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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP031608 Xanthomonas hortorum strain VT106 plasmid pVT106, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP031607 Xanthomonas hortorum strain VT106 chromosome, complete genome 8 crisprs RT,WYL,cas3,DinG,csa3,DEDDh 2 4 6 0

Results visualization

1. NZ_CP031607
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031607_1 672452-673201 Orphan NA
15 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031607_2 826051-826181 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031607_3 2233453-2233525 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031607_4 2473280-2473387 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031607_5 2865035-2865175 Unclear NA
1 spacers
cas3,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031607_6 4074980-4075105 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031607_7 4075253-4075401 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP031607_8 4343805-4343887 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP031607_1 1.10|672914|18|NZ_CP031607|CRT 672914-672931 18 NZ_CP031607.1 3510310-3510327 1 0.944
NZ_CP031607_1 1.10|672914|18|NZ_CP031607|CRT 672914-672931 18 NZ_CP031607.1 738045-738062 1 0.944
NZ_CP031607_1 1.10|672914|18|NZ_CP031607|CRT 672914-672931 18 NZ_CP031607.1 5074355-5074372 1 0.944
NZ_CP031607_1 1.13|673058|18|NZ_CP031607|CRT 673058-673075 18 NZ_CP031607.1 3586101-3586118 1 0.944

1. spacer 1.10|672914|18|NZ_CP031607|CRT matches to position: 3510310-3510327, mismatch: 1, identity: 0.944

ctgaccgcgctggaaaac	CRISPR spacer
ctgaccgcgctggagaac	Protospacer
**************.***

2. spacer 1.10|672914|18|NZ_CP031607|CRT matches to position: 738045-738062, mismatch: 1, identity: 0.944

ctgaccgcgctggaaaac	CRISPR spacer
ctgaccgcgctggaatac	Protospacer
*************** **

3. spacer 1.10|672914|18|NZ_CP031607|CRT matches to position: 5074355-5074372, mismatch: 1, identity: 0.944

ctgaccgcgctggaaaac	CRISPR spacer
ctgaccgcgctggagaac	Protospacer
**************.***

4. spacer 1.13|673058|18|NZ_CP031607|CRT matches to position: 3586101-3586118, mismatch: 1, identity: 0.944

ctgatggcgctggacaac	CRISPR spacer
ctgctggcgctggacaac	Protospacer
*** **************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP031607_8 8.1|4343834|25|NZ_CP031607|CRISPRCasFinder 4343834-4343858 25 MH067971 Arthrobacter sp. strain ANT_H40 plasmid pA40H2, complete sequence 48130-48154 3 0.88
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_CP019319 Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-7, complete sequence 15086-15113 4 0.857
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_CP007796 Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence 424771-424798 5 0.821
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_CP032325 Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence 286419-286446 5 0.821
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_CP022369 Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence 377523-377550 5 0.821
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_CP032349 Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence 406881-406908 5 0.821
NZ_CP031607_6 6.2|4075054|28|NZ_CP031607|CRISPRCasFinder 4075054-4075081 28 NZ_HG938356 Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence 118051-118078 5 0.821
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NC_017805 Deinococcus gobiensis I-0 plasmid P1, complete sequence 312090-312117 6 0.786
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_LN832562 Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence 303055-303082 6 0.786
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_CP011590 Enterobacter asburiae strain CAV1043 plasmid pCAV1043-97, complete sequence 193-220 6 0.786
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_CP022542 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence 106669-106696 6 0.786
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_CP021083 Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence 345677-345704 6 0.786
NZ_CP031607_6 6.2|4075054|28|NZ_CP031607|CRISPRCasFinder 4075054-4075081 28 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 646239-646266 6 0.786
NZ_CP031607_6 6.2|4075054|28|NZ_CP031607|CRISPRCasFinder 4075054-4075081 28 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 883181-883208 6 0.786
NZ_CP031607_6 6.2|4075054|28|NZ_CP031607|CRISPRCasFinder 4075054-4075081 28 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 164043-164070 6 0.786
NZ_CP031607_7 7.1|4075276|28|NZ_CP031607|CRISPRCasFinder 4075276-4075303 28 MH536819 Gordonia phage Fury, complete genome 3432-3459 6 0.786
NZ_CP031607_7 7.1|4075276|28|NZ_CP031607|CRISPRCasFinder 4075276-4075303 28 MH576960 Gordonia phage Pleakley, complete genome 3432-3459 6 0.786
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_CP005190 Sphingobium sp. MI1205 plasmid pMI1, complete sequence 91376-91403 7 0.75
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_CP015867 Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence 96093-96120 7 0.75
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_LN831788 Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence 46206-46233 7 0.75
NZ_CP031607_6 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder 4075003-4075030 28 NZ_CP040820 Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence 156691-156718 7 0.75
NZ_CP031607_6 6.2|4075054|28|NZ_CP031607|CRISPRCasFinder 4075054-4075081 28 NC_017958 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence 767198-767225 7 0.75
NZ_CP031607_7 7.1|4075276|28|NZ_CP031607|CRISPRCasFinder 4075276-4075303 28 NC_017805 Deinococcus gobiensis I-0 plasmid P1, complete sequence 410324-410351 7 0.75
NZ_CP031607_7 7.1|4075276|28|NZ_CP031607|CRISPRCasFinder 4075276-4075303 28 MH622939 Siphoviridae sp. isolate ctbf_3, complete genome 24863-24890 8 0.714

1. spacer 8.1|4343834|25|NZ_CP031607|CRISPRCasFinder matches to MH067971 (Arthrobacter sp. strain ANT_H40 plasmid pA40H2, complete sequence) position: , mismatch: 3, identity: 0.88

accggagggtcgcgtcagaagcctg	CRISPR spacer
cccggagggacgcgtcagaaacctg	Protospacer
 ******** **********.****

2. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP019319 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-7, complete sequence) position: , mismatch: 4, identity: 0.857

tctgca-ccagcccgtccgggccgttcca	CRISPR spacer
-cggcgcccagcccgtccgggccgctcca	Protospacer
 * **. *****************.****

3. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
gctgcaccagcccgaccgagccgttcgg	Protospacer
 ************* ***.******* .

4. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
actgcaccagcccgaccgagccgttcgg	Protospacer
 ************* ***.******* .

5. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
gctgcaccagcccgaccgagccgttcgg	Protospacer
 ************* ***.******* .

6. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
gctgcaccagcccgaccgagccgttcgg	Protospacer
 ************* ***.******* .

7. spacer 6.2|4075054|28|NZ_CP031607|CRISPRCasFinder matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 5, identity: 0.821

tggtgatcaggccgcgcgggccattcca	CRISPR spacer
tggtgatcgggccgcgcgggcttaccca	Protospacer
********.************.  .***

8. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 6, identity: 0.786

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
cctgcaccagcccgttcgggtcgttgat	Protospacer
.**************.****.****   

9. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 6, identity: 0.786

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
tcggcaccggcccgtccgggccggacag	Protospacer
** *****.**************  * .

10. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP011590 (Enterobacter asburiae strain CAV1043 plasmid pCAV1043-97, complete sequence) position: , mismatch: 6, identity: 0.786

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
gctgcaccagcgcgtccgggacgtgcat	Protospacer
 ********** ******** *** *  

11. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP022542 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence) position: , mismatch: 6, identity: 0.786

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
tgcgcaccagcccgtccgggtcgatcac	Protospacer
* .*****************.** **  

12. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 6, identity: 0.786

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
cctccaccagcccgtccggggcgtgcgc	Protospacer
.** **************** *** *  

13. spacer 6.2|4075054|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.786

tggtgatcaggccgcgcgggccattcca	CRISPR spacer
tggtgatccggccgcgcgggcggctcgg	Protospacer
******** ************ ..** .

14. spacer 6.2|4075054|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 6, identity: 0.786

tggtgatcaggccgcgcgggccattcca	CRISPR spacer
cgctgatcaggccgcgctggccagtctg	Protospacer
.* ************** ***** **..

15. spacer 6.2|4075054|28|NZ_CP031607|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.786

tggtgatcaggccgcgcgggccattcca	CRISPR spacer
cgctgatcaggccgcgctggccagtctg	Protospacer
.* ************** ***** **..

16. spacer 7.1|4075276|28|NZ_CP031607|CRISPRCasFinder matches to MH536819 (Gordonia phage Fury, complete genome) position: , mismatch: 6, identity: 0.786

cgctgatcaggccaccgtcgaagttggc	CRISPR spacer
cgctgatcaggccaccgtcggcatcgaa	Protospacer
********************. .*.*. 

17. spacer 7.1|4075276|28|NZ_CP031607|CRISPRCasFinder matches to MH576960 (Gordonia phage Pleakley, complete genome) position: , mismatch: 6, identity: 0.786

cgctgatcaggccaccgtcgaagttggc	CRISPR spacer
cgctgatcaggccaccgtcggcatcgaa	Protospacer
********************. .*.*. 

18. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP005190 (Sphingobium sp. MI1205 plasmid pMI1, complete sequence) position: , mismatch: 7, identity: 0.75

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
ggcgcaccagcccgtccggcccgttgtc	Protospacer
  .**************** ***** . 

19. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 7, identity: 0.75

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
agagcaccagcgcgtcggggccgttcac	Protospacer
   ******** **** *********  

20. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_LN831788 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence) position: , mismatch: 7, identity: 0.75

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
tcggcaccagccagtccgggccgaggac	Protospacer
** ********* **********     

21. spacer 6.1|4075003|28|NZ_CP031607|CRISPRCasFinder matches to NZ_CP040820 (Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence) position: , mismatch: 7, identity: 0.75

tctgcaccagcccgtccgggccgttcca	CRISPR spacer
cgtgcacccgcccgtccgggccgaacag	Protospacer
. ****** **************  * .

22. spacer 6.2|4075054|28|NZ_CP031607|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.75

tggtgatcaggccgcgcgggccattcca	CRISPR spacer
cggtgatcagaccgcgcgggccggtgat	Protospacer
.*********.***********. *   

23. spacer 7.1|4075276|28|NZ_CP031607|CRISPRCasFinder matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 7, identity: 0.75

cgctgatcaggccaccgtcgaagttggc	CRISPR spacer
acatgatcaggccgccgtcgatgttgat	Protospacer
   **********.******* ****..

24. spacer 7.1|4075276|28|NZ_CP031607|CRISPRCasFinder matches to MH622939 (Siphoviridae sp. isolate ctbf_3, complete genome) position: , mismatch: 8, identity: 0.714

cgctgatcaggccaccgtcgaagttggc	CRISPR spacer
tctgacccaggccaccctcgaagttggc	Protospacer
. . . .********* ***********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2089402 : 2099304 7 Moraxella_phage(16.67%) tRNA NA
DBSCAN-SWA_2 3153293 : 3216735 49 Staphylococcus_prophage(16.67%) transposase,tRNA,protease NA
DBSCAN-SWA_3 3673048 : 3693457 20 Leptospira_phage(25.0%) transposase,protease NA
DBSCAN-SWA_4 3748256 : 3831473 97 Stenotrophomonas_phage(47.62%) integrase,plate,transposase,portal,tail,terminase,capsid,head,holin,protease attL 3792079:3792131|attR 3833073:3833125
DBSCAN-SWA_5 4240065 : 4246438 6 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_6 5024987 : 5034165 6 Escherichia_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage