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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP038221 Burkholderia pseudomallei strain Yap4 chromosome 2, complete sequence 2 crisprs cas3,csa3,DinG 0 0 183 0
NZ_CP038220 Burkholderia pseudomallei strain Yap4 chromosome 1, complete sequence 0 crisprs WYL,cas3,DEDDh,csa3,RT,DinG 0 0 6 0

Results visualization

1. NZ_CP038221
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038221_1 915194-915317 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038221_2 1255700-1255792 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 31222 25 Vibrio_phage(100.0%) plate NA
DBSCAN-SWA_2 69038 : 75443 5 Euproctis_pseudoconspersa_nucleopolyhedrovirus(33.33%) NA NA
DBSCAN-SWA_3 88591 : 94194 4 uncultured_virus(66.67%) NA NA
DBSCAN-SWA_4 104107 : 106224 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_5 111898 : 113746 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_6 119929 : 121870 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_7 130142 : 130964 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_8 156041 : 160261 3 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_9 169922 : 171635 1 Micromonas_pusilla_virus(100.0%) NA NA
DBSCAN-SWA_10 198717 : 204720 8 Leptospira_phage(33.33%) transposase NA
DBSCAN-SWA_11 208277 : 209327 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_12 212855 : 220763 6 Burkholderia_virus(33.33%) transposase NA
DBSCAN-SWA_13 248376 : 248928 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_14 253467 : 254565 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_15 290086 : 291229 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_16 326070 : 327930 1 Hepacivirus(100.0%) NA NA
DBSCAN-SWA_17 337723 : 343200 3 Leptospira_phage(50.0%) NA NA
DBSCAN-SWA_18 355593 : 357288 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_19 365194 : 366739 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_20 371396 : 372713 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_21 376572 : 378687 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_22 390360 : 391878 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_23 397407 : 398451 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_24 407431 : 408250 1 Pithovirus(100.0%) NA NA
DBSCAN-SWA_25 430502 : 433427 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_26 438146 : 438842 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_27 442980 : 444594 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_28 458440 : 460069 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_29 478334 : 479630 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_30 499494 : 502422 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_31 517020 : 518889 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_32 540393 : 543962 3 Burkholderia_virus(50.0%) NA NA
DBSCAN-SWA_33 549510 : 558832 13 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_34 570058 : 571225 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_35 585397 : 658083 59 Ralstonia_phage(22.22%) transposase,plate,holin NA
DBSCAN-SWA_36 666793 : 677411 8 Burkholderia_virus(33.33%) NA NA
DBSCAN-SWA_37 696381 : 697110 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_38 730548 : 732792 2 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_39 742100 : 745748 5 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_40 749803 : 751691 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_41 758022 : 761171 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_42 774882 : 781225 3 Acanthamoeba_polyphaga_mimivirus(50.0%) NA NA
DBSCAN-SWA_43 787573 : 790015 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_44 814746 : 817683 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_45 828461 : 830267 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_46 839691 : 841476 1 Roseobacter_phage(100.0%) NA NA
DBSCAN-SWA_47 858209 : 859610 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_48 869639 : 875939 4 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_49 879866 : 881621 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_50 889408 : 891724 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_51 897580 : 898438 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_52 913914 : 914259 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_53 921243 : 931046 7 Sinorhizobium_phage(66.67%) NA NA
DBSCAN-SWA_54 962006 : 963068 1 Cronobacter_phage(100.0%) NA NA
DBSCAN-SWA_55 993862 : 994900 1 Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage(100.0%) transposase NA
DBSCAN-SWA_56 1000315 : 1001818 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_57 1006706 : 1008826 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_58 1027807 : 1028731 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_59 1032041 : 1033163 1 unidentified_phage(100.0%) NA NA
DBSCAN-SWA_60 1036641 : 1091578 44 Stx2-converting_phage(28.57%) transposase,plate NA
DBSCAN-SWA_61 1096059 : 1104193 3 Ralstonia_phage(50.0%) NA NA
DBSCAN-SWA_62 1118746 : 1122716 5 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_63 1132660 : 1134322 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_64 1141237 : 1142098 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_65 1149527 : 1150736 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_66 1155276 : 1159545 4 Moraxella_phage(50.0%) NA NA
DBSCAN-SWA_67 1169142 : 1170960 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_68 1177564 : 1179181 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_69 1194621 : 1196124 1 Bacillus_phage(100.0%) protease NA
DBSCAN-SWA_70 1227434 : 1231284 4 Klebsiella_phage(50.0%) NA NA
DBSCAN-SWA_71 1238440 : 1243000 7 Musca_hytrovirus(50.0%) NA NA
DBSCAN-SWA_72 1259309 : 1263588 4 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_73 1267061 : 1270292 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_74 1276143 : 1276842 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_75 1281252 : 1282944 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_76 1287630 : 1288578 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_77 1294944 : 1303117 9 Clostridium_botulinum_C_phage(33.33%) transposase NA
DBSCAN-SWA_78 1325059 : 1326193 1 Oenococcus_phage(100.0%) NA NA
DBSCAN-SWA_79 1336358 : 1337939 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_80 1344117 : 1345794 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_81 1349109 : 1355466 5 Bacillus_thuringiensis_phage(50.0%) NA NA
DBSCAN-SWA_82 1362335 : 1365917 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_83 1372804 : 1374644 3 Diadromus_pulchellus_ascovirus(50.0%) NA NA
DBSCAN-SWA_84 1389990 : 1391025 1 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_85 1395427 : 1400229 3 Hokovirus(50.0%) NA NA
DBSCAN-SWA_86 1414939 : 1420200 9 Bordetella_phage(50.0%) NA NA
DBSCAN-SWA_87 1424745 : 1426679 2 Micromonas_sp._RCC1109_virus(100.0%) NA NA
DBSCAN-SWA_88 1445818 : 1446520 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_89 1457229 : 1492531 35 Streptococcus_phage(30.0%) portal,transposase,tRNA,integrase,protease attL 1469188:1469202|attR 1501971:1501985
DBSCAN-SWA_90 1501009 : 1502129 1 Leptospira_phage(100.0%) transposase NA
DBSCAN-SWA_91 1506499 : 1509948 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_92 1520937 : 1522038 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_93 1535777 : 1537469 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_94 1574993 : 1575842 1 Phaeocystis_globosa_virus(100.0%) NA NA
DBSCAN-SWA_95 1580477 : 1587286 6 Mollivirus(25.0%) NA NA
DBSCAN-SWA_96 1595924 : 1598495 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_97 1611121 : 1613032 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_98 1623694 : 1625620 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_99 1636741 : 1637740 1 Wolbachia_phage(100.0%) NA NA
DBSCAN-SWA_100 1652981 : 1687554 7 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_101 1727366 : 1729172 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_102 1759393 : 1760176 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_103 1765423 : 1767031 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_104 1772918 : 1774508 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_105 1779544 : 1780864 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_106 1815133 : 1815697 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_107 1827176 : 1827809 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_108 1841969 : 1848166 2 Ralstonia_phage(50.0%) NA NA
DBSCAN-SWA_109 1859541 : 1863629 3 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_110 1872036 : 1872891 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_111 1876605 : 1880205 3 Oenococcus_phage(50.0%) NA NA
DBSCAN-SWA_112 1920156 : 1921764 1 Pike_perch_iridovirus(100.0%) NA NA
DBSCAN-SWA_113 1934791 : 1936588 1 uncultured_phage(100.0%) NA NA
DBSCAN-SWA_114 1952675 : 1953845 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_115 1957293 : 1959779 3 Ostreococcus_tauri_virus(50.0%) NA NA
DBSCAN-SWA_116 1963998 : 1966917 3 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_117 1988626 : 1990393 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_118 1999298 : 2000848 2 Enterobacteria_phage(50.0%) transposase NA
DBSCAN-SWA_119 2008053 : 2009394 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_120 2027282 : 2033728 9 Lake_Baikal_phage(33.33%) NA NA
DBSCAN-SWA_121 2041838 : 2043536 1 Catovirus(100.0%) holin NA
DBSCAN-SWA_122 2056195 : 2063575 7 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_123 2077946 : 2079407 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_124 2090788 : 2093692 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_125 2099210 : 2105642 4 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_126 2116483 : 2120863 3 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_127 2136598 : 2138722 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_128 2150278 : 2150869 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_129 2159802 : 2177417 4 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_130 2203830 : 2204463 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_131 2219530 : 2220532 1 Stx2-converting_phage(100.0%) NA NA
DBSCAN-SWA_132 2223654 : 2224848 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_133 2231916 : 2232741 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_134 2246627 : 2248181 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_135 2254538 : 2261335 4 Leptospira_phage(33.33%) transposase NA
DBSCAN-SWA_136 2264975 : 2265659 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_137 2269061 : 2270357 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_138 2275186 : 2294565 4 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_139 2304263 : 2305781 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_140 2311114 : 2317977 2 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_141 2322569 : 2330075 2 Paenibacillus_phage(50.0%) NA NA
DBSCAN-SWA_142 2349946 : 2351476 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_143 2383369 : 2393802 8 Indivirus(25.0%) NA NA
DBSCAN-SWA_144 2398983 : 2400984 1 Bathycoccus_sp._RCC1105_virus(100.0%) protease NA
DBSCAN-SWA_145 2407757 : 2408321 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_146 2415736 : 2425460 6 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_147 2441852 : 2500070 74 Burkholderia_phage(86.0%) tail,transposase,plate,integrase,terminase attL 2460033:2460050|attR 2484073:2484090
DBSCAN-SWA_148 2513080 : 2514523 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_149 2521024 : 2567527 3 Paenibacillus_phage(100.0%) NA NA
DBSCAN-SWA_150 2584759 : 2586310 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_151 2595006 : 2595774 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_152 2607913 : 2610700 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_153 2633708 : 2635694 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_154 2643491 : 2650056 8 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_155 2665369 : 2666926 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_156 2670236 : 2670803 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_157 2678918 : 2683306 4 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_158 2704791 : 2705589 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_159 2713305 : 2721017 10 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_160 2734060 : 2735410 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_161 2773628 : 2775092 1 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_162 2792077 : 2794282 1 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_163 2818539 : 2820606 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_164 2837442 : 2838219 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_165 2843971 : 2845528 1 Cedratvirus(100.0%) NA NA
DBSCAN-SWA_166 2875100 : 2875898 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_167 2889623 : 2891270 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_168 2912145 : 2920452 4 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_169 2923606 : 2925115 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_170 2955115 : 2956183 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_171 2968727 : 2970779 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_172 2981850 : 2983821 1 Phaeocystis_globosa_virus(100.0%) NA NA
DBSCAN-SWA_173 2994191 : 2994410 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_174 3022761 : 3024141 1 Ectocarpus_siliculosus_virus(100.0%) NA NA
DBSCAN-SWA_175 3027717 : 3028194 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_176 3035047 : 3040471 3 Hokovirus(50.0%) NA NA
DBSCAN-SWA_177 3046064 : 3048026 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_178 3051827 : 3056137 3 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_179 3075248 : 3077420 2 Serratia_phage(50.0%) NA NA
DBSCAN-SWA_180 3087594 : 3091103 2 Indivirus(50.0%) NA NA
DBSCAN-SWA_181 3099594 : 3104106 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_182 3112286 : 3113761 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_183 3150983 : 3155093 4 Aeromonas_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP038220
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 458134 : 464910 11 Burkholderia_virus(33.33%) integrase attL 450045:450060|attR 461703:461718
DBSCAN-SWA_2 2045569 : 2056798 11 Burkholderia_virus(22.22%) integrase attL 2042974:2042990|attR 2059579:2059595
DBSCAN-SWA_3 2278178 : 2293283 17 Burkholderia_phage(42.86%) transposase,plate,integrase,protease,tail attL 2274786:2274802|attR 2283831:2283847
DBSCAN-SWA_4 2622216 : 2631472 7 Hokovirus(16.67%) NA NA
DBSCAN-SWA_5 2968664 : 2977546 9 Bacillus_phage(16.67%) NA NA
DBSCAN-SWA_6 3265986 : 3338969 94 uncultured_Caudovirales_phage(26.32%) portal,plate,integrase,protease,tRNA,capsid,tail,terminase,head attL 3262648:3262665|attR 3338367:3338384
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage