CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP031599	Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence	0 crisprs	WYL	1
NZ_CP031598	Roseovarius indicus strain DSM 26383 chromosome, complete genome	3 crisprs	csa3,cas3,WYL,DEDDh	6
NZ_CP031602	Roseovarius indicus strain DSM 26383 plasmid pRIdsm_04, complete sequence	0 crisprs	NA	0
NZ_CP031601	Roseovarius indicus strain DSM 26383 plasmid pRIdsm_03, complete sequence	0 crisprs	NA	10
NZ_CP031600	Roseovarius indicus strain DSM 26383 plasmid pRIdsm_02, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

51037 : 101740

Acidithiobacillus_phage(60.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151175227.1\|51037_52567_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	5.5e-117	45.5
WP_151175226.1\|52579_53350_+	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	2.6e-67	51.2
WP_057822035.1\|54186_54465_-	type IV secretion system protein VirB3	NA	NA	NA	NA
WP_012187323.1\|54457_54751_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_057822033.1\|54747_55362_-	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	1.3e-19	52.9
WP_057822031.1\|55405_55759_-	hypothetical protein	NA	NA	NA	NA
WP_057822029.1\|55970_56222_+	hypothetical protein	NA	NA	NA	NA
WP_057822028.1\|56254_56467_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_074940857.1\|57177_57927_+	hypothetical protein	NA	NA	NA	NA
WP_143100596.1\|58454_58763_-	hypothetical protein	NA	NA	NA	NA
WP_083414366.1\|58803_59172_-	L,D-transpeptidase	NA	NA	NA	NA
WP_151175244.1\|59081_60437_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_074940849.1\|60662_61124_-	hypothetical protein	NA	NA	NA	NA
WP_057822022.1\|61190_63377_-	cation-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.3e-121	42.9
WP_074940851.1\|63702_63972_+	hypothetical protein	NA	NA	NA	NA
WP_074940853.1\|64019_64682_-	L,D-transpeptidase	NA	NA	NA	NA
WP_074940855.1\|65109_65691_-	L,D-transpeptidase	NA	NA	NA	NA
WP_057822020.1\|66220_66919_+	hypothetical protein	NA	NA	NA	NA
WP_151175244.1\|67714_69070_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_038147409.1\|69165_69957_-	hypothetical protein	NA	NA	NA	NA
WP_038147410.1\|69953_70835_-	AAA family ATPase	NA	NA	NA	NA
WP_151175245.1\|71899_73255_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_074940799.1\|73251_73557_+	hypothetical protein	NA	NA	NA	NA
WP_057822068.1\|73723_74641_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_057822070.1\|74630_75461_-	hypothetical protein	NA	NA	NA	NA
WP_082647585.1\|75707_76310_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	1.1e-25	38.8
WP_074940803.1\|79227_80535_+	ATP-binding protein	NA	NA	NA	NA
WP_074940805.1\|80540_82718_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_057821806.1\|82720_85375_+	hypothetical protein	NA	NA	NA	NA
WP_057821804.1\|85371_88758_+	AAA family ATPase	A7KV33	Bacillus_phage	2.8e-12	21.7
WP_057821802.1\|88846_89593_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_143100581.1\|89573_89903_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_074940807.1\|90090_90309_+	hypothetical protein	NA	NA	NA	NA
WP_082647573.1\|90387_90657_+	hypothetical protein	NA	NA	NA	NA
WP_057821797.1\|90616_91822_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_057821795.1\|91818_92238_+	hypothetical protein	NA	NA	NA	NA
WP_057821793.1\|92373_94005_+	hypothetical protein	NA	NA	NA	NA
WP_057821791.1\|94530_94764_+	WGR domain-containing protein	NA	NA	NA	NA
WP_143100580.1\|95415_95781_+	hypothetical protein	NA	NA	NA	NA
WP_151175227.1\|95937_97467_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	5.5e-117	45.5
WP_151175226.1\|97479_98250_+	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	2.6e-67	51.2
WP_143100604.1\|99008_99242_-	hypothetical protein	NA	NA	NA	NA
WP_057822083.1\|99379_100162_-	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	3.0e-58	46.9
WP_057822085.1\|100186_101740_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.5e-117	45.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP031598

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031598_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031598_1

2813306-2813403

Orphan

Consensus_repeat	Method
TCGGACCGAAATCTTTTCAAGATTTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031598_1

>merge|NZ_CP031598|1|2813306-2813403|CRISPRCasFinder
TCGGACCGAAATCTTTTCAAGATTTCGGCACCCTTTGCGCACAGACCCCAACCCGATTTCTTGAAAAGAAATCGGATCGAAATCTTTTCAAGATTTCG

>NZ_CP031598|1|1|2813306-2813403|CRISPRCasFinder
TCGGACCGAAATCTTTTCAAGATTTCG	GCACCCTTTGCGCACAGACCCCAACCCGATTTCTTGAAAAGAAA
TCGGATCGAAATCTTTTCAAGATTTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031598.1\|WP_057815482.1\|2807099_2808140_+\|phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270372
NZ_CP031598.1\|WP_057815489.1\|2803750_2804629_+\|YicC-family-protein	unknown	unknown	gnl\|CDD\|236993
NZ_CP031598.1\|WP_057815487.1\|2804691_2805333_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP031598.1\|WP_057815460.1\|2820978_2821869_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP031598.1\|WP_057815475.1\|2812590_2813280_+\|phosphate-regulon-transcriptional-regulatory-protein-PhoB	unknown	unknown	gnl\|CDD\|131209
NZ_CP031598.1\|WP_057815466.1\|2818870_2819626_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377050
NZ_CP031598.1\|WP_057815477.1\|2811850_2812567_+\|phosphate-signaling-complex-protein-PhoU	unknown	unknown	gnl\|CDD\|273990
NZ_CP031598.1\|WP_057815471.1\|2814696_2815920_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840
NZ_CP031598.1\|WP_057815484.1\|2805869_2806928_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
NZ_CP031598.1\|WP_057815479.1\|2809699_2811028_+\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|223654
NZ_CP031598.1\|WP_057815468.1\|2818430_2818874_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
NZ_CP031598.1\|WP_143100331.1\|2813435_2813678_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_057815473.1\|2813681_2814593_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP031598.1\|WP_057815458.1\|2822157_2822496_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380366
NZ_CP031598.1\|WP_057815469.1\|2817554_2818073_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_057815478.1\|2811043_2811841_+\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237645
NZ_CP031598.1\|WP_057815480.1\|2808230_2809703_+\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|223646
NZ_CP031598.1\|WP_057815470.1\|2816066_2817467_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240554
NZ_CP031598.1\|WP_057815485.1\|2805329_2805851_+\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|223735
NZ_CP031598.1\|WP_057815463.1\|2820024_2820903_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491

Protein	Function_ID	Function_description	E-value
NZ_CP031598.1\|WP_057815482.1\|2807099_2808140_+\|phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270372	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.34717e-65
NZ_CP031598.1\|WP_057815489.1\|2803750_2804629_+\|YicC-family-protein	gnl\|CDD\|236993	PRK11820, PRK11820, YicC family protein.	2.1207e-105
NZ_CP031598.1\|WP_057815487.1\|2804691_2805333_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	2.17118e-113
NZ_CP031598.1\|WP_057815460.1\|2820978_2821869_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	2.12486e-157
NZ_CP031598.1\|WP_057815475.1\|2812590_2813280_+\|phosphate-regulon-transcriptional-regulatory-protein-PhoB	gnl\|CDD\|131209	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	2.93661e-127
NZ_CP031598.1\|WP_057815466.1\|2818870_2819626_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|377050	pfam03472, Autoind_bind, Autoinducer binding domain. This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules.	9.30822e-24
NZ_CP031598.1\|WP_057815477.1\|2811850_2812567_+\|phosphate-signaling-complex-protein-PhoU	gnl\|CDD\|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	6.71169e-70
NZ_CP031598.1\|WP_057815471.1\|2814696_2815920_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	0
NZ_CP031598.1\|WP_057815484.1\|2805869_2806928_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	3.18525e-102
NZ_CP031598.1\|WP_057815479.1\|2809699_2811028_+\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	9.77629e-86
NZ_CP031598.1\|WP_057815468.1\|2818430_2818874_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	2.6566e-89
NZ_CP031598.1\|WP_057815473.1\|2813681_2814593_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.44206e-84
NZ_CP031598.1\|WP_057815458.1\|2822157_2822496_+\|cupin-domain-containing-protein	gnl\|CDD\|380366	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain. This family includes bacterial and archaeal pectin degradation protein KdgF that catalyzes the linearization of unsaturated uronates from both pectin and alginate, which are polysaccharides found in the cell walls of plants and brown algae, respectively, and represent an important source of carbon. These polysaccharides, mostly consisting of chains of uronates, can be metabolized by bacteria through a pathway of enzymatic steps to the key metabolite 2-keto-3-deoxygluconate (KDG). Pectin degradation is used by many plant-pathogenic bacteria during infection, and also, pectin and alginate can both represent abundant sources of carbohydrate for the production of biofuels. These proteins belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	2.00588e-15
NZ_CP031598.1\|WP_057815478.1\|2811043_2811841_+\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237645	PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional.	0
NZ_CP031598.1\|WP_057815480.1\|2808230_2809703_+\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	1.15107e-94
NZ_CP031598.1\|WP_057815470.1\|2816066_2817467_+\|MATE-family-efflux-transporter	gnl\|CDD\|240554	cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	7.28516e-90
NZ_CP031598.1\|WP_057815485.1\|2805329_2805851_+\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|223735	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only].	6.85002e-89
NZ_CP031598.1\|WP_057815463.1\|2820024_2820903_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	1.87217e-153

>NZ_CP031598.1|WP_057815475.1|2812590_2813280_+|phosphate-regulon-transcriptional-regulatory-protein-PhoB
MASEQPSVLLVEDEPAQREVLAYNLEADGFAVTRAENGEEALMLVDEAAPDIILLDWMLPNVSGIEVCRQLKTRASTRGVPIIMISARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLRRTRPSTVGERLEYEDILLDSETHRVTRDGNLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWGRDIYVDTRTVDVHIGRLRKALCQHGGQDPLRTVRGAGYALG
>NZ_CP031598.1|WP_057815477.1|2811850_2812567_+|phosphate-signaling-complex-protein-PhoU
MIDTHIASAFDRDLETIQALIMKMGGLVEDAILKAATSLETRDEELAEEVRDNDRAIDELEEQINEEAARIIAIRQPAAVDLRVILCVMKIAANLERIGDYAKNMAKRTTVLSQMAQIHGATASIRRMAKEVERMLKDVLDAFVQRDAATANAVIHRDEDVDQMYNALFREFLTFMMEDPRNITACMHLHFIAKNTERMGDHATNIAEQVIYLVTGEVPDDKRPKDDRTSTDPNVAPA
>NZ_CP031598.1|WP_057815478.1|2811043_2811841_+|phosphate-ABC-transporter-ATP-binding-protein
MYDTPNTERTVTKNETKFSARKVQVYYGDTHAIKDVDVDIEDKTVTAFIGPSGCGKSTFLRCLNRMNDTIDVCRVEGDILLDGQDIYDKKVDPVQLRAKVGMVFQKPNPFPKSIYDNIAYGPRIHGLAKNKADLDEIVEKSLRRGAIWNEVKDRLHAPGTGLSGGQQQRLCIARAVATEPEVLLMDEPCSALDPIATSQVEELIDELRTNYSVIIVTHSMQQAARVSQKTAFFHLGNLVEFGETGQIFTNPQDERTESYITGRIG
>NZ_CP031598.1|WP_057815479.1|2809699_2811028_+|phosphate-ABC-transporter-permease-PstA
MTDATLNGDGAGKSNSLTARDARTKRRNAAEKRFQAYGMIAIGIGLFFLVVLAIAIVRSGAPAFTKTVVDVEFTLSQEEIDSAESELFKTKAYQDLFISKLEAQLNERGLEVDFDADAIERLLGKTGGTIREYYQGNSNMIGEPVRFELAASSRVDGYFNGRVTREGMQDSRFLMKTDLDIVDALHEAGIMKSAFNWTFITGTDSGVDNPGGAGIGASVVGSFFMMLVVLALSLPIGVAASIYLEEFAPQNKFTDLIEVNISNLAAVPSIVFGILGLAVFIQFMHLPQSAPLVGGLVLTLMTLPTIIISTRASLKAVPPSIRDAALGVGASKMQAVFHHVLPLAMPGILTGTIIGLAQALGETAPLLLIGMVGFVARGYPEGIVSGFTDPNSAMPAQIYTWAARADVAFYEKAWGGIIILLIFLLTMNILAIILRRRFERRW
>NZ_CP031598.1|WP_057815480.1|2808230_2809703_+|phosphate-ABC-transporter-permease-subunit-PstC
MPLLWLILIVLAIAVAGYVLGRQRAVASAGGDSRQLHSLPSYYGSNVALKAIVPAFLLLIAWLLIQPLYVNNAVSGMIPENSVREGSSLGLVMAEVRRAADGLDVIVGQGMITEDYARSDEADPAQIGEQLREAGQVVTSELTQPILRAAQSYRVMNATGNTIMTVAVLILSVLGFLYGLKESQADFRARNVVEHGVRAILVGAASIAILTTVGIVLSLVFNTIEFFRLYPAADFFFGLNWAPSFSGRGGSSELGVLPLLWGTFYISIVALAVAVPIGLFAAIYLSEYASPRVRAFAKPMLEVLAGIPTIVYGLFALLTVGPLLLKFFGDDGLGWMQAGTAVMTAGLVMGIMLIPFVSSLSDDIINSVPQAMRDGSYGLGATKSETIRQVVLPAALPGIVGAILLAASRAIGETMIVVLGAGAAARLSLNPFEAMTTVTAKIVSQLTGDADFASPEALVAFALGMTLFVITLCLNIFALYIVRKYREQYE
>NZ_CP031598.1|WP_057815482.1|2807099_2808140_+|phosphonate-ABC-transporter-substrate-binding-protein
MSFVKLTASSLAIAAVSATAAAARDNVQVAGSSTVLPYASIVAELFGENTDFPTPVVESGGSSAGLKRFCEGVGENTIDVANASRAIREKEIKACAENGVTDIIEVRIGYDGIVFASQQSGPEFTAFEPSDIFNAIGAKVMVDGKVVDNPHTNWADFNSDLPDAEIAMFIPGTKHGTREVFEDKVLLKGCEDTGAMKAMMDGGMNEDDAEDACLDVRTDGKSVDIDGDYTETLARIDANTNGIGVFGLAFYENNTDKLKVATMGGISPSTETIASGEYPVSRPLFFYVKKAHIGVIPGLKEYAQFFVADEIAGPGGPLSNYGLVADPELADTQAVVEEEKTMGGSM
>NZ_CP031598.1|WP_057815484.1|2805869_2806928_+|PAS-domain-containing-sensor-histidine-kinase
MNADNISSLLGAIPLPSVLIGRGERILGANDRALQLLGPTITGRHFITALRQPAILDAIEACLRDSQPRTTRYLSSDGTQDTTFVVTCSAVDTEAGRGVLVCFEDVTHMEQAGQMRRDFVANVSHELRSPLTALLGFIETLRGPAKGDAAASERFLGTMQDEAQRMERLVRDLLSLSRVEEQERVRPTDPVDLCRLIGSVRHALTPVAEENGVTLTTDLPETPIIVPGDTDQLQQVITNLTENAIKYGGQGKTVHVSLTTTEQEPLVRGPAAVISVRDDGPGIDPVHIPRLTERFYRVDSHRSRAMGGTGLGLAIVKHIVGRHRGRLRIESRPGEGSDFRVVLPRDHAQQPR
>NZ_CP031598.1|WP_057815485.1|2805329_2805851_+|gamma-carbonic-anhydrase-family-protein
MTIYSLDGHTPQLADDTWVAPDANLIGQVILEEGASVWFGATLRGDNEPITIGRGSNVQENCVMHTDMGYPLTVGENCTIGHKVMLHGCTLGNNTLIGMGATILNGAKIGNNCLIGAGALVTEGKEIPDGSLVMGAPGKVVRQLDDKALEAVTYGAVHYQENMRRYRDGLKEV
>NZ_CP031598.1|WP_057815487.1|2804691_2805333_+|guanylate-kinase
MAERRGLLIILSSPSGAGKSTLSRRLRDWDDTISFSVSATTRTPREGEVDGQDYHFMTETNFKRAVNAGQMLEHAHVFGNFYGSPRGPVEEAIGQGRDVLFDIDWQGAQQIQNSALGQHTLSIFILPPSIAELRARLVKRGQDAPDVVAKRMQKSWDEISHWGEYSYVLINDDLDATDEKLKSIVTAARLKRIQQPGLNAHVQKLQQEFEDNT
>NZ_CP031598.1|WP_057815489.1|2803750_2804629_+|YicC-family-protein
MTAFAAAKGAQDGFSWTWEMRSVNGKGLDLRLRVPDWVDGLEAGLRARAGKALGRGNVSLNLRLVRDDGAGALAVNAAQLEDVLTAMAEVENRAMARGVTLAPATAADLLGLRGVLDTGAGEDDTTALCKTLLADFETVLAAFLDMRATEGRALAAVLTAQLDDIERLTDAAAQAAEARKPEMEQAFKAALARVMETADTADEARIAQEMALIAVKADVTEELDRLRAHVAAARDLLAAGSPVGRKLDFLSQEFNREANTLCSKAQNKALTATGLELKTVIDQMREQVQNVE
>NZ_CP031598.1|WP_143100331.1|2813435_2813678_+|hypothetical-protein
MKKSDTLKATMPHRATVTFHTHAKTKASLKERPLGNETLVHCPAEEEAVIASVKRGQEDARAGRVHNTDAARRRVPPSAP
>NZ_CP031598.1|WP_057815473.1|2813681_2814593_-|LysR-family-transcriptional-regulator
MPPAPRRFLPSTAALRALEALDRLGSVTAAAEDLNLTQGAVSRQLQALEEQLGVPLVIRQGRRVVLTPEAAHYASDIRGALQKITQASLRLTVNPTGGSLDLAILPTFGMRWLVPRLSDFARRHPEVTINLTTRLRPFNFASEPFDAAIHFGKADWPGAASMKLRPEAVVAVCAPEVLAGSHPQRAEDLLRLPLLHIETRPEAWAAWFAEHGVEAAQVTGQIYDQFSTITQAALHGLGVALLPDYLAEQDLATGRLCKAWGGPTPSPGAYHLVWPVEKSGDRALLKFRDWLATQTEDDERLPR
>NZ_CP031598.1|WP_057815471.1|2814696_2815920_+|acyl-CoA-dehydrogenase
MSLDAPKIRAKDKPNLSSFDWEDPFYLTKQLEEDERMIAESGRTFAQEVLQPRVMEAFENETVDPGIFREMGEMGLLGTTIPEEYGGLGAGYVSYGLVAREIERVDSGYRSMMSVQSSLVMYPIYAYGTEEQRQKYLPGLASGELIGCFGLTEPDAGSDPAGMKTRAVKTEGGYRLTGTKMWISNSPIADVFVVWAKSEAHDGKIRGFVLEKGMKGLSAPKIEKKLSLRASVTGEIVMEGVEVGEDALLPNVEGLKGPFGCLNRARYGIAWGVMGSAEFCWHAARQYGLDRQQFGRPLANTQLFQKKLADMQTEITLGLQAALRVGRLMDEASAAPEMISLIKRNNCGKALDIARQARDMHGGNGISGEFHVIRHAVNLETVNTYEGTHDVHALILGRAQTGLQAFF
>NZ_CP031598.1|WP_057815470.1|2816066_2817467_+|MATE-family-efflux-transporter
MAHTADAIFTQGSLMRHVSAMSFTTSIGLMAIFAVDLIDILFISMLGYEPLAAAAGYASALMFFASAINIGLSIAAGALVSRSIGADRVEEGREYATSVAVFSVITGILLPLFMLPNLSFLLGLVGATGEAARLAESYLWIILPTTMFSGLSMTAVAVIRAHGDGRTAMYPSLAGAGVNAVMDPILIFSLGLGLEGAAWATVLARFATMVWAMYPAILRFDGFAKPRLETVIRDWSEATRIAIPAVLATIATPVGSAIVTREMAKYGTEAVVGMAIISRMIPVVFAVVMALSGAIGPIIGQNFGAGRLDRVRETFLDGLVFVAVYVVAVAALLFLLRDPIADLFGATGQARALLYLFCGPLALASFFNGAIFVANATFNNLGHPGYSTWVNWGRHTLGTWPLAVLGGMHFGAEGVLIGQALGGVIFAAIATWVSLRTIRNPTDTPVFAHFLYQPLRMQVMCHRCCR
>NZ_CP031598.1|WP_057815469.1|2817554_2818073_-|hypothetical-protein
MKEVSWGIWLVRLVVSTLLTGLIAWGISFKVADYVVKANTNSIETTLRAMMEADKQSADATQSTLSQINESLQTTNSELSQIRGAIGNLETESSTQITEIAYIRRDLSRVEQAVQDAGIDIKAMAYAGDLTPSEFSFAKWEEVRAKFGITEDEPLFVIVPPMVENFQNLFGD
>NZ_CP031598.1|WP_057815468.1|2818430_2818874_+|type-II-3-dehydroquinate-dehydratase
MTSLLILNGPNLNLLGQRQPHVYGATTLAEIEAICRAKAQAMGLGLDFAQSNSEGALVDAIHAAKGTHDGIILNAGAYTHTSIALMDAISSVELPAIELHLSNVHAREEFRHVSYIARVAVGVICGFGPAGYELAIDAMARHLEARK
>NZ_CP031598.1|WP_057815466.1|2818870_2819626_+|LuxR-family-transcriptional-regulator
MIPADELNALITAHSIETLWDRHTRHMAEYGFDRLIYGFTRYMTPNSLGDPDDFILLSNHDPAYMDRFIGEGLYFHAPMVRWALENDGARSWSLLQDMIEIGALTADERKVIEFNRSMGVVAGYSISFKPVSSRAKGAIALTARQGMTQAEVEEIWAQHGEDILLLNNLTHLRIMTLPYTGPARTLTSRQREVLEWVGDGKTVQDTAVIMGLTPPTVEKHLRLARQALNVETTAQAVLKAAFQNQIFVLER
>NZ_CP031598.1|WP_057815463.1|2820024_2820903_-|elongation-factor-Ts
MAITAAMVKELRDSTGAGMMDAKKALTETDGDMDAAVDWLRTKGLAKAAKKSGRTAAEGLVAVKVDGGTGVAVEVNSETDFVAKNADFQKMVSDIAGVALTVSDVEALKEADMGGKKVNDVITDKVATIGENMSVRRMAKVDGQTVVSYIHNAATDGMGKIGVLVALNGGDEAFGRQVAMHIAATNPAALDEASLDPAIVEKERQIQIDIARESGKPEQVIEKMIEGRMRKFMAEVTLLGQAFVINPDLTVAQAAKEAGAEIVGYVRLEVGEGIEKKDEDFAAEVAKTAAGG
>NZ_CP031598.1|WP_057815460.1|2820978_2821869_-|30S-ribosomal-protein-S2
MALPEFSMRQLLEAGVHFGHQTQRWNPRMGEFIYGARNGIHIIDLTQSVPMLDAALNVIRETVAKNGRVLFVGTKRQASAPVAEAAEKCAQYYMNHRWLGGTLTNWQTVSKSIQRLAHIDEVLGSGAEGMTKKERLGMEREQEKLQASLGGIREMGGLPDLLFVIDVKKEALAIAEAKKLGIPVVAVVDTNCSPDGIDYIIPGNDDAARAISLYCDLVSRAALDGMSAQMGAAGVDIGAMEEAPVEEEVSRPESTGVETGDVSEETAHDDSVAKGAPLDIESAEEVKKEAEEKAES
>NZ_CP031598.1|WP_057815458.1|2822157_2822496_+|cupin-domain-containing-protein
MPFPKFFADLPELDAPFDPAAVTARAIAGPEALAVFFEIHQDTSIAPHSHGDQWGMVIDGELHLKLEGEPRIFHPGESYDIPAGTVHSAFIPAGTRLLDVFAEPDRYKVKRG

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Crispr_ID: NZ_CP031598_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031598_2

2869357-2869480

Orphan

Consensus_repeat	Method
CTTCCCCATTTTGGGCATGGTGTTTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP031598_2

>merge|NZ_CP031598|2|2869357-2869480|CRISPRCasFinder
TTTGCCCATTTTGGGCATGGTCACTTTGCGAAAACGGGCGAAACCAACCCCATTTTGGGCATAGGGCTTCCCCATTTTGGGCATGGTGTTTTCAGAACCTTCCCCTTTTTGGGGTTGCTCCTTC

>NZ_CP031598|2|2|2869357-2869480|CRISPRCasFinder
TTTGCCCATTTTGGGCATGGTCACTT	TGCGAAAACGGGCGAAAC
CAACCCCATTTTGGGCATAGGGCTTC	CCCATTTTGGGCATGGTGTTTTCAGAAC
CTTCCCCTTTTTGGGGTTGCTCCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031598.1\|WP_057815360.1\|2876295_2877138_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP031598.1\|WP_057815380.1\|2869120_2869321_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_057815371.1\|2871378_2872632_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271182
NZ_CP031598.1\|WP_057815390.1\|2863161_2863386_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_057815366.1\|2873913_2874699_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187600
NZ_CP031598.1\|WP_057815364.1\|2874721_2875513_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP031598.1\|WP_057815362.1\|2875509_2876286_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP031598.1\|WP_143100327.1\|2864507_2865017_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_057815357.1\|2877141_2878230_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP031598.1\|WP_057815374.1\|2870683_2871358_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_057815368.1\|2872977_2873883_-\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200563
NZ_CP031598.1\|WP_074939825.1\|2870402_2870534_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
NZ_CP031598.1\|WP_074939736.1\|2863444_2863696_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224314
NZ_CP031598.1\|WP_057815384.1\|2867507_2868617_-\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_CP031598.1\|WP_057815389.1\|2863692_2864292_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_057815382.1\|2868860_2869124_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_143100326.1\|2868609_2868861_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_057815386.1\|2866844_2867294_-\|phage-terminase-small-subunit-P27-family	unknown	unknown	gnl\|CDD\|377461
NZ_CP031598.1\|WP_057815378.1\|2869949_2870195_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_057815392.1\|2862925_2863165_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP031598.1\|WP_057815360.1\|2876295_2877138_-\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	1.37978e-62
NZ_CP031598.1\|WP_057815366.1\|2873913_2874699_-\|glucose-1-dehydrogenase	gnl\|CDD\|187600	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	4.99361e-77
NZ_CP031598.1\|WP_057815362.1\|2875509_2876286_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	4.3804e-59
NZ_CP031598.1\|WP_057815368.1\|2872977_2873883_-\|polysaccharide-deacetylase	gnl\|CDD\|200563	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins. This family is represented by a peptidoglycan deacetylase (HP0310, HpPgdA) from the gram-negative pathogen Helicobacter pylori. HpPgdA has the ability to bind a metal ion at the active site and is responsible for a peptidoglycan modification that counteracts the host immune response. It functions as a homotetramer. The monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of polysaccharide deacetylase (DCA)-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. In contrast to typical NodB-like DCAs, HpPgdA does not exhibit a solvent-accessible polysaccharide binding groove, suggesting that the enzyme binds a small molecule at the active site.	1.90776e-101
NZ_CP031598.1\|WP_074939825.1\|2870402_2870534_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	0.000343327
NZ_CP031598.1\|WP_074939736.1\|2863444_2863696_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224314	COG1396, HipB, Predicted transcriptional regulators [Transcription].	0.000210814
NZ_CP031598.1\|WP_057815384.1\|2867507_2868617_-\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	2.50287e-94
NZ_CP031598.1\|WP_057815386.1\|2866844_2867294_-\|phage-terminase-small-subunit-P27-family	gnl\|CDD\|377461	pfam05119, Terminase_4, Phage terminase, small subunit.	2.17614e-18
NZ_CP031598.1\|WP_057815364.1\|2874721_2875513_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.23862e-61
NZ_CP031598.1\|WP_057815357.1\|2877141_2878230_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	4.36581e-150
NZ_CP031598.1\|WP_057815371.1\|2871378_2872632_-\|site-specific-integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.70024e-39

>NZ_CP031598.1|WP_057815380.1|2869120_2869321_-|hypothetical-protein
MNDSFDDNIKASITAVAAQSVDHALAKAKELGHDPIASLDGLIMTARECIAVAEEAKEQIQKERQK
>NZ_CP031598.1|WP_057815382.1|2868860_2869124_-|hypothetical-protein
MSNPNTHPEYSRARSLIDQALNEISEDGDIGEFANCLLGQSCALYRLVHGDSDANGLTAMLARIAAREAERAAQDPSSPHCGPAGRA
>NZ_CP031598.1|WP_143100326.1|2868609_2868861_-|hypothetical-protein
MDWQGTSRTVELTITYICDYLLIVIGFNYRVSKHDAGRAITSGHAGRWSNRHTAMHDAGAMTATTPLHIAAFAAPNCMEKPNG
>NZ_CP031598.1|WP_057815384.1|2867507_2868617_-|phage-major-capsid-protein
MADGNTLVEVKNLFSNTQAEVQQLADRLAELETNANRPGAPFAKARDLRDGAKAQMIDFLRTGQGLEAKQLQGNVGAQGGFAVPEQIDRMVLDQLVDITPVRRVAQVVKTTSPDYAKLIGRRGTGSGWTSETGTRTSQDTPNLAQVKPSMGELYTYGTVTRHLLEDAAFDIEAWLIENIVTEFAVQEGAAFVSGDGVNKPVGFLAGDAPVSTGDDTRDFGTLQFIATGASGDFAASDPDNVFFDTVAALKPGYRAGAVWMMNSTTSAAVRKLKDTDGRSLWVDGLTEAQPSRLLGYPVEIAEDMPDIAADSLSIAFGNFQRGYIIADRAGMTMIRDEVTQPGFIKLYAARRTGGTVADSNAIKLIKFAN
>NZ_CP031598.1|WP_057815386.1|2866844_2867294_-|phage-terminase-small-subunit-P27-family
MKGGKQIPDEMKVITGTFRKDRSNPNAPSVPSGIPEAPAWLSERASELFASLCAVLDNLNIVSPADECMIAMLASRLEEIEVLTATIEDQGRTYKGESGLWKARPEVSQRNEAMRHCHALLSEFGLSPATRNKVTANKPAEKNPFAALD
>NZ_CP031598.1|WP_143100327.1|2864507_2865017_+|hypothetical-protein
MGALNGWLSLFWVVGILLLVWLGAVGTAPMIQRNEARNECRDLRQRLAPNEAQWVSVEMALQYLYDELTSGRFRDQGQILQATKSLGGQSENLWDHVGAWLVDGIKSGKIVARGIREMRSRLERVPRSISDNPWDGDLAHKAVLDDDGIKWSLKEINQPSVREYLVGLS
>NZ_CP031598.1|WP_057815389.1|2863692_2864292_+|hypothetical-protein
MNPILEYDDLRKAGRAVVITSFLVILTSECTAPFKEINFLGINVGFGLGELIVILWFLLVIYTINFLFFLFSENPLYATDKLRIQRDNRVQQRHEDIRHLSAELDASLKTQRDQVRRNRKIDVFERDNKENAIVERQGQLSKKNNQKKKRASQYFGWVFRFEAARFWLFQVAAPVLLLAVALTPLSNFFGEQVCPNFTP
>NZ_CP031598.1|WP_074939736.1|2863444_2863696_+|helix-turn-helix-transcriptional-regulator
MEQAKISQGQLRAARGLLGWSQATLADRAGISSMTVKRAEGSGSPYPAQGALSAIRAALEDGGVQFIEENGGGAGVRLRRREP
>NZ_CP031598.1|WP_057815390.1|2863161_2863386_-|hypothetical-protein
MPKTISDIQTEAVYLAALIDGADLLADRATCGDSNDPEFQQARNSLPAIFADMRRRATELANDLETMDKKGGEA
>NZ_CP031598.1|WP_057815392.1|2862925_2863165_-|hypothetical-protein
MTCLQTEAFNETNHQLHLTTSLIDAAYDMAMECRAIDHSDQEAIEMMAILEVAREKARTAMQLHEAEGKMSRNNSEQDA
>NZ_CP031598.1|WP_057815378.1|2869949_2870195_-|hypothetical-protein
MSKEKPTRQQIWRKRNPKKYACHLAAQNALRLGVIKRQPCEVCGGEKADMHHDDYSRPFDVRFLCRRHHKQHHAKGPKDGA
>NZ_CP031598.1|WP_074939825.1|2870402_2870534_-|AlpA-family-phage-regulatory-protein
MTLWRWMRDPALNFPKPVYIGNRRYWREADVIEWLESQNTEAA
>NZ_CP031598.1|WP_057815374.1|2870683_2871358_-|hypothetical-protein
MHRVESETFSDSDEDFDALAELSKAGNISSKNLLSAVKREIAEVLTDAGFSDPGKSIFHKGRFWCDVQEGERPTGKAVSPGWAFARSQSEPLTPVHEAASIYMGIIFLESALAHGDMEKVFFNAFQLGVGINRFNARRRHLKRITIRKKSERGLREVSEGRAAANAEKAAKAKQWKMIAIRMANEYKERNPQASKSSIAIWISRNWPEDAGVLRPATNTIRQAI
>NZ_CP031598.1|WP_057815371.1|2871378_2872632_-|site-specific-integrase
MAKAMTTKAVEAFKPGPKRREIPDPALSGLYLVIQPSGVKSWALRYRYSGKPRKLTLGKWPIMGVADARAAASEAIEALELGNDPGAAKRKAKAARIEAHLSERDKIKTLLEQYAKRHLSTLKSGATVKRELDRHVRTVWGDRDIHDIARRDVIDLLDGIADSGRVVSANRVRSYLGTFFGWCVDRDIIAMSPAQGVKPVVKEKSRDRVLSDDEIRWFWRACDDLGFPWGPFGKTLLLTGQRLGEVAGISDAEIEGGVWYLSTERTKNGRSHTVPLSEAVRAVLAGVERVESRPRLIYTTTGASPLSGFHKGRNHIAERMAEIASEEAGEPVEIPHWTFHDLRRTAATGMARLGIPVRVTEAVLNHVSGTGGGIVAVYQRHDYADEKRAALDAWARLVADLVEGRSDNVVQIEGAKR
>NZ_CP031598.1|WP_057815368.1|2872977_2873883_-|polysaccharide-deacetylase
MIENPVPWPNGAKCAAAITFDIDTDSFLHLEYGDRVPDMVSSTSWLRYDEIAVPRLLKIFREYDLRQTFFYPAWCMEQHPRLVEMILEGGHEIGHHGYLHESPNRLTREDELHWLQRSTETIVRMTGQKPRGYRAPVYNFSRDTADLLAQEGFLYDSSLMTDDVPNLIRTGSGNLIELPTHWAMDDWPHYVHNIELQYMMSIRTPDEAKAVYLSEFDFAYEHGGLWLAIWHPWVSARGPRAQAISQMIRYIMDKVDVWFATLEEIATHINACIADGSYTPRAVDLPYYTGALPDDQRPKQI
>NZ_CP031598.1|WP_057815366.1|2873913_2874699_-|glucose-1-dehydrogenase
MGRLTGKVILVTGAGAGIGRAIAIQAATEGALVTVADIDASACAAVAAEITGQGHAAQAQPLDVTDPFRWTEVTDGIAATHGRLDGLVNNAGIQLSRPLLDTTLDDLRRVFAVNLEGTFLGTQAAMRVMRAAGQGAIVNMSSTLASHPLALNAAYCASKAAVTQLSKVAALEGATSEARIRVNTIHPGVIATPMVEREIADVTRERGLSSDAEVRAEWHRLCPLGIGQPADIAHGAVYLLSDEAAYVTGTELAIDGGHLLT
>NZ_CP031598.1|WP_057815364.1|2874721_2875513_-|SDR-family-oxidoreductase
MSAAAAYRALYEGRHVLVTGASSGIGRSVALGLAQAGARLSVLAENDLIHEAAAGIAATGTAPEHVLHCDVSDAGQVRAALDPLPPIDALIQVAGYQPRTPVDNPDPLIDAEFERCMAINVTGMWHVTRAALGKMGQGGKIVLTSSIWGKTAVPEYAGYVTSKHAVIGLTRALAADLGPKGINVNAVCPGWVETEGAMWTVREQAAEQGIPVAEIVQQIADSFPMPGMMQPQDMQAIYLFLASDLARDMTGQAINVDRGAGVI
>NZ_CP031598.1|WP_057815362.1|2875509_2876286_-|ABC-transporter-permease
MQGSNNLFWPLFGAVSIFFMLSPLVLVVLFSFGENAQATLPIGGLTLDWYRALFDNDNFWRGLQNSIIVTGAVGLSSTVVGTLAALGLARLRPARAGRLITVLSFPIMMPPLVLALSLVTSYAGLGIPMGLHTVIPSHLVFTQPFVILIVYAQMSNFNYAVVDSARDLGASPLRIFFTIILPIIRPTLIGATLIAMAVSLDDFIITFFTIGSGMTLPTLIWGMLRTSLDPSINALGTLVLVATISASIVALRITRYRG
>NZ_CP031598.1|WP_057815360.1|2876295_2877138_-|ABC-transporter-permease
MSADRKPLLMTTPALLVLLCFFVLPMSYFFVVSFWQLKMYQLVPDATFENYVEVYEQYFHAGLFTLGIALLIATITTFLAFMIAYMIRFHAGRFGPLVLFIALVTLFGGYLVKIYAWKTILGTNGILNQTLVGLGLVSEPISWLLYSPPAVVLTLVHFLLPFAILPIVGSLSSIDDTPVECARDLGASKARTVLDVVLPQCQAGIFAAFALSFLMSAGDYVTPRLVGGPHTFMVGNFIESQFVNRLNTPMGSALSYSVLLVCLATLVAFRVALSRLLRRR
>NZ_CP031598.1|WP_057815357.1|2877141_2878230_-|ABC-transporter-ATP-binding-protein
MSDKTEPTGGESPRPLVRLGGVSKDYGTVTAVPPLDFDIAEGEFLALLGPSGCGKTTVLRMIGGFLAPTTGRIEIDGEDVTRLGPEKRRTNMVFQGYGLFPHMSVRANIAYGLQLMKRPRAEIDEKVARMLSLVRLEGFEDRMPAALSGGQAQRVALARALIMNPAVLLLDESLGALDLKLRKSLQNELREIHRAIGGTFVFVTHDQAEAMALATRIAIMKDGRIVQHGTPREVYEQPANEFVADFIGDANILRGTRRSGEVIVPGLSKLGHVDGPDGDVSIVVRPDAVDLLTGGETREFEVTGTLTSQVYYGTHVTFTARLANGEEMMVTQPTPGGPDLPEEGAAVRLGWHRDRCNAVAPE

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Crispr_ID: NZ_CP031598_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031598_3

2911994-2912106

Orphan

Consensus_repeat	Method
GCTTCTTCTTGGCCCAAATATCCCCGCCGGAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031598_3

>merge|NZ_CP031598|3|2911994-2912106|CRISPRCasFinder
GCTTCTTCTTGGCCCAAATATCCCCGCCGGAGGCGTCCCACGCCCTCCCCCAACCCGGACGTCACCCCATGGCACCCGGGCTTCTTCTTGGCCCCAATATCCCCGCCGGAGGC

>NZ_CP031598|3|3|2911994-2912106|CRISPRCasFinder
GCTTCTTCTTGGCCCAAATATCCCCGCCGGAGGC	GTCCCACGCCCTCCCCCAACCCGGACGTCACCCCATGGCACCCGG
GCTTCTTCTTGGCCCCAATATCCCCGCCGGAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031598.1\|WP_057815291.1\|2918068_2919175_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP031598.1\|WP_057815296.1\|2915947_2916130_-\|DUF3553-domain-containing-protein	unknown	unknown	gnl\|CDD\|371884
NZ_CP031598.1\|WP_057815298.1\|2915059_2915827_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225717
NZ_CP031598.1\|WP_057815310.1\|2908366_2909839_-\|carboxypeptidase-M32	unknown	unknown	gnl\|CDD\|341054
NZ_CP031598.1\|WP_057815319.1\|2902166_2903378_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|178031
NZ_CP031598.1\|WP_057815317.1\|2903381_2904362_+\|D-glycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240626
NZ_CP031598.1\|WP_057815304.1\|2912160_2913024_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_057815313.1\|2905018_2905960_+\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP031598.1\|WP_057815315.1\|2904397_2904625_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031598.1\|WP_057815292.1\|2916755_2918027_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP031598.1\|WP_057815290.1\|2919162_2920200_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048
NZ_CP031598.1\|WP_057815306.1\|2911041_2911788_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NZ_CP031598.1\|WP_057815311.1\|2907159_2908041_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP031598.1\|WP_057815312.1\|2905975_2907160_+\|malate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|237594
NZ_CP031598.1\|WP_057815302.1\|2913437_2914064_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
NZ_CP031598.1\|WP_057815288.1\|2920233_2920773_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP031598.1\|WP_057815299.1\|2914226_2915063_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP031598.1\|WP_057815308.1\|2909843_2910983_-\|heme-A-synthase	unknown	unknown	gnl\|CDD\|367131
NZ_CP031598.1\|WP_082647353.1\|2916144_2916759_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370811
NZ_CP031598.1\|WP_057815321.1\|2901242_2901899_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
NZ_CP031598.1\|WP_057815291.1\|2918068_2919175_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NZ_CP031598.1\|WP_057815296.1\|2915947_2916130_-\|DUF3553-domain-containing-protein	gnl\|CDD\|371884	pfam12073, DUF3553, Protein of unknown function (DUF3553). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 60 amino acids in length. This protein has two conserved sequence motifs: GQVQS and TVNF.	2.47391e-23
NZ_CP031598.1\|WP_082647353.1\|2916144_2916759_+\|hypothetical-protein	gnl\|CDD\|370811	pfam10090, HPTransfase, Histidine phosphotransferase C-terminal domain. HPTransfase is a family of essential histidine phosphotransferases. It controls the activity of the master bacterial cell-cycle regulator CtrA through phosphorylation. It behaves as a homodimer by adopting the domain architecture of the intracellular part of class I histidine kinases. Each subunit consists of two distinct domains: an N-terminal helical hairpin domain and a C-terminal [alpha]/[beta] domain. The two N-terminal domains are adjacent within the dimer, forming a four-helix bundle. The C-terminal domain adopts an atypical Bergerat ATP-binding fold.	3.77293e-25
NZ_CP031598.1\|WP_057815310.1\|2908366_2909839_-\|carboxypeptidase-M32	gnl\|CDD\|341054	cd06460, M32_Taq, Peptidase family M32, which includes thermostable carboxypeptidases TaqCP, PfuCP and FisCP. Peptidase family M32 is a subclass of metallocarboxypeptidases, distributed mainly in bacteria and archaea, whose members contain a HEXXH motif that participates in coordinating a divalent cation such as Zn2+ or Co2+. It includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). The keratin-degrading extremophilic eubacterium Fervidobacterium islandicum M32 carboxypeptidase (FisCP) plays an important role in cellular metabolism, and significantly enhances the degradation of native chicken feathers. It has been shown to mainly cleave the C-termini of peptides with a basic amino acid sequence. Novel M32 peptidases from some eukaryotes: protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, have been identified, thus making these enzymes an attractive potential target for drug development against these organisms.	0
NZ_CP031598.1\|WP_057815317.1\|2903381_2904362_+\|D-glycerate-dehydrogenase	gnl\|CDD\|240626	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH). D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.27427e-148
NZ_CP031598.1\|WP_057815319.1\|2902166_2903378_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|178031	PLN02409, PLN02409, serine--glyoxylate aminotransaminase.	4.45338e-167
NZ_CP031598.1\|WP_057815313.1\|2905018_2905960_+\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	2.30296e-91
NZ_CP031598.1\|WP_057815298.1\|2915059_2915827_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225717	COG3176, COG3176, Putative hemolysin [General function prediction only].	2.07238e-42
NZ_CP031598.1\|WP_057815292.1\|2916755_2918027_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP031598.1\|WP_057815290.1\|2919162_2920200_-\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
NZ_CP031598.1\|WP_057815306.1\|2911041_2911788_-\|RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	1.19372e-77
NZ_CP031598.1\|WP_057815311.1\|2907159_2908041_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	1.20401e-170
NZ_CP031598.1\|WP_057815312.1\|2905975_2907160_+\|malate--CoA-ligase-subunit-beta	gnl\|CDD\|237594	PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional.	0
NZ_CP031598.1\|WP_057815302.1\|2913437_2914064_+\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	1.54004e-40
NZ_CP031598.1\|WP_057815288.1\|2920233_2920773_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.06596e-22
NZ_CP031598.1\|WP_057815321.1\|2901242_2901899_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.94421e-30
NZ_CP031598.1\|WP_057815308.1\|2909843_2910983_-\|heme-A-synthase	gnl\|CDD\|367131	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein. This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast.	5.6594e-102
NZ_CP031598.1\|WP_057815299.1\|2914226_2915063_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	3.60366e-28

>NZ_CP031598.1|WP_057815306.1|2911041_2911788_-|RNA-methyltransferase
MPTETPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNSKAAAMASGAGRLLDEAVLADDLPGALADCTYVFATTARVRGLTKPVYAPERAMQVAAEKISAGEKVAVLFGPERAGLENEDVARANAIINVPVNPEFASLNLAQCVLLTAYEWRRASGEVEMERTDMGGADWASHLEVEKLADHYEERMEEAGFFFPEHKREGMKINLRNMWSRMPLTGADVRMLHGVLRQMVRWKDRGE
>NZ_CP031598.1|WP_057815308.1|2909843_2910983_-|heme-A-synthase
MSGKRSIFEEVGEGEARREAPKGGMIDKGRRGARGAVRVWLMVLFALVVVMIAVGGLTRLTDSGLSITEWNVVKGALPPTDQAAWEAEFEKYQAIPEYQLQNKGMSLEEFKTIYWWEWGHRQLGRVIGLVWALGFFGFLLTRKMPPGWTGRLLGLGVLGGAQGAIGWWMVSSGLTGQMLDVASYRLAVHLGLAFVILGFIAWYVFCLGREERELMQARRGREAKLFSLSTGWMHFAFLQILIGALVAGIDAGRTFTDWPLMAGGFLPVDFWMPELGWRNLFENPGFVQFVHRMVGYLLLGFAVMVWLKGRRSANGATRAAFTGAFIALCAQVVMGITTVLYAAPWQVAIVHQVLAVVVWVLIIRARFLSQYPLAQSVRG
>NZ_CP031598.1|WP_057815310.1|2908366_2909839_-|carboxypeptidase-M32
MSAYDELMAHERETQALAQVAGRLSWDQETVMPRGAAEQRSEESGAMEAVLHARRTDPRVGEWLAAAEAPDEVGAAQLRQIRRAHDRARKVPAELATALARLTSRSQGVWAEARANDDFAAFAPTLEEVVRLKREEAAALAENVTLYDALLDDFEPGATAAMLEALFEDMRPGLVQLRKRALEGVAAEGVSGEFPAEVQLSLARELAGRFGYDRTRGRLDLAVHPFSSGSGDDVRITTRTAADDPFNCIYSTIHETGHACYEQGIDPAYRLTPLGQGVSMGVHESQSRIYENQLGRSPAFCRWLYGEMRARFGDIGVSDEEAFYRAVNRVHRGYIRTEADEVQYNLHIMLRFDLEKALVAGDLAVRDLEAAWNERFLKDFGYPVDKASNGVLQDVHWSVGLFGYFPTYSLGNVYAGCLNKALRAAVPDVDAHLERGDPGPAVEWLHENVQRHGGRYEPREVITLACGGEEPSAGPLMGYLADKFCALYPG
>NZ_CP031598.1|WP_057815311.1|2907159_2908041_+|succinate--CoA-ligase-subunit-alpha
MAILIDSTTRVLVTGITGRIGSFHAQDMIKHGTNVVGGVTPGKGGSTHLDLPVFNTVKGAVAETGADLVVSFVPPPFAADSIMEAADAGIKTCVCIADGIPAQDMIQVKRYMRRYKEDRRMRLIGPNCAGIITPGQAFAGLMPPHIYKPGRIGIVGRSGTLGYEAASQMSERGIGVSSSIGIGGDPINGSSFKDILELFENDPETDAVVLVGEIGGPQEAEAAEYIRDHMTKPVAAYIAGLSAPKGRRMGHAGAIVSAFGESAQEKVDILKEAGVTIVPTPSSFGEVVEKMVA
>NZ_CP031598.1|WP_057815312.1|2905975_2907160_+|malate--CoA-ligase-subunit-beta
MDIHEYQAKEMLKRFGVSTPRGGIAYSPEQAVYRCSELSGDKWVVKAQIHSGARGKAGGVRICATEEEVADAAQWMLGRRLVTHQTGPQGKLVNRLYIEEATSIAQEIYLGFVMDRKLERVVVVASAQGGMEIEEISANEPDSLIRSVVDPAVGMQNFQAREIAFQLGLDPTLIPAAVKTIIGCYRLMSETDANMVEINPLVVTKSNEIVALDAKLAFDDNALFRHPDISELRDKSQEDPRETYAGDRGLNYIGLDGKIGCIVNGAGLAMATLDMIKMAGGEPANFLDVGGGASPERVLMSFKAVLNDRNVEGILVNIFAGINRCDWIAEGVIRAVKELDLQMPLVVRLSGTNVEEGRKLLADSGLNITTASSLAEAAEKVVGEWKAAQMKEAS
>NZ_CP031598.1|WP_057815313.1|2905018_2905960_+|CoA-ester-lyase
MSYTLHPLKKQRLQRSELAVPGSNPSMIDKAADSGVDYIFLDLEDAVAPPDKVQARANIIQALNDIDWKAKGKTMSIRINGLDTHYMYRDVVEIVEQAGQHLDTILVPKVGVPADLYTVETMVSQIEEAMGFTHQIGLEALIETSLGMANVEAIAAAPGRLEALHFGVADYAASTRARTVVIGGLNPDYPGDQWHFALSRMTVACRAYGLRAIDGPFGDFSDPDAYVASAKRAAALGIEGKWAIHPSQIALANDVFSPPEPEVTKARRIIEELKKAAAEGKGAASLDGKMIDAASERMANNVITVADAIAAKG
>NZ_CP031598.1|WP_057815315.1|2904397_2904625_+|hypothetical-protein
MSDHGPITPEQWLGKLFSSRAAREGRVIRRQLRDIDRYIGRDRFEAELARRGYHAVENAGQMVIFCNQEPVRVVL
>NZ_CP031598.1|WP_057815317.1|2903381_2904362_+|D-glycerate-dehydrogenase
MADRTILVTRAWPKEAEERLVAERLGTVTLRHPDTPMSRDEWMAAAQSYDVIMPTVSDKIPAEFYPAAKGKLRVMANYGVGFNHIDIDAARDNGIAVTNTPDVLTDCTADLAMGLLLCAARRIGEGERETRAGQWAGWRPTHMIGKKVSGATIGIIGFGRIGQAMARRAHGGFGMRVVFQDAWDVPDEIKAANGQAEQLGSITEVAAEADFLSLHCPGGADTYKLINAEVFNALKPGAILVNSARGDVVDEDALFDALDSGRVAAAGLDVYHNEPALDPRFLTYGNIVLAPHLGSATDGTRAAMGHRAIDNLKAFLAGETPGDLVT
>NZ_CP031598.1|WP_057815319.1|2902166_2903378_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MNGYQHLFIPGPTNVPEPVRQAMNLPMEDMRAPDFPGFVTGLLTDLKKAYRMETGRVFVFPSSGTGAWESAIQNTLQPGDKVLMSRFGQFSLLWVDMAERLGLDVELCEVDWGKGVPLDDYARILAADTDHKIKAVFATQNETATGVTSDIAGVRAALDACDHPAMLFVDGVSSIASIEFEMEKWGVDLAVSGSQKGFMLPAGLGILGVSEKALEANKALAGSGMARCYFSFEDMIKLNDTGYFPYTPATQLLRGLRCSLDMLLETGMESVWARHHRLAGGVRAAVAAWDGCELVAHGPEWASDTVSAIYVPQGVDARDVISGAYYKYQTSLGTGLNKLMGKAFRIGHLGSLNPVMLCGAISAAEMALVDAGAQIVPGSGVAAAQAHFRDTTPATVAAPAKAA
>NZ_CP031598.1|WP_057815321.1|2901242_2901899_-|response-regulator-transcription-factor
MNDAQTQVDMTAEPLADRPQVIVADRQLIVCQGIGSLVAQIPEVRLGPFATDKAGLKQLLSKTEGPAILILGVRLSDGDLTSVLDVVRKSYPQVMIVVVAEDTEFAFIRTAIKSGANSVCMMSQILTSLPKILGKLVEGHSIVPTDILRKLTSENADSLSRREHEILALLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGAAIAKYVAGNY
>NZ_CP031598.1|WP_057815304.1|2912160_2913024_-|hypothetical-protein
MSFIRSAATAAGLSCSLSLSVAAPLAAQEAVPYSAPNGWDISQLRQGGQVAACEAMRITGMEEGLFFRHDPAETVIGFSSFASAASPFAIDVEMWFDGDRGAGQVYGMEPVEDHNGFTWRGLVMPNSEPWGELDLFASAGTVHFAYDTGTGPTQVSFPLTGSSRASKETYACVQTAGSAPAADTAGPKVIYGSCKLAVDGRVYLDMASGCPIWLENDGSGSFWINTDRDSYLGDWFAEVRPDGSGLASAWWNGVAGATHAQGFLGEDFRLGSAGCWSNARATVCAAR
>NZ_CP031598.1|WP_057815302.1|2913437_2914064_+|thiamine-phosphate-synthase
MAEPEQPQIYLITPPEIELSRFPDTLARVLDAHDVACIRLALSTHDETALSHAADACREVAHARDIAIVINTHFILAERLGLDGVHLTDGARQIRTARKTLGADAVVGAFCGASRHDGMSAGEAGADYVSFGPVGDTALGDGTKAEHDVFEWWSQMIEVPVVAEGALDEDLMRSLAPVTDFFGIGTEIWSADDPAAELGRLIAAMGHG
>NZ_CP031598.1|WP_057815299.1|2914226_2915063_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MSFTWSPEEPAPPFKITAGGWFRVVLRGLTLVAILLTGVVAMMLLRLVERPLHGMHRPWTPFITQVVCRLAFFVLGMRHEAVGERMTARGAVVANHSSWLDIFSLNARKRVYFVSKAEVAGWPGIGFLAKITGTVFIARDPREAKAQQEVFEDRLLAGHKLLFFPEGTSTDGFRVLPFKSTLFQAFFNEALRHEMHIQPVTVIYTAPEGEDPRFYGWWGDMDFGSHALKLLAARRNGSVKVVYHVPVKVEDFATRKALAAHVEQVVRGGMPEARRLSR
>NZ_CP031598.1|WP_057815298.1|2915059_2915827_-|GNAT-family-N-acetyltransferase
MSKGQDQFSVRLAGSDADLRAAQRLRYEVFVEELGGDGPMVDHDARLEQDRFDPFFDHLILTDGAKDDAVVGVYRLLRDDQARQMGQFYSEDEYDLTPLKQSGRRLMELGRSCLAPSYRGGAAMFHLWNGLARYVIENEIEILFGVASFHGTDVEALAQPLSLLHHRHLAPEGLRVRTQAAHYQRMDLLAEDRIDRRAAMLQVPALIKAYLRLGGYVGDGAYIDHAFNTTDICLVMDTERLSETQKNIYSKGITA
>NZ_CP031598.1|WP_057815296.1|2915947_2916130_-|DUF3553-domain-containing-protein
MSDLNSFLEPGMLVEHPRQPDWGTGQVQSNIGGKITVNFQEVGKVVIDGSRVELIPVIKT
>NZ_CP031598.1|WP_082647353.1|2916144_2916759_+|hypothetical-protein
MWSCQLLHPSDKIASLIGSRICHDLISPVGAVANGLELLELSGLPKSPEFSLVSESAGHASARIQFFRLAFGDAEPEQVISGQGVADILAAVYQAGRVDIDWQARGDFARPVVKAALLAVMCVEQALVAGGTIIVTQDDGRWHIRAEAPRLAPDPVLWNILRGEPGPDAVTPAAVQFLLLPHIARQNDMNADPQASDSKVEIRL
>NZ_CP031598.1|WP_057815292.1|2916755_2918027_-|glutamate-5-semialdehyde-dehydrogenase
MTMKDLDNIPALMADIGERAKAAAAQLATARPETKRQALEAAADALWAARGEVMAANEKDLDYGREKGLSDAMMDRLLLTEDRVKSMCEGLRAVAAQDDPVGEVLAEWDMPSGLHIRRVRTPLGVIGVIYESRPNVTADAGALCLKSGNAVILRGGSESFHSSAAIHAALVEGLRSAGLPEDAIQLVPTRDRAAVKEMLTMTGTIDVIVPRGGKGLVGLVQREARVPVFAHLEGIVHIYIDKDADPEKALRVVMNAKTRRTGICGAAECLLIHRKVADTIGQGLIRALIDAGVEVRADAALQVIAGTQAAAEDDWGREYLDSIIAAKVVEDIDGAIAHIRQYHSQHTDCIITEDDAAAEQFFAELDSAILMRNASTQFADGGEFGMGAEIGIATGKMHARGPVGAAQLTSFKYLVEGDGATRS
>NZ_CP031598.1|WP_057815291.1|2918068_2919175_-|glutamate-5-kinase
MAALSDAKRIVVKIGSALLVDRGTGQLRSDWLKALVDDVARIRARGTDVILVSSGSIALGRGALGLPMTELTLEQSQAAAAVGQIQLAHAYDRALSEHGLRAAQVLVTLEDSADRRRYLNSRATLEQLLKLGAVPIVNENDTVATDEIRYGDNDRMAAQVAVTAGADQLILLSDVDGFYSGNPSDDPAATRFDVISEITPEIEAMAGDAGSGLSKGGMKTKLMAARTATAAGCDMAITEGSVLNPLSALEKGAPATWFTAQGDPHQKRKAWIAAMKPKGRITVDDGAARALQGGSSLLPAGVTGVTGRFGRGDPVEVADSTGRKLGQGLTRYDARDAALIKGLKTQDIEPRLGYPARGPLIHRDDMAF
>NZ_CP031598.1|WP_057815290.1|2919162_2920200_-|GTPase-ObgE
MKFLDLAKVYIRSGSGGGGCISFRREKFVEYGGPDGGDGGKGGSVYAEAVEGLNTLIDFRYQQHFFADNGQPGMGRQRTGKDGEDIVLRVPVGTEILDEDQETVIADFTEVGQRIELAHGGNGGWGNLRFKTSTNQAPRRSNPGQEGVERTLWLRLKLIADVGLVGLPNAGKSTFLAATSNARPKIADYPFTTLHPNLGVVEVDGVEFVVADIPGLIDGAHEGKGLGDLFLGHVERCAVLLHLVDGTSGTLVEDYQTIINELEAYGGALAEKPRVTVLNKIDALDDEERTFLRDEVQAAGAENVMLMSGVSREGVTEVLRALRAQIDDGRLREKATDEEPEPWQP
>NZ_CP031598.1|WP_057815288.1|2920233_2920773_-|GNAT-family-N-acetyltransferase
MKLETIDMQPTIAAGRFDLRPPRASDAGLLAHYVGDERVARNTSSIPHPLPPGTIEAFLARVAAPDRIETVWIIDGSRDGGSEVMGAIGMKKVDEGQCEIGYWVAHPFWNTGVASEVVGALLAANPCKCRTVFASVFQDNPVSARVVTNHGFNYLGDAETFSVARNAKVPTWTYSRKMD

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1670454 : 1735296

Streptococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151175235.1\|1670454_1671384_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	2.2e-31	37.2
WP_057822042.1\|1671787_1672099_+	hypothetical protein	NA	NA	NA	NA
WP_057822041.1\|1672152_1672752_+	cytochrome c	NA	NA	NA	NA
WP_057822040.1\|1672754_1673660_+	cytochrome c	NA	NA	NA	NA
WP_057822039.1\|1673695_1674121_+	cytochrome c	NA	NA	NA	NA
WP_057822037.1\|1674188_1676540_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	9.8e-89	35.5
WP_151175218.1\|1676699_1677524_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_057822016.1\|1677657_1678017_+	hypothetical protein	NA	NA	NA	NA
WP_057822014.1\|1678110_1680303_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_057822012.1\|1680299_1683479_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_057822018.1\|1683490_1683892_+	copper-binding protein	NA	NA	NA	NA
WP_151175219.1\|1684221_1684929_-\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	1.1e-19	31.9
WP_057821622.1\|1685280_1686165_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_074940793.1\|1686272_1687022_+	hypothetical protein	NA	NA	NA	NA
WP_057821618.1\|1687018_1687597_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_057821616.1\|1687596_1688922_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_057821614.1\|1688982_1690020_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA
WP_057821612.1\|1691237_1692134_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_057821611.1\|1692144_1692915_-	carbon-nitrogen hydrolase family protein	M1I6H3	Paramecium_bursaria_Chlorella_virus	1.4e-07	30.8
WP_057821609.1\|1692914_1693946_-	alcohol dehydrogenase catalytic domain-containing protein	M1PHA2	Moumouvirus	1.7e-24	26.7
WP_057821607.1\|1693938_1694739_-	ABC transporter permease	NA	NA	NA	NA
WP_057821605.1\|1694735_1695590_-	ABC transporter permease	NA	NA	NA	NA
WP_057821603.1\|1695586_1696633_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	2.6e-25	35.7
WP_057821602.1\|1696696_1697767_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_057821601.1\|1697791_1698745_-	agmatinase	NA	NA	NA	NA
WP_057821599.1\|1699788_1700850_-	response regulator transcription factor	NA	NA	NA	NA
WP_057821597.1\|1700846_1702619_-	PAS domain-containing protein	B5LWN0	Feldmannia_species_virus	2.1e-11	27.2
WP_057821625.1\|1702615_1703071_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_057821596.1\|1703300_1704284_+	hypothetical protein	NA	NA	NA	NA
WP_151175220.1\|1704290_1705076_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_057821592.1\|1705147_1706155_+	DUF3137 domain-containing protein	NA	NA	NA	NA
WP_151175221.1\|1706063_1708490_+	VWA domain-containing protein	NA	NA	NA	NA
WP_144435887.1\|1708655_1710623_+	hypothetical protein	NA	NA	NA	NA
WP_057821587.1\|1711034_1711910_-	ABC transporter permease	NA	NA	NA	NA
WP_057821586.1\|1711914_1712781_-	ABC transporter permease	NA	NA	NA	NA
WP_057821584.1\|1712780_1713851_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.9e-27	34.3
WP_143100579.1\|1713915_1714980_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_143100576.1\|1715029_1717720_-	hypothetical protein	NA	NA	NA	NA
WP_057821578.1\|1717924_1718815_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_151175222.1\|1718898_1719606_-\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	2.9e-20	31.9
WP_151175223.1\|1719871_1720579_-\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	3.2e-19	30.9
WP_057814294.1\|1722043_1722976_-	gluconolaconase	NA	NA	NA	NA
WP_057814287.1\|1723007_1724735_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
WP_082647296.1\|1724731_1725469_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_057814273.1\|1725620_1727330_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA
WP_057814265.1\|1727342_1728227_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_057814256.1\|1728223_1729255_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_057814249.1\|1729254_1730001_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.8e-12	28.5
WP_057814244.1\|1729993_1730722_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.9e-15	26.1
WP_082647295.1\|1730718_1731996_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_057814232.1\|1732063_1733125_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_057814231.1\|1733121_1733868_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_057814393.1\|1733896_1734877_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
WP_082647294.1\|1734945_1735296_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1738695 : 1793485

Acidithiobacillus_phage(22.22%)

terminase,transposase,integrase

attL 1734535:1734552|attR 1780617:1780634

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1734535:1734552	attL	NA	NA	NA	NA
WP_082647292.1\|1738695_1740162_+\|integrase	site-specific integrase	Q859H7	Micromonospora_phage	2.0e-15	26.5
WP_143100399.1\|1740213_1741128_-	hypothetical protein	NA	NA	NA	NA
WP_057814225.1\|1741169_1742180_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_143100400.1\|1742451_1743105_+	hypothetical protein	NA	NA	NA	NA
WP_143100401.1\|1744752_1745121_+	hypothetical protein	NA	NA	NA	NA
WP_057814219.1\|1745217_1746156_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_143100402.1\|1746152_1748615_-	ATP-binding cassette domain-containing protein	A0A2H4UU96	Bodo_saltans_virus	1.3e-06	32.0
WP_074940032.1\|1749011_1749848_+	cupin-like domain-containing protein	NA	NA	NA	NA
WP_057814214.1\|1749847_1752886_+	type 2 lantipeptide synthetase LanM	NA	NA	NA	NA
WP_057814213.1\|1752882_1753635_+	hypothetical protein	NA	NA	NA	NA
WP_074940034.1\|1754158_1755031_-	hypothetical protein	NA	NA	NA	NA
WP_057814212.1\|1755468_1756176_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	6.0e-26	33.1
WP_057814391.1\|1756866_1758378_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_082647291.1\|1758594_1760157_+	PAS domain-containing hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.8e-09	23.6
WP_057814208.1\|1760173_1760914_+	response regulator	W8CYM9	Bacillus_phage	5.4e-25	33.5
WP_143100420.1\|1760922_1762248_+	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	1.7e-37	30.6
WP_057814207.1\|1762543_1762819_+	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_057814205.1\|1762818_1763379_+	STAS domain-containing protein	NA	NA	NA	NA
WP_057814203.1\|1763375_1763942_+	hypothetical protein	NA	NA	NA	NA
WP_057814201.1\|1763947_1764202_+	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_057814200.1\|1764255_1765335_+	glutamine synthetase	A0A0G2Y5U6	Acanthamoeba_polyphaga_mimivirus	6.5e-80	45.4
WP_057814199.1\|1765679_1767194_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_057814198.1\|1767190_1767445_-	hypothetical protein	NA	NA	NA	NA
WP_057814196.1\|1768086_1768677_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_057814194.1\|1768866_1770798_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_057814187.1\|1770879_1771251_+	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_057814183.1\|1771315_1772116_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_057814181.1\|1772403_1773126_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_057814179.1\|1773277_1773493_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_082647290.1\|1773489_1774077_+	OsmC family protein	NA	NA	NA	NA
WP_057814177.1\|1774076_1774343_+	hypothetical protein	NA	NA	NA	NA
WP_057814175.1\|1775187_1775421_-	hypothetical protein	NA	NA	NA	NA
WP_057814174.1\|1775746_1776046_+	DUF3489 domain-containing protein	NA	NA	NA	NA
WP_057814173.1\|1776045_1776453_+	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	8.9e-14	35.5
WP_082647289.1\|1776404_1776695_+	recombinase family protein	Q9JML1	Wolbachia_phage	1.9e-18	61.1
WP_057814171.1\|1776743_1777535_-	AAA family ATPase	A0A059NT77	Lactococcus_phage	4.1e-31	34.6
WP_057814387.1\|1777524_1779054_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_057814170.1\|1779784_1780252_-	DUF411 domain-containing protein	NA	NA	NA	NA
WP_057814169.1\|1780263_1782549_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.5e-122	38.6
1780617:1780634	attR	NA	NA	NA	NA
WP_057814168.1\|1782698_1783127_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_057814166.1\|1783126_1783450_+	YnfA family protein	A0A2H4JF35	uncultured_Caudovirales_phage	2.3e-20	53.6
WP_057814165.1\|1783509_1783776_-	hypothetical protein	NA	NA	NA	NA
WP_057814164.1\|1784083_1785562_-\|terminase	phage terminase large subunit	A0A1B1IUW7	uncultured_Mediterranean_phage	1.9e-53	32.4
WP_057814157.1\|1785973_1787353_-	site-specific DNA-methyltransferase	K4HZA5	Acidithiobacillus_phage	1.1e-74	42.3
WP_057814155.1\|1787796_1788066_+	DUF3489 domain-containing protein	NA	NA	NA	NA
WP_057814154.1\|1788065_1788473_+	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	1.5e-13	36.2
WP_057814152.1\|1788469_1790140_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	5.7e-83	47.1
WP_057814150.1\|1790805_1791684_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_057814148.1\|1791695_1792862_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	7.6e-42	34.2
WP_057814147.1\|1792858_1793485_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.5e-28	40.3

DBSCAN-SWA_3

2641241 : 2675456

Salmonella_phage(11.11%)

terminase,portal,head,capsid,integrase,tail

attL 2632581:2632595|attR 2647090:2647104

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2632581:2632595	attL	NA	NA	NA	NA
WP_057816665.1\|2641241_2642204_+\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	1.4e-62	43.3
WP_057816666.1\|2642200_2642425_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_057816667.1\|2642461_2642716_-	hypothetical protein	NA	NA	NA	NA
WP_057816668.1\|2642870_2643194_-	hypothetical protein	NA	NA	NA	NA
WP_057816669.1\|2643186_2643777_-	hypothetical protein	NA	NA	NA	NA
WP_057816670.1\|2643773_2644100_-	hypothetical protein	NA	NA	NA	NA
WP_057816671.1\|2644096_2644486_-	hypothetical protein	A0A076GCY8	Sinorhizobium_phage	1.8e-16	40.8
WP_074939862.1\|2644813_2645371_-	hypothetical protein	NA	NA	NA	NA
WP_057816673.1\|2645520_2646264_-	hypothetical protein	A0A2H4JH28	uncultured_Caudovirales_phage	3.3e-51	60.0
WP_057816674.1\|2646402_2646651_-	hypothetical protein	NA	NA	NA	NA
WP_143100352.1\|2646650_2646983_-	hypothetical protein	NA	NA	NA	NA
WP_143100351.1\|2646979_2647330_-	hypothetical protein	NA	NA	NA	NA
2647090:2647104	attR	NA	NA	NA	NA
WP_057816677.1\|2647579_2647864_-	hypothetical protein	NA	NA	NA	NA
WP_057816678.1\|2647860_2648094_-	hypothetical protein	NA	NA	NA	NA
WP_057816679.1\|2648108_2648393_-	hypothetical protein	NA	NA	NA	NA
WP_143100350.1\|2648607_2649009_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_057816681.1\|2649023_2649230_+	hypothetical protein	NA	NA	NA	NA
WP_143100349.1\|2649333_2649804_+	hypothetical protein	NA	NA	NA	NA
WP_057816683.1\|2649968_2651135_+	site-specific DNA-methyltransferase	A0A1P8DTZ3	Salmonella_phage	2.9e-89	50.3
WP_143100348.1\|2651275_2651599_+	hypothetical protein	NA	NA	NA	NA
WP_143100347.1\|2651547_2652651_+	hypothetical protein	NA	NA	NA	NA
WP_082647401.1\|2652805_2653984_+	DNA (cytosine-5-)-methyltransferase	A0A1P8DJM9	Virus_Rctr41k	1.7e-41	32.5
WP_057816687.1\|2653980_2654418_+	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_057816688.1\|2654410_2654788_+	hypothetical protein	NA	NA	NA	NA
WP_057816689.1\|2654784_2655243_+	hypothetical protein	NA	NA	NA	NA
WP_074939773.1\|2655235_2657650_+	DEAD/DEAH box helicase	A0A2I7RAG9	Vibrio_phage	6.0e-25	41.0
WP_074939770.1\|2657636_2658572_+	hypothetical protein	A0A0H5AWB1	Pseudomonas_phage	1.5e-53	40.1
WP_057816692.1\|2658950_2659523_+	hypothetical protein	NA	NA	NA	NA
WP_143100346.1\|2661028_2661364_+	hypothetical protein	NA	NA	NA	NA
WP_057816694.1\|2661341_2663108_+\|terminase	terminase	B0VK29	Azospirillum_phage	2.5e-129	42.0
WP_057816695.1\|2663117_2665082_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	2.7e-132	44.6
WP_057816696.1\|2665136_2665361_+	hypothetical protein	NA	NA	NA	NA
WP_057816697.1\|2665360_2666698_+\|portal	phage portal protein	F8TVA0	EBPR_siphovirus	5.0e-130	58.0
WP_057816698.1\|2666694_2667549_+	hypothetical protein	F8TVA1	EBPR_siphovirus	3.6e-25	42.0
WP_057816699.1\|2667548_2667875_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_057816700.1\|2667906_2668473_+	hypothetical protein	M4QNT5	Tetraselmis_viridis_virus	3.8e-23	44.2
WP_057816701.1\|2668508_2669081_+	hypothetical protein	Q71TJ0	Escherichia_phage	2.2e-26	35.6
WP_074939767.1\|2669077_2669407_+\|head,tail	head-tail adaptor protein	A0A141GEW5	Brucella_phage	3.0e-12	44.3
WP_057816703.1\|2669403_2669817_+	DUF3168 domain-containing protein	B4UTQ1	Rhizobium_phage	5.8e-21	44.9
WP_057816704.1\|2669816_2670236_+	hypothetical protein	A0A141GEW6	Brucella_phage	4.7e-18	39.9
WP_057816705.1\|2670232_2670499_-	hypothetical protein	NA	NA	NA	NA
WP_057816706.1\|2670685_2671129_+	hypothetical protein	NA	NA	NA	NA
WP_057816707.1\|2671128_2671668_+	gene transfer agent family protein	NA	NA	NA	NA
WP_057816708.1\|2671664_2673929_+\|tail	phage tail tape measure protein	A0A1B0T6I6	Pelagibaca_phage	6.0e-19	29.7
WP_143100345.1\|2673925_2674546_+	hypothetical protein	NA	NA	NA	NA
WP_057816710.1\|2674542_2675055_+	DUF1833 domain-containing protein	NA	NA	NA	NA
WP_143100344.1\|2674901_2675456_+	NlpC/P60 family protein	A5A3R0	Burkholderia_phage	3.2e-06	32.1

DBSCAN-SWA_4

3828758 : 3848460

Acidithiobacillus_phage(40.0%)

tRNA,transposase,integrase,protease

attL 3833370:3833384|attR 3855909:3855923

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057819774.1\|3828758_3829412_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_143100560.1\|3829372_3829744_-	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_057819772.1\|3829740_3830202_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_057819770.1\|3830235_3830619_-	NADH:ubiquinone oxidoreductase subunit NDUFA12	NA	NA	NA	NA
WP_057819768.1\|3830719_3831610_-	cation transporter	NA	NA	NA	NA
WP_057819766.1\|3831776_3833039_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.5e-133	57.2
WP_057819764.1\|3833184_3833817_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	9.8e-60	60.5
3833370:3833384	attL	NA	NA	NA	NA
WP_057819762.1\|3834072_3834411_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_057819760.1\|3834501_3835386_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_005978431.1\|3835468_3835687_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_057819758.1\|3835701_3836280_+	septum formation protein Maf	NA	NA	NA	NA
WP_057819756.1\|3836276_3837299_+	hypothetical protein	NA	NA	NA	NA
WP_057819754.1\|3837295_3837478_+	DNA gyrase inhibitor YacG	NA	NA	NA	NA
WP_151175226.1\|3837983_3838754_-	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	2.6e-67	51.2
WP_151175227.1\|3838766_3840296_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	5.5e-117	45.5
WP_083414365.1\|3840210_3841575_+\|integrase	tyrosine-type recombinase/integrase	B7SYF8	Stenotrophomonas_phage	1.0e-69	40.7
WP_057821888.1\|3841831_3844027_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_143100585.1\|3844447_3845020_+	hypothetical protein	NA	NA	NA	NA
WP_057821884.1\|3845122_3845332_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_082647577.1\|3845367_3845595_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_082647576.1\|3845678_3847418_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_082647575.1\|3847371_3848460_+\|integrase	site-specific integrase	NA	NA	NA	NA
3855909:3855923	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4184859 : 4195307

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057817904.1\|4184859_4186206_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.2e-06	37.2
WP_057817902.1\|4186209_4187214_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_057817900.1\|4187250_4188435_-	nucleotide sugar dehydrogenase	M1IB49	Acanthocystis_turfacea_Chlorella_virus	8.7e-110	55.3
WP_057817898.1\|4188520_4189402_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	3.3e-90	58.0
WP_057817896.1\|4189398_4190253_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.9e-30	36.0
WP_057817894.1\|4190254_4191301_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.8e-93	52.1
WP_057817891.1\|4191297_4191867_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.5e-40	46.7
WP_057817889.1\|4192034_4193255_-	hypothetical protein	NA	NA	NA	NA
WP_057817887.1\|4194230_4195307_-	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	3.0e-40	35.3

DBSCAN-SWA_6

4897599 : 4916688

Rhodobacter_phage(12.5%)

terminase,protease,portal,capsid,head,integrase,tail

attL 4897554:4897571|attR 4915025:4915042

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4897554:4897571	attL	NA	NA	NA	NA
WP_074939969.1\|4897599_4898700_-\|integrase	tyrosine-type recombinase/integrase	I3UM24	Rhodobacter_phage	2.8e-70	44.0
WP_074939994.1\|4898669_4898924_-	hypothetical protein	NA	NA	NA	NA
WP_143100385.1\|4898934_4899135_-	hypothetical protein	NA	NA	NA	NA
WP_082647242.1\|4899134_4899842_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_143100384.1\|4899878_4900394_-	hypothetical protein	NA	NA	NA	NA
WP_057812958.1\|4900490_4900937_-	hypothetical protein	NA	NA	NA	NA
WP_074939966.1\|4901048_4901249_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_144435869.1\|4901251_4901521_+	hypothetical protein	NA	NA	NA	NA
WP_057812954.1\|4901543_4901900_-	hypothetical protein	NA	NA	NA	NA
WP_057812952.1\|4901896_4902451_-	hypothetical protein	NA	NA	NA	NA
WP_057812950.1\|4904859_4906467_-\|terminase	terminase large subunit	Q6DMU3	Streptococcus_phage	3.5e-69	32.9
WP_057812948.1\|4906466_4906901_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_057812945.1\|4906897_4907215_-\|head	phage head closure protein	NA	NA	NA	NA
WP_057812943.1\|4907211_4907628_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_057812941.1\|4907624_4908035_-	hypothetical protein	NA	NA	NA	NA
WP_057812939.1\|4908034_4908352_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_057812937.1\|4908361_4908841_-	hypothetical protein	NA	NA	NA	NA
WP_074939961.1\|4908837_4909197_-	HNH endonuclease	Q7Y5F7	Xanthomonas_virus	2.6e-17	63.6
WP_057812935.1\|4909507_4909891_-	hypothetical protein	A0A142K633	Streptomyces_phage	2.7e-12	39.3
WP_057812933.1\|4909903_4911070_-\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	6.2e-44	31.5
WP_057812931.1\|4911071_4911578_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.2e-21	39.5
WP_057812929.1\|4911577_4911970_-	hypothetical protein	NA	NA	NA	NA
WP_057812927.1\|4911959_4913174_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	1.7e-39	31.9
WP_057813305.1\|4913371_4913596_-	hypothetical protein	NA	NA	NA	NA
WP_074939959.1\|4913673_4914357_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_074939956.1\|4914353_4914659_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_057812923.1\|4915077_4916688_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	5.3e-17	26.1
4915025:4915042	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP031600

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2946 : 61930

Planktothrix_phage(40.0%)

transposase,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057821941.1\|2946_4095_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_057821939.1\|4219_5104_+	DUF1403 family protein	NA	NA	NA	NA
WP_057821937.1\|5106_5703_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.8e-13	26.9
WP_074940839.1\|5798_6050_-	hypothetical protein	NA	NA	NA	NA
WP_151175218.1\|6066_6891_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_151175244.1\|7473_8829_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_057822043.1\|9316_9925_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_057822044.1\|10162_10486_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_082647583.1\|10643_11057_+	hypothetical protein	NA	NA	NA	NA
WP_057822047.1\|11123_11939_+	dioxygenase	NA	NA	NA	NA
WP_057822049.1\|11947_12445_+	hypothetical protein	NA	NA	NA	NA
WP_057822051.1\|12487_13390_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_057822052.1\|13389_14037_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_151175244.1\|14465_15821_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_038147410.1\|16116_16998_+	AAA family ATPase	NA	NA	NA	NA
WP_038147409.1\|16994_17786_+	hypothetical protein	NA	NA	NA	NA
WP_151175244.1\|17841_19197_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_057821513.1\|20104_20467_-	STAS/SEC14 domain-containing protein	NA	NA	NA	NA
WP_057821514.1\|20438_21404_-	cation transporter	NA	NA	NA	NA
WP_057821516.1\|21393_22164_-	transglutaminase family protein	NA	NA	NA	NA
WP_057821518.1\|22233_22812_-	cation transporter	NA	NA	NA	NA
WP_057821520.1\|23772_24816_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_057821522.1\|25017_26316_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_057821525.1\|27841_28501_-	Fe2+-dependent dioxygenase	A0A1D8KSK5	Synechococcus_phage	3.0e-11	39.1
WP_057821526.1\|28504_29431_-	hypothetical protein	NA	NA	NA	NA
WP_057821528.1\|29561_29888_-	YnfA family protein	A0A2H4JF35	uncultured_Caudovirales_phage	1.2e-21	51.0
WP_057821575.1\|29889_30318_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_057821530.1\|30890_32993_+	copper-binding protein	NA	NA	NA	NA
WP_057821532.1\|33092_34244_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_057821534.1\|34240_34726_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_057821577.1\|34722_35274_-	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_057821536.1\|35278_37270_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_057821538.1\|37892_38462_+	SCO family protein	NA	NA	NA	NA
WP_057821540.1\|38467_38890_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_057821546.1\|40039_40666_+	SCO family protein	NA	NA	NA	NA
WP_057821548.1\|40662_42036_+	M23 family metallopeptidase	G9BW84	Planktothrix_phage	2.8e-19	45.6
WP_057821549.1\|42039_42498_+	hypothetical protein	NA	NA	NA	NA
WP_057821551.1\|42520_43303_+	ZIP family metal transporter	NA	NA	NA	NA
WP_057821553.1\|43307_43781_+	signal peptidase II	NA	NA	NA	NA
WP_143100572.1\|43984_45349_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_008282832.1\|45348_45516_+	hypothetical protein	NA	NA	NA	NA
WP_057821558.1\|45540_47478_+	penicillin amidase	NA	NA	NA	NA
WP_057821560.1\|47474_48467_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_082647565.1\|48748_49375_+	SCO family protein	NA	NA	NA	NA
WP_057821563.1\|49378_50287_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_057821565.1\|50563_51034_-	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA
WP_143100571.1\|51131_53009_+	cytochrome C	NA	NA	NA	NA
WP_057821569.1\|53008_53884_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_057821571.1\|53880_54663_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.2e-20	34.2
WP_057821574.1\|54662_55421_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_151175244.1\|55679_57035_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_028288640.1\|57214_58849_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_038147410.1\|58850_59732_+	AAA family ATPase	NA	NA	NA	NA
WP_038147409.1\|59728_60520_+	hypothetical protein	NA	NA	NA	NA
WP_151175245.1\|60574_61930_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP031601

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 5294

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009503872.1\|3270_4638_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_009503873.1\|4634_5294_-	response regulator transcription factor	W8CYM9	Bacillus_phage	5.8e-23	31.4

DBSCAN-SWA_2

11353 : 13261

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009503880.1\|11353_13261_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.6e-60	28.8

DBSCAN-SWA_3

21742 : 25766

Caulobacter_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009506871.1\|21742_22645_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.7e-44	37.1
WP_057821996.1\|22641_22917_+	hypothetical protein	A0A1V0EEV1	Caulobacter_phage	3.9e-05	49.1
WP_037239988.1\|22940_23150_+	hypothetical protein	NA	NA	NA	NA
WP_037239991.1\|23238_23628_+	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_071675838.1\|23783_25766_+	chromosome partitioning protein ParB	A0A0F7L836	uncultured_marine_virus	1.5e-05	34.5

DBSCAN-SWA_4

30614 : 32535

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057821757.1\|30614_31403_-	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-24	34.0
WP_057821748.1\|31536_32535_+	hypothetical protein	A0A2R8FDS8	Brazilian_cedratvirus	1.3e-18	29.1

DBSCAN-SWA_5

36631 : 37183

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057821753.1\|36631_37183_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.3e-28	39.2

DBSCAN-SWA_6

54808 : 60042

Ruegeria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074940726.1\|54808_59071_+	methyltransferase	A0A1X9HW54	Ruegeria_phage	8.7e-11	25.4
WP_037240036.1\|59192_59579_+	hypothetical protein	NA	NA	NA	NA
WP_057822078.1\|59580_60042_+	hypothetical protein	A0A1B1IUL8	uncultured_Mediterranean_phage	1.9e-33	57.8

DBSCAN-SWA_7

65188 : 67927

Phaeocystis_globosa_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037240046.1\|65188_66175_-	ATP-binding protein	R4TQL5	Phaeocystis_globosa_virus	2.4e-20	32.4
WP_037240049.1\|66997_67927_+	DUF2493 domain-containing protein	A0A291L9X7	Bordetella_phage	4.8e-07	34.8

DBSCAN-SWA_8

75003 : 76146

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057821957.1\|75003_76146_+	exonuclease SbcCD subunit D	A0A0A0PQ58	Bacillus_phage	1.1e-05	25.2

DBSCAN-SWA_9

87952 : 88645

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082647578.1\|87952_88645_+	hypothetical protein	A0A2H4J456	uncultured_Caudovirales_phage	9.4e-40	46.0

DBSCAN-SWA_10

95116 : 144495

Bacillus_phage(20.0%)

integrase,protease,transposase

attL 132202:132215|attR 142652:142665

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057822092.1\|95116_96205_-	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	1.7e-27	58.6
WP_151175226.1\|96410_97181_-	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	2.6e-67	51.2
WP_151175227.1\|97193_98723_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	5.5e-117	45.5
WP_074940787.1\|99022_101398_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_043772477.1\|101387_101666_-	type IV secretion protein VirB3	NA	NA	NA	NA
WP_057821668.1\|101658_101952_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_057821666.1\|101948_102563_-	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	1.1e-20	55.9
WP_057821665.1\|102606_102975_-	hypothetical protein	NA	NA	NA	NA
WP_057821672.1\|103185_103437_+	hypothetical protein	NA	NA	NA	NA
WP_057821663.1\|103561_103819_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_057821661.1\|103987_104227_+	hypothetical protein	NA	NA	NA	NA
WP_074940789.1\|104333_104855_-	hypothetical protein	NA	NA	NA	NA
WP_057821659.1\|105329_106214_-	transglutaminase family protein	NA	NA	NA	NA
WP_143100574.1\|106435_106744_-	hypothetical protein	NA	NA	NA	NA
WP_057821670.1\|107672_108479_-	transglutaminase family protein	NA	NA	NA	NA
WP_143100573.1\|108513_109518_-	hypothetical protein	NA	NA	NA	NA
WP_082647569.1\|109514_109934_-	hypothetical protein	NA	NA	NA	NA
WP_082647567.1\|110264_111353_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_057821650.1\|111349_112417_-\|protease	FtsH protease activity modulator HflK	A0A2I7S9Z3	Vibrio_phage	2.5e-07	25.4
WP_057821648.1\|112524_112869_-	hypothetical protein	NA	NA	NA	NA
WP_082647568.1\|112865_113174_-	hypothetical protein	NA	NA	NA	NA
WP_057821644.1\|113453_113879_+	hypothetical protein	NA	NA	NA	NA
WP_057821642.1\|113968_114289_+	hypothetical protein	NA	NA	NA	NA
WP_057821640.1\|114500_114689_+	hypothetical protein	NA	NA	NA	NA
WP_057821638.1\|114747_115485_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_057821636.1\|115635_115872_+	hypothetical protein	NA	NA	NA	NA
WP_057821634.1\|116005_116293_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	6.9e-21	56.4
WP_057821633.1\|116337_117975_+	chaperonin GroEL	A0A240F779	uncultured_virus	2.1e-167	57.9
WP_057821631.1\|118486_119797_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.7e-61	38.4
WP_081710569.1\|119979_121518_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	4.0e-06	22.9
WP_081896185.1\|121661_122204_-	hypothetical protein	NA	NA	NA	NA
WP_037239957.1\|122405_123227_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_051922135.1\|123223_124225_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.6e-26	33.8
WP_037239958.1\|124247_125084_-	hypothetical protein	NA	NA	NA	NA
WP_037239960.1\|125153_126203_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_057821629.1\|126211_127402_-	alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	NA	NA	NA	NA
WP_037239963.1\|127398_128136_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.7e-13	28.6
WP_037239966.1\|128132_128969_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	7.9e-09	30.9
WP_037239970.1\|128953_129841_-	hypothetical protein	NA	NA	NA	NA
WP_051922137.1\|129837_131028_-	hypothetical protein	NA	NA	NA	NA
WP_081896186.1\|131029_131644_-	hypothetical protein	NA	NA	NA	NA
WP_037239976.1\|131612_132086_-	hypothetical protein	NA	NA	NA	NA
132202:132215	attL	NA	NA	NA	NA
WP_081896187.1\|132282_133200_-	phosphonate metabolism transcriptional regulator PhnF	NA	NA	NA	NA
WP_051922139.1\|133692_134652_-	hypothetical protein	NA	NA	NA	NA
WP_082647584.1\|135102_136473_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_051922089.1\|136489_137356_+	AAA family ATPase	NA	NA	NA	NA
WP_114284449.1\|137352_138363_+	TniQ family protein	NA	NA	NA	NA
WP_037240140.1\|138379_138991_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	7.1e-15	27.2
WP_037239259.1\|139038_139923_-	DUF1403 family protein	NA	NA	NA	NA
WP_100053156.1\|140202_141189_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_009503865.1\|141564_141960_-	PIN domain-containing protein	NA	NA	NA	NA
WP_009503866.1\|141949_142177_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_009503867.1\|142385_143579_+	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	3.0e-118	54.3
142652:142665	attR	NA	NA	NA	NA
WP_009503868.1\|143562_144495_+	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	9.1e-22	31.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031599

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP031598

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP031600

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP031601

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection