPYLRGGKVGLFGGAGVGKTVLIQELIHNIAEEHGGISVFTGVGERTREGNDLYFEMKESGVLENTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLERRLTEQGIYPAVDPLESSSSALTPEIVGEEHYKVATEVQQVLQRYRELQDIISILGMDELSDEEKVIVARARRVQFFLSQNFNVAERFTGQPGSYVPVEETVKGFKQILEGKYDDYPEDAFRSVGRIEEVVEKAKKMGFAPDDQDTDADEKPAAQAAAN
>NZ_CP044228.1|WP_150861189.1|283049_283481_-|F0F1-ATP-synthase-subunit-epsilon
MAETSNVLRVNIVTPEGLVYDHHAKMLVVHSVAGELGIMANHEPIVTPLEIGEVDVQRVDSSDHNDSIAVNGGFMEVSDNVASIVADSAERERDIDLSRAQAARDRAKKRIAQAKDENNQDDLRRAQVALRRAINRINVKTSH
>NZ_CP044228.1|WP_005689008.1|282344_282581_-|DUF1146-domain-containing-protein
MFQEIGLNAAITLVSHFVFIMLAFRALNALRFEQFIKANHVREAQVLLLFMAVGLGYLVSSFFLSLVQAALNLPKLFL
>NZ_CP044228.1|WP_005684901.1|281290_282280_-|rod-shape-determining-protein
MAKDIGIDLGTANVLINVKGKGIVLNEPSVVAIDTHTGKVLAVGTEAYKMVGRTPGNIRSIRPLKDGVIADFDITEAMLEYFINKLNVKGVFSKPNILICAPTNITDIEQKAIIQAAEKSGGRHVYLEFEPKVAAVGAGLDIFQPQGNMVIDIGGGTSDIAVLSLGEIVTSRSLRLAGDKMDASIAAYVKNKHKLIIGEHTAEQIKIKIGAVYDADPKETIEVRGRDIATGLPREVSVTSAEVSDALHETMMAIIDGAKGVLEKTPPELSADIIDRGIMLTGGGALLKGISQLFADELKVPVLLADDPLDAVALGTGVLLDNIEHHRQY
>NZ_CP044228.1|WP_005684900.1|281107_281278_-|DNA-directed-RNA-polymerase-subunit-beta
MDSQYPKRVFHHVKIWLIIALIALILGLLIGFGMGGDNPFKVFLPSTWIHFFNFLR
>NZ_CP044228.1|WP_005707670.1|280793_281099_-|membrane-protein-insertion-efficiency-factor-YidD
MKQILTWLVRGYQRFISPLFPPSCRYYPTCSTYMIQALQRHGAVKGLLMGIARILRCNPFVKGGLDPVPAYFTLRRNPHPENDLDLSDIQNLNRKLGGHHG
>NZ_CP044228.1|WP_005684898.1|280579_280801_-|DUF2969-domain-containing-protein
MAKEKNIKVAQMDETRNGHTVSVLRIGDQEIGFIEPDGTRFAAYVAGSNKPNRFKNIDDAVNALIAEYHLHQG
>NZ_CP044228.1|WP_064460603.1|279252_280458_-|rod-shape-determining-protein-RodA
MESHEIKSNSEGDRIDYGIILSVMLLALIGLVSIYLATAHDTTTLQNPVRATVMQAAWYVIGGVGIFFVMRFDAEQLWRIAPYLYGIGIFLMIAVLIFYDKTTAINTGAKSWFALGPVSFQPSEIMKPAYILMLSRVVTQHNAAFSHTIQHDWQLIGRMVLWTLPIAVLMKLQNDFGTTLVFLAIFAGVTLVAGINWRILLPIALIGAAIGTLAILLVTQSWGRSFLGSIGFKTYQFARIDSWLNPSGSTSGDSYQLWQSMKAIGSGQLTGKGAFHIVVAVPVRESDMIFSVIGEAFGFIGAAVLILLYFMLIYQMIRVTFDTKNEFYAYISTGVIMMILFHVFENIGMNIGLLPLTGIPLPFISQGGSFLLANMLSVGMVLSMRYHHTSYMFSRDTEDFE
>NZ_CP044228.1|WP_064460602.1|278941_279241_-|glycine-cleavage-system-protein-H
MATTYFWQDELAAGQVRLGLTQEAQEALGKIKFVDLPEIGTSLTVGKPFLSVEAEKAVLDLEAPLAGTVVDVHHELSDKPALLDETDHNDNWVVTVSTK
>NZ_CP044228.1|WP_064460601.1|277688_278813_+|ArgE/DapE-family-deacylase
MTDPIAFLQKLIQIDSANGNELAVARVLQAELEAADIPTKLIPYKDDRVNLVAQLNHGDRVLGFTGHEDVVSPGDENAWTYPPFSGKIVNNTMYGRGTDDMKSGLAAMTLALIHLKQSGFAHPLRFMATVGEEFGAMGARQLTEQGYADDLAGLVVGEPTNKLLKYAHGGTVNYEIDSEGVSVHSSRPEKGVNAIEGLVAFATREPHAFDQAPDDPDLGPFRHSITVIKGGDQVNTIPAHAYLRGNLRPTPAANIELVVGLLEKLVDQANKATTANLTLNVLHRFLPVHSDKNGHLVTTANEAIAAVTGKPAELAVAFGGTDASEFIRSDNQFDVIVYGPGDNHFSHQIDEHVDLDSYTTAIKTYEEIAKRFFA
>NZ_CP044228.1|WP_032964468.1|285421_286345_-|F0F1-ATP-synthase-subunit-gamma
MAESLMDIKRKIASTKKTGQITQAMQMVSGAKLSQIEKRAKEYQIYSDKVRQIVTHLAAGQLLELATAANDDTETDKNQVISVASLLQKRPVKKTGYLVITSDRGLVGSYNSTVLKAMMQMIKDDHESPDDYVMMAIGGVGADFFKARGMNLAYEYRGVSDIPTFNEVREIVKTAVTMYDNGVFDELYVCYNHHVNTLTSAFRAEKMLPISDLDVSEVEDTNVEYLVEPDLDAVLDAVLPQYAESLIFGAIMDAKTAEHAASTTAMRSATDNANDLISHLSTQYNRARQAAITTEITEIVGGAAALE
>NZ_CP044228.1|WP_005713769.1|286356_287886_-|F0F1-ATP-synthase-subunit-alpha
MSIKTEEISSLIKKQLEGYQDDLAAEEVGTVTYIGDGIARATGLENAMANELLQFSNGSYGMALNLETNDVGIIILGDFDEIREGDQVKRTGRIMEVPVGEAMIGRVVNSLGQPVDGLGAIKTDKTRPIEFKAPGVMQRQSVSEPLQTGLKAIDALVPIGRGQRELIIGDRKTGKTSIAIDTILNQKDQNMICVYVAIGQKDSTVRAQVETLKKYGAMDYTIVLTAGPSEPAPMLYIAPYAGAAMGEEFMYNGKHVLIVYDDLSKQATSYRELSLLLRRPPGREAYPGDIFYTHSRLLERAAKLSDKLGGGSMTALPVIETQAGDISAYIPTNVISITDGQIFLQSDLFYAGTRPAIDAGASVSRVGGDAQVKAMKKVAGTLRLDLASFRELEAFTQFGSDLDAATQAKLNRGRRTVEVLKQPVHKPLPVEKQVLILYALTHGFLDPIPIEDIGRFQDEMFDFFDSNAADLLKQIRDTGNLPDTDKLDAQIKAFAGGFQTSKQLAAAKG
>NZ_CP044228.1|WP_064460604.1|287909_288455_-|F0F1-ATP-synthase-subunit-delta
MAVTNQMVAPRYAKALLEAAHDQNQVETVHEELQALASVFKENPTILTIFDNARISAADKANLLTTLTKDASPLVANLLKLTQQYGRFGALPAIITAFNRVYDDEAGIIAATVTTAVALSADQADALRSSIAARFGMKSTQLKQIVDPSVIGGVRIQARGSVIDGTVKHRFEKMKAALLAD
>NZ_CP044228.1|WP_005684908.1|288441_288930_-|F0F1-ATP-synthase-subunit-B
MSLGDTLFTLVTFLVLMIAVGKVAWKPVSKMMAERQQKISGDLDYAEKSRKDAEALAAKRREALQHAQADAVKIVNQAKENGEKQRQSLVDAANTEVATLKKNAQADIDQARKDALASAKNDVADLSLTIAQKLIGKELNADDQKDLIDDYIKRLGDANGSH
>NZ_CP044228.1|WP_005684909.1|288965_289178_-|F0F1-ATP-synthase-subunit-C
MQFIAASIAAGIAALGASIGNGMVISKTLEGMARQPEMAGTLRGTMFIGVGLIEAVPIISVVIAFMLMLR
>NZ_CP044228.1|WP_032964475.1|289200_289911_-|F0F1-ATP-synthase-subunit-A
MNEQYPSIKLFGLNFNLTNDIGVLVSAVLVFVLVFWLSRNLQMRPGGKQNVLEWIMDFTNGIVKSAMPGSEGYTFNLLAFTLFLFIFISNQIGLFIELDIGKDTWFRSPTASPVITMTLALMVLLLSHYFGVFFKGFKGYLKGYASPVAILLPINLLEEFTNFITLSLRLYGNIFAGEVLVLLIRQLAFSGGAFSFVSGFLLEIVWQGFSVFIGSIQAYVFVTLGMVYTSHKVVSE
>NZ_CP044228.1|WP_005684911.1|290210_290840_-|uracil-phosphoribosyltransferase
MGKFTVLNHPLIQHKLTLIRDKHAGTKEFREIANEIAELMVYEITRDLPLESIEIETPMGKTVQKQLAGKKLAVIPILRAGLGMVDGVLRLIPAAKVGHIGMYRDEKTLKPHEYFVKMPPDIDQRDLIIVDPMLATGGSANMAIEALKKRGATSMRLVVLVAAPEGVKAVQAANPDVDIYAAALDDHLNENGYIVPGLGDAGDRLFGTK
>NZ_CP044228.1|WP_005684912.1|290880_292113_-|serine-hydroxymethyltransferase
MDLMAHDPEVFRAIHEEEARQEHNIELIASENIVSPAVRAAQGSVLTNKYSEGYPGHRYYGGNQYIDVVENLAIERAKKLFGAEFANVQPHSGSQANMAAYRAFLEDGDKVLAMDLTDGGHLTHGSPVSFSGQEYHFYHYGLDPKTERLDYAKIREQAEQVKPRLIVAGASAYSREIDFKKFREIADHVGAFLMVDMAHIAGLVAAGLHMNPVPYSDVVTTTTHKTLRGPRGGMILAKAEYGKAINSALFPGIQGGPLDHVVAAKAVALGEALQPAFKTYAQQIIDNMHAMVAGFKEDEHLRLISGGSDNHMVLVDVTGYGVNGRQVQDLLDEVDITTNKNQIPGEQNGPFKTSGIRVGTAAITTRGFTPEESKRVAELISMAIAHRDEQPVLDQIRQEVLALTARHPLS
>NZ_CP044228.1|WP_064460605.1|292422_293445_-|threonylcarbamoyl-AMP-synthase
MAKRYHESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQYATITPDAAKLMDTFWPGPLTIILNILPGRLSMKVTGGLQTAAFRNPDDALTRKLIATAGVPLVGPSANTSGKPSPTTADHVLHDLADKIAGVLDDGPTRVGVESTIIDLTVTPPAILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAPGMKYKHYAPAAQVVVVDTIDQFDDAVAWAKKTGQTFGLLATDPILAHFPDVPSYSLGQDITSATHALFAGLRWFDLHPDVTLVLAQAFSHSELSAAYMNRLLKSAGNMHYQPNMPTDRF
>NZ_CP044228.1|WP_064460606.1|293544_294375_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MSKTYAEALKWASLLLTKQKVDPDGARYVLMTRADWTPSQLILHRQDPMPDAAWRQFQADVARLANFEPAQYITGQAPFFGTMFAVTPAVLIPRFETEELVAWVAEEQTNAQTGLDMGTGSGAIGLTLARQLPQIDMTLSDVSPSALAVAKQNAAAQKVNVHFVTSDLFKHLPGRFDFVVTNLPYIAPEETSVMDQSTLRYEPKLALFADHHGLALFERFVTELPQHLNPHGAAYLEFGYHQEPALRQLFAEKLPQAQATFRRDMAGHPRMVKLQF

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Crispr_ID: NZ_CP044228_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044228_3

2281592-2282947

TypeII

Consensus_repeat	Method
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	PILER-CR
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CRISPRCasFinder
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CRT

20 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP044228_3

>merge|NZ_CP044228|3|2281592-2282947|PILER-CR,CRISPRCasFinder,CRT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTGCAAGGCCTTCATGATTTCGTACATATCCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCGGCTGGGACCCCGGCGACGACTGTATGAGCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCCAAGTCTATGAGCAGCAGCTCTTCATGTTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCAGCGTTGATTTATGCCTTACAACGAGCAATGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCAGTGCAGCTGATCGTCAATTTCCTGCAAAAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTTACCGTGAGTGCCGTTTGGGACTACCAGCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTTGTAAACATAATAAAAACACCTTTCTATAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTATAGCCCTTGCAATCATAAACAAGTATATGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTGTTAATGCTAATGAAATTGCCACAAAAGTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCCAAAGTCATATGTATAAAGACCCTAAAGGTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTAAATCAGCGTGGGCAAGTTGTTTACACGGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCCACGAAGACTACACGCACGCTGATGACTCAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCGATGAAGAAGAACTGACAAAGATGATCAAGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCAAGCCGGTTAGACGTGACATGCAAGAGCTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTGGCTTCCCATGTATTTGACACATTACCTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCCATGCCGCAATCATTTGGGTGTCGTCATTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTTCCACGCCAGTGTCTGATGGTACTGTTGAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTAGCTTGTTTGATAATGAATAGGATCGCGTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCAGCAAAATCAAAAAACAACTTGAACTTTTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCGCCGTAACGGTCTGGTCAAATTCACTCACAGTCTCAGGTAGATGTCAGATCAATCAATTCAAAAAC

>NZ_CP044228|3|1|2281592-2282749|PILER-CR
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TGCAAGGCCTTCATGATTTCGTACATATCC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	GGCTGGGACCCCGGCGACGACTGTATGAGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CAAGTCTATGAGCAGCAGCTCTTCATGTTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	AGCGTTGATTTATGCCTTACAACGAGCAAT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	AGTGCAGCTGATCGTCAATTTCCTGCAAAA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TTACCGTGAGTGCCGTTTGGGACTACCAGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TTGTAAACATAATAAAAACACCTTTCTATA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TATAGCCCTTGCAATCATAAACAAGTATAT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TGTTAATGCTAATGAAATTGCCACAAAAGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CAAAGTCATATGTATAAAGACCCTAAAGGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TAAATCAGCGTGGGCAAGTTGTTTACACGG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CACGAAGACTACACGCACGCTGATGACTCA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	GATGAAGAAGAACTGACAAAGATGATCAAG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	AAGCCGGTTAGACGTGACATGCAAGAGCTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TGGCTTCCCATGTATTTGACACATTACCTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CATGCCGCAATCATTTGGGTGTCGTCATTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TTCCACGCCAGTGTCTGATGGTACTGTTGA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC

>NZ_CP044228|3|3|2281592-2282947|CRISPRCasFinder
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TGCAAGGCCTTCATGATTTCGTACATATCC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	GGCTGGGACCCCGGCGACGACTGTATGAGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CAAGTCTATGAGCAGCAGCTCTTCATGTTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	AGCGTTGATTTATGCCTTACAACGAGCAAT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	AGTGCAGCTGATCGTCAATTTCCTGCAAAA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TTACCGTGAGTGCCGTTTGGGACTACCAGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TTGTAAACATAATAAAAACACCTTTCTATA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TATAGCCCTTGCAATCATAAACAAGTATAT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TGTTAATGCTAATGAAATTGCCACAAAAGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CAAAGTCATATGTATAAAGACCCTAAAGGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TAAATCAGCGTGGGCAAGTTGTTTACACGG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CACGAAGACTACACGCACGCTGATGACTCA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	GATGAAGAAGAACTGACAAAGATGATCAAG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	AAGCCGGTTAGACGTGACATGCAAGAGCTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TGGCTTCCCATGTATTTGACACATTACCTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CATGCCGCAATCATTTGGGTGTCGTCATTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TTCCACGCCAGTGTCTGATGGTACTGTTGA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TAGCTTGTTTGATAATGAATAGGATCGCGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	AGCAAAATCAAAAAACAACTTGAACTTTTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	GCCGTAACGGTCTGGTCAAATTCACTCACA
GTCTCAGGTAGATGTCAGATCAATCAATTCAAAAAC

>NZ_CP044228|3|1|2281592-2282947|CRT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TGCAAGGCCTTCATGATTTCGTACATATCC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	GGCTGGGACCCCGGCGACGACTGTATGAGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CAAGTCTATGAGCAGCAGCTCTTCATGTTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	AGCGTTGATTTATGCCTTACAACGAGCAAT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	AGTGCAGCTGATCGTCAATTTCCTGCAAAA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TTACCGTGAGTGCCGTTTGGGACTACCAGC
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TTGTAAACATAATAAAAACACCTTTCTATA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TATAGCCCTTGCAATCATAAACAAGTATAT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TGTTAATGCTAATGAAATTGCCACAAAAGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CAAAGTCATATGTATAAAGACCCTAAAGGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TAAATCAGCGTGGGCAAGTTGTTTACACGG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CACGAAGACTACACGCACGCTGATGACTCA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	GATGAAGAAGAACTGACAAAGATGATCAAG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	AAGCCGGTTAGACGTGACATGCAAGAGCTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TGGCTTCCCATGTATTTGACACATTACCTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	CATGCCGCAATCATTTGGGTGTCGTCATTG
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TTCCACGCCAGTGTCTGATGGTACTGTTGA
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	TAGCTTGTTTGATAATGAATAGGATCGCGT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	AGCAAAATCAAAAAACAACTTGAACTTTTT
GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC	GCCGTAACGGTCTGGTCAAATTCACTCACA
GTCTCAGGTAGATGTCAGATCAATCAATTCAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044228.1\|WP_064656954.1\|2294277_2295063_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181585
NZ_CP044228.1\|WP_150861282.1\|2278781_2279519_+\|hypothetical-protein	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374655
NZ_CP044228.1\|WP_032965178.1\|2279705_2280611_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP044228.1\|WP_005684671.1\|2269111_2270125_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP044228.1\|WP_150861235.1\|2277284_2278781_+\|IS5-like-element-ISLrh2-family-transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP044228.1\|WP_032965180.1\|2280890_2281571_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP044228.1\|WP_032965174.1\|2266154_2267459_+\|pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|274244
NZ_CP044228.1\|WP_032965179.1\|2280588_2280894_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP044228.1\|WP_064656953.1\|2295765_2296632_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP044228.1\|WP_070706826.1\|2287313_2288936_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP044228.1\|WP_070706827.1\|2285626_2287321_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|227321
NZ_CP044228.1\|WP_064656956.1\|2289067_2289940_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NZ_CP044228.1\|WP_049174859.1\|2270121_2271864_+\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|227321
NZ_CP044228.1\|WP_005684670.1\|2267690_2269115_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP044228.1\|WP_070706829.1\|2284989_2285415_+\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|377759
NZ_CP044228.1\|WP_141756131.1\|2283052_2283388_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044228.1\|WP_005692554.1\|2295128_2295773_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379133
NZ_CP044228.1\|WP_049174861.1\|2271844_2273572_+\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP044228.1\|WP_070706824.1\|2290515_2292351_+\|PTS-beta-glucoside-transporter-subunit-IIABC	unknown	unknown	gnl\|CDD\|273919
NZ_CP044228.1\|WP_070706831.1\|2283702_2284800_+\|peptidoglycan-binding-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP044228.1\|WP_064656954.1\|2294277_2295063_+\|SDR-family-oxidoreductase	gnl\|CDD\|181585	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.	1.26758e-173
NZ_CP044228.1\|WP_150861282.1\|2278781_2279519_+\|hypothetical-protein	gnl\|CDD\|374655	pfam16595, Cas9_PI, PAM-interacting domain of CRISPR-associated endonuclease Cas9. Cas9_PI is a family found at the C-terminal of bacterial type II CRISPR system Cas9 endonuclease. This domain adopts a novel protein fold that is unique to the Cas9 family. It is positioned in the structure-DNA-complex to recognize the PAM sequence on the non-complementary DNA strand of the crRNA. PAM sequence is protospacer-adjacent motifs on DNA. See family CRISPR-DR2, Rfam:RF01315. Cas9 carries two nuclease domains, HNH and RuvC, which cleave the DNA strands that are complementary and non-complementary to the 20 nucleotide guide sequence in crRNAs, respectively.	2.88664e-09
NZ_CP044228.1\|WP_032965178.1\|2279705_2280611_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	6.41102e-93
NZ_CP044228.1\|WP_005684671.1\|2269111_2270125_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	2.7959e-90
NZ_CP044228.1\|WP_150861235.1\|2277284_2278781_+\|IS5-like-element-ISLrh2-family-transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.19244e-13
NZ_CP044228.1\|WP_032965180.1\|2280890_2281571_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	8.97298e-70
NZ_CP044228.1\|WP_032965174.1\|2266154_2267459_+\|pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP044228.1\|WP_070706829.1\|2284989_2285415_+\|NusG-domain-II-containing-protein	gnl\|CDD\|377759	pfam07009, NusG_II, NusG domain II. This domain is found in some NusG proteins where it forms domain II. However most NusG proteins are missing this domain. In other cases this domain is found in isolation. The function of this domain is unknown.	3.05741e-34
NZ_CP044228.1\|WP_064656953.1\|2295765_2296632_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	9.70247e-59
NZ_CP044228.1\|WP_070706826.1\|2287313_2288936_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.09665e-98
NZ_CP044228.1\|WP_070706827.1\|2285626_2287321_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	3.92347e-89
NZ_CP044228.1\|WP_064656956.1\|2289067_2289940_+\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	1.66119e-43
NZ_CP044228.1\|WP_049174859.1\|2270121_2271864_+\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP044228.1\|WP_005684670.1\|2267690_2269115_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP044228.1\|WP_032965179.1\|2280588_2280894_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	5.81213e-23
NZ_CP044228.1\|WP_049174861.1\|2271844_2273572_+\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	3.56398e-161
NZ_CP044228.1\|WP_070706824.1\|2290515_2292351_+\|PTS-beta-glucoside-transporter-subunit-IIABC	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_CP044228.1\|WP_005692554.1\|2295128_2295773_-\|hypothetical-protein	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	0.000320345

>NZ_CP044228.1|WP_032965180.1|2280890_2281571_+|type-II-A-CRISPR-associated-protein-Csn2
MNLAYYPFQLITTKPSVITVIDTGLPKVLLDLVQAFRNDDDGIVLSNEQMQIQELRKASLWIGDPVLELDLDKLFQRLIIKKVSQLIEDQRLIELVELAQQLAMSLLKEPLLSELPVTVEPGGKLEQIIKYCNVHFDEEVVTEPSSRIEAAIQTLVKLEEKRLVIFTNISHYLDVEGMSRLLDQVKDTSLELLLIEFSDVDRRKFFEKCQYIYIDKDFMDSRELID
>NZ_CP044228.1|WP_032965179.1|2280588_2280894_+|CRISPR-associated-endonuclease-Cas2
MRLMIMFDLPVATSKDRRNYRRFRRALIDEGFLMMQYSVYVRVCKTKKSAAYMEQRIATVKPPTGTVQTLMVTEAQYQSMHFMVGTEKQDIRNSADRTVMI
>NZ_CP044228.1|WP_032965178.1|2279705_2280611_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSFIITQHCKVTTKQHSLVVQTNGEVYTMPIDDLNQVIFTTTRALISADAIAALADANAKVIFSGRDGQPVTETKNLYSDRRRAEQVRLQVNWPLDLIETVWTKIVAAKIRNQAQVAKLCGHDDQGLLDDLDALEINDVSNREASAARRYFKLMFGDDFSRSDICVTNATLNYGYSVLLSTTNRAIVSTGHLTEVGLHHHSASNPYNLGSDLMEPFRPAVDYWVAQHRIKELTPDVKYGLIDLLNLEITFNGKKALLQNAVADHVESCLAFLDGKSKVCRIEVKFPDEVSGHAINDHV
>NZ_CP044228.1|WP_150861282.1|2278781_2279519_+|hypothetical-protein
MTSHYVSIIRTFKKEDPVYKVVNISTADVSLLAEKERVSEDLADMYLKELIAKKLAKGKSGKNFASEPFEIVLPRVGKDSLFKNKKYGLFLIESATELHNYQELWLPRNDQLLIKRVQTHQIEESKADYELTRMYRNIAGQVDHYFRLYKIRKFAGKLQASVDDFAGLPVYKNEITDGKVEVLMALLKKLNGAISKGKTNLTTVKLQSDFGRTLLTKGIVLEDDSSIIYQSPTGLFERSIKLADL
>NZ_CP044228.1|WP_150861235.1|2277284_2278781_+|IS5-like-element-ISLrh2-family-transposase
MQPLFARNAYALGFTLALIADLSEELIMVYRQKATQLSLESFGSALGTPLSPDNEWVQYAELIPWAKLEEAYQLQFPSKTGRAAKPFRLLYGATLIKLKKGLTDRQVVDDIRDTPAYQYFIGLPEYRAKKPFEHTTLVHFRQRLSAISDLIRNITNDFTRERLEADLPEGTHVLISDATAVPVKIKYPQDTTLLNQSRLNLEQMVTDLAHGLGVEIPRTYRREAKGKWTAFSRKPRRQNKERRKQLQAQLQYIRRDLRYVAELLAQGGQLTDWQAQRLEVIKQVYEQQLFMFENHTHHVENRIVSLQQPYIRPIVRGKAKQSVEFGAKIDCSMLDGVIDVERFDFNSFNESTDLEVTLDHAFDLVGEYPDEVLVDTLYRTRDNINLCKKLGIKLNGPKLGRKPKHVDPKQRKADVSAENRRGAIERKFAFLKGSFGLDLVNTRTAESLVVTVDSAIALANIDLLLKLFSVPISIVVEQGGLHYQINYKVTEIRPETAT
>NZ_CP044228.1|WP_049174861.1|2271844_2273572_+|thiol-reductant-ABC-exporter-subunit-CydC
MHWLKNEHWVRPDLKRYRWLLFWSLILGIMTFVFAGALMFTSGFLIDKSATKPLFAAIYVTVVLTRAFGVGRPVFQYAERLTSHNWVLRITSHMRRKLYKVLETDAAFVSEHHQTGDILGLLADDIGHIQNLYLRMIFPTVVGAGLTVIATLLLGCFNWGFALWIFLLLLFQILILPWWGLVVERFRKAEQKQLNHDAYVSLTDSVLGLSDWVITHRDQDFMKQSLAAPKKLAASTAKSKRFQWGRDFIGQLLFALIAVSMLIWTNLEWTGNQSMANWVGAFVLVVFPLDQAFSGIAQGVGEWPTYRDAIRHLNDLHPVTRELPQQQPVPTTFNKIELNDVSFRYTPSDPELITNIDLTIQAGEKIAILGPSGMGKTTLLQLVLGDLTPTKGHVLIDGQDVLDYQNHRTNLFAVLDQSPFLFNTSIVNNVRLGNEDASDETVAAALKAVKLDQLVAQLPNGMNSSVEEAGFGFSGGERQRLSLARILLQDAPIVLLDEPTVGLDPITEQALLDTMFTVLKGKTVLWVTHHLQGVSQTDRVIFLEDGRLTMNDSPQHLAEQNKRYQNLYALDAGLR
>NZ_CP044228.1|WP_049174859.1|2270121_2271864_+|thiol-reductant-ABC-exporter-subunit-CydD
MIDKTLLRLSGMRKTMTMLAGFALVQAFVILLQGKYLAEGIVHSWNRQSLAGLWLPLGLFAAAFTVRQLIVWVRNRIAAKFAMKSAAWLQAQLLRHLFALGPAAVAKEGTGNLVTMALDGIPEAENYIELILNKIVNMSIIPWILVAYIWYENWLTGFTLLIMFPIIILFMVILGLAARDKSESQYAGFQKMSNHFIDSLRGLKTLQLMGISREYANNVYEVSEDYRKQTMGVLRIAMLSTFALDFFTTLSIAVVAVFLGIKLMDGTIPLYPAMVALILAPEYFMPIRDFGTDYHATLNGKNAMTAIWKVIDQPLPTDTHVLPAFKGWQPQDTLSMQHLDFTYADKRAGIQDANLTFTGPEKVAIIGASGSGKSTLLNLIGGFLQPQAADITVRGTKILHMTQTAWQDHLSYIPQDPYLFADTIAANIRFYRPDASDQAVRDAAESAGLTTWINSLPDGYATRIGEGGRGISGGQAQRIALARTLIDTNRSIWLFDEPTAHLDIETEAALKETLVPLFANRLVIFASHRLHWLNQMDRVIVVDGGKIVAEGTPTELAAHSKPYQALVHEMRGEFNALVEK
>NZ_CP044228.1|WP_005684671.1|2269111_2270125_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MSWLQILWFFLLFVLFSGFFVLEGFDFGVGMSTKLLAHNSDEEDQLVATIGPHWDGNEVWLITAGGAMFASYPMWYASLFSGFYIMFFLVLFGLIVRGVSFEFAAHAETKTGRNIWRWALACGSLIPPFILGMIFTAIIQPLPITKNGDVFPTLGNQINLLTIVGGVAVTLMMLMHGLNFIRLKTTGDLRKRARDWNSKLYYLLYAGEVVFAVLLFFMTDFFKERPISTLLILVVIVGSTVAAHIGVLKDNEVLSFIGSALGLVGVVGVIFNGLFPRVMIGQNAAMSILAKDASASPLTLTIMTIVAVILLPIALAYFIWSYVVFHKRIQAKGAVSE
>NZ_CP044228.1|WP_005684670.1|2267690_2269115_+|cytochrome-ubiquinol-oxidase-subunit-I
MLMAMDVLSLARFQFAMTTVFHFFFVPFSIGMGLVAAIMETMYVRKKDETYKKMAKFWGKIFLLSFAVGVVTGIIQEFQFGMNWSNYSRFMGDIFGVPLAIEALLAFFMESTFIGLWMFTWDRFKPAVHAIFIWMTWLGTTLSAIWILSANAFMQHPTGFAISQTTGRVKLVDFGAVITNPQLWVEFPHVIFGAFTTAGFAVAGMAAWRLLKKDHVDFYKKSLKVGLVVGTIASACAIGFGDLQTQFIIKDQPMKFAATEGIYKDTSDPAPWTLVELINTKDHTTSGNIEVPYLLSLLSYHKMNGSVKGMETANKELEAKYGKDKNYYVPVKTLFWSFRVMAGGGVLLFLLGVLGLWFSRKKKDTLLDQRWLLYILGFALWLPFIINTAGWFITELGRYPWVVYGLYTIADAVSPTTTAGQLLFTNICYFLIFTLLGGVMIYYSHRVLKNGPDGDLNTDYGVNSDPFAKEAFAK
>NZ_CP044228.1|WP_032965174.1|2266154_2267459_+|pyrimidine-nucleoside-phosphorylase
MRMVDLITKKRDHGELTDDELTWMIQQYTAEKIPDYQMSAFLMAVYFNGMSTAERDHFAFAMLHSGDVLDLSDIPGIKVDKHSTGGVGDKISIPLAPLVASLGVPVPMISGRGLGHTGGTLDKLESIPGFNVNETQAQFKHQVQTLHQAIVSASRDVAPADRRIYALRDVTGTVESIPLIAGSIMSKKLASGTDALVFDVKVGNGAFMKTSEDARALAKALVSISQAAGVKSVALLTDMNQPLGITIGNSLEIAESIAILKNRGPRDVHDLTVALAAQMLVLGKKAPSLEIATGLAEDALRDGRALNAFKQLIQAQGGDPAVVDDPRKLPQAAYRIPVKAEQSGIVTAIDTNALGVAAMQLGGGRAQKGDKLDLAVGLVLHKKLGTPVTKGDTLVMLHANDQHVDAIVELVRQAYHIGTTAPKKLPLIHEVIRP
>NZ_CP044228.1|WP_141756131.1|2283052_2283388_+|hypothetical-protein
MLLDGYAPLDAETLRVMKVREVYSPINRVDMTAEQLGVCFPLRLVNRKQLRELRELIPRDLTPTEIFLRTARLKGQAKPLHNYAPDSDVWLDGIIGSLYFGGSDDGHDDFY
>NZ_CP044228.1|WP_070706831.1|2283702_2284800_+|peptidoglycan-binding-protein
MKKVAIIGATLLLSIGLVACSGGSGSSSSKSSTASQTSNAKVKIKTGADANAKVPAAGTLVMRQLYAAPHGKQSFAAVNVTLNGDTIVSARINEFQYVKKSSDWTGVPNSNKDFGKNYPSGQILIAKAENSKPYSALMKKEAKATHTWEENETAITNFVKGKKISDLKAAVAEVKGTKKVSDVVSGATFADTAGYLQAIYDAATTGMVAEGIQTTDTNLTEGQVLAAPHGTQSFGIVTVAMQGDKIANVFLDEFQYMPAKDFGAVPNSNTDFGKGIKAGTVLASKRANSDAYSAIMKSKGKATKTWQENSTAIDEFAKGKTIAELEAAVSDLKGKKKASDVVSGATFTDTDGYLAAIIKAAKAAK
>NZ_CP044228.1|WP_070706829.1|2284989_2285415_+|NusG-domain-II-containing-protein
MRWLKRYVRPLDYVIVVLLFIACFIPVGIFSLTEANVNTSQKVAVISVNGQVKRRIKLGAHTRDQQFTLYPAKDQYNIIEVDGERIRDKEDNSPDQIAVHTGWISRIGQQSICLPHKLLIEIKPAQGNHGSNGDAGGLVHP
>NZ_CP044228.1|WP_070706827.1|2285626_2287321_+|ATP-binding-cassette-domain-containing-protein
MFGLLKYGRDQRWAGVIEALFDWLPTLLPILIALNLGTGHQVAALVTTLVLMAVWLGYVVGYERHHRHAWAMSAKRELRDRYFTALYQRNDAVATTAADHAVIQRDLGGLNNLDMFYSTLFPTILQAGMTFLVLMGLSFWYRSWLALLPFGCVFLIGLAMMFLGKRMSAQNKAHLSGFLKMGGRFMDDLRGMTTLVMYDAADRYAQKFADDSEFFRQATMNLLKTQLQTLFVINGFVYLTVFAGGFITAVQLVAGQLPVAGAFATWFTLAMMMVNARQLGYFVHVVKSNGPSLAAILATIAKAKAAPDTVKITDNRPLSQITLDQVSVGYAADAPLVTGINATLVPGKLYGLAGENGTGKSTLIQAILGRLKPLSGAIMADQTAVSALSNVQQAAVFGYVTANEYLFSGTIQENLLLGNRFGDQWQARLASLGLMQFVPSLEKGYATQVGENGRLLSPGQRQQLAFARMLLADKTVYLLDEITSSIDEANAAIILQAVKKLSRHKIVLFISHDLKAMTQADEVWFIHDHQLTVANHQTLYQKQPAYRQLVDNPEMMENEVNSND
>NZ_CP044228.1|WP_070706826.1|2287313_2288936_+|ABC-transporter-ATP-binding-protein
MIRGLLRYTHHLTGAIFISFLIGMLAELAKVVVLVLAAMMLFDPQNAGQLLLPGLIAIILLGLGSFGEQYSGHYVAFHVLADLRGAVYRQLVKLAPAKLDTQASGKLLKLIGSDIEAMEIFYAHTLVPVAIGLVYGLLVVGIYSQLNWLAAIIALISYVAVGMVVPYARHRQLTAKTQAADRLKAANQQYLLESVRGMAVVRQLGIAKQRMKKGNEGFDQEATAFQQAQFSQLLKNMAATVVIVGGWLLMIWLSGWQQPTAIQQALLAIFPLTFGPLLALNNLPGSLLNGFAAAKNLFKLLQEQPLNAALPNATQTVTTIDQIQVDHVGFSYPTRPETVLKDVTVTLNAGEIVGFVGASGSGKSTLAKLIMGWYPVSHGQILIDGNDLATIKPTALRNQMNYLPQTPVFFSESVRDNLTLHDPAITDQQIWTVLDQVKLRTRLEQMSHGLDTVVAASHVPFSSGEQQRLELARALLHPSSVLVLDEPTSNLDTENERLILETIKTYYHGIVILISHRPESAAFADRVYRFSEHQVVLATE
>NZ_CP044228.1|WP_064656956.1|2289067_2289940_+|PRD-domain-containing-protein
MIIDAILNNNAVVVRRDKRDIIVVERGIGFHAKKGDQLTLQDSMKVYVPEDHAKLKIAMATIASLPDEYLTIAARIIQEAEVQLHTKFNSYLLIELADHIHFAVTRLHEQLILHNKLLWEIQIAYEPAFRMGEWALTEIANQIGEQLPEDEAGFIALKFVSNDLSQQHPVNSVAFTQMLANITKIIFYQLGLNMNAKTPEYQRLVIHLKFFLQRVYATSTAKTPVSPEPYDQALLAHLQQDYAQAYRCMEDVVKFMQAKLPGPISKNEQIYLTLHIARLAKSQGQSLKSS
>NZ_CP044228.1|WP_070706824.1|2290515_2292351_+|PTS-beta-glucoside-transporter-subunit-IIABC
MGETALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKLEPSLSDGTEGPATVTHEKMTFKRAFNGLLTFISGVFTPFLGAMAGAGILKGLLSLAVVLGWLTTKSGAYQIWWAAADGIFYFLPLALAFTAAKQLKVNQFVAMAIAAAMVYPNIVALVGKPSIDFFGIPVVAANYTATVLPILLVVVVQKFLEPFFNRIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQVFVIFGVHWALVPVMMNNIALYGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTIIALFGITEPTIYGITLKLKKPFYCACVAGAVGGIIVAMSGAGANVASLASVLSLPTYLGKGFGVSVIGDVVAFVLGVGLTLAFGGINAPAKNQAAAAVVADHAETLATPVKGTLVALSDVPDEVFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGKHFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMMIVTNSDQYQVETRSDGATDDDALMTLA
>NZ_CP044228.1|WP_064656954.1|2294277_2295063_+|SDR-family-oxidoreductase
MYRDLKGKVAVVTGGSKGIGAGIAERFGKEHMAVVINYLGDHEGARKTADSVIKNGGQAVSIHADVSTEAGIASLVKTAESEFGRLDVWVNNAGMEIKAPTHEVSLDDWNKVIAINQTGVFLGARAALNYFLDHHQPGNIINITSVHEQIPWPTFASYTAAKGAVKLFTETIAMEYANRRIRVNAIGPGAIETPINAEKFADKAQYDQTVAMIPQGRLGKPEDVAAGAAWLASTESSYVTGTTLFIDGGMTLYPAFKDGQG
>NZ_CP044228.1|WP_005692554.1|2295128_2295773_-|hypothetical-protein
MRDLVKLVGLDLAVFHTNSKKYFWFGTLISIVLLLLPFLNGDLATPLAGGITGLSIGLLMMPFVGVDRQGMENLYTMLPVRRTTIVAGHYLFGLMTVGLIDACSMLIIGLGWMARVNPIRDSQAFGWMLCFGTALMLFQIILSFPLMIGLGFKRAPLAAYFPLAILLIAVFLERSFQVDLDALKPWFGVIVAIFISAFIFSWWLSTVLYKKREF
>NZ_CP044228.1|WP_064656953.1|2295765_2296632_-|ABC-transporter-ATP-binding-protein
MTTDLLTVSHLNKHYEDFHLADVSFHLPAGYIMGFIGPNGAGKTTTIKAILDMLQPDSGAINLLGQTTVAARKQVRDQLGVVLDGMVYPDSWQSTAVNRFVGPFFPSWDAAYFKQLCHDFAIPEKTKYRDLSMGTKIKLQLAAALAHHPQLLILDEPTSGLDPIARDELIAILQDFISDDQHSVLISTHSIIELAKVADYVTYLLAGKVTFTGALSDLLDRYIMIKGGPNELTPGIQATIIGLQQSRVGFSGIWPADQADQLPDSIVQETVDLETLMIAFGKGRRAHA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP044228_3	3.1\|2281628\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281628-2281657	30	NZ_CP044228.1	1419355-1419384	1.0
NZ_CP044228_3	3.2\|2281694\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281694-2281723	30	NZ_CP044228.1	1363211-1363240	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	430045-430074	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	876634-876663	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	1020470-1020499	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	1148137-1148166	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	1432758-1432787	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	1651841-1651870	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2111677-2111706	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2187818-2187847	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2278131-2278160	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2484551-2484580	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2532795-2532824	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	885370-885399	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	1054300-1054329	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	1284156-1284185	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	1309996-1310025	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	1368002-1368031	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	1451360-1451389	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	1874722-1874751	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2063162-2063191	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2106045-2106074	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2232286-2232315	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2538606-2538635	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2641410-2641439	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2764147-2764176	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2772929-2772958	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP044228.1	2928677-2928706	1.0

1. spacer 3.1|2281628|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1419355-1419384, mismatch: 0, identity: 1.0

tgcaaggccttcatgatttcgtacatatcc	CRISPR spacer
tgcaaggccttcatgatttcgtacatatcc	Protospacer
******************************

2. spacer 3.2|2281694|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1363211-1363240, mismatch: 0, identity: 1.0

ggctgggaccccggcgacgactgtatgagc	CRISPR spacer
ggctgggaccccggcgacgactgtatgagc	Protospacer
******************************

3. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 430045-430074, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

4. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 876634-876663, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

5. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1020470-1020499, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

6. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1148137-1148166, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

7. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1432758-1432787, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

8. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1651841-1651870, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

9. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2111677-2111706, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

10. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2187818-2187847, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

11. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2278131-2278160, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

12. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2484551-2484580, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

13. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2532795-2532824, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

14. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 885370-885399, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

15. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1054300-1054329, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

16. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1284156-1284185, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

17. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1309996-1310025, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

18. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1368002-1368031, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

19. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1451360-1451389, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

20. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 1874722-1874751, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

21. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2063162-2063191, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

22. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2106045-2106074, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

23. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2232286-2232315, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

24. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2538606-2538635, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

25. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2641410-2641439, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

26. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2764147-2764176, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

27. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2772929-2772958, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

28. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to position: 2928677-2928706, mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP031786	Lactobacillus paracasei strain 10266 plasmid pLP10266, complete sequence	10876-10905	0	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP031786	Lactobacillus paracasei strain 10266 plasmid pLP10266, complete sequence	7312-7341	0	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP017264	Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.23, complete sequence	33350-33379	0	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP052067	Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence	41699-41728	0	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP048005	Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence	30546-30575	0	1.0
NZ_CP044228_3	3.4\|2281826\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281826-2281855	30	NZ_CP029549	Lactobacillus paracasei strain EG9 plasmid pEG9C, complete sequence	8600-8629	0	1.0
NZ_CP044228_3	3.4\|2281826\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281826-2281855	30	NZ_CP044367	Lactobacillus paracasei strain TD 062 plasmid unnamed6	6300-6329	0	1.0
NZ_CP044228_3	3.4\|2281826\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281826-2281855	30	NZ_AP012543	Lactobacillus paracasei subsp. paracasei JCM 8130 plasmid pLBPC-2, complete sequence	5030-5059	0	1.0
NZ_CP044228_3	3.4\|2281826\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281826-2281855	30	NC_012550	Lactobacillus brevis plasmid pLB925A03, complete sequence	2865-2894	0	1.0
NZ_CP044228_3	3.6\|2281958\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281958-2281987	30	NZ_CP023494	Lactobacillus plantarum strain NCIMB 700965 plasmid unamed4, complete sequence	10448-10477	0	1.0
NZ_CP044228_3	3.6\|2281958\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281958-2281987	30	NC_019219	Lactobacillus plantarum cryptic plasmid pLJ42, complete sequence	5444-5473	0	1.0
NZ_CP044228_3	3.6\|2281958\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281958-2281987	30	NZ_CP026508	Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed3, complete sequence	14854-14883	0	1.0
NZ_CP044228_3	3.13\|2282420\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282420-2282449	30	NZ_LS991422	Lactobacillus casei isolate CECT 9104 plasmid 2	6570-6599	0	1.0
NZ_CP044228_3	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	NZ_CP029538	Lactobacillus paracasei strain LC355 plasmid unnamed2, complete sequence	12820-12849	1	0.967
NZ_CP044228_3	3.9\|2282156\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282156-2282185	30	NC_012530	Lactobacillus phage Lb338-1, complete genome	80632-80661	1	0.967
NZ_CP044228_3	3.14\|2282486\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282486-2282515	30	NC_005893	Lactobacillus phage phiAT3, complete genome	31016-31045	1	0.967
NZ_CP044228_3	3.14\|2282486\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282486-2282515	30	AY605066	Bacteriophage phi AT3, complete sequence	31016-31045	1	0.967
NZ_CP044228_3	3.18\|2282750\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282750-2282779	30	MH983004	Lactobacillus phage BH1, complete genome	27459-27488	1	0.967
NZ_CP044228_3	3.6\|2281958\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281958-2281987	30	NZ_CP012658	Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK09, complete sequence	3056-3085	2	0.933
NZ_CP044228_3	3.13\|2282420\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282420-2282449	30	NC_005893	Lactobacillus phage phiAT3, complete genome	27148-27177	2	0.933
NZ_CP044228_3	3.13\|2282420\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282420-2282449	30	AY605066	Bacteriophage phi AT3, complete sequence	27148-27177	2	0.933
NZ_CP044228_3	3.13\|2282420\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282420-2282449	30	AP018361	Lactobacillus phage T25 DNA, complete genome	18186-18215	2	0.933
NZ_CP044228_3	3.13\|2282420\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282420-2282449	30	KC171647	Lactobacillus phage PL-1, complete genome	24335-24364	2	0.933
NZ_CP044228_3	3.13\|2282420\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282420-2282449	30	NC_022756	Lactobacillus phage J-1, complete genome	26386-26415	2	0.933
NZ_CP044228_3	3.18\|2282750\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282750-2282779	30	NZ_LS991422	Lactobacillus casei isolate CECT 9104 plasmid 2	5857-5886	2	0.933
NZ_CP044228_3	3.18\|2282750\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282750-2282779	30	NC_005893	Lactobacillus phage phiAT3, complete genome	27825-27854	2	0.933
NZ_CP044228_3	3.18\|2282750\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282750-2282779	30	AY605066	Bacteriophage phi AT3, complete sequence	27825-27854	2	0.933
NZ_CP044228_3	3.18\|2282750\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282750-2282779	30	KC171647	Lactobacillus phage PL-1, complete genome	25012-25041	3	0.9
NZ_CP044228_3	3.18\|2282750\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282750-2282779	30	MN830258	Lactobacillus phage JNU_P9, complete genome	30517-30546	3	0.9
NZ_CP044228_3	3.18\|2282750\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282750-2282779	30	NC_022756	Lactobacillus phage J-1, complete genome	27063-27092	3	0.9
NZ_CP044228_3	3.5\|2281892\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281892-2281921	30	NZ_CP012189	Lactobacillus paracasei strain CAUH35 plasmid unnamed2, complete sequence	35668-35697	4	0.867
NZ_CP044228_3	3.18\|2282750\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282750-2282779	30	NC_007501	Lactobacillus phage Lc-Nu, complete genome	22748-22777	4	0.867
NZ_CP044228_3	3.18\|2282750\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282750-2282779	30	AY131267	Bacteriophage Lc-Nu, complete genome	22748-22777	4	0.867
NZ_CP044228_3	3.9\|2282156\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282156-2282185	30	NC_009929	Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence	159195-159224	5	0.833
NZ_CP044228_3	3.2\|2281694\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281694-2281723	30	MH617445	Inoviridae sp. isolate ctcf2, complete genome	1434-1463	6	0.8
NZ_CP044228_3	3.7\|2282024\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282024-2282053	30	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	152387-152416	6	0.8
NZ_CP044228_3	3.11\|2282288\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282288-2282317	30	NZ_CP019064	Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence	137355-137384	6	0.8
NZ_CP044228_3	3.13\|2282420\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282420-2282449	30	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	784143-784172	6	0.8
NZ_CP044228_3	3.13\|2282420\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282420-2282449	30	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	487705-487734	6	0.8
NZ_CP044228_3	3.5\|2281892\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281892-2281921	30	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	546211-546240	7	0.767
NZ_CP044228_3	3.5\|2281892\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281892-2281921	30	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	119119-119148	7	0.767
NZ_CP044228_3	3.7\|2282024\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282024-2282053	30	NZ_CP020425	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence	1678-1707	7	0.767
NZ_CP044228_3	3.7\|2282024\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282024-2282053	30	NZ_CP029156	Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence	45938-45967	7	0.767
NZ_CP044228_3	3.7\|2282024\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282024-2282053	30	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	541624-541653	7	0.767
NZ_CP044228_3	3.7\|2282024\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282024-2282053	30	NZ_CP029153	Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence	39982-40011	7	0.767
NZ_CP044228_3	3.7\|2282024\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282024-2282053	30	FN668942	Clostridium difficile BI1 plasmid pCDBI1, complete sequence	341-370	7	0.767
NZ_CP044228_3	3.7\|2282024\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282024-2282053	30	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	639252-639281	7	0.767
NZ_CP044228_3	3.7\|2282024\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282024-2282053	30	NZ_CP011969	Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence	42187-42216	7	0.767
NZ_CP044228_3	3.9\|2282156\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282156-2282185	30	NZ_CP014570	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence	8115-8144	7	0.767
NZ_CP044228_3	3.9\|2282156\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282156-2282185	30	MN855617	Myoviridae sp. isolate 527, complete genome	16741-16770	7	0.767
NZ_CP044228_3	3.13\|2282420\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282420-2282449	30	NC_010901	Lactococcus lactis plasmid pNP40, complete sequence	7224-7253	7	0.767
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	1111662-1111691	7	0.767
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	MK448905	Streptococcus phage Javan318, complete genome	16727-16756	7	0.767
NZ_CP044228_3	3.5\|2281892\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281892-2281921	30	NC_013544	Lactobacillus paracasei subsp. paracasei plasmid pCD02, complete sequence	6020-6049	8	0.733
NZ_CP044228_3	3.8\|2282090\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282090-2282119	30	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	26880-26909	8	0.733
NZ_CP044228_3	3.8\|2282090\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282090-2282119	30	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	68413-68442	8	0.733
NZ_CP044228_3	3.13\|2282420\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282420-2282449	30	NZ_CP034684	Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence	113739-113768	8	0.733
NZ_CP044228_3	3.18\|2282750\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282750-2282779	30	NC_024214	Lactococcus phage P162, complete genome	34438-34467	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	NZ_CP011513	Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence	3373-3402	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KX550065	Streptococcus phage SpGS-1, complete genome	15662-15691	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KY065502	Streptococcus phage IPP66, complete genome	14654-14683	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KY065479	Streptococcus phage IPP39, complete genome	14102-14131	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KY065455	Streptococcus phage IPP14, complete genome	14914-14943	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KY065487	Streptococcus phage IPP48, complete genome	14842-14871	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KY065501	Streptococcus phage IPP65, complete genome	15216-15245	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KY065493	Streptococcus phage IPP55, complete genome	14334-14363	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KY065491	Streptococcus phage IPP53, complete genome	15010-15039	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	DQ113772	Streptococcus pneumoniae bacteriophage MM1 1998, complete genome	15714-15743	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KY065490	Streptococcus phage IPP52, complete genome	14708-14737	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KY065492	Streptococcus phage IPP54, complete genome	16518-16547	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	AJ302074	Streptococcus pneumoniae bacteriophage MM1 complete genome	15657-15686	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KT337346	Streptococcus phage phiARI0285-2, partial genome	22612-22641	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	MG592603	Vibrio phage 1.238.A._10N.261.52.F10, partial genome	45936-45965	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	MG592610	Vibrio phage 1.245.O._10N.261.54.C7, partial genome	46419-46448	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	MG592604	Vibrio phage 1.238.B._10N.261.52.F10, partial genome	45928-45957	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KT337348	Streptococcus phage phiARI0378, partial genome	22608-22637	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KT337364	Streptococcus phage phiARI0639b, partial genome	16679-16708	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	KT337358	Streptococcus phage phiARI0468-4, complete genome	22251-22280	8	0.733
NZ_CP044228_3	3.19\|2282816\|30\|NZ_CP044228\|CRISPRCasFinder,CRT	2282816-2282845	30	NC_022791	Streptococcus phage phiBHN167 complete genome	16685-16714	8	0.733
NZ_CP044228_3	3.2\|2281694\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281694-2281723	30	NC_017081	Phycisphaera mikurensis NBRC 102666 plasmid pPSMK1, complete sequence	75458-75487	9	0.7
NZ_CP044228_3	3.5\|2281892\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281892-2281921	30	NZ_CP012189	Lactobacillus paracasei strain CAUH35 plasmid unnamed2, complete sequence	35647-35676	9	0.7
NZ_CP044228_3	3.8\|2282090\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282090-2282119	30	JX415535	Escherichia phage ECBP1, complete genome	47035-47064	9	0.7
NZ_CP044228_3	3.9\|2282156\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282156-2282185	30	MN582103	Podoviridae sp. cty5g4, complete genome	47889-47918	9	0.7
NZ_CP044228_3	3.13\|2282420\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2282420-2282449	30	MH844558	Exiguobacterium phage vB_EauM-23, complete genome	26298-26327	9	0.7

1. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031786 (Lactobacillus paracasei strain 10266 plasmid pLP10266, complete sequence) position: , mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

2. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031786 (Lactobacillus paracasei strain 10266 plasmid pLP10266, complete sequence) position: , mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

3. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017264 (Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.23, complete sequence) position: , mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

4. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052067 (Lactobacillus paracasei strain 347-16 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

5. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048005 (Lactobacillus paracasei strain CACC 566 plasmid p2CACC566, complete sequence) position: , mismatch: 0, identity: 1.0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

6. spacer 3.4|2281826|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029549 (Lactobacillus paracasei strain EG9 plasmid pEG9C, complete sequence) position: , mismatch: 0, identity: 1.0

agcgttgatttatgccttacaacgagcaat	CRISPR spacer
agcgttgatttatgccttacaacgagcaat	Protospacer
******************************

7. spacer 3.4|2281826|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044367 (Lactobacillus paracasei strain TD 062 plasmid unnamed6) position: , mismatch: 0, identity: 1.0

agcgttgatttatgccttacaacgagcaat	CRISPR spacer
agcgttgatttatgccttacaacgagcaat	Protospacer
******************************

8. spacer 3.4|2281826|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP012543 (Lactobacillus paracasei subsp. paracasei JCM 8130 plasmid pLBPC-2, complete sequence) position: , mismatch: 0, identity: 1.0

agcgttgatttatgccttacaacgagcaat	CRISPR spacer
agcgttgatttatgccttacaacgagcaat	Protospacer
******************************

9. spacer 3.4|2281826|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NC_012550 (Lactobacillus brevis plasmid pLB925A03, complete sequence) position: , mismatch: 0, identity: 1.0

agcgttgatttatgccttacaacgagcaat	CRISPR spacer
agcgttgatttatgccttacaacgagcaat	Protospacer
******************************

10. spacer 3.6|2281958|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023494 (Lactobacillus plantarum strain NCIMB 700965 plasmid unamed4, complete sequence) position: , mismatch: 0, identity: 1.0

ttaccgtgagtgccgtttgggactaccagc	CRISPR spacer
ttaccgtgagtgccgtttgggactaccagc	Protospacer
******************************

11. spacer 3.6|2281958|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NC_019219 (Lactobacillus plantarum cryptic plasmid pLJ42, complete sequence) position: , mismatch: 0, identity: 1.0

ttaccgtgagtgccgtttgggactaccagc	CRISPR spacer
ttaccgtgagtgccgtttgggactaccagc	Protospacer
******************************

12. spacer 3.6|2281958|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026508 (Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed3, complete sequence) position: , mismatch: 0, identity: 1.0

ttaccgtgagtgccgtttgggactaccagc	CRISPR spacer
ttaccgtgagtgccgtttgggactaccagc	Protospacer
******************************

13. spacer 3.13|2282420|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LS991422 (Lactobacillus casei isolate CECT 9104 plasmid 2) position: , mismatch: 0, identity: 1.0

gatgaagaagaactgacaaagatgatcaag	CRISPR spacer
gatgaagaagaactgacaaagatgatcaag	Protospacer
******************************

14. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029538 (Lactobacillus paracasei strain LC355 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.967

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagtagctcttcatgttt	Protospacer
***************.**************

15. spacer 3.9|2282156|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NC_012530 (Lactobacillus phage Lb338-1, complete genome) position: , mismatch: 1, identity: 0.967

tgttaatgctaatgaaattgccacaaaagt	CRISPR spacer
tgttaatgctaatgaaattgctacaaaagt	Protospacer
*********************.********

16. spacer 3.14|2282486|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 1, identity: 0.967

aagccggttagacgtgacatgcaagagctg	CRISPR spacer
aagccggttagacgcgacatgcaagagctg	Protospacer
**************.***************

17. spacer 3.14|2282486|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 1, identity: 0.967

aagccggttagacgtgacatgcaagagctg	CRISPR spacer
aagccggttagacgcgacatgcaagagctg	Protospacer
**************.***************

18. spacer 3.18|2282750|30|NZ_CP044228|CRISPRCasFinder,CRT matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 1, identity: 0.967

tagcttgtttgataatgaataggatcgcgt	CRISPR spacer
tagcttgtttgataatgaataggatcgcat	Protospacer
****************************.*

19. spacer 3.6|2281958|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012658 (Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK09, complete sequence) position: , mismatch: 2, identity: 0.933

ttaccgtgagtgccgtttgggactaccagc	CRISPR spacer
ttaccgtgagtgccgtttgggactaccaag	Protospacer
****************************.

20. spacer 3.13|2282420|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 2, identity: 0.933

gatgaagaagaactgacaaagatgatcaag	CRISPR spacer
gatgaagaagaactggaaaagatgatcaag	Protospacer
***************. *************

21. spacer 3.13|2282420|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 2, identity: 0.933

gatgaagaagaactgacaaagatgatcaag	CRISPR spacer
gatgaagaagaactggaaaagatgatcaag	Protospacer
***************. *************

22. spacer 3.13|2282420|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to AP018361 (Lactobacillus phage T25 DNA, complete genome) position: , mismatch: 2, identity: 0.933

gatgaagaagaactgacaaagatgatcaag	CRISPR spacer
gatgaagaagaactggcagagatgatcaag	Protospacer
***************.**.***********

23. spacer 3.13|2282420|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 2, identity: 0.933

gatgaagaagaactgacaaagatgatcaag	CRISPR spacer
gaagaagaagaactggcaaagatgatcaag	Protospacer
** ************.**************

24. spacer 3.13|2282420|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 2, identity: 0.933

gatgaagaagaactgacaaagatgatcaag	CRISPR spacer
gaagaagaagaactggcaaagatgatcaag	Protospacer
** ************.**************

25. spacer 3.18|2282750|30|NZ_CP044228|CRISPRCasFinder,CRT matches to NZ_LS991422 (Lactobacillus casei isolate CECT 9104 plasmid 2) position: , mismatch: 2, identity: 0.933

tagcttgtttgataatgaataggatcgcgt	CRISPR spacer
tggcttgtttgataatgaataggattgcgt	Protospacer
*.***********************.****

26. spacer 3.18|2282750|30|NZ_CP044228|CRISPRCasFinder,CRT matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 2, identity: 0.933

tagcttgtttgataatgaataggatcgcgt	CRISPR spacer
tggcttgtttgataatgaataggattgcgt	Protospacer
*.***********************.****

27. spacer 3.18|2282750|30|NZ_CP044228|CRISPRCasFinder,CRT matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 2, identity: 0.933

tagcttgtttgataatgaataggatcgcgt	CRISPR spacer
tggcttgtttgataatgaataggattgcgt	Protospacer
*.***********************.****

28. spacer 3.18|2282750|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 3, identity: 0.9

tagcttgtttgataatgaataggatcgcgt	CRISPR spacer
tggcttgtttgataataaataggattgcgt	Protospacer
*.**************.********.****

29. spacer 3.18|2282750|30|NZ_CP044228|CRISPRCasFinder,CRT matches to MN830258 (Lactobacillus phage JNU_P9, complete genome) position: , mismatch: 3, identity: 0.9

tagcttgtttgataatgaataggatcgcgt	CRISPR spacer
tggcttgcttgataataaataggatcgcgt	Protospacer
*.*****.********.*************

30. spacer 3.18|2282750|30|NZ_CP044228|CRISPRCasFinder,CRT matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 3, identity: 0.9

tagcttgtttgataatgaataggatcgcgt	CRISPR spacer
tggcttgtttgataataaataggattgcgt	Protospacer
*.**************.********.****

31. spacer 3.5|2281892|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012189 (Lactobacillus paracasei strain CAUH35 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.867

agtgcagctgatcgtcaatttcctgcaaaa	CRISPR spacer
agctgcgctgatcgtcaatttcctgcaaaa	Protospacer
**.   ************************

32. spacer 3.18|2282750|30|NZ_CP044228|CRISPRCasFinder,CRT matches to NC_007501 (Lactobacillus phage Lc-Nu, complete genome) position: , mismatch: 4, identity: 0.867

tagcttgtttgataatgaataggatcgcgt	CRISPR spacer
tgacttgtttgataatgaatacgattgcgt	Protospacer
*..****************** ***.****

33. spacer 3.18|2282750|30|NZ_CP044228|CRISPRCasFinder,CRT matches to AY131267 (Bacteriophage Lc-Nu, complete genome) position: , mismatch: 4, identity: 0.867

tagcttgtttgataatgaataggatcgcgt	CRISPR spacer
tgacttgtttgataatgaatacgattgcgt	Protospacer
*..****************** ***.****

34. spacer 3.9|2282156|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NC_009929 (Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence) position: , mismatch: 5, identity: 0.833

tgttaatgctaatgaaattgccacaaaagt	CRISPR spacer
gattaatgctaatgatattgccacaacagg	Protospacer
 .************* ********** **

35. spacer 3.2|2281694|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to MH617445 (Inoviridae sp. isolate ctcf2, complete genome) position: , mismatch: 6, identity: 0.8

ggctgggaccccggcgacgactgtatgagc	CRISPR spacer
ggctgggacggcggcgacgactggaaaggc	Protospacer
*********  ************ * ..**

36. spacer 3.7|2282024|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

ttgtaaacataataaaaacacctttctata	CRISPR spacer
ataaatacataatcaaatcacctttctata	Protospacer
 *. * ******* *** ************

37. spacer 3.11|2282288|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019064 (Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

taaatcagcgtgggcaagttgtttacacgg	CRISPR spacer
gaaatcatcgtgggcaagttgtttgaccgt	Protospacer
 ****** ****************.  **

38. spacer 3.13|2282420|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 6, identity: 0.8

gatgaagaagaactgacaaagatgatcaag	CRISPR spacer
aacgcagatgaactgacaaagatgatcatt	Protospacer
.*.* *** *******************

39. spacer 3.13|2282420|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

--gatgaagaagaactgacaaagatgatcaag	CRISPR spacer
ttgttg--caagaactgacaaaggtgatcacg	Protospacer
  * **   **************.****** *

40. spacer 3.5|2281892|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 7, identity: 0.767

agtgcagctgatcgtcaatttcctgcaaaa	CRISPR spacer
cgtgcagcagatcgtcaatctcctgctgtt	Protospacer
 ******* **********.****** .

41. spacer 3.5|2281892|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 7, identity: 0.767

agtgcagctgatcgtcaatttcctgcaaaa	CRISPR spacer
gacgcagctgaccggcaatttcctgccaga	Protospacer
...********.** *********** *.*

42. spacer 3.7|2282024|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgtaaacataataaaaacacctttctata	CRISPR spacer
ttttagacataataaaaacacctattaaat	Protospacer
** **.***************** *. *

43. spacer 3.7|2282024|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ttgtaaacataataaaaacacctttctata	CRISPR spacer
ttttagacataataaaaacacctattaaat	Protospacer
** **.***************** *. *

44. spacer 3.7|2282024|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgtaaacataataaaaacacctttctata	CRISPR spacer
ttttaaacataataaaagcacctagatttc	Protospacer
** **************.*****   * *

45. spacer 3.7|2282024|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgtaaacataataaaaacacctttctata	CRISPR spacer
ttttagacataataaaaacacctattaaat	Protospacer
** **.***************** *. *

46. spacer 3.7|2282024|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgtaaacataataaaaacacctttctata	CRISPR spacer
ttttagacataataaaaacacctattaaat	Protospacer
** **.***************** *. *

47. spacer 3.7|2282024|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgtaaacataataaaaacacctttctata	CRISPR spacer
tatcaaacagaaaaaaaacacctttctttc	Protospacer
*  .***** ** ************** *

48. spacer 3.7|2282024|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

ttgtaaacataataaaaacacctttctata	CRISPR spacer
ttttagacataataaaaacacctattaaat	Protospacer
** **.***************** *. *

49. spacer 3.9|2282156|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014570 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence) position: , mismatch: 7, identity: 0.767

tgttaatgctaatgaaattgccacaaaagt	CRISPR spacer
agttggatatagtgaaattgccacaaaagt	Protospacer
 ***..   **.******************

50. spacer 3.9|2282156|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to MN855617 (Myoviridae sp. isolate 527, complete genome) position: , mismatch: 7, identity: 0.767

tgttaatgctaatgaaattgcca-----caaaagt	CRISPR spacer
tgttaatgctaatgaactggccattttcca-----	Protospacer
**************** * ****     **

51. spacer 3.13|2282420|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NC_010901 (Lactococcus lactis plasmid pNP40, complete sequence) position: , mismatch: 7, identity: 0.767

gatgaagaagaactgacaaagatgatcaag	CRISPR spacer
gatgaagaagaactgataaagttgtttcca	Protospacer
****************.**** ** *.  .

52. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 7, identity: 0.767

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
cgccaaatcaaaaaacaacttgatattccg	Protospacer
 ** *******************  **..

53. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to MK448905 (Streptococcus phage Javan318, complete genome) position: , mismatch: 7, identity: 0.767

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaagagatg	Protospacer
**.********.************    *

54. spacer 3.5|2281892|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NC_013544 (Lactobacillus paracasei subsp. paracasei plasmid pCD02, complete sequence) position: , mismatch: 8, identity: 0.733

agtgcagctgatcgtcaatttcctgcaaaa	CRISPR spacer
gagctgactaatcgtcaatttcctgcaaaa	Protospacer
..  ...**.********************

55. spacer 3.8|2282090|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 8, identity: 0.733

tatagcccttgcaatcataaacaagtatat	CRISPR spacer
tatagcccttgcaaccataaaacttatcat	Protospacer
**************.******      .**

56. spacer 3.8|2282090|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

tatagcccttgcaatcataaacaagtatat	CRISPR spacer
tatagcccttgcaaccataaaacttatcat	Protospacer
**************.******      .**

57. spacer 3.13|2282420|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034684 (Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence) position: , mismatch: 8, identity: 0.733

gatgaagaagaactgacaaagatgatcaag	CRISPR spacer
aatgaagaagaaatgacaaagattgaaagc	Protospacer
.*********** ********** .  *.

58. spacer 3.18|2282750|30|NZ_CP044228|CRISPRCasFinder,CRT matches to NC_024214 (Lactococcus phage P162, complete genome) position: , mismatch: 8, identity: 0.733

tagcttgtttgataatgaataggatcgcgt	CRISPR spacer
tagcgtgtttgatgatgaataggcttaaag	Protospacer
**** ********.********* *.. .

59. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to NZ_CP011513 (Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agcgaaatcagaaaacaacttgagcaagag	Protospacer
***.******.************.*

60. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KX550065 (Streptococcus phage SpGS-1, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

61. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KY065502 (Streptococcus phage IPP66, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

62. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KY065479 (Streptococcus phage IPP39, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

63. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KY065455 (Streptococcus phage IPP14, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

64. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KY065487 (Streptococcus phage IPP48, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

65. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KY065501 (Streptococcus phage IPP65, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

66. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KY065493 (Streptococcus phage IPP55, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

67. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KY065491 (Streptococcus phage IPP53, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

68. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to DQ113772 (Streptococcus pneumoniae bacteriophage MM1 1998, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

69. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KY065490 (Streptococcus phage IPP52, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

70. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KY065492 (Streptococcus phage IPP54, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

71. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to AJ302074 (Streptococcus pneumoniae bacteriophage MM1 complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

72. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KT337346 (Streptococcus phage phiARI0285-2, partial genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

73. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to MG592603 (Vibrio phage 1.238.A._10N.261.52.F10, partial genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
atggaaatcaacaaacaacttgaaccagta	Protospacer
*  .******* *************.  *

74. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to MG592610 (Vibrio phage 1.245.O._10N.261.54.C7, partial genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
atggaaatcaacaaacaacttgaaccagta	Protospacer
*  .******* *************.  *

75. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to MG592604 (Vibrio phage 1.238.B._10N.261.52.F10, partial genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
atggaaatcaacaaacaacttgaaccagta	Protospacer
*  .******* *************.  *

76. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KT337348 (Streptococcus phage phiARI0378, partial genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

77. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KT337364 (Streptococcus phage phiARI0639b, partial genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

78. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to KT337358 (Streptococcus phage phiARI0468-4, complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

79. spacer 3.19|2282816|30|NZ_CP044228|CRISPRCasFinder,CRT matches to NC_022791 (Streptococcus phage phiBHN167 complete genome) position: , mismatch: 8, identity: 0.733

agcaaaatcaaaaaacaacttgaacttttt	CRISPR spacer
agtaaaatcaagaaacaacttgaggagatg	Protospacer
**.********.***********.    *

80. spacer 3.2|2281694|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NC_017081 (Phycisphaera mikurensis NBRC 102666 plasmid pPSMK1, complete sequence) position: , mismatch: 9, identity: 0.7

ggctgggaccccggcgacgactgtatgagc	CRISPR spacer
ctgcgggaccagggcgacgactgtatgttt	Protospacer
   .******  ***************  .

81. spacer 3.5|2281892|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012189 (Lactobacillus paracasei strain CAUH35 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

agtgcagctgatcgtcaatttcctgcaaaa	CRISPR spacer
agcgcagctgatcgtcaattttgtttgggg	Protospacer
**.******************. * .....

82. spacer 3.8|2282090|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to JX415535 (Escherichia phage ECBP1, complete genome) position: , mismatch: 9, identity: 0.7

tatagcccttgcaatcataaacaagtatat	CRISPR spacer
ctctcctcttgaaatcataaacaagtatgg	Protospacer
. .  *.**** ****************.

83. spacer 3.9|2282156|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to MN582103 (Podoviridae sp. cty5g4, complete genome) position: , mismatch: 9, identity: 0.7

tgttaatgctaatgaaattgccacaaaagt	CRISPR spacer
gacagttgctaatgaaattgtaacaaaagg	Protospacer
 .. . **************. *******

84. spacer 3.13|2282420|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to MH844558 (Exiguobacterium phage vB_EauM-23, complete genome) position: , mismatch: 9, identity: 0.7

gatgaagaagaactgacaaagatgatcaag	CRISPR spacer
acgcaagaagaactggcgaagatgatcggc	Protospacer
.   ***********.*.*********..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

321922 : 361649

Lactobacillus_phage(85.71%)

head,tail,terminase,portal,integrase,holin

attL 321602:321615|attR 361656:361669

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
321602:321615	attL	NA	NA	NA	NA
WP_014569502.1\|321922_323221_-	LysM peptidoglycan-binding domain-containing protein	B4XYQ9	Lactobacillus_phage	1.2e-232	99.1
WP_014569501.1\|323231_323645_-\|holin	phage holin	A0A0P0IDC6	Lactobacillus_phage	1.4e-43	97.9
WP_014569500.1\|323634_323928_-	hypothetical protein	B4XYQ7	Lactobacillus_phage	5.3e-45	94.8
WP_014569499.1\|323957_324089_-	XkdX family protein	A0A0P0HRS7	Lactobacillus_phage	2.5e-18	97.7
WP_005686996.1\|324081_324405_-	hypothetical protein	B4XYQ6	Lactobacillus_phage	1.1e-51	98.1
WP_087307829.1\|324414_326925_-\|tail	phage tail protein	B4XYQ5	Lactobacillus_phage	0.0e+00	82.6
WP_015764922.1\|326921_328910_-\|tail	phage tail protein	B4XYQ4	Lactobacillus_phage	0.0e+00	85.9
WP_014569496.1\|328912_332002_-	tape measure protein	A0A0P0IJD2	Lactobacillus_phage	1.4e-263	88.0
WP_015764921.1\|331994_332348_-	hypothetical protein	A0A0P0I7N9	Lactobacillus_phage	5.3e-55	96.6
WP_014569494.1\|332452_332785_-	hypothetical protein	A0A0P0IQQ6	Lactobacillus_phage	2.4e-49	94.5
WP_014569493.1\|332871_333474_-\|tail	phage tail protein	A0A0P0ID88	Lactobacillus_phage	2.4e-100	93.5
WP_014569492.1\|333485_333890_-	DUF3168 domain-containing protein	A0A0P0I3C8	Lactobacillus_phage	3.0e-70	98.5
WP_015764920.1\|333890_334256_-	HK97 gp10 family phage protein	A0A0P0IUZ3	Lactobacillus_phage	2.0e-57	96.7
WP_014569490.1\|334252_334555_-	hypothetical protein	A0A0P0HRN0	Lactobacillus_phage	6.3e-49	93.0
WP_014569489.1\|334559_334934_-\|head,tail	phage head-tail connector protein	A0A0P0IZF6	Lactobacillus_phage	3.2e-58	91.9
WP_014569488.1\|335161_336175_-	hypothetical protein	A0A0A7RVZ1	Clostridium_phage	3.1e-23	26.5
WP_014569487.1\|336190_336847_-	DUF4355 domain-containing protein	A0A0P0ID10	Lactobacillus_phage	4.3e-58	80.0
WP_014569486.1\|336971_337964_-	hypothetical protein	A0A0P0ID43	Lactobacillus_phage	6.2e-178	95.5
WP_014569485.1\|337929_339357_-\|portal	phage portal protein	A0A0P0IJV3	Lactobacillus_phage	2.7e-243	90.6
WP_029943635.1\|339361_340717_-\|terminase	PBSX family phage terminase large subunit	A4L7R3	Lactococcus_phage	4.9e-149	59.1
WP_014569483.1\|340694_341228_-\|terminase	terminase small subunit	A0A0P0IUY4	Lactobacillus_phage	2.7e-63	94.1
WP_015764918.1\|341264_341585_-	ribonucleoside-diphosphate reductase	A8YQN5	Lactobacillus_phage	9.0e-54	92.4
WP_014569481.1\|341577_342120_-	endonuclease	B4XYU1	Lactobacillus_phage	1.1e-107	100.0
WP_014569480.1\|342132_343281_-	hypothetical protein	B4XYU0	Lactobacillus_phage	2.4e-221	98.7
WP_005711378.1\|344308_344737_-	hypothetical protein	NA	NA	NA	NA
WP_101495025.1\|344954_345026_-	hypothetical protein	NA	NA	NA	NA
WP_029943634.1\|345031_345214_-	hypothetical protein	A0A0P0I365	Lactobacillus_phage	1.6e-15	61.7
WP_101495024.1\|345499_345865_-	hypothetical protein	C1KFE5	Lactobacillus_virus	3.2e-31	58.0
WP_014569478.1\|345858_346290_-	hypothetical protein	C1KFE8	Lactobacillus_virus	1.1e-49	69.9
WP_029943632.1\|346279_346483_-	hypothetical protein	NA	NA	NA	NA
WP_015764915.1\|346469_346649_-	hypothetical protein	NA	NA	NA	NA
WP_014569477.1\|346638_347145_-	DUF1642 domain-containing protein	Q8LTB6	Lactobacillus_phage	8.6e-59	72.9
WP_014569476.1\|347141_347327_-	hypothetical protein	Q6J1V0	Lactobacillus_phage	5.1e-25	88.5
WP_014569475.1\|347338_347803_-	hypothetical protein	A0A0P0IXF6	Lactobacillus_phage	7.2e-20	98.0
WP_014569474.1\|347815_348217_-	RusA family crossover junction endodeoxyribonuclease	A8YQM5	Lactobacillus_phage	2.6e-50	71.5
WP_014569473.1\|348213_348468_-	hypothetical protein	A0A0P0IQP0	Lactobacillus_phage	4.6e-37	94.0
WP_014569472.1\|348514_348964_-	hypothetical protein	B4XYT0	Lactobacillus_phage	6.2e-69	93.2
WP_015764330.1\|349333_349525_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014569471.1\|349521_349737_-	helix-turn-helix transcriptional regulator	A0A0P0IJY1	Lactobacillus_phage	6.1e-30	91.4
WP_014569470.1\|349754_350240_-	single-stranded DNA-binding protein	U5U726	Lactobacillus_phage	8.8e-61	86.3
WP_014569469.1\|350252_351209_-	DnaD domain protein	A0A1B0Y2R2	Lactobacillus_phage	2.0e-128	90.9
WP_014569468.1\|351224_351989_-	hypothetical protein	A0A0P0IZH9	Lactobacillus_phage	4.0e-76	54.0
WP_014569467.1\|352008_352884_-	recombinase RecT	A0A1X9I5N6	Streptococcus_phage	5.7e-58	52.2
WP_064460579.1\|352895_353099_-	hypothetical protein	A8YQL1	Lactobacillus_phage	2.5e-33	98.5
WP_014569466.1\|353091_353319_-	hypothetical protein	NA	NA	NA	NA
WP_015764912.1\|353462_353693_-	helix-turn-helix domain-containing protein	A0A1B0Y6A3	Lactobacillus_phage	5.5e-37	98.6
WP_014569463.1\|353671_354220_-	hypothetical protein	A0A1B0YE60	Lactobacillus_phage	1.0e-97	97.8
WP_014569461.1\|354531_354759_+	hypothetical protein	NA	NA	NA	NA
WP_029943629.1\|354755_355004_-	hypothetical protein	NA	NA	NA	NA
WP_014569460.1\|355000_355243_-	helix-turn-helix transcriptional regulator	A0A0P0HRP5	Lactobacillus_phage	4.6e-34	95.0
WP_003574523.1\|355377_355716_+	helix-turn-helix domain-containing protein	A0A0P0IZG9	Lactobacillus_phage	6.6e-55	98.2
WP_014569459.1\|355705_356128_+	toxin	A0A1B0YA58	Lactobacillus_phage	5.1e-73	93.5
WP_014569458.1\|356187_356889_+	DUF3862 domain-containing protein	A9D9J1	Lactobacillus_prophage	5.1e-25	39.3
WP_003606998.1\|356995_357751_+	hypothetical protein	NA	NA	NA	NA
WP_003606997.1\|357751_357973_-	hypothetical protein	NA	NA	NA	NA
WP_015764910.1\|358355_358781_+	pyridoxamine 5'-phosphate oxidase family protein	A0A0P0I7K6	Lactobacillus_phage	2.5e-59	94.3
WP_005716134.1\|358804_359008_+	hypothetical protein	A0A0P0IQK8	Lactobacillus_phage	8.6e-26	85.1
WP_014569456.1\|359118_360120_+	hypothetical protein	A0A1S5SA20	Streptococcus_phage	4.4e-06	23.3
WP_005716132.1\|360087_360294_-	hypothetical protein	NA	NA	NA	NA
WP_014569455.1\|360464_361649_+\|integrase	site-specific integrase	A0A0P0I3D2	Lactobacillus_phage	7.3e-226	99.2
361656:361669	attR	NA	NA	NA	NA

DBSCAN-SWA_2

411259 : 515433

104

Staphylococcus_phage(10.34%)

head,tail,capsid,terminase,portal,integrase,tRNA,transposase

attL 415270:415287|attR 493044:493061

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087307797.1\|411259_412050_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_150861195.1\|412196_412550_+	hypothetical protein	NA	NA	NA	NA
WP_039141214.1\|412623_413511_-	EamA family transporter	NA	NA	NA	NA
WP_150861196.1\|413639_414427_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_121496526.1\|414466_414808_-	galactokinase	NA	NA	NA	NA
WP_016382253.1\|415060_416941_+	beta-galactosidase large subunit / lactate large subunit	L0N6M2	Herpes_simplex_virus	2.2e-99	35.6
415270:415287	attL	NA	NA	NA	NA
WP_004559688.1\|416924_417884_+	beta-galactosidase	NA	NA	NA	NA
WP_087307797.1\|418280_419070_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014569430.1\|419920_420793_+	DegV family protein	NA	NA	NA	NA
WP_014569429.1\|421173_421629_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014569428.1\|421757_423656_-	M13 family metallopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	5.2e-56	27.0
WP_014569427.1\|423778_424654_+	hypothetical protein	NA	NA	NA	NA
WP_014569426.1\|424729_425545_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_029944032.1\|425621_426824_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	9.2e-59	36.2
WP_087307797.1\|427642_428432_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_150861197.1\|429198_430695_+\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_014569423.1\|433037_434969_-	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	2.4e-80	33.2
WP_070706617.1\|435671_437039_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	E4ZFI6	Streptococcus_phage	2.1e-120	50.6
WP_005713716.1\|437040_438075_-	diacylglycerol kinase	A0A1V0SBJ0	Catovirus	6.8e-18	28.8
WP_014569421.1\|438286_439717_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_014569420.1\|439718_441173_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_005710356.1\|441176_441473_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_005688838.1\|441524_442676_-	CamS family sex pheromone protein	NA	NA	NA	NA
WP_014569419.1\|442688_444713_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	1.6e-103	36.2
WP_014569418.1\|444760_447013_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.1e-137	42.0
WP_029943929.1\|447195_447300_+	hypothetical protein	NA	NA	NA	NA
WP_014569417.1\|447290_447422_+	hypothetical protein	NA	NA	NA	NA
WP_005710360.1\|447490_447811_+	DUF898 family protein	S5MNN8	Brevibacillus_phage	1.1e-14	67.3
WP_014569416.1\|447861_448647_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_014569415.1\|448650_449835_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA
WP_014569414.1\|449948_450131_+	hypothetical protein	NA	NA	NA	NA
WP_014569413.1\|450280_451588_+	Y-family DNA polymerase	M1Q231	Streptococcus_phage	5.1e-79	37.5
WP_005684616.1\|451580_451913_+	hypothetical protein	NA	NA	NA	NA
WP_005684614.1\|452103_452607_-	hypothetical protein	NA	NA	NA	NA
WP_005684613.1\|452631_453066_-	ACT domain-containing protein	NA	NA	NA	NA
WP_005684612.1\|453499_453694_+	hypothetical protein	NA	NA	NA	NA
WP_005716059.1\|453767_454301_-	N-acetyltransferase	NA	NA	NA	NA
WP_014569412.1\|454458_456000_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_014569411.1\|455996_456728_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-35	34.3
WP_015764896.1\|456744_457140_-	membrane protein	NA	NA	NA	NA
WP_005716056.1\|457850_458219_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_003568375.1\|458330_458579_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_003568371.1\|458594_458735_+	hypothetical protein	NA	NA	NA	NA
WP_013245616.1\|459475_459817_-\|head	phage head closure protein	I7AUE6	Enterococcus_phage	1.2e-08	38.4
WP_019728374.1\|459800_460091_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_005716052.1\|460146_461691_-\|capsid	phage major capsid protein	A0A2H4J9X8	uncultured_Caudovirales_phage	1.0e-33	31.3
WP_150861198.1\|461677_462862_-\|portal	phage portal protein	A0A2H4JB06	uncultured_Caudovirales_phage	5.3e-59	34.7
WP_013245613.1\|462866_463046_-	hypothetical protein	NA	NA	NA	NA
WP_150861199.1\|463011_464715_-\|terminase	terminase large subunit	A0A2H4JBN3	uncultured_Caudovirales_phage	1.1e-113	41.2
WP_003593553.1\|464711_465182_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_049168808.1\|465306_465732_-	HNH endonuclease	D2JLE2	Staphylococcus_phage	4.2e-14	41.4
WP_005716049.1\|465763_466105_-	hypothetical protein	NA	NA	NA	NA
WP_005717772.1\|466456_467848_-	hypothetical protein	A0A0M4RE09	Enterococcus_phage	1.5e-41	32.8
WP_032954482.1\|467840_468668_-	DNA replication protein	A0A1B3B066	Gordonia_phage	7.3e-15	28.1
WP_005716042.1\|468651_468840_-	hypothetical protein	NA	NA	NA	NA
WP_005716040.1\|468836_469112_-	hypothetical protein	NA	NA	NA	NA
WP_005716038.1\|469156_469348_-	hypothetical protein	NA	NA	NA	NA
WP_005716036.1\|469458_469680_-	hypothetical protein	NA	NA	NA	NA
WP_005716035.1\|469747_470026_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_150861200.1\|470154_470808_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005716031.1\|470901_472050_+\|integrase	site-specific integrase	A0A097BYJ7	Leuconostoc_phage	1.0e-30	28.9
WP_150861201.1\|472716_475011_-	alpha-galactosidase	NA	NA	NA	NA
WP_070706609.1\|475234_476107_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_070706611.1\|476103_477060_-	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_070706613.1\|477060_477900_-	glycosyl transferase	NA	NA	NA	NA
WP_070706615.1\|477896_478661_-	acyl-phosphate glycerol 3-phosphate acyltransferase	NA	NA	NA	NA
WP_005684599.1\|478692_480057_-	amino acid permease	NA	NA	NA	NA
WP_005684598.1\|480271_480727_-	hypothetical protein	NA	NA	NA	NA
WP_005684597.1\|480995_482009_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_076638917.1\|481998_482277_-	ATP-dependent nuclease subunit B	NA	NA	NA	NA
WP_005688791.1\|482433_482757_-	hypothetical protein	NA	NA	NA	NA
WP_014569400.1\|482753_483221_-	hypothetical protein	NA	NA	NA	NA
WP_029943925.1\|483180_483492_-	hypothetical protein	NA	NA	NA	NA
WP_014569399.1\|483461_483884_-	type II secretion system protein	NA	NA	NA	NA
WP_014569398.1\|483880_484201_-	type II secretion system protein	NA	NA	NA	NA
WP_070707058.1\|484203_485157_-	type II secretion system protein F	NA	NA	NA	NA
WP_014569396.1\|485153_486023_-	AAA family ATPase	NA	NA	NA	NA
WP_005684587.1\|486398_487130_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_005716007.1\|487200_487692_-	VanZ family protein	NA	NA	NA	NA
WP_014569395.1\|487765_489571_+	M3 family oligoendopeptidase	NA	NA	NA	NA
WP_005716005.1\|489720_491532_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1GV45	Paramecium_bursaria_Chlorella_virus	6.8e-90	38.0
WP_064532784.1\|491829_492030_-	hypothetical protein	NA	NA	NA	NA
WP_014569394.1\|492298_493663_-	phosphoglucosamine mutase	NA	NA	NA	NA
493044:493061	attR	NA	NA	NA	NA
WP_014569393.1\|493675_494815_-	hypothetical protein	NA	NA	NA	NA
WP_005684581.1\|494811_495669_-	TIGR00159 family protein	NA	NA	NA	NA
WP_014569392.1\|495929_496664_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.7e-26	32.4
WP_014569391.1\|496653_497793_+	ABC transporter permease	NA	NA	NA	NA
WP_014569390.1\|497826_498507_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_150861202.1\|498582_501375_+	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	2.0e-72	29.4
WP_014569388.1\|501566_501758_-	hypothetical protein	NA	NA	NA	NA
WP_005688760.1\|502079_502445_+	hypothetical protein	A0A0P0I7G8	Lactobacillus_phage	3.9e-45	77.8
WP_014569387.1\|502472_503045_+	DUF5067 domain-containing protein	Q6SEF8	Lactobacillus_prophage	1.6e-29	48.1
WP_005684572.1\|503255_504329_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005684571.1\|504312_505146_-	ABC transporter permease	NA	NA	NA	NA
WP_005684570.1\|505135_505960_-	ABC transporter permease	Q6GZ02	Mycoplasma_phage	8.9e-13	26.7
WP_005688752.1\|506053_507142_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.4e-37	46.0
WP_005684568.1\|507155_507695_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014569386.1\|507918_510033_-	sodium:proton antiporter	NA	NA	NA	NA
WP_014569385.1\|510069_510933_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_015764893.1\|511114_511873_+	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	1.1e-60	48.1
WP_014569383.1\|511884_512427_+	exonuclease	A0A1S5SFA9	Streptococcus_phage	8.2e-23	41.0
WP_150861203.1\|512614_513874_-	ABC transporter permease	NA	NA	NA	NA
WP_070707056.1\|513866_514763_-	ABC transporter ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	2.5e-08	26.6
WP_005684560.1\|514968_515433_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA

DBSCAN-SWA_3

545707 : 555126

Streptococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_124781881.1\|545707_546601_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.1e-37	33.7
WP_005684526.1\|546670_547261_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	8.3e-53	52.3
WP_005684525.1\|547380_547836_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_014569373.1\|548126_549074_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	1.7e-55	41.0
WP_014569372.1\|549078_550107_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	3.0e-90	51.7
WP_005684522.1\|550103_550991_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.4e-08	31.4
WP_014569371.1\|551085_551247_+	hypothetical protein	NA	NA	NA	NA
WP_076638769.1\|551212_551350_+	Malolactic regulator	NA	NA	NA	NA
WP_076638768.1\|551315_551483_+	IMP cyclohydrolase	NA	NA	NA	NA
WP_014569370.1\|551490_552030_-	membrane protein	NA	NA	NA	NA
WP_049173125.1\|552231_555126_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-305	56.0

DBSCAN-SWA_4

1283534 : 1319859

Bacillus_virus(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014569018.1\|1283534_1285031_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_005687428.1\|1285134_1286838_+	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA
WP_005687427.1\|1286922_1287702_+	ABC transporter permease	NA	NA	NA	NA
WP_005687426.1\|1287711_1288698_+	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005687425.1\|1288707_1289439_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-27	32.1
WP_005687424.1\|1289946_1290387_-	hypothetical protein	NA	NA	NA	NA
WP_029943900.1\|1290364_1290709_-	hypothetical protein	NA	NA	NA	NA
WP_005687423.1\|1290751_1291075_-	sulfur reduction protein DsrE	NA	NA	NA	NA
WP_005687419.1\|1291210_1292668_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.1e-40	29.3
WP_005687418.1\|1292861_1293212_+	YisL family protein	NA	NA	NA	NA
WP_005687417.1\|1293253_1293622_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_005687416.1\|1293667_1293964_+	hypothetical protein	NA	NA	NA	NA
WP_087307804.1\|1294036_1294804_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_049173404.1\|1294998_1296435_-	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	1.2e-33	26.3
WP_150861234.1\|1296480_1297845_-	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA
WP_005687412.1\|1297867_1298362_-	hypothetical protein	NA	NA	NA	NA
WP_005687411.1\|1298381_1298705_-	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_005687410.1\|1298714_1299029_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_005687409.1\|1299309_1300311_-	D-2-hydroxyacid dehydrogenase	M1HFV8	Paramecium_bursaria_Chlorella_virus	1.2e-40	31.8
WP_005687408.1\|1300416_1300908_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	7.4e-15	35.3
WP_005687407.1\|1301111_1301786_+	response regulator transcription factor	W8CYM9	Bacillus_phage	6.6e-38	39.4
WP_070706490.1\|1301782_1302850_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_005687405.1\|1302976_1303483_+	hypothetical protein	NA	NA	NA	NA
WP_095691935.1\|1303574_1304362_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012491083.1\|1304695_1304968_-	hypothetical protein	NA	NA	NA	NA
WP_005688285.1\|1305027_1307832_-	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	4.5e-72	27.5
WP_121497133.1\|1308171_1308291_+\|transposase	transposase	NA	NA	NA	NA
WP_032961985.1\|1308373_1309057_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	3.1e-59	51.3
WP_150861235.1\|1309374_1310871_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_048516665.1\|1311478_1312870_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_005688248.1\|1312887_1313532_+	hypothetical protein	NA	NA	NA	NA
WP_005710972.1\|1313961_1314228_-	hypothetical protein	NA	NA	NA	NA
WP_014568966.1\|1314517_1315600_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_005688240.1\|1315729_1315981_-	hypothetical protein	NA	NA	NA	NA
WP_005688238.1\|1316237_1317314_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_005688236.1\|1317414_1318395_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_014568965.1\|1318920_1319859_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1818153 : 1873907

Klosneuvirus(15.38%)

integrase,protease,transposase,tRNA

attL 1842870:1842884|attR 1860788:1860802

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005713450.1\|1818153_1820136_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	3.5e-95	37.3
WP_005690997.1\|1820194_1820641_-	hypothetical protein	NA	NA	NA	NA
WP_005685226.1\|1820691_1820904_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	1.8e-05	40.9
WP_005713448.1\|1821068_1822982_-	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	2.1e-20	30.0
WP_150861260.1\|1822968_1824795_-	ABC transporter ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	8.3e-19	31.1
WP_005713443.1\|1824848_1825760_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_005713442.1\|1825746_1826451_-	response regulator transcription factor	NA	NA	NA	NA
WP_005714124.1\|1826586_1827468_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_083313391.1\|1827566_1827710_+	acetyltransferase	NA	NA	NA	NA
WP_077069940.1\|1827706_1827865_+	ATP-dependent nuclease subunit B	NA	NA	NA	NA
WP_150861261.1\|1827887_1828886_-	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA
WP_005714122.1\|1829100_1829592_+	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_005713432.1\|1829598_1830378_+	TatD family deoxyribonuclease	NA	NA	NA	NA
WP_005685238.1\|1830374_1830944_+	ribonuclease M5	NA	NA	NA	NA
WP_141756138.1\|1830930_1831821_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_076638875.1\|1831862_1831988_+	Malolactic regulator	NA	NA	NA	NA
WP_076638873.1\|1831947_1832100_+	acetyltransferase	NA	NA	NA	NA
WP_005685240.1\|1832166_1832418_+	hypothetical protein	NA	NA	NA	NA
WP_005685241.1\|1832663_1833542_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_005685242.1\|1833597_1834476_+	cation transporter	NA	NA	NA	NA
WP_005685244.1\|1834571_1835333_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_005685245.1\|1835329_1835980_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.1e-16	32.2
WP_005685246.1\|1836201_1837050_+	pur operon repressor	A0A1V0SKE5	Klosneuvirus	1.1e-05	26.4
WP_005685247.1\|1837046_1838252_+	glycopeptide antibiotics resistance protein	NA	NA	NA	NA
WP_076638876.1\|1838384_1838525_+	Malolactic regulator	NA	NA	NA	NA
WP_087307855.1\|1838490_1838595_+	Malolactic regulator	NA	NA	NA	NA
WP_005685248.1\|1838775_1840164_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L140	Tupanvirus	1.5e-28	33.6
WP_005691037.1\|1840261_1841236_+	ribose-phosphate diphosphokinase	A0A2K9L8D8	Tupanvirus	2.0e-43	36.1
WP_005685250.1\|1841332_1841662_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_014570138.1\|1841750_1842191_+	hypothetical protein	NA	NA	NA	NA
WP_005685253.1\|1842336_1842717_-	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_005685254.1\|1842779_1843838_-	membrane protein	NA	NA	NA	NA
1842870:1842884	attL	NA	NA	NA	NA
WP_005685256.1\|1843909_1844362_+	NUDIX hydrolase	NA	NA	NA	NA
WP_005685257.1\|1844373_1845726_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	3.5e-30	32.5
WP_005685259.1\|1845715_1846564_-	lipoate--protein ligase A	NA	NA	NA	NA
WP_015765067.1\|1846710_1846863_+	hypothetical protein	NA	NA	NA	NA
WP_005685261.1\|1846902_1847349_+	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_005685262.1\|1847401_1848073_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
WP_005685263.1\|1848299_1849175_+	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_005685264.1\|1849424_1849781_+	hypothetical protein	NA	NA	NA	NA
WP_005685265.1\|1849820_1850165_+	hypothetical protein	NA	NA	NA	NA
WP_005685266.1\|1850265_1851453_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_032961799.1\|1851818_1853276_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_032961799.1\|1853472_1854930_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_005686647.1\|1855193_1856798_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	7.1e-139	48.8
WP_031546130.1\|1856977_1857211_+	hypothetical protein	NA	NA	NA	NA
WP_005686643.1\|1857288_1858548_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_005691061.1\|1858644_1858896_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_049173473.1\|1859026_1860289_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010490992.1\|1860340_1860613_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_019899265.1\|1860962_1861220_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
1860788:1860802	attR	NA	NA	NA	NA
WP_031546141.1\|1861240_1861639_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_002816285.1\|1863569_1863821_+\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	9.2e-38	96.4
WP_031546164.1\|1865190_1865601_+	hypothetical protein	NA	NA	NA	NA
WP_010491013.1\|1867865_1868081_+	hypothetical protein	NA	NA	NA	NA
WP_031546167.1\|1868084_1869209_+	hypothetical protein	NA	NA	NA	NA
WP_021353390.1\|1869363_1869453_-	hypothetical protein	NA	NA	NA	NA
WP_002816607.1\|1870014_1870698_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.1e-60	51.8
WP_077069601.1\|1871684_1871786_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_032962056.1\|1871792_1873907_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	1.4e-118	39.0

DBSCAN-SWA_6

1899257 : 1907579

Streptococcus_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031546577.1\|1899257_1901723_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	64.4
WP_010491186.1\|1901706_1902099_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	6.5e-46	73.6
WP_031546580.1\|1902160_1902658_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-35	45.2
WP_003606383.1\|1902661_1902883_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	1.7e-27	83.6
WP_031546582.1\|1902981_1903716_-	site-specific DNA-methyltransferase	A0A2K8IKC3	Lactococcus_phage	1.1e-67	53.6
WP_031546584.1\|1903846_1904173_-	hypothetical protein	NA	NA	NA	NA
WP_150861262.1\|1904162_1905353_-	helix-turn-helix domain-containing protein	A0A1S5SEX3	Streptococcus_phage	1.3e-92	43.2
WP_031546588.1\|1905668_1905929_-	hypothetical protein	NA	NA	NA	NA
WP_010491202.1\|1905925_1906201_-	hypothetical protein	NA	NA	NA	NA
WP_031546590.1\|1906211_1907579_-	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	5.2e-151	61.3

DBSCAN-SWA_7

2002548 : 2112327

106

Bacillus_phage(26.67%)

protease,bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014568964.1\|2002548_2003952_+\|transposase	ISLre2-like element ISLrh4 family transposase	NA	NA	NA	NA
WP_005686771.1\|2004140_2004587_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_003567483.1\|2004600_2004993_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_033572395.1\|2005114_2005651_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_107755086.1\|2005602_2006496_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-37	33.7
WP_005687781.1\|2006868_2008053_+	MFS transporter	NA	NA	NA	NA
WP_005687783.1\|2008277_2010068_+	ABC transporter ATP-binding protein	F2Y1V6	Organic_Lake_phycodnavirus	8.2e-11	26.0
WP_005687784.1\|2010054_2011890_+	ABC transporter ATP-binding protein	F2Y1V6	Organic_Lake_phycodnavirus	3.3e-07	25.2
WP_077069934.1\|2012122_2012395_-	ATP-dependent nuclease subunit B	NA	NA	NA	NA
WP_005687786.1\|2012576_2013245_+	hypothetical protein	NA	NA	NA	NA
WP_031546856.1\|2013485_2014304_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_005687789.1\|2014296_2014998_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.1e-30	39.4
WP_005687791.1\|2014994_2016236_+	acyltransferase	NA	NA	NA	NA
WP_150861263.1\|2016186_2017719_+	AMP-binding protein	Q75ZG1	Hepacivirus	7.4e-29	28.8
WP_005687795.1\|2017708_2018683_+	aliphatic sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005687797.1\|2018890_2021614_-	Bacterial alpha-L-rhamnosidase	NA	NA	NA	NA
WP_005687799.1\|2022251_2023766_+	MFS transporter	NA	NA	NA	NA
WP_005687801.1\|2024269_2024680_+	CrcB family protein	NA	NA	NA	NA
WP_005687803.1\|2024673_2025033_+	CrcB family protein	A0A2H4J148	uncultured_Caudovirales_phage	3.5e-06	39.1
WP_005687805.1\|2025180_2025471_-	hypothetical protein	NA	NA	NA	NA
WP_077069585.1\|2027146_2029615_+	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA
WP_005686787.1\|2030256_2030406_-	hypothetical protein	NA	NA	NA	NA
WP_005686788.1\|2030600_2031503_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005714580.1\|2031843_2032353_+	hypothetical protein	NA	NA	NA	NA
WP_005686792.1\|2032480_2033122_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_077069933.1\|2033193_2033352_+	ATP-dependent nuclease subunit B	NA	NA	NA	NA
WP_005686794.1\|2033614_2034532_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005686796.1\|2034729_2034849_+	hypothetical protein	NA	NA	NA	NA
WP_005686799.1\|2034933_2035203_+	30S ribosomal protein S14	NA	NA	NA	NA
WP_005686802.1\|2035542_2036286_+	metal ABC transporter ATP-binding protein	W5SAS9	Pithovirus	5.2e-12	26.6
WP_150861264.1\|2036282_2037176_+	metal ABC transporter permease	NA	NA	NA	NA
WP_005686806.1\|2037172_2038114_+	manganese ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005686809.1\|2038204_2038537_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005686811.1\|2038656_2039265_-	cation transporter	NA	NA	NA	NA
WP_005692195.1\|2039411_2039606_-	hypothetical protein	NA	NA	NA	NA
WP_005686815.1\|2039709_2041239_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_005686817.1\|2041272_2042643_+	MFS transporter	NA	NA	NA	NA
WP_005686819.1\|2042957_2043323_-	hypothetical protein	NA	NA	NA	NA
WP_005686820.1\|2043611_2046329_-	HAD-IC family P-type ATPase	M1HJQ2	Paramecium_bursaria_Chlorella_virus	1.9e-59	27.5
WP_099981497.1\|2046758_2048336_+	divalent metal cation transporter	NA	NA	NA	NA
WP_005686824.1\|2048319_2048457_+	hypothetical protein	NA	NA	NA	NA
WP_077069583.1\|2048434_2048659_-	alpha-galactosidase	NA	NA	NA	NA
WP_031546833.1\|2048618_2048810_-	hypothetical protein	NA	NA	NA	NA
WP_005686826.1\|2048982_2049726_+	hypothetical protein	NA	NA	NA	NA
WP_005686828.1\|2049901_2051281_+	class II fumarate hydratase	NA	NA	NA	NA
WP_005686829.1\|2051330_2051648_+	SHOCT domain-containing protein	NA	NA	NA	NA
WP_005686831.1\|2051672_2052818_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_005686833.1\|2052847_2053582_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_083313382.1\|2053907_2054066_+	alpha-galactosidase	NA	NA	NA	NA
WP_005686835.1\|2054173_2055127_+	aldo/keto reductase	NA	NA	NA	NA
WP_005686837.1\|2055301_2055643_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005686839.1\|2055933_2056266_+	hypothetical protein	NA	NA	NA	NA
WP_005686841.1\|2056438_2057866_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	6.1e-33	26.7
WP_005686843.1\|2057920_2058361_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_150861265.1\|2058681_2059488_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_005686847.1\|2059537_2059723_+	hypothetical protein	NA	NA	NA	NA
WP_005686849.1\|2060108_2060294_+	hypothetical protein	NA	NA	NA	NA
WP_005686851.1\|2060353_2060539_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_005686853.1\|2060626_2060854_-	hypothetical protein	NA	NA	NA	NA
WP_005686855.1\|2061007_2061166_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_150861266.1\|2061343_2061643_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005686864.1\|2061892_2062138_+	hypothetical protein	NA	NA	NA	NA
WP_014569018.1\|2062540_2064037_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_077069578.1\|2064243_2064426_+	hypothetical protein	NA	NA	NA	NA
WP_133065326.1\|2064429_2064672_+	hypothetical protein	NA	NA	NA	NA
WP_005686865.1\|2064832_2065609_-	LytR domain-containing response regulator	NA	NA	NA	NA
WP_005686867.1\|2065613_2066909_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_005686870.1\|2067523_2069716_+	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	2.8e-37	25.5
WP_005686874.1\|2071169_2071580_+	hypothetical protein	NA	NA	NA	NA
WP_005686876.1\|2071759_2073115_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_150861267.1\|2073210_2073747_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_107755086.1\|2073698_2074592_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-37	33.7
WP_032952450.1\|2074687_2074867_+	hypothetical protein	NA	NA	NA	NA
WP_005687851.1\|2076102_2076393_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005687853.1\|2077239_2078025_-	hypothetical protein	NA	NA	NA	NA
WP_005687855.1\|2078021_2078354_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_005687856.1\|2078484_2079135_-	helix-turn-helix transcriptional regulator	B5LPU3	Bacillus_virus	3.4e-07	42.3
WP_087307797.1\|2079590_2080381_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_005687860.1\|2081549_2082758_+	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_005687861.1\|2082926_2083484_+	hypothetical protein	NA	NA	NA	NA
WP_005687863.1\|2083779_2086710_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_150861268.1\|2086711_2088067_+	pilus assembly protein	NA	NA	NA	NA
WP_150861269.1\|2088057_2089611_+	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA
WP_005687869.1\|2089617_2090442_+	class C sortase	NA	NA	NA	NA
WP_005687870.1\|2090670_2091213_+	hypothetical protein	NA	NA	NA	NA
WP_124781881.1\|2091340_2092234_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.1e-37	33.7
WP_033572395.1\|2092185_2092722_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005709747.1\|2093261_2093447_+	hypothetical protein	NA	NA	NA	NA
WP_150861270.1\|2093492_2093657_+	hypothetical protein	NA	NA	NA	NA
WP_014568964.1\|2093753_2095157_+\|transposase	ISLre2-like element ISLrh4 family transposase	NA	NA	NA	NA
WP_005709745.1\|2095481_2096318_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	9.6e-47	41.9
WP_005709743.1\|2096398_2097655_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	7.8e-109	55.6
WP_005714547.1\|2097726_2098959_-	MFS transporter	NA	NA	NA	NA
WP_005714546.1\|2099649_2099904_+	hypothetical protein	NA	NA	NA	NA
WP_005686086.1\|2100103_2100310_+	hypothetical protein	NA	NA	NA	NA
WP_005686089.1\|2100499_2100757_+	hypothetical protein	NA	NA	NA	NA
WP_005714545.1\|2100956_2102135_-	sugar diacid utilization regulator	NA	NA	NA	NA
WP_005709732.1\|2102262_2103480_+	MFS transporter	NA	NA	NA	NA
WP_070463027.1\|2103472_2104216_+	nucleoside phosphorylase	NA	NA	NA	NA
WP_150861271.1\|2104243_2105422_+	MFS transporter	NA	NA	NA	NA
WP_014569018.1\|2105423_2106920_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_005709728.1\|2107050_2108241_+	phosphopentomutase	NA	NA	NA	NA
WP_005686092.1\|2108368_2108578_+	CsbD family protein	NA	NA	NA	NA
WP_005692305.1\|2108740_2109856_+	L-lactate oxidase	NA	NA	NA	NA
WP_005686095.1\|2110101_2110386_-	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_014569018.1\|2110830_2112327_+\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

2531948 : 2550968

Bacillus_phage(50.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014569018.1\|2531948_2533445_+\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_005687340.1\|2534110_2535109_+	hypothetical protein	NA	NA	NA	NA
WP_005687341.1\|2535123_2535666_+	hypothetical protein	NA	NA	NA	NA
WP_014569818.1\|2537518_2537647_-	hypothetical protein	NA	NA	NA	NA
WP_150861306.1\|2537607_2537871_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_014569018.1\|2537984_2539481_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_107755086.1\|2539856_2540750_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-37	33.7
WP_014569708.1\|2540701_2541238_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005685952.1\|2541434_2541746_+	hypothetical protein	NA	NA	NA	NA
WP_076638878.1\|2541882_2542611_-\|transposase	transposase	NA	NA	NA	NA
WP_077069472.1\|2542627_2543119_-\|transposase	transposase	NA	NA	NA	NA
WP_005685958.1\|2543106_2544693_-	reverse transcriptase	NA	NA	NA	NA
WP_005685962.1\|2545369_2545696_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_150861307.1\|2546352_2549955_+	peptidoglycan-binding protein LysM	NA	NA	NA	NA
WP_005685966.1\|2550209_2550968_-\|protease	matrixin family metalloprotease	G9I094	Helicoverpa_zea_nudivirus	2.2e-05	54.3

DBSCAN-SWA_9

2892056 : 2948839

Bacillus_phage(30.77%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107755086.1\|2892056_2892950_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-37	33.7
WP_014569708.1\|2892901_2893438_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005684322.1\|2893825_2894578_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	2.8e-21	40.4
WP_005684321.1\|2894613_2895402_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_005684320.1\|2895418_2896660_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_005684319.1\|2896683_2898414_+\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	4.8e-08	29.1
WP_014569707.1\|2898535_2902870_+	PolC-type DNA polymerase III	A0A0A7RWA3	Clostridium_phage	1.8e-19	34.6
WP_005684317.1\|2903124_2903604_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_005684315.1\|2903620_2904829_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_005684314.1\|2904840_2905134_+	YlxR family protein	NA	NA	NA	NA
WP_005684313.1\|2905136_2905436_+	YlxQ-related RNA-binding protein	NA	NA	NA	NA
WP_005684312.1\|2905456_2908255_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	7.5e-19	40.0
WP_150861317.1\|2908174_2908369_-	hypothetical protein	NA	NA	NA	NA
WP_080981376.1\|2908345_2908549_+	hypothetical protein	NA	NA	NA	NA
WP_080565100.1\|2908542_2908707_+	alpha-galactosidase	NA	NA	NA	NA
WP_003565780.1\|2908681_2909035_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_014569706.1\|2909292_2909964_+	DUF475 domain-containing protein	S5MAL1	Bacillus_phage	9.8e-34	45.5
WP_014569705.1\|2910039_2910945_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_005684300.1\|2910952_2911900_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA
WP_005684298.1\|2911901_2913047_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_070706624.1\|2913205_2914252_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_005684296.1\|2914321_2914915_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_005684295.1\|2914944_2916804_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.2e-139	52.4
WP_087307871.1\|2916815_2916902_+	hypothetical protein	NA	NA	NA	NA
WP_005684294.1\|2916916_2918077_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	8.7e-22	26.6
WP_005684293.1\|2918349_2920188_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	3.1e-21	25.1
WP_005684291.1\|2920394_2920613_-	hypothetical protein	NA	NA	NA	NA
WP_005684290.1\|2920618_2921095_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_005684289.1\|2921299_2921671_-	hypothetical protein	NA	NA	NA	NA
WP_005684288.1\|2921985_2924280_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	6.7e-74	31.6
WP_005684287.1\|2924276_2924804_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.6e-23	40.0
WP_005684286.1\|2924882_2925383_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_005684285.1\|2925398_2925716_+	DUF960 domain-containing protein	NA	NA	NA	NA
WP_005684282.1\|2925884_2926679_+	N-formylglutamate amidohydrolase	NA	NA	NA	NA
WP_005684281.1\|2926853_2927864_+	hypothetical protein	NA	NA	NA	NA
WP_014569018.1\|2928055_2929552_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_005687689.1\|2929832_2930390_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005687688.1\|2930392_2930983_+	NAD(P)H dehydrogenase	NA	NA	NA	NA
WP_049173427.1\|2931218_2931701_-	hypothetical protein	NA	NA	NA	NA
WP_150861318.1\|2931697_2932183_-	hypothetical protein	NA	NA	NA	NA
WP_049173429.1\|2932608_2932833_-	DUF3173 domain-containing protein	NA	NA	NA	NA
WP_049173430.1\|2933015_2933213_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_049173431.1\|2933622_2934408_+	hypothetical protein	NA	NA	NA	NA
WP_150861319.1\|2934404_2935559_+\|protease	ATP-dependent Clp protease ATP-binding subunit	NA	NA	NA	NA
WP_033572982.1\|2936026_2936413_+	hypothetical protein	NA	NA	NA	NA
WP_005687686.1\|2936412_2936592_+	hypothetical protein	NA	NA	NA	NA
WP_070706779.1\|2936954_2937341_+	YxeA family protein	NA	NA	NA	NA
WP_005687684.1\|2937409_2937658_-	hypothetical protein	NA	NA	NA	NA
WP_005687683.1\|2937763_2938369_+	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_005687682.1\|2938365_2938860_+	DUF3013 family protein	NA	NA	NA	NA
WP_005687681.1\|2938940_2939885_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_014569694.1\|2939923_2940652_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_005687679.1\|2940689_2941013_+	hypothetical protein	NA	NA	NA	NA
WP_005687678.1\|2941317_2943543_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	J9Q7H7	Salmonella_phage	3.1e-07	35.1
WP_087307797.1\|2943720_2944510_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_005687677.1\|2944544_2944991_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_005687676.1\|2944990_2945617_+	HAD hydrolase-like protein	NA	NA	NA	NA
WP_005687675.1\|2945718_2947041_-	SH3 domain-containing protein	J9PV86	Bacillus_phage	3.0e-10	30.2
WP_005687674.1\|2947128_2947575_-	hypothetical protein	NA	NA	NA	NA
WP_087307797.1\|2948048_2948839_-\|transposase	IS5 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP044228.1|WP_005692195.1|2039411_2039606_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP044228.1|WP_005692195.1|2039411_2039606_-|hypothetical-protein

2039411_2039606_-

64 aa aa

2002548-2112327

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP044228_3	TypeII	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	2111677-2111706
NZ_CP044228_3	TypeII	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	2063191-2063162
NZ_CP044228_3	TypeII	3.3\|2281760\|30\|NZ_CP044228\|PILER-CR,CRISPRCasFinder,CRT	2281760-2281789	30	2106074-2106045

1. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044228 position: 2111677-2111706, mismatch: 0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

2. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044228 position: 2063191-2063162, mismatch: 0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

3. spacer 3.3|2281760|30|NZ_CP044228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044228 position: 2106074-2106045, mismatch: 0

caagtctatgagcagcagctcttcatgttt	CRISPR spacer
caagtctatgagcagcagctcttcatgttt	Protospacer
******************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044228

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information