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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041727 Staphylococcus lugdunensis strain SL122 chromosome, complete genome 11 crisprs DEDDh,cas3,DinG,csa3,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL 5 3 8 1

Results visualization

1. NZ_CP041727
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041727_1 441409-441499 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041727_2 1005658-1005744 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041727_3 1098457-1098551 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041727_4 1643059-1643141 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041727_5 1804744-1805212 TypeIII NA
6 spacers
cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041727_6 2144026-2144109 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041727_7 2326598-2326679 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041727_8 2358906-2358986 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041727_9 2447120-2447268 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041727_10 2499842-2499928 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041727_11 2535798-2535877 Orphan NA
1 spacers
WYL

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP041727_10 10.1|2499872|27|NZ_CP041727|CRISPRCasFinder 2499872-2499898 27 NZ_CP041727.1 1919794-1919820 0 1.0
NZ_CP041727_4 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder 1643085-1643115 31 NZ_CP041727.1 1427634-1427664 1 0.968
NZ_CP041727_9 9.1|2447177|17|NZ_CP041727|PILER-CR 2447177-2447193 17 NZ_CP041727.1 147775-147791 1 0.941
NZ_CP041727_9 9.1|2447177|17|NZ_CP041727|PILER-CR 2447177-2447193 17 NZ_CP041727.1 1371002-1371018 1 0.941
NZ_CP041727_10 10.1|2499872|27|NZ_CP041727|CRISPRCasFinder 2499872-2499898 27 NZ_CP041727.1 2542693-2542719 1 0.963
NZ_CP041727_10 10.1|2499872|27|NZ_CP041727|CRISPRCasFinder 2499872-2499898 27 NZ_CP041727.1 2542750-2542776 1 0.963
NZ_CP041727_11 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder 2535821-2535854 34 NZ_CP041727.1 1317094-1317127 1 0.971
NZ_CP041727_4 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder 1643085-1643115 31 NZ_CP041727.1 717660-717690 2 0.935
NZ_CP041727_4 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder 1643085-1643115 31 NZ_CP041727.1 1978276-1978306 2 0.935
NZ_CP041727_4 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder 1643085-1643115 31 NZ_CP041727.1 1609490-1609520 2 0.935
NZ_CP041727_4 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder 1643085-1643115 31 NZ_CP041727.1 2215899-2215929 2 0.935
NZ_CP041727_6 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder 2144052-2144083 32 NZ_CP041727.1 717660-717691 2 0.938
NZ_CP041727_6 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder 2144052-2144083 32 NZ_CP041727.1 1609489-1609520 2 0.938
NZ_CP041727_6 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder 2144052-2144083 32 NZ_CP041727.1 1994669-1994700 2 0.938
NZ_CP041727_6 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder 2144052-2144083 32 NZ_CP041727.1 1994726-1994757 2 0.938
NZ_CP041727_6 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder 2144052-2144083 32 NZ_CP041727.1 2215898-2215929 2 0.938
NZ_CP041727_11 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder 2535821-2535854 34 NZ_CP041727.1 236214-236247 2 0.941
NZ_CP041727_11 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder 2535821-2535854 34 NZ_CP041727.1 397471-397504 2 0.941
NZ_CP041727_11 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder 2535821-2535854 34 NZ_CP041727.1 986495-986528 2 0.941
NZ_CP041727_11 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder 2535821-2535854 34 NZ_CP041727.1 1340372-1340405 2 0.941
NZ_CP041727_11 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder 2535821-2535854 34 NZ_CP041727.1 1784332-1784365 2 0.941

1. spacer 10.1|2499872|27|NZ_CP041727|CRISPRCasFinder matches to position: 1919794-1919820, mismatch: 0, identity: 1.0

aatgcaacaagcatttccacgaacaac	CRISPR spacer
aatgcaacaagcatttccacgaacaac	Protospacer
***************************

2. spacer 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder matches to position: 1427634-1427664, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctgtgttggggccc	Protospacer
****** ************************

3. spacer 9.1|2447177|17|NZ_CP041727|PILER-CR matches to position: 147775-147791, mismatch: 1, identity: 0.941

ttggtgaatttcttatc	CRISPR spacer
ttggtgaatttcttttc	Protospacer
************** **

4. spacer 9.1|2447177|17|NZ_CP041727|PILER-CR matches to position: 1371002-1371018, mismatch: 1, identity: 0.941

ttggtgaatttcttatc	CRISPR spacer
ttggtgaatttcttgtc	Protospacer
**************.**

5. spacer 10.1|2499872|27|NZ_CP041727|CRISPRCasFinder matches to position: 2542693-2542719, mismatch: 1, identity: 0.963

aatgcaacaagcatttccacgaacaac	CRISPR spacer
aatgcaacaagcatttccacggacaac	Protospacer
*********************.*****

6. spacer 10.1|2499872|27|NZ_CP041727|CRISPRCasFinder matches to position: 2542750-2542776, mismatch: 1, identity: 0.963

aatgcaacaagcatttccacgaacaac	CRISPR spacer
aatgcaacaagcatttccacggacaac	Protospacer
*********************.*****

7. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 1317094-1317127, mismatch: 1, identity: 0.971

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggccccaacagagagaaatacgaaaagtatttcg	Protospacer
***************************.******

8. spacer 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder matches to position: 717660-717690, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttctcgaaattctctctgttggggccc	Protospacer
******.************ ***********

9. spacer 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder matches to position: 1978276-1978306, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctttgttggggccc	Protospacer
********.********** ***********

10. spacer 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder matches to position: 1609490-1609520, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttctcgaaattctctctgttggggccc	Protospacer
******.************ ***********

11. spacer 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder matches to position: 2215899-2215929, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctttgttggggccc	Protospacer
****** ************ ***********

12. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to position: 717660-717691, mismatch: 2, identity: 0.938

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
tttcttctcgaaattctctctgttggggcccc	Protospacer
***** *************.************

13. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to position: 1609489-1609520, mismatch: 2, identity: 0.938

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
tttcttctcgaaattctctctgttggggcccc	Protospacer
***** *************.************

14. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to position: 1994669-1994700, mismatch: 2, identity: 0.938

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
tttcttctcgaaattctctttgctggggcccc	Protospacer
***** ****************.*********

15. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to position: 1994726-1994757, mismatch: 2, identity: 0.938

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
tttcttctcgaaattctctttgctggggcccc	Protospacer
***** ****************.*********

16. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to position: 2215898-2215929, mismatch: 2, identity: 0.938

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
tttcttgtcgaaattctctttgttggggcccc	Protospacer
*****  *************************

17. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 236214-236247, mismatch: 2, identity: 0.941

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggccccaacaaagagaaattcgaaaagcatttcg	Protospacer
**********.******** **************

18. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 397471-397504, mismatch: 2, identity: 0.941

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggccccaacaaagagaaatgcgaaaagcatttcg	Protospacer
**********.********.**************

19. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 986495-986528, mismatch: 2, identity: 0.941

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggcctcaacagagagaaatacgaaaagtatttcg	Protospacer
****.**********************.******

20. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 1340372-1340405, mismatch: 2, identity: 0.941

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggccccaacaaagagaaatgcgaaaagcatttcg	Protospacer
**********.********.**************

21. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 1784332-1784365, mismatch: 2, identity: 0.941

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggccccaacaaagagaaatgcgaaaagcatttcg	Protospacer
**********.********.**************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041727_7 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder 2326624-2326653 30 NZ_CP049244 Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence 187193-187222 8 0.733
NZ_CP041727_7 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder 2326624-2326653 30 NZ_CP022118 Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence 59911-59940 8 0.733
NZ_CP041727_7 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder 2326624-2326653 30 NZ_CP017563 Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence 962765-962794 8 0.733
NZ_CP041727_6 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder 2144052-2144083 32 NZ_CP049244 Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence 399493-399524 9 0.719
NZ_CP041727_7 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder 2326624-2326653 30 NZ_CP020539 Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence 485451-485480 9 0.7
NZ_CP041727_5 5.3|1804926|35|NZ_CP041727|PILER-CR,CRISPRCasFinder,CRT 1804926-1804960 35 NC_025146 Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111 64963-64997 10 0.714

1. spacer 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

aagaaatgcgacaagcatttccgcgaacaa	CRISPR spacer
tggaaatgcggcaagcatttctgcgacatc	Protospacer
 .********.**********.****    

2. spacer 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder matches to NZ_CP022118 (Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

aagaaatgcgacaagcatttccgcgaacaa	CRISPR spacer
aaaaaaggcgacaagcatttccggactctt	Protospacer
**.*** **************** .  *  

3. spacer 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 8, identity: 0.733

aagaaatgcgacaagcatttccgcgaacaa	CRISPR spacer
gaacgcggcgacgagcctttccgcgaacaa	Protospacer
.*. .  *****.*** *************

4. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
ccgctgctcgcaattctttttgttggttctgc	Protospacer
.. ******* ******.********  *. *

5. spacer 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 9, identity: 0.7

aagaaatgcgacaagcatttccgcgaacaa	CRISPR spacer
ttcggctgcgtcaagcatgtccgcgaacag	Protospacer
   .. **** ******* **********.

6. spacer 5.3|1804926|35|NZ_CP041727|PILER-CR,CRISPRCasFinder,CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 10, identity: 0.714

ttcatcatatccttttatatagtttttgttttgtt	CRISPR spacer
cattccatatttttttatatagtttttgtttgcta	Protospacer
. . .*****..*******************  * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 18520 : 62033 52 Staphylococcus_phage(68.75%) holin,head,terminase,tail,capsid NA
DBSCAN-SWA_2 335689 : 365942 32 Staphylococcus_phage(96.15%) tRNA NA
DBSCAN-SWA_3 482725 : 491744 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_4 617441 : 626138 9 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_5 1030574 : 1039044 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1324496 : 1342406 15 uncultured_Caudovirales_phage(58.33%) NA NA
DBSCAN-SWA_7 1356928 : 1363549 8 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_8 2636638 : 2645064 13 Staphylococcus_phage(58.33%) NA NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP041727.1|WP_002459743.1|1334465_1334864_-|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI 1334465_1334864_- 132 aa aa NA NA NA 1324496-1342406 yes