CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	11 crisprs	DEDDh,cas3,DinG,csa3,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	5	3	8	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041727_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041727_1

441409-441499

Orphan

Consensus_repeat	Method
AAACTCGTCATGCTCGTTAAGTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041727_1

>merge|NZ_CP041727|1|441409-441499|CRISPRCasFinder
AAACTCGTCATGCTCGTTAAGTGCAATAAAGGAATACCTGAGCTGAAGCTCATGCATAAGAAGCACTAAACTCGCCATGCTCGTTAAGTGC

>NZ_CP041727|1|1|441409-441499|CRISPRCasFinder
AAACTCGTCATGCTCGTTAAGTGC	AATAAAGGAATACCTGAGCTGAAGCTCATGCATAAGAAGCACT
AAACTCGCCATGCTCGTTAAGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041727.1\|WP_002478047.1\|427640_428870_+\|NAD-dependent-malic-enzyme-4	unknown	unknown	gnl\|CDD\|235976
NZ_CP041727.1\|WP_002458891.1\|451463_453401_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_CP041727.1\|WP_002458885.1\|445836_446838_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|236079
NZ_CP041727.1\|WP_002478051.1\|437090_438359_+\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_CP041727.1\|WP_002478053.1\|441546_444180_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP041727.1\|WP_002458892.1\|453864_455358_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223903
NZ_CP041727.1\|WP_002478055.1\|445084_445690_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP041727.1\|WP_002458881.1\|439272_440982_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274368
NZ_CP041727.1\|WP_002458878.1\|435924_437043_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|184468
NZ_CP041727.1\|WP_002478058.1\|450183_451104_+\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
NZ_CP041727.1\|WP_002478057.1\|448807_450184_+\|helicase-DnaB	unknown	unknown	gnl\|CDD\|226138
NZ_CP041727.1\|WP_002458875.1\|430924_431893_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_CP041727.1\|WP_002458887.1\|448336_448807_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
NZ_CP041727.1\|WP_002478054.1\|444196_445069_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|223344
NZ_CP041727.1\|WP_002458877.1\|434224_435583_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|236830
NZ_CP041727.1\|WP_002478052.1\|438562_439273_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP041727.1\|WP_002458873.1\|428958_429816_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP041727.1\|WP_002478049.1\|431910_433671_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
NZ_CP041727.1\|WP_002478056.1\|447012_448020_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|235755
NZ_CP041727.1\|WP_002478048.1\|429817_430762_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580

Protein	Function_ID	Function_description	E-value
NZ_CP041727.1\|WP_002478047.1\|427640_428870_+\|NAD-dependent-malic-enzyme-4	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_CP041727.1\|WP_002458891.1\|451463_453401_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP041727.1\|WP_002458885.1\|445836_446838_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|236079	PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated.	0
NZ_CP041727.1\|WP_002478051.1\|437090_438359_+\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_CP041727.1\|WP_002478053.1\|441546_444180_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP041727.1\|WP_002458892.1\|453864_455358_+\|amino-acid-permease	gnl\|CDD\|223903	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism].	0
NZ_CP041727.1\|WP_002478055.1\|445084_445690_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	4.59524e-92
NZ_CP041727.1\|WP_002458881.1\|439272_440982_+\|PAS-domain-S-box-protein	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	8.93727e-90
NZ_CP041727.1\|WP_002458878.1\|435924_437043_+\|citrate-synthase	gnl\|CDD\|184468	PRK14035, PRK14035, citrate synthase; Provisional.	0
NZ_CP041727.1\|WP_002478058.1\|450183_451104_+\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	1.56081e-165
NZ_CP041727.1\|WP_002478057.1\|448807_450184_+\|helicase-DnaB	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	1.01886e-90
NZ_CP041727.1\|WP_002458875.1\|430924_431893_+\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_CP041727.1\|WP_002458887.1\|448336_448807_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	2.06202e-81
NZ_CP041727.1\|WP_002478054.1\|444196_445069_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	7.24117e-93
NZ_CP041727.1\|WP_002458877.1\|434224_435583_-\|amino-acid-permease	gnl\|CDD\|236830	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional.	0
NZ_CP041727.1\|WP_002478052.1\|438562_439273_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.00474e-94
NZ_CP041727.1\|WP_002458873.1\|428958_429816_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_CP041727.1\|WP_002478049.1\|431910_433671_+\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
NZ_CP041727.1\|WP_002478056.1\|447012_448020_+\|biotin-synthase-BioB	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	4.29088e-179
NZ_CP041727.1\|WP_002478048.1\|429817_430762_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0

>NZ_CP041727.1|WP_002458881.1|439272_440982_+|PAS-domain-S-box-protein
MLKFHQRLLLLLCTITIISFIGLGAIMHHSIYQTLTDKKVADLTKKTENYSKLEEQGKTEEIKNIAKNENISVKITEGNKIIFETKSHYDINPAIDNAANPSNIIYDRADEGYHYTFKNKFSNEAIYISGIDDEMVNLQKELWKYIALIGVVVLIAIYLAVRSIKRTYIRPINEVTYATSLLADGYYHVRVPESNVKETKALFVTTNELARRLQKLNNKQKIQSNRLKTTLENIPSSVLMIDKYGEIVVANHSYYEVFGLEEKVENKDYNDFIDDKIKQLILEAFKTEKSMYNQVEVNINNVHHKYFDVSCVPILSKSKKHLQGMVVVLHDITNLKKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKDDVASLDMFLNIILKESNRIESLVMDLLDLSHIEQQRELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDIIFKANKNKIAQVITNLLSNAINYSLENNRVIVRVYRQQSKVYLEIQDFGIGISKEEQKHIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVTFTDNYSNNEV
>NZ_CP041727.1|WP_002478052.1|438562_439273_+|response-regulator-transcription-factor
MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKKDGIEVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQFVNEAANDAANEEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREHMLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLERPKA
>NZ_CP041727.1|WP_002478051.1|437090_438359_+|NADP-dependent-isocitrate-dehydrogenase
MSAEKIVKTQDGLQVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKQIVWKEVLAGQKAYDETGEWLPSETLKTIEEYLIAVKGPLTTPIGGGIRSLNVALRQQLDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTEEVKKVIDFLQNEMGASNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNGRKSVTLVHKGNIMKFTEGSFKQWGYDLAHNEFADKVFTWQQYDEIVENDGKEAANKAQERAEQQGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSELLSSVLMLEHLGWQEAADKITDAIESTIASKIVTYDFARLMDGATEVSTSEFADELIKNLK
>NZ_CP041727.1|WP_002458878.1|435924_437043_+|citrate-synthase
MAELKKGLEGVIAAETKISSIIGSQLTYAGYDIDDLAENAEFEEIVFLLKNYRLPTEEELADLKKKLNYYMTLNPRVYKHFEEYVTDNVHPMTALRTSVSYIAHFDPNAEGESEEKILERSIRIQAKVASLVTAFARVRDGKEPLKPKAELNYAGNFLYMLRGELPTDIEVEAFNKALVLHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANERVMNMLSEVKSVDQVDDYLDEKFANKEKIMGFGHRVYKEGDPRAKYLREMSRKITSETGRSELYDISIAIEKRMKEEKGLIPNVDFFSATVYHSMDIPHDLFTPIFAVSRTAGWTAHILEQYRDNRIMRPRAKYIGEKDRKYIPIEER
>NZ_CP041727.1|WP_002458877.1|434224_435583_-|amino-acid-permease
MEDKLQRELSNRHVQLIAIGGAIGTGLFLGAGQTIAMTGPSILLTYILIGFMLFMFMRGLGEIIIQNTEFKSFADVTNKYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPQIPNWVSALFCVLILMTFNLLSARLFGELEFWFAIIKIATIVGLIVVGLVMILMAYKTQFGSASFANLYQNGIFPKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPQKTIPKAINSVPLRILVFYVGALAVIMSIIPWDKVSPDDSPFVRLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLADQQQAPPIFRSTNKQGVPHIAIIGSSVFLLVAALLNYIFPDATLVFTYVTTISTVLFLVVWGLILWAYINYSRRNPELHKQSTYKLPGGKYMGYIILLFFVFVFALLFVNVETRRAIYFTPVWFIILGLMYYRYKQMAKKTK
>NZ_CP041727.1|WP_002478049.1|431910_433671_+|pyruvate-kinase
MRKTKIVCTIGPASESEEMLEKLMKAGMNVARLNFSHGSHEEHKARIDTIRKVAKKLGKTIGILLDTKGPEIRTHDMKDGLIMLEKGKEVIVSMTQVEGTPEKFSVTYENLINDVQVGSYILLDDGLVELEVKEIDKANGEVRCEILNTGELKNKKGVNLPGVRVNLPGITDKDADDILFGIKEDVDYIAASFVRRPSDVLDIREILERENNHNITIFPKIENQEGIDNIEEILEVSDGLMVARGDMGVEIPPESVPIVQKDLIRKCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSFVNAIGVSVAHTALNLNVKAIVAATESGSTAVTISKYRPHSDIIAVTPSAHTARQLALVWGAYPVIKKGRKTTDDLLNNSVATAVETGRVTNGDLIIITAGVPTGEKGTTNMMKLHLVGDEIAKGQGVGRESVVGQSVVADDASDLEGKDLSNSIIITTSVDETLVPYIEKAAGLITEENGITSPSAIVGLEKGIPTIVGVEHATKEIKDGILITVDAAQGKIFEGYANVL
>NZ_CP041727.1|WP_002458875.1|430924_431893_+|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNNIEVYGIYQGYQGLLDDNIHKLELGSVGDTIQRGGTFLYSARCPQFKEAEHRKVGIDNLRKRGIEGLVVVGGDGSYRGAQRISEECPEIQTIGVPGTIDNDINGTDFTIGFDTALNTIIECVDKIRDTASSHARTFIVEVMGRDCGDLALWAGLSVGAETIMVPEVKTEIKDVAEKIESGIKRGKKHSIVMVAEGCMSGQECADELMKYINVDTRVSVLGHIQRGGSPSGTDRVLASRLGGHAVDLLIQGKSGLGVGITHNQLTATPFDEIFKISDHKFNNDIYELAKKLSI
>NZ_CP041727.1|WP_002478048.1|429817_430762_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MLDFEKPLYDIKNKIESLKESQQKNDVDLQDEIDLLEASLKRETKKIYTNLKPWDRVQIARLQERPTLLDYIPHIFDAFIEFHGDRNFRDDPAMVGGIAYLNEMPVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIAKNLIEMASLTVPVIAIVIGEGGSGGALGIGVANRILMLENSTYSVISPEGAAALLWKDSSLAKMAAETMKITANDLLQLKIIDNVIEEPLGGAHRDIEIQAQHIKAAFENELAELSKLNKKQLAEDRYNKFRHIGSFVD
>NZ_CP041727.1|WP_002458873.1|428958_429816_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MFKDFFNRSSKKKKYLTVQDSKQNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAVSDEGSFQEFDKGMTSANPLDFPGYEEKIEKDQQKTDLQEAVVTGIATLENLPFGIAVMDSRFRMGSMGSVVGEKICRIIDYCTEHRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPEDFQTAEFLLEHGQLDKVVHRKDMKETLAQILKMHQEVN
>NZ_CP041727.1|WP_002478047.1|427640_428870_+|NAD-dependent-malic-enzyme-4
MSLRDDALQMHKENQGKLQVTPNVKVTNKKELSLAYSPGVAEPCKEIHEDPRTVYDYTIKRNTVAVVTDGTAVLGLGNIGAAASIPVMEGKAVLFKSFAGINGVPIALDTTDTEEIIQTVKLISPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTLAGLINALRIVDKPLSDIKIVLNGAGAAGIAICKLLDAYGVRHMIMCDSKGAIYENRPYGMNETKSFVAKFTNKDKIEGSLQDVIKEADVFIGVSIADLLTKEMVQSMSKDAIIFAMANPNPEIKPEDAKEAGAKVIGTGRSDFPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIANLIQPDELRPDYCIPDPFDKRVAPSVAREVARAAMETGVARIEVEPQAIYDKTMKLTDIQ
>NZ_CP041727.1|WP_002478053.1|441546_444180_+|DNA-polymerase-I
MDKLVLIDGNSLSFRAFYALPLLSNKAGIHTNAIYGFAMLLEKILKEEQPNHFLVAFDAGKTTFRHEKYSEYKGGRQSTPPELSEQFPYIRQLLDAYHIKYYELENYEADDIIGTLSKQAEASGLETIIITGDRDLTQLATDHVTIYYTKKGVTDVDHYTPEFIAEKYNGLLPKQIIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFHSVEGVYNHLDEVSGKKLKENLENSKADAFMSKDLATINCDSPIKVNLKDTIMGDLNDNKDKIELFQKLEFKQLLNDIDSSASENNSETEHNFEVIHHFDNINFKKLDNAIIHFEIDGSNYLKDKILKFGLYAQNQYIVISAEDIHQYTELIEWLENDHNNKIVFDAKKTYVAAHRLEINLQHIDFDVMLASYIIDPSRTIEDVQSVVSYYNQNFVKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDILSDHNQMDLLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAGESFNINSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAMKVFGVEKDQVNDLMRRQAKAVNFGIVYGISDYGLSQNLGITRKKAKAFIDDYLASFPGVKQYMTDIVKDAKANGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFDKNVRETNYHAKLLLQVHDELIFEVPKSEVQDFSEFVEEIMDNALTLAVPLLVDSSYGATWYDAK
>NZ_CP041727.1|WP_002478054.1|444196_445069_+|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVEHVKRGIEPFIINTIIKSVTFSSKVIDGKSDGKETIIKGINLDGFRQFTEGYKIYKVERRSKYINIYIEKNQECRVLISHLGMAGGFFIVNHLDEIHAPNYRKHWHVIFHLSNGKLLVYSDIRRFGEIRNVQALNNYASFKNMAPEPFDESALDHYLTYLNQPKVKHKPIKQLILDHKVIAGCGNIYACEALYRAAIHPATEVQSLNQQARQNLFLEVQAVLNEGIEYGGTSISDYRHADGKTGTMQLRLNVYKQQQCKKCGHKIEQQVIATRNSHFCPVCQK
>NZ_CP041727.1|WP_002478055.1|445084_445690_+|dephospho-CoA-kinase
MPKVIGLTGGIATGKSTVSELLTAYGFKVVDADIAAREAVKKGSAGLEQIRQTFGNEAINDDGEMNRQYMGQLVFNHPDKRTELNEIVHPIVHQLMDKEKSHYLNQGYNVVMDIPLLFENELEDTVDEVWLVYTSESIQIDRLMERNNLSLEEAKARVYSQISIDKKSRMADIVIDNLGDKLELKQNVERILTDQGYINQE
>NZ_CP041727.1|WP_002458885.1|445836_446838_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MSTNIAINGMGRIGRMVLRIALKNEALNVVAINASYPPETIAHLINYDTTHGRYDKRVEPIESGIRVEGHDIKLVSDRNPENLPWKDLEIDIVIEATGKFNHGDKAKAHIQAGAKKVLLTGPSKGGKVQMVVKGVNDQDLDTDTYDIFSNASCTTNCIGPVAKVLNDSFGIENGLMTTVHAITNDQNNIDNPHKDLRRARSCGESIIPTSTGAAKALKEVMPELNGKLHGIALRVPTQNVSLVDLVVDLKQKVTVDEVNHAFRDANLQGIIDVEEAPLVSKDYNTNPHSAVIDAKNTMVMGDNKVKVIAWYDNEWGYSNRVVEVANQLGELIK
>NZ_CP041727.1|WP_002478056.1|447012_448020_+|biotin-synthase-BioB
MNLANQIINGKYLTQAECLKIYRDASLATLDLVHEAYLIRRHYFGHKVKLNMILNAKSGICSEDCGYCGQSREMKHKQRYTLVSNETICKGADVASNNKIGTYCIVMSGRGPSDKEVEHITKTVKDIKKDHPQLKICACLGLANEEQAEKLKAAGVDRYNHNINTSESYHGQVVSTHTYNERIQTLSYMKEHHISPCSGVICGMGESDEDIIDMAFALKKIDADSIPVNFLHPIQGTKFGSMDDLTPMKCLRILSIFRLINPTKEIRVAGGREVNLQSLQPLALQIANSIFVGDYLITGGQPNELDYQMLEDLGFEIDYGNDDEITFSHPQFKSK
>NZ_CP041727.1|WP_002458887.1|448336_448807_+|transcriptional-repressor-NrdR
MKCPKCSSTHSKVVDSRHADEANAIRRRRECEKCGTRFTTFEHIEVSPLIVVKKDGTREQFLREKILNGLVRSCEKRPVRYQQLEDITNKVEWQLRDEGHTEISSRDIGEHVMNLLMHVDQVSYVRFASVYKEFKDVDQLLASMQGILNDNKRSDS
>NZ_CP041727.1|WP_002478057.1|448807_450184_+|helicase-DnaB
MTMQAYQFDLRPRDSFEVIRHFELSQAHLEILNRLYAPLIGTHAIGLYHYLNQFVSENNQELLTHYTIMNELKVNLLDFRKTMDYLEGIGLLKSFVRHQSDNSNFIYELIQPPTAYQFFNDPMLSVFLFSEVDKKRFVQLKQYFEQDRKDLTNYQNITHKFTEVFKMPNKDIKIDSQNIKSSQYYKGLDLSNEHFDFELLKELLQHHFISSEIVTDEAKALILQLATLYGLTVEAMKRMILNSITSAQTLSFEELRKQARSYYLIEHEQQLPKLAINADKYYDSESQHTRDNSTNTKQDEWLSSLDNISPVDMLSSWSGSEPTHQQKLMIEELVSREKLPLGVINILLQFVMLKNEMMLPKKYIFEVASNWKKLGISNAKEAYERALKMNEPKQVERKPQNAKNRYYGKQIVSREKTPKWLENRDTAKRQEKIKKKDDNLEKDRQQFLEQLKKDWGDD
>NZ_CP041727.1|WP_002478058.1|450183_451104_+|primosomal-protein-DnaI
MKSFKNIMGSDSNLEQRISQIKQQVINDSDVKQFLTMHQSELTNAMIDRDLNVLQEFKDQQKHYDGHDYHSCPNFVKGHIPELYVEDERIKIKYLPCPCKIKYDEARFDSQLVTSHHMQRDTLNAKLNDIFTEDRDRLEIAIKANHICKSIINGKSVKGLYIYGPFGTGKSFILGAMANQLKSQKVASTIVYLPEYIRSLKNGFKDGSYEQRLARIREAGILMLDDIGAEEVTPWVRDEIIGPLLHYRMVQELPTFFSSNLSFEELEHHLSITREGAEKTKAARIIERIKSLADDVYLEGKNYRNN
>NZ_CP041727.1|WP_002458891.1|451463_453401_+|threonine--tRNA-ligase
MTKINIQFPDGNKKAFDKGITTEEIAQSISPGLRKKAVAGKFNQQLIDLARPLEEDGEIEIVTPGSEEALEVLRHSTAHLMANALKRLYGNVQFGVGPVIEGGFYYDFDMENKISSDDFEKIEKMMKQIVNENHKIERKVVSREEAKEFFKDDPYKLELIDAIPQDEMVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKDLKAHLQLLEERRERDHRKIGKDLELFTNNQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYRTSGHWAHYRDDMFPPMKLDENEEMVLRPMNCPHHMMIYKNKPHSYRELPIRLAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKDEFKRVVHMIQDVYKDFGFEDYTFRLSYRDPEDKEKYMDDDDMWNKAESMLKEAVDELGLPYVEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFELTYIGSDGEYHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNVDLHYDYARNLQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQQTLERDEFIWNLVDEIRLKKHR
>NZ_CP041727.1|WP_002458892.1|453864_455358_+|amino-acid-permease
MSKIESQNGGIIRGLKDRHISMIAMGGCIGTGLFMTSGGAIHDAGALGALIAYAIIGIMVFFLMTSLGEMATYLPVSGSFSTYATRFVDPSLGFALGWNYWFNWVITVAADVTIAAQVIQYWTPMAGIPAWLWSCIFLVIIFSLNSLSVRIYGESEYWFALIKVVTVIIFIAIGLLTIIGIMGGKFVGFETFTKGEGPILGGNFGGSLLSILGVFLVAGFSFQGTELIGITAGESENPERAVPKAIKQVFWRILLFYILAIFVIGMLIPYDSNALMGGDNSIATSPFTLVFKNAGLAFAASFMNAVILTSVLSAGNSGMYASTRMLYSMSKDKLAFPIFGKTNKYGVPYLSLLLTAILVIIIFLVQKVSGNAYEYIVAASGMTGFIAWVGIAVSHYRFRRAFQRQHHNKKELKYKAKWFPFGPIFAGILCVIVIIGQDVDFIKTGEFDLNRFVITYMGIPVFLVFFIYHKLRYKTKKIPLEEVDLRQDVHMNEIKHH

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Crispr_ID: NZ_CP041727_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041727_2

1005658-1005744

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCACCCCAACTCGCGTTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041727_2

>merge|NZ_CP041727|2|1005658-1005744|CRISPRCasFinder
TGTTGGGGCCCCACCCCAACTCGCGTTGTTTGTTGGCTTTCGTTTTGAAAGCCTCTGTGTTGGGGCCCCACCCCAACTTGCGTTGTT

>NZ_CP041727|2|2|1005658-1005744|CRISPRCasFinder
TGTTGGGGCCCCACCCCAACTCGCGTTGTT	TGTTGGCTTTCGTTTTGAAAGCCTCTG
TGTTGGGGCCCCACCCCAACTTGCGTTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041727.1\|WP_002478368.1\|1013431_1015111_+\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NZ_CP041727.1\|WP_002459417.1\|1002140_1002953_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP041727.1\|WP_150861632.1\|996876_997431_+\|DUF1054-domain-containing-protein	unknown	unknown	gnl\|CDD\|377650
NZ_CP041727.1\|WP_002478361.1\|999364_999820_-\|DUF4064-domain-containing-protein	unknown	unknown	gnl\|CDD\|372544
NZ_CP041727.1\|WP_002478363.1\|1001070_1002144_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270381
NZ_CP041727.1\|WP_002459428.1\|1013213_1013432_+\|DNA-dependent-RNA-polymerase-auxiliary-subunit-epsilon-family-protein	unknown	unknown	gnl\|CDD\|184224
NZ_CP041727.1\|WP_002459431.1\|1015705_1016365_-\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP041727.1\|WP_002478367.1\|1012227_1012779_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP041727.1\|WP_014533324.1\|999951_1000998_-\|DUF4064-domain-containing-protein	unknown	unknown	gnl\|CDD\|372544
NZ_CP041727.1\|WP_002493062.1\|1002958_1003756_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP041727.1\|WP_002459424.1\|1009200_1010178_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP041727.1\|WP_002478366.1\|1007683_1008988_-\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_CP041727.1\|WP_002478365.1\|1004857_1005397_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380339
NZ_CP041727.1\|WP_014533325.1\|1003748_1004843_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP041727.1\|WP_002459411.1\|995878_996694_-\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238815
NZ_CP041727.1\|WP_002459425.1\|1010181_1011294_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NZ_CP041727.1\|WP_002459413.1\|997749_999102_+\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|234815
NZ_CP041727.1\|WP_002459421.1\|1005782_1006070_-\|UPF0223-family-protein	unknown	unknown	gnl\|CDD\|179841
NZ_CP041727.1\|WP_002459426.1\|1011460_1012090_-\|cell-wall-binding-lipoprotein	unknown	unknown	gnl\|CDD\|378419
NZ_CP041727.1\|WP_002459422.1\|1006273_1007680_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798

Protein	Function_ID	Function_description	E-value
NZ_CP041727.1\|WP_002478368.1\|1013431_1015111_+\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP041727.1\|WP_002459417.1\|1002140_1002953_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	2.50919e-72
NZ_CP041727.1\|WP_150861632.1\|996876_997431_+\|DUF1054-domain-containing-protein	gnl\|CDD\|377650	pfam06335, DUF1054, Protein of unknown function (DUF1054). This family consists of several hypothetical bacterial proteins of unknown function.	1.16178e-91
NZ_CP041727.1\|WP_002478361.1\|999364_999820_-\|DUF4064-domain-containing-protein	gnl\|CDD\|372544	pfam13273, DUF4064, Protein of unknown function (DUF4064).	5.59671e-06
NZ_CP041727.1\|WP_002478363.1\|1001070_1002144_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270381	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold. This group represents the periplasmic substrate-binding domain that serves as a primary polyamine receptor of an uncharacterized ABC-type transport system from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, as well as plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.52084e-132
NZ_CP041727.1\|WP_002459428.1\|1013213_1013432_+\|DNA-dependent-RNA-polymerase-auxiliary-subunit-epsilon-family-protein	gnl\|CDD\|184224	PRK13667, PRK13667, hypothetical protein; Provisional.	3.00943e-27
NZ_CP041727.1\|WP_002459431.1\|1015705_1016365_-\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	7.4558e-64
NZ_CP041727.1\|WP_002478367.1\|1012227_1012779_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	6.80213e-62
NZ_CP041727.1\|WP_014533324.1\|999951_1000998_-\|DUF4064-domain-containing-protein	gnl\|CDD\|372544	pfam13273, DUF4064, Protein of unknown function (DUF4064).	1.47568e-20
NZ_CP041727.1\|WP_002493062.1\|1002958_1003756_-\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	2.67852e-74
NZ_CP041727.1\|WP_002459424.1\|1009200_1010178_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
NZ_CP041727.1\|WP_002478366.1\|1007683_1008988_-\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	0
NZ_CP041727.1\|WP_002478365.1\|1004857_1005397_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	4.70334e-17
NZ_CP041727.1\|WP_014533325.1\|1003748_1004843_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.00778e-167
NZ_CP041727.1\|WP_002459411.1\|995878_996694_-\|inositol-monophosphatase-family-protein	gnl\|CDD\|238815	cd01637, IMPase_like, Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.	1.07922e-84
NZ_CP041727.1\|WP_002459425.1\|1010181_1011294_-\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	0
NZ_CP041727.1\|WP_002459413.1\|997749_999102_+\|divalent-metal-cation-transporter	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0
NZ_CP041727.1\|WP_002459421.1\|1005782_1006070_-\|UPF0223-family-protein	gnl\|CDD\|179841	PRK04387, PRK04387, hypothetical protein; Provisional.	4.91032e-39
NZ_CP041727.1\|WP_002459426.1\|1011460_1012090_-\|cell-wall-binding-lipoprotein	gnl\|CDD\|378419	pfam10368, YkyA, Putative cell-wall binding lipoprotein. YkyA is a family of proteins containing a lipoprotein signal and a hydrolase domain. It is similar to cell wall binding proteins and might also be recognisable by a host immune defense system. It is thus likely to belong to pathways important for pathogenicity.	2.17942e-30
NZ_CP041727.1\|WP_002459422.1\|1006273_1007680_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0

>NZ_CP041727.1|WP_002478365.1|1004857_1005397_-|helix-turn-helix-transcriptional-regulator
MDIGMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSDFFQEKTKEKVLYTAEDQTIYDEYDKGYILKWLVTNSNEYDMEPLMLTLKPGASYKHFQPSNSDTFIYCLEGQITLSLGNQLYRANAEDALYFRANDVHQLCNNSKQNVTILIVATASYL
>NZ_CP041727.1|WP_014533325.1|1003748_1004843_-|ABC-transporter-ATP-binding-protein
MQPLLSFKSVSKGYDDLNILDHMDLDIESGYFYTLLGPSGCGKTTILKLIAGFETPDSGEIIYQNRSIENLPANKRKVNTVFQDYALFPHLNVYDNIAFGLKLKKLSKKDIDQKVTDALKLVKLSGYEQRSINDMSGGQKQRVAIARAIVNEPEILLLDESLSALDLKLRTEMQYELRELQSRLGITFIFVTHDQEEALALSDYIFVMKDGKIQQFGTPTDIYDEPVNRFVADFIGESNIVNGTMVKDYVVNIYGQDFDCVNMGIPSGKKVEVVIRPEDISLIEAEAGLFKATVDSLLFRGVHYEICCVDRKGYEWVIQTTKKADVGSEVGLYFEPESIHIMVPGETEEEFDKRIESYEDTDDE
>NZ_CP041727.1|WP_002493062.1|1002958_1003756_-|ABC-transporter-permease
MSNIKKILLVPYILWMIIFIILPVLLLIYFSFTDINGHFSFTNYQQIFQYKYFEMFWDSILYAALITMITLFISYPTAYFIRNAKNPNFWLLILIIPTWINLLLKTYAFIGLLSHDGLINKVLGILNVPKVDMLFTSAAFLVVASYIYIPFMILPIFNSMKSIPVNLIQASSDLGANPFTTFRKVILPLTKEGVLTGVQVTFIPSLSLFMITRLIAGNKVINIGTSIEEQFLVIQNYGMGATIAIVLIVFMALILIITKSNDERR
>NZ_CP041727.1|WP_002459417.1|1002140_1002953_-|ABC-transporter-permease
MKWYGKLYISILLVILYVPIFFLMFYSFNSGGNMIHFEHFTFEHYQSLFKNDKLMAIIFNTIAVALLAASISTVIGTFGAIALFYLRQKKLKVTLLTLNNVLMVSSDVVIGASFLIMFTALGHFTGIGLGFGTVLASHIAFCIPIVVIVVLPQLYEMNHNILNAARDLGATESQILSRVLIPNLMPAIIGGFFMALTYSLDDFTVSFFVTGNGFSVLSVEVYAMARKGISMEVNAISTLLFVVIVIGIVGYYGIQRSLKRKPRLKRGMLR
>NZ_CP041727.1|WP_002478363.1|1001070_1002144_-|ABC-transporter-substrate-binding-protein
MKQFLQLVCGALVIGLLCLGISHLFSGHEKAKSGKKIYVYNWGEYIDPELIKQFENQTGIEVIYETFDSNEAMEAKIKNGGTHYDVAFPSEYTVQKLKRANLLVPLNHHKLPNMRNLDPDYLDKSYDKGNQYSIPYFFGTVGILYNKQAYPDASFNHWSDLYQERYRNDVLLVDGAREIIGLSLNKLGYSLNDTNSQHLRQAEQDLKKLGPQVRGVVGDEVTMMLQQNEGNIAVVWSGVAAPLVQGSDKYNYVVPKEGSNLWFDNMVIPRTAQNKEGAYQFINFLLDAENSKKNTEWVGYATPNKAARQLLPNEIRNDHRFYPTQQEQARLEVYKDLGQRTLGNYNESFLNFKMSLK
>NZ_CP041727.1|WP_014533324.1|999951_1000998_-|DUF4064-domain-containing-protein
MSGEQYTQIKRPVSRLTEKILGWFSWIFLLLMTIITMFIALVSFSNDTSIQNLEATLNNNDLIQQILGNNGFNTTQFVIWLQNGIWAVIVYFIICLLISFLALISMNIRILSGILFLVASVVTLPLVLLFVTLIIPIFFFIIAIMMFARKNKVEIVPAYGYPGYDDNFDYRYNEPDYQQQPPIYDDYERHQPNDDMAYHMPQETSNSSFNEDDKYDQYPKRAIMSDYQSTDDEDEAPQVLSRQAKYHKNKYQDEFSDERAAPFNEAVVQQEPVLDKKELKAQRKQEKAEIKARKREKRKAYNQRMKEKRKNQPSAVNQRRMNYEERKQIFNHENSAKDQQESHLDDSK
>NZ_CP041727.1|WP_002478361.1|999364_999820_-|DUF4064-domain-containing-protein
MKTKKELVIAWIANGLSLIFLLFNILSMLLTDEKNNVKEYEQMAKQFAGKNVTVTPELIHFIMVFFIGILAFSTILGIAATTLIKNRSLIAIFLFISAVLIGLFSMNIIAMILWLIVIVLLIVKRNQYKNDSDWHAEQYKHAEKKENPYIY
>NZ_CP041727.1|WP_002459413.1|997749_999102_+|divalent-metal-cation-transporter
MNKRDTTHQPKHLSLDEINNTIKFDSNGTSSQKFLAFLGPGLLVAVGYMDPGNWITSMQGGAQFGYTLLFIILISSLSAMLLQSMTLRLGIATSHDLAQMTKHYLSKPVAIIFWIIAELAIIATDIAEVIGSAIALNLLLGIPLIVGAIITVCDVFLLLFIMKFGFRKIEAIVGTLIFTVLAIFVFEVFISSPSTTAILEGFVPHKEIITNHGILYIALGIVGATIMPHNLYLHSSIVQSRQYDRHSIKEKAQAIKYATIDSNLQLSVAFVVNCLLLVLGASLFYGVNQDQLGGFYDLYHALRTQPILGAALGAIMSTLFAVALLASGQNSTITGTLAGQIVMEGFLNISLPNWLRRLVTRAIAVIPVIICLIIFKGNEEKIEQLLVFSQVFLSIALPFSLIPLQLSTSNKQLMGPFVNKSWVNYCSWILIIVLSVLNVYLIIETFKEFI
>NZ_CP041727.1|WP_150861632.1|996876_997431_+|DUF1054-domain-containing-protein
MTKYTFKQKDFKAFDVDGLDPRMEALEAHVRPQLRALGDYFADYFTSQTGETFYSHVAKHARRSVNPPKDTWVAFATNKRGYKMLPHFQIGLFKDHLFIMYGVMHETKDKAQRVKTFDKHFDTLTHLPEDYRICLDHMKPDKPLIKDLSVDELHEAIDRVKNVKKGEFFVARTLAPNDKRLKSD
>NZ_CP041727.1|WP_002459411.1|995878_996694_-|inositol-monophosphatase-family-protein
MALYDFAKSLILEAGNNVRLMMKEKLSIETKSNPNDLVTNVDKATETYIYEAIHSNYPEHKVIGEEGHGHNIRNIDGVVWVVDPIDGTLNFVHQRENFAISIGIYYNGEAYAGFVYDVMKDALYHAKVHEGAFENNHRLEAIGTSELKSSLIGINPNWVTKPIIGPIFQPVVNRARSSRAYGSAALEIIAVAKGQLAAYITPRLQPWDFAGGLIILNEVGGKGSNLLGETLEITHPDSVLMANQTVHEELLQQFFLPHQQTLTELHAKYYK
>NZ_CP041727.1|WP_002459421.1|1005782_1006070_-|UPF0223-family-protein
MEYQYPLDMDWTHDEMLKVIAFFNQIERYYESSVLSDQVIAHYRNFKQIVPGKAEEKQIFKEFEQNSGYNSYQVIKEATTQNKPTHIQQKNNTRT
>NZ_CP041727.1|WP_002459422.1|1006273_1007680_-|dihydrolipoyl-dehydrogenase
MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLHASHRFVEAQHSENLGVIAESVSLKFDKVQEFKQSVVNKLTGGVEGLLKGNKVEIVKGEAYFVDNNSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFEFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKDKGIEIITEAMAKNAEETENGVKVTYEAKGEEQTIEADYVLVTVGRRPNTDELGLEELGLKFADRGLLEVDKQSRTSIDNIYAIGDIVPGLPLAHKASYEAKVAAEAISGQASEVDYIGMPAVCFTEPELAQVGYTEAQAKEEGLEYKASKFPYAANGRALSLDDTTGFVKLITLKEDDTLIGAQVAGNGASDIISELGLAIEAGMNAEDIALTVHAHPTLGEMSMEAAEKAIGLPIHTM
>NZ_CP041727.1|WP_002478366.1|1007683_1008988_-|2-oxo-acid-dehydrogenase-subunit-E2
MAFEFRLPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTIEEVVVDEGTVAVVGDVIVKIDAPDAEEMQFKGHDDDSSAKEEPAKEEAKAETEEAPAASASQDEEVDENRKIKAMPSVRKYAREKGVNIKAVAGSGKNGRITKEDIDNHLNGGGAQAASASNESAAASTSEETSAPQTQSVPEGDFPETTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQDLWDHRKKFKEIAAEQGIKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPVVKNADRKSIFQISDEINELAVKARDGKLTSEEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLMEG
>NZ_CP041727.1|WP_002459424.1|1009200_1010178_-|alpha-ketoacid-dehydrogenase-subunit-beta
MAQMTMVQAINNALKTELQNDENVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLTTQGYRPVMEIQFLGFVFEVFDEVAGQIARTRFRSGGTKTAPVTIRTPFGGGVHTPELHADNLEGILAQSPGIKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIEIGKAKVVKEGTDITLIAYGAMVQESVKAAEELEKDGHSVEVIDLRTVQPLDMDTLVASVEKTGRVVVVQEAQRQSGVGANVAAELQERAILSLEAPIARVAAADTVYPFTQAENVWLPNKNDIVEQAKATLEF
>NZ_CP041727.1|WP_002459425.1|1010181_1011294_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MAPKLQAQFDAVKVLNETQSKFEMVQILDVDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDFILPGYRDVPQIIWHGLPLTEAFLFSRGHFKGNQFPEGVNAFSPQIIIGAQYIQTAGVAFGIKKRGKKAVAITYTGDGGSSQGDFYEGINFASAYKAPAIFVIQNNNYAISTPRSKQTAATTLAQKAISVGIPGIQVDGMDPLAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNEDKENEVIERAKDDIKKAIKEADKVEKQKVTDLMDIMYEEMPQNLAEQYEIYKEKESK
>NZ_CP041727.1|WP_002459426.1|1011460_1012090_-|cell-wall-binding-lipoprotein
MKLYRALGVLLASTLLLAGCTTDRKEVRAYEDTIQQASSNEQVINSTGQKLNDLEKQKQQYYKKIVTNNPDTRVKVADKMISNINERSKEFNKEVKAMNASNKEFKKASKHINQIKDDSKRKELKELDDALKDKYKKHDDYAAAYRNILDKERSYFKLLKQKTVMQQQEKEKGEAINKAQKTFKQKFEAYIKALNKVNKEKGDIDKISE
>NZ_CP041727.1|WP_002478367.1|1012227_1012779_+|peptide-deformylase
MLTMKDIIKDGHPTLRAEAQDVDFPLSDEDKQTLKSMREFLINSQDDEIANRYGLRSGVGLAAPQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVVSYSVQYAYLPTGEGCLSVDKNIPGLVHRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHIDAEHPLTPLPDSIEV
>NZ_CP041727.1|WP_002459428.1|1013213_1013432_+|DNA-dependent-RNA-polymerase-auxiliary-subunit-epsilon-family-protein
MAIFKVFYQHNKNEVIVRENTQTIYVEGETEEQVRRYLKDRNYNIEFITKLEGAHLEYEKEHSEHFNVENAE
>NZ_CP041727.1|WP_002478368.1|1013431_1015111_+|ribonuclease-J
MKQLHQNEVGVYALGGLGEVGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYLEQNQDKIVGLFITHGHEDHIGGVPYLLKQINVPIYGGPLALGLIRNKLDEHNLLRNAELIEITEDSVIKSKHFEVSFYLTTHSIPEAYGVIVDTPEGKIVHTGDFKFDFTPVGAPANIAKMAQLGKEGVLCLLSDSTNALVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAPPETFVEPNKIHHIPKHELLILCTGSQGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYKAGAEVIHSKISNIHTSGHGSQGDQQLMLRLIQPKFFLPIHGEYRMLTAHGQTGVDCGVPEENVFIFDIGDVLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFKTNKLLSGPDIISRGFVYMRESGQLIYDAQRRIKTDVISKLNSNKDIQWHQIKSSIIETLQPYLYEKTARKPMILPVIMKVNEE
>NZ_CP041727.1|WP_002459431.1|1015705_1016365_-|TrkA-family-potassium-uptake-protein
MDKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDEARVNEYSDIATHAVIADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHPERDMGRRIAHNVASASVLDYLELSDEHSLVELKASEKMAGQSIVNLDIRAQYGINIIAIKRGKEIIVSPDPNINIEIGDILIMIGHDNDLNRFEKKIVR

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Crispr_ID: NZ_CP041727_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041727_3

1098457-1098551

Orphan

Consensus_repeat	Method
TTCCCCAGCTTGCACATTTCTGTTGAATTTCTTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041727_3

>merge|NZ_CP041727|3|1098457-1098551|CRISPRCasFinder
TTCCCCAGCTTGCACATTTCTGTTGAATTTCTTACAGAAATTCTTTGTGCTGGGGCCCCGTTCCCCAGCTTGCACATTTCTGTTGAATTTCTTAC

>NZ_CP041727|3|3|1098457-1098551|CRISPRCasFinder
TTCCCCAGCTTGCACATTTCTGTTGAATTTCTTAC	AGAAATTCTTTGTGCTGGGGCCCCG
TTCCCCAGCTTGCACATTTCTGTTGAATTTCTTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041727.1\|WP_002478414.1\|1093493_1094348_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP041727.1\|WP_002459514.1\|1102749_1103145_-\|transcriptional-regulator-Spx	unknown	unknown	gnl\|CDD\|179316
NZ_CP041727.1\|WP_002478421.1\|1101797_1102529_-\|adaptor-protein-MecA	unknown	unknown	gnl\|CDD\|235030
NZ_CP041727.1\|WP_002459501.1\|1090227_1092072_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|366411
NZ_CP041727.1\|WP_002459519.1\|1107250_1108192_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP041727.1\|WP_002459509.1\|1097421_1098219_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372699
NZ_CP041727.1\|WP_150861633.1\|1109278_1110343_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP041727.1\|WP_002459506.1\|1095820_1096168_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002478415.1\|1094344_1095154_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|235317
NZ_CP041727.1\|WP_002478416.1\|1095168_1095804_-\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NZ_CP041727.1\|WP_002478418.1\|1097033_1097399_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225223
NZ_CP041727.1\|WP_002478424.1\|1108181_1109264_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP041727.1\|WP_002478420.1\|1100725_1101697_-\|competence-protein-CoiA	unknown	unknown	gnl\|CDD\|226875
NZ_CP041727.1\|WP_002478423.1\|1105572_1107225_-\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173869
NZ_CP041727.1\|WP_002459515.1\|1103432_1104422_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NZ_CP041727.1\|WP_002478413.1\|1092082_1093468_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP041727.1\|WP_002459500.1\|1089169_1089940_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|236308
NZ_CP041727.1\|WP_002478422.1\|1104608_1105364_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP041727.1\|WP_002478417.1\|1096361_1096934_+\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|226601
NZ_CP041727.1\|WP_002478419.1\|1098865_1100674_-\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071

Protein	Function_ID	Function_description	E-value
NZ_CP041727.1\|WP_002459500.1\|1089169_1089940_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|236308	PRK08594, PRK08594, enoyl-[acyl-carrier-protein] reductase FabI.	1.06235e-176
NZ_CP041727.1\|WP_002459514.1\|1102749_1103145_-\|transcriptional-regulator-Spx	gnl\|CDD\|179316	PRK01655, spxA, transcriptional regulator Spx; Reviewed.	1.88335e-88
NZ_CP041727.1\|WP_002478421.1\|1101797_1102529_-\|adaptor-protein-MecA	gnl\|CDD\|235030	PRK02315, PRK02315, adaptor protein MecA.	5.63227e-89
NZ_CP041727.1\|WP_002459501.1\|1090227_1092072_-\|sodium:proton-antiporter	gnl\|CDD\|366411	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.	1.07213e-60
NZ_CP041727.1\|WP_002459509.1\|1097421_1098219_+\|hypothetical-protein	gnl\|CDD\|372699	pfam13743, Thioredoxin_5, Thioredoxin.	8.82108e-51
NZ_CP041727.1\|WP_150861633.1\|1109278_1110343_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.61445e-96
NZ_CP041727.1\|WP_002459515.1\|1103432_1104422_+\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	0
NZ_CP041727.1\|WP_002478415.1\|1094344_1095154_-\|NAD-kinase	gnl\|CDD\|235317	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	0
NZ_CP041727.1\|WP_002478416.1\|1095168_1095804_-\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	2.13901e-97
NZ_CP041727.1\|WP_002478414.1\|1093493_1094348_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	7.96151e-75
NZ_CP041727.1\|WP_002478418.1\|1097033_1097399_+\|hypothetical-protein	gnl\|CDD\|225223	COG2346, COG2346, Truncated hemoglobins [General function prediction only].	5.3197e-44
NZ_CP041727.1\|WP_002478424.1\|1108181_1109264_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	0
NZ_CP041727.1\|WP_002459519.1\|1107250_1108192_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	7.99352e-127
NZ_CP041727.1\|WP_002478423.1\|1105572_1107225_-\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP041727.1\|WP_002478413.1\|1092082_1093468_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	1.01755e-153
NZ_CP041727.1\|WP_002478420.1\|1100725_1101697_-\|competence-protein-CoiA	gnl\|CDD\|226875	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only].	3.7556e-47
NZ_CP041727.1\|WP_002478422.1\|1104608_1105364_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.29549e-25
NZ_CP041727.1\|WP_002478417.1\|1096361_1096934_+\|CYTH-domain-containing-protein	gnl\|CDD\|226601	COG4116, COG4116, Uncharacterized protein conserved in bacteria [Function unknown].	1.37257e-65
NZ_CP041727.1\|WP_002478419.1\|1098865_1100674_-\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0

>NZ_CP041727.1|WP_002459509.1|1097421_1098219_+|hypothetical-protein
MAEELKLMHNESREDANLSPVSKIEIYSFFDPFDSDCFKLSALISKLRIEYNQYIRIRHILNPSLRVLTKCQAQSTSEFDNIALAYKAAELQGRLRAERFIHLMQNEIVPKCDIITEDMICNCIKNAGLDYEVFKEDLQTSKLTESLKVDLHIAREMEIEQSPSLVFFNENIHEEGLKVEGLYPYHIYTYIINELMGTPIEKQLPPKLEIYIQKKQLVTMEELLTIYEWPEKLLNKELKKLVLQQKIEKLYYPEGHFWKSKMPKL
>NZ_CP041727.1|WP_002478418.1|1097033_1097399_+|hypothetical-protein
MTSTPYDIIGQEALYKMIDHFYALVEQDDRINHLFPGDFQETSRKQKQFLTQFLGGPNLYTAEHGHPMLKKRHLRFKITTYERDAWLENMYIAIQAAQFPAGVGEYLYERLRLTANHMVNA
>NZ_CP041727.1|WP_002478417.1|1096361_1096934_+|CYTH-domain-containing-protein
MSTNHEIEFKQLLTASQYDDIRQKYFQNVMPFSQTNFYIDTSDFKLKANHSALRIRVKDDSYELTLKVPATVGLTEYNHSTNLIPEIGKTLTLQQFPEDIQHQLMQFDITDDELNILGSLTTHRMEVYFKHQLLVLDHSEYLGTEDYELEFEVNDYEQGKQIFLNFLQECGIDYVKPKNKVQRFFDYKAQ
>NZ_CP041727.1|WP_002459506.1|1095820_1096168_-|hypothetical-protein
MRIYVNEIKVKDDGIYCYSDDPTDGLEEVGQMLVDSDNYGFAYILDDGQSYSYLIFVEETWSMLHENRDKTIIVNDDLKLEHFQEEFDFILDNIVGNNNYGKEFVAAVEKTFELE
>NZ_CP041727.1|WP_002478416.1|1095168_1095804_-|GTP-pyrophosphokinase-family-protein
MNQWDQFLTPYKQAVDELKVKLKGLRKQYEVGEHASPIEFVTGRVKPITSIIDKANKRGIPFDRLQQEMYDIAGLRMMCQFVDDIDVVVKMLRQRQDFRVIEERDYINNTKQSGYRSYHVIIEYPIETLDGQKKILAEIQIRTLAMNFWATIEHTLRYKYDGDYPDEIQHRLERAAEAAYLLDEEMSEIKEEIQEAQKYYSQKRAKKHDNN
>NZ_CP041727.1|WP_002478415.1|1094344_1095154_-|NAD-kinase
MRYTILSKGDSKSNALKHKMISHMKDFHMTQNDENPEIVISVGGDGTLLQAFHQYSHMLSQVAFVGVHTGHLGFYADWLPHEVEKLIIEINNSEFQVIEYPLLEMIVRYNDNGYETRYLALNEATMKTDNGSTLVVDVNIRGKHFERFRGDGLCISTPSGSTAYNKALGGALIHPSLEAIQIAEIASINNRVFRTVGSPLVLPKHHTCYITPVNHDTIRTTIDHVSIKHKNVSGIQYRVANEKVRFARFRPFPFWKRVHDSFIESDDER
>NZ_CP041727.1|WP_002478414.1|1093493_1094348_-|RluA-family-pseudouridine-synthase
MRFTYAIKSPDVLKSFLQQQGFSKKTTSAIKQNGALLVNHEPVTVRYQLQPGDKLTIILPTEIPSANLQAFHHPLDIVYEDDYLLIVCKPSLQNCAPSREHPHESLIEQVLAYCHENDNDFTPHIVTRLDRNTTGLVLLAKHGHIHHLLSHIKINKRYIALCHGATQPEGIIEAPIARANDSIITRQVSSTGKYAKSTYRTLNSKQNVSLCEVTLHTGRTHQIRVHFQYIGHPLIGDALYGGNHDMIHNHCLQCTALQFKHPILHKTISITIDYKQLICLYNML
>NZ_CP041727.1|WP_002478413.1|1092082_1093468_-|magnesium-transporter
MSMEIEKADNDQHAVYNQSLLDELLNNNDIDDFRKEFLAMHSYEQSEYFEDSDNVIRHKIFQLLSPQEVAGFFDQLEIDDEDYEQLFDTMNAQYASKVLEEMSYDNAVDILNELSKPKVASLLTLMNKDDANEIKALLHYEEDTAGGIMTTEYISLEAETPVKEALMLVKSQAPDAETIYVIFATNVEGQLVGVLSLRDLIVSENDAYIEDIMSERVISVNVADDQEHVAQKMRDYDFIALPVVDYQDHLLGIITIDDILDVMDEEASEDYSRLAGVSDIDSTNDSIVKTAAKRLPWLIILTFLGMITATILGNFEDTLSKVALLAAFIPIISGMSGNSGTQSLAVSVRNISTGEIDEQSKFRVALREAGSGMLSGSVCAIILFLIIVVVFKQPFLALIVAASLTIAMTVGTLVGSMIPLLMNKINIDPAVASGPFITTINDIVSMLIYFGLATSFMSYLT
>NZ_CP041727.1|WP_002459501.1|1090227_1092072_-|sodium:proton-antiporter
MEFFSLVIVVVAAFFTPILVNRLNISFLPVVVAEILMGVIIGNSFLNLVEKDSMLNILSTLGFIFLMFLSGLEIDFSAFKKDTRNRQGQSQEDKNVPSHLNMALTVFIFIMIISIVLAYAFKWLGLVDDVLLMIIIISTISLGVVVPTLKEMNIMRTTIGQFILLVAVLADLFTMVLLTVYGALNGQGGGSIWLSAILVVFTAIFYIIGILFKHMSFLQKLMSGTTQIGIRAIFALIILLVALAEGVGAEYILGAFLAGVVVSLLKPDEELVQKLDSFGYGFFIPIFFIMVGVDLDIPSLIKEPALLIIIPVLIGAFLISKLLPVLFIRRWFDTKTTIASAFLLTSTLSLVIAAAKIAEQLKTISSETSGILILSAVITCVFVPVVFKKLFPIPDEVNRRIEVALIGKNQLTIPIAQNLTSQLYNVSLYFRKDLSDHRHLADSITVLEINDYDEAILTRLGLFDNDIVVCATNDDDINRRVAMMAEEHGVNRVICRLETMTDDVGMKNSGIEIFSNFLSNKIFLKGLIETPNMLNLLSNVETSLYEIEMLNHKYENLELRNFPFGGDVIFVRIIRNNESIVPHGDTQLRYKDRLIVTGSKEYVDELKGELEFYY
>NZ_CP041727.1|WP_002459500.1|1089169_1089940_-|enoyl-ACP-reductase-FabI
MLNLENKTFVIMGIANKRSIGFGVAKVLDKLGAKLVFTYRKERSRKELEKLLEQLNQNDPKLYQIDVQKDEDVINGFAKIGEEVGNIDGVYHSIAFANIEDLRGRFSETSREGFLLAQDISSYSLTLVAHEAKKIMPHGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGQDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLRRNVDQEEVGKTAAYLLSDLSSGVTGENIHVDSGFHAIK
>NZ_CP041727.1|WP_002478419.1|1098865_1100674_-|oligoendopeptidase-F
MSQQLTREEQEQQYPQYTWDLTTIFESDEAFEQAFKSVENKIGEEQRYQGHLGDNAQTLYEALAFEDELGSQLEKVYVYAHLKQDQDTANDKYTGFESRAHQLIIKFSSAWSFLIPEILQIDEVKLQTFIDENDNLKRYAFDLKLINEKREHILDADTEKLLTEAQDALSTPSNVYGMFSNADLEFEDAIDKDGNTHPLTQGTFIKYLESDDRKLRESAYKNVYKAYGSHNNMLGATLAGEVKKNVFNARTHHYKSARQRALSNNHIPEEVYDNLVDTVHKYLPLLHRYTKLRQELLGLDDLKMYDLYTPLVKDIKFEMPYEEAKSWMLKALEPMGEEYLNVVKEGLENRWVDVYENKGKRSGGYSSGAHLTNPFILLNWSDTISDLYTLIHEFGHSAHSYFSRQNQPSNASDYSIFVAEVASTCNEALLSDYMDKHLDDERRLLLLNQELERFRATLFRQTMFAEFEHKIHQIEEAGEPLTPTRMNEEYAALNKQYFGETVETDEDISKEWSRIPHFYMNYYVYQYATGYSAAQSLSHQILTEGKPAVERYINEFLKKGSSNYPIEILKNAGVDMTSPKPIEQACEVFEQKLDAFEKLIKA
>NZ_CP041727.1|WP_002478420.1|1100725_1101697_-|competence-protein-CoiA
MLSAFNNKRQLIKAVDAMNSEHYYCPSCRELVILKRGYKVKAHFAHRSHSLCIHAKGESQLHYQMKYHIAQSYLLHGQKVEIEPFLTDIQQYPDLLINDKFVIELQLSTIPFNIIKQRTKGLMSVGKHVIWLLQGLQFSRNQLTLTQFQSSFIHPEQRTLYEWDDREKSFYCYHHIQHLGGKRFSARKTQTSPLNILKLQSPCPSVSFKLANHHIKYYIQQCRRQNSVLEPTLSAIYQLRLSDDQATQFLGYIFPNQIYINSHPIAWQAQLLLYLAHKINFNSFKSSVKFRNLLFSNATEEDILNMLITQYKQTFDSMFKRAK
>NZ_CP041727.1|WP_002478421.1|1101797_1102529_-|adaptor-protein-MecA
MRIERVDETTVKLFITYSDIEARGFSREDLWTNRKRGEEFFWSMMDEINQEEEFVVEGPLWIQVHAFEKGVEVLISKSKNDEAMDEAMNMSDDDANDQFDQQLNELLAASVLDKDQKADDMFEQRANNKSTNKSDTVQSQRANMRTIIVKFDDLEHVIDYAYHHNQATDSYEDLLYMLDSNYYYAVHFDEKVEQEDINDFYSQLLEYAYPTDKTEVYLDDYGKIIMSYNVTAQVRRYFPDTAE
>NZ_CP041727.1|WP_002459514.1|1102749_1103145_-|transcriptional-regulator-Spx
MVTLFTSPSCTSCRKAKAWLQEHDIPYTERNIFSEHLTIDEIKQILKMTEDGTDEIISTRSKTYQKLNVDIDSLPLQDLYSIIQDNPGLLRRPIILDDKRLQVGYNEDEIRRFLPRKVRTFQLKEAQRLVD
>NZ_CP041727.1|WP_002459515.1|1103432_1104422_+|tryptophan--tRNA-ligase
METLFSGIQPSGIPTLGNYIGALKQFVEVQDDYDCFFCIVDQHAITVPQDRLKLRKQIKQLAAIYLASGIDPDKSTLFIQSEVPAHVQAGWMLTTIASVGELERMTQYKDKAQKRTDGIPAGLLTYPPLMAADIVLYNTNIVPVGEDQKQHMELTRNLVERFNSRYNDVLTKPEIRMPKIGGRVMSLQEPTKKMSKSDDNQKNFISLLDEPHIAAKKIKSAVTDSDGIIKFDRDNKPGISNLLSIYSSLTDESIQDIEQKYEGEGYGKLKSDLAEIVKDFLTTFQEKYNAFYQSEELDIILDKGRDKAHKASMKTLKKMEKAMGLGRKR
>NZ_CP041727.1|WP_002478422.1|1104608_1105364_+|class-I-SAM-dependent-methyltransferase
MSKEPGHTFLAKLGKTRLRPGGKKATDWLITQGQFSYKKQVLEVACNMCTTSIYLAKTYQCHITAVDLNKKALDKGRLNVKKAHLEHLIQLQQANAIRLPFEDNQFDIILNEAMLTMLPMKAKQQAVAEYFRVLKPGGILLTQDVAVMNDDKEKEVIQHLSSAINVNVTPLTPEHWTQLYKEAGFSSVHNHYEPMTLMTPKGMIYDEGIFGTIKIIKNALKKDNRSMFKRMFITFKNHKSDLNYIVHAATK
>NZ_CP041727.1|WP_002478423.1|1105572_1107225_-|peptide-ABC-transporter-substrate-binding-protein
MKKLMSILAFFLVTSTALTGCGNKESLYSDKGNVFRKVLTQDMSSLDTGLITEEISFEVTAQAFEGLYVLGRGDKAELGVAQDFPKKSNGGKTLTVKLKKDAKWSNGDPVTAQDFVYAWRKVVNPKTGSEFAYIMNDIKNASQINTGKKPVKDLGIKALDSHTLKIDLEKPIPYINQLLALNTFDPQNEKIAKKYGESYGTKANKAVYNGPFKVDQWKPEDKIMLSKNDKYWDRDKVKLDKVNYKVLKDQQAGASLYDTGSIDDTTITADQVNKYKKSSGLKYRLTSGTFFIKMNEKEFPAFKNKNLRLAIAQSINKQGFVDSVKNNGSTPANTFTAKGVAKSPNNKDFASTIDSELKYNPKSAKSHWDKAKNELGKNQIAFSMNTEDTPDAKIAAEYIKSQVEKNLPGVTLKIKQLPFKQRVNLELTENFQASLGGWSADYPDPTAYLEIMTTGNAQNNTDWGNKKYDSLIKSAKGDLLQKTNERYQAMKQAEELLLDDAPVAPIYQKGEAHLMNPQVKNFYFHKVGPNYSLKQVYIDKSIDRETGKKK
>NZ_CP041727.1|WP_002459519.1|1107250_1108192_-|ABC-transporter-ATP-binding-protein
MKNKDILLEVKHLKQYFNEGKRNEVRAIEDISFNIYKGETLGLVGESGCGKSTTGKAIIKLNEITSGEIMYDGVDIQKIKNRKDSLRFNKKIQMIFQDPYASLNPRLKVMDIVAEGIDIHKMAVNKRDRKKRVYDLLETVGLSKEHANRYPHEFSGGQRQRIGIARALAVEPEFIIADEPISALDVSIQAQVVNLMLKLQQERGITFLFIAHDLSMVKYISDRIAVMYFGKIVELGPSEEIYHHPLHDYTKSLLSAVPQPDPESERTRERVAYIADDNLDNDRTLMEIRPEHYVFVTNEEAEQLKTQSMVSHT
>NZ_CP041727.1|WP_002478424.1|1108181_1109264_-|ABC-transporter-ATP-binding-protein
MSERVLEVNDLHVSFDINAGEVQAVRGVDFYLNKGETLAIVGESGSGKSVTTKAITKLFQGDAGRIKQGEIIFLGEDLAQKSENELIKLRGKDISMIFQDPMTSLNPTMQIGKQVMEPLIKHKHFSKSQAKKRALEILNLVGLPNAEKRFKAYPHQFSGGQRQRIVIATALACEPKVLIADEPTTALDVTMQAQILDLMKKLQQKINTSIIFITHDLGVVANIADRVAVMYGGQMIETGDVDEIFYDPKHPYTWGLLSSMPDLDTKNDTPLVAIPGTPPDLLNPPQGDAFARRSQYALDVDFKAEPPWFKISPTHFVKSWLLDERAPKVEPPEMVQKRAHNMPNNYDKPLKVERVSFNEK
>NZ_CP041727.1|WP_150861633.1|1109278_1110343_-|ABC-transporter-permease
MTQNIDKSLDDQSNAAMTHTSEGIMATDFVMRDIDLNKEPEMQRESKNFWQDAWAQLKRNKLAIVGMIGLILIVILAFIGPMLSHHDYAEQDVNRRNLPAKIPVLDKVSFLPFDGTGSDGSNAYDKAKVNENFWFGTDQLGRDLWTRTWKGAQISLFIGIVAAILDIFIGVIYGAISGFFGGRVDNVMQRILEIVASIPNLIVVILFVLIFEPSIWTIILAMSITGWLGMSRVVRGEFLKLKNLEFVMASRTLGASKFNLIFKHILPNTLGAIVVTSMFTVPSAIFFEAFLSFIGIGVPAPQTSLGSLVNDGRAMLLIHPHELFIPATVLSLLILFFYLFSDGLRDAFDPKMRK

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Crispr_ID: NZ_CP041727_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041727_4

1643059-1643141

Orphan

Consensus_repeat	Method
CACCCCAACTTGCTTTGCTTGGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041727_4

>merge|NZ_CP041727|4|1643059-1643141|CRISPRCasFinder
CACCCCAACTTGCTTTGCTTGGTGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCACTCCAACTTGCTTTGCTTGGTGAA

>NZ_CP041727|4|4|1643059-1643141|CRISPRCasFinder
CACCCCAACTTGCTTTGCTTGGTGAA	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC
CACTCCAACTTGCTTTGCTTGGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041727.1\|WP_002479267.1\|1644972_1645995_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP041727.1\|WP_002461147.1\|1652339_1652870_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP041727.1\|WP_002479272.1\|1638444_1639560_+\|YibE/F-family-protein	unknown	unknown	gnl\|CDD\|227725
NZ_CP041727.1\|WP_012991034.1\|1651155_1652052_-\|cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|107204
NZ_CP041727.1\|WP_014533367.1\|1632824_1637321_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP041727.1\|WP_002479268.1\|1644310_1644970_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP041727.1\|WP_002479269.1\|1643439_1644279_-\|dipeptide-ABC-transporter-glycylmethionine-binding-lipoprotein	unknown	unknown	gnl\|CDD\|224381
NZ_CP041727.1\|WP_002461161.1\|1640671_1641067_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240046
NZ_CP041727.1\|WP_002461152.1\|1646199_1647942_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041727.1\|WP_002479275.1\|1631331_1632807_-\|glutamate-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|237213
NZ_CP041727.1\|WP_002461163.1\|1639556_1640339_+\|YibE/F-family-protein	unknown	unknown	gnl\|CDD\|227725
NZ_CP041727.1\|WP_002461144.1\|1654449_1654704_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002479273.1\|1637464_1638349_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP041727.1\|WP_002479277.1\|1627739_1629377_-\|alpha,alpha-phosphotrehalase	unknown	unknown	gnl\|CDD\|274115
NZ_CP041727.1\|WP_002479265.1\|1650003_1651149_-\|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|181076
NZ_CP041727.1\|WP_002479266.1\|1647938_1649720_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041727.1\|WP_002479263.1\|1652976_1654308_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_CP041727.1\|WP_002461160.1\|1641186_1641456_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002479270.1\|1641661_1642633_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP041727.1\|WP_002479276.1\|1629453_1630899_-\|PTS-ascorbate-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273916

Protein	Function_ID	Function_description	E-value
NZ_CP041727.1\|WP_002479267.1\|1644972_1645995_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	1.13685e-160
NZ_CP041727.1\|WP_002461147.1\|1652339_1652870_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.05235e-08
NZ_CP041727.1\|WP_002479272.1\|1638444_1639560_+\|YibE/F-family-protein	gnl\|CDD\|227725	COG5438, COG5438, Predicted multitransmembrane protein [Function unknown].	3.15808e-83
NZ_CP041727.1\|WP_012991034.1\|1651155_1652052_-\|cysteine-synthase-family-protein	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	4.20835e-125
NZ_CP041727.1\|WP_014533367.1\|1632824_1637321_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP041727.1\|WP_002479268.1\|1644310_1644970_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	1.08015e-93
NZ_CP041727.1\|WP_002479269.1\|1643439_1644279_-\|dipeptide-ABC-transporter-glycylmethionine-binding-lipoprotein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	9.4256e-99
NZ_CP041727.1\|WP_002461161.1\|1640671_1641067_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	9.21355e-32
NZ_CP041727.1\|WP_002479275.1\|1631331_1632807_-\|glutamate-synthase-subunit-beta	gnl\|CDD\|237213	PRK12810, gltD, glutamate synthase subunit beta; Reviewed.	0
NZ_CP041727.1\|WP_002461163.1\|1639556_1640339_+\|YibE/F-family-protein	gnl\|CDD\|227725	COG5438, COG5438, Predicted multitransmembrane protein [Function unknown].	3.94138e-67
NZ_CP041727.1\|WP_002479273.1\|1637464_1638349_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.89788e-30
NZ_CP041727.1\|WP_002479277.1\|1627739_1629377_-\|alpha,alpha-phosphotrehalase	gnl\|CDD\|274115	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.	0
NZ_CP041727.1\|WP_002479265.1\|1650003_1651149_-\|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase	gnl\|CDD\|181076	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase.	0
NZ_CP041727.1\|WP_002479266.1\|1647938_1649720_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.50073e-125
NZ_CP041727.1\|WP_002479263.1\|1652976_1654308_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.01766e-156
NZ_CP041727.1\|WP_002461152.1\|1646199_1647942_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.72185e-127
NZ_CP041727.1\|WP_002479270.1\|1641661_1642633_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	4.29543e-40
NZ_CP041727.1\|WP_002479276.1\|1629453_1630899_-\|PTS-ascorbate-transporter-subunit-IIA	gnl\|CDD\|273916	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component. This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.	0

>NZ_CP041727.1|WP_002479270.1|1641661_1642633_-|LysM-peptidoglycan-binding-domain-containing-protein
MKKKYMAAIIGTSALSTVFAHQAEAATTHTVKAGESVWSISHKYGMSIARLKSLNGLKSNLIFPNQVLKVSGSSKSTANRTANTSSSTYTVQPGDSLSLIASKYNTTYQKIMQLNGLNNFFIYPGQKLKVTGTAAKNNTKPSQSSKSSIYTVQPGDSLSLIASKYNTTYQKIMQLNGLNNFFIYPGQKLKVTGTASGSSTRTSNSNSYRTPIFSHSNLYTWGQCTWHVFNRRAAIGKGISTYWWNANNWDNAAAADGYTINYTPTVGSIAQTDIGYYGHVAFVERVNSDGSILVSEMNYSASPGIMTYRTIPSYQVSSYRYIH
>NZ_CP041727.1|WP_002461160.1|1641186_1641456_+|hypothetical-protein
MAKKSKLTHVSNLISLAGFLVDGYNGIKHDAKEKNLVYLSLGLSTAGTLLDFYVSLKSPKKIRKLAALFLFIINVTRLATSYRKIKEDF
>NZ_CP041727.1|WP_002461161.1|1640671_1641067_-|NUDIX-domain-containing-protein
MVKVIRCVCLVEETEDKILLVQVRHREKYYFPGGKIEAHESMLDAIQREVNEELKLDIPQTQFEYIGTVVGQAYPQKNMQTELNGYRVTTDIDWEQIQIDNEITDIKWVDKTDTHLIAPAVQTWIAQISSK
>NZ_CP041727.1|WP_002461163.1|1639556_1640339_+|YibE/F-family-protein
MSAITLLGFILFLLMIVFGGTKGLISFLTLFLNFIILLISIVCIMLGIPIYVVLVIFCIVVASCNLFILNSYNIKTKAAFLGTMITIMILILGIYLSVRLGHLQGFTTEQQDETYIFSMNIGIDMVQFMVFTIVLAVIAAVIDLAITISSPMYELHEANPKLSQTDLFKSGMTVGREILATSANTIYLAYFGGQLTLFFWFFKLNYSFEHIINSKIFTQEFISILLGGIAIAISIPITAWITAFFIKHKKLSATHSQTIE
>NZ_CP041727.1|WP_002479272.1|1638444_1639560_+|YibE/F-family-protein
MMQYKNILTSRFFWLICSLAVLILAVFIFTFFNDRLYHTPIAKITNVEQVHQQKITDEHHNTDTKYKQRLTLEILNGKFQHQTTTINHTYVASQADTEAFSKNNKVLLHITDSLKSATIIEKKRDSLVVAISGVFILAVLIVGKKVGLQSILSLAFNTCAVLLAIQLHNQHPSLSLFGLMTIAVTLATIITLLLVTGLKLRSWITIASTLLGTLLSIGITALVIRLTDGAGIKYETMSFLTLPPKEVFLASVLIGSLGAVMDVAITLSSGMYEIYQRTPDISLQRLAVAGRRIGQDIMGTMTNILLFSYLSGSLPMLLIYLKNDNTFTYTISMNWSLEITRAISGGIGIVLTIPITITLMSLFIKLRGEPS
>NZ_CP041727.1|WP_002479273.1|1637464_1638349_+|LysR-family-transcriptional-regulator
MEIKQLKYFLEVAKREHLSDAALELDIAQSAISRQIQQLEDELQVKLFKRQGRNIRLTTAGKDFVIHATKLLNQVDETLTLFRQQESNNLYSINLGYEQGYVAERILPLIQTFERQYDSKIIPQQVSQDSTKQILVDALDVAITELTPTLQQNNDLNVTLLYEETYHLYLPKEEPLALAMNPHLAQFEGATIFTLTPLSTTMIALIEQLTKATLHVVTHPALAQYLLAQHRGFILAPDYQRLTVSSLDYKDISLNHTPLKRSICIVVRKENNKPDVQQLTSLIQTLFNRVSTYH
>NZ_CP041727.1|WP_014533367.1|1632824_1637321_-|glutamate-synthase-large-subunit
MCDLTIKRGLYDYREEHDACGIGFYANMDNKRSYDIVDKSLEMLRRLDHRGGVGADGITGDGAGIMTEIPFDYFNKHVDFELPCEGEYAVGLFFSQKVIVNTRYQKMIDLLFRSEGLKVLGYREVPVNKEVLAQHVAKTMPYVYQIFVDITNHQDIEKKLYLARKQIEHEAEQQGLELYFTSLSHKTIVYKGWLRSDQIKGLYLDLQHSDYQSKFGLVHSRFSTNTFPSWKRAHPNRMLMHNGEINTIQGNVNWMRARQRQLIQTLFPNDAHKICQIVDEDGSDSAIVDNALEFLTLAMEPEQAAMLLIPEPWQHNKANDATVRAFYEFYSYLMEPWDGPTMISFCNGDKIGALTDRNGLRPGRYTITKDNYIVFSSEVGVVDIPEANVAYKGQLNPGKLLLVDFETQQVIENNELKSRIATQYPYKAWLAKHKIDLHLEQIGYQSSCLSETTIFKLQQQFGYTKEDINKYMSELVTGKKDPIGAMGYDVPIAVLNEQPQSLFNYFKQLFAQVTNPPIDAYREKIVTSELSYLGAEGNILHPTPEALKRIQLQRPVLTPSQLEYIESSEFKTVRLSTLYTNVLADALELLGQQAIEAVKDGAEILVLDDSLLSQKTAYALPILLATSYIHQLLIKENLRMNTSIVAYSGETREVHHVACLLGYGANAVVPYLAQATIEQLTVQKKLTGKVSNNVETYTQILSEGVIKVMAKMGISTVQSYHGAQIFEAIGLSHEVIERYFPGTPSKLSGLSIAQIEAENKAQQQRHLDYLPSGSVFQWRQQGQHHVFNPLTIFKLQHACRENDYQQFKEFTAAVHSKRFDHIRDLLTFKQQHPISIEEVESAEEIVRRFNTGAMSYGSISAEAHETLAKAMNQLGGKSNSGEGGEHAYRYKQQADGSNISSAIKQVASGRFGVTSEYLQHAKELQIKVAQGAKPGEGGQLPGSKVYPWIAKVRGATPGIGLISPPPHHDIYSIEDLAQLIHDLKNANRNADVAVKLVSKSGVGTIASGVAKAFADKIVISGYDGGTGASPKTSIQHAGLPWEIGLAETHQTLKLNDLRSRVKIETDGKLLTGRDVALACALGAEEFGFATAPLVVLGCVMMRVCHKDTCPVGIATQNKDLRALFNGKAEHVVNFMYFIAEEMREILASLGLKRVEDLIGRTDLLERATDIPPRSKAATLDLSPLLEPIAGVNYQQMMQQHHLEQGFDLSSLYYDAQIAIKEGQHFEGTYVIHNEQRDVGVITGSTITEYYGPDGLPEDTIIVKTSGHAGQSIAAFAPQGLTIQHTGDANDYVGKGLSGGKICIKAPKPEREKDIIVGNVCFYGATAGEAYINGRAGERFCIRNSGVNVVVEGIGDHGLEYMTGGHVLILGDVGKNFGQGMSGGVCYVFPSDVEAFKATHALETLAFKQVVHQEEQALIRQMLEAHIAYTNSTKARDVLKQFDQIESRAVKVIPKDYELMMQKIEIKRRQYSSDADALLAAFNDDSTSIDKALQPTLVY
>NZ_CP041727.1|WP_002479275.1|1631331_1632807_-|glutamate-synthase-subunit-beta
MGEYKGFMMYDKQSLTELSLADRLLNHQPFQQRFTKEEARIQGARCMDCGTPFCQTGLPYGKETIGCPIGNYIPEWNDLVYHQDFKSAYERLKETNNFPEFTGRVCPAPCENSCVMKINRESVAIKGIERTIIDEAYEHGWVSPKYPRTSRNQSVAIVGSGPAGLTAAEELNYQGYQVTVFEKAHEPGGLLMYGIPNMKLDKNVVRRRIALMEEAGICFKTDVEVGVDISKTTLEDTFDAIILCTGSQQARDLPLEGRMGFGIHFAMDYLTEQMQVLNGEINQPTITAKNKNVIVIGAGDTGADCVATALRENCKSVVQFNKYTRLPEKMTVDYNTAWPLAMPVFKMDYAHKEYEARFGKEPRAYGVQTMRYDVDHLGYVRGVFTQVLEQTENGMSIVDGTERHWPADLVLLSIGFVGTENTVPHAFHIATERNKIVADDINYQTNHPHIFAAGDARRGQSLVVWAIREGRGVAKAVHHYLTQKNMAQHIK
>NZ_CP041727.1|WP_002479276.1|1629453_1630899_-|PTS-ascorbate-transporter-subunit-IIA
MTVNRKDVQHIVQAIGGKENIDAATHCVTRLRIVLKDDNKVNKDMLSDNPLVKGQFKANHQYQIVIGPGTVEEVYKHFIDETGVEEASKDEAKQVAAKKGNPLQRLIKLLGDIFIPILPALVTAGLLMGINNLLTMKGLFGPKPLVEQYQQLGDISNIVNVIASTAFIFLPALIGWSSMRVFGGSPILGLVLGLILMHPQLVSQYDIGKGHIPTWHLFGLEIKQLNYQGQVLPVLFAAYVLAQIEKALNKVVHDSIKMLVVGPIALLVTGFLAFVIIGPIALVIGTGITGAIQFVFEHAGWLGGFLYGLLYGPLVITGLHHMFLAVDFQLMGSKLGGTYLWPIVAISNMCQGSAAFGAWYVYKRRKMVKEEGLALTSSISGILGVTEPAMFGVNLPLKYPFVAAISTSAILGAFVGANRVLGNVGVGGFPAFISIQHQFWWPVYLPITIAALVIPAILTVFLAKFSHEKTKKIVTPPEAEK
>NZ_CP041727.1|WP_002479277.1|1627739_1629377_-|alpha,alpha-phosphotrehalase
MANNDWRKSVVYQIYPKSFNDTTGNGEGDLQGIIDKLDYIQYLGVDYIWLTPIYESPMNDNGYDISNYFKINERFGTIEDFQTLISEAHDRNLKVMLDIVINHTSTEHEWFKQAISSKDNPYRDFYFFKTSPDGPPTNWESKFGGNAWQYDEKTDAYYLHLFDVTQADLNWGNEKVRQALYDIVNYWIKFGVDGFRFDVINLISKGEFKDSSKIGKEFYTDGPRVHQYLHELNRNTFGDKGMMTVGEMSSTTIEHCIKYTQPERQELNSVFHFHHLKVDYLNGEKWSNAKLNFLKLKEILMEWQIGIYQGGGWNAIFWCNHDQPRVVSRFGDDSTEENRQASAKMLAIVLHMLQGTPYIYQGEEIGMTNPHFTTIEQYRDIESHNAYEKLTAQGESDAEALTILGQKSRDNSRTPMQWNNEAYGGFTTGKPWIDLAQNYEQVNVQQAMQDKQSILQTYRQLIDIRHQYDIVTYGNIEALYMAHDKLFIYRRNYQATSWLVVANFSQQPVRLPEDLNIKGKTIIRNGEISNRQITGYGALVVEQEL
>NZ_CP041727.1|WP_002479269.1|1643439_1644279_-|dipeptide-ABC-transporter-glycylmethionine-binding-lipoprotein
MKRLFTLVLAFIFVLAACGGGNNKKVTIGVASNDTAAWEKVKELAKKDHIDIEIKHFSDYNVPNKALSDGDIDMNAFQHFAFLNAYKKAHKDAKISAISTTVLAPLGIYSKKVKNIKNVKDGAQVIIPNDVSNQARALKLLEAAGLIKLKDNFGLSGSIKDIKDNPKHLNIKAVDAQQTARALDDVDLSVINNGVATKSGLDAKKDPIYLEKSESDAVKPYINLVAVNDKDKDNKTYQKIVKLYHSKEAQEALKKDIKDGEKYINLSQKEIEEIENSLK
>NZ_CP041727.1|WP_002479268.1|1644310_1644970_-|ABC-transporter-permease
MFGSSIDSSQLLQALYETLYMVTISLIIGALIGIPLGVLLVITRRHGIWPNTVIHQLLNPMINILRSIPFIILLIAIVPFTKLLVGTSIGTTAAIVPLTVYVAPYIARLVENSLLEVDDGIIEAAKAMGASPLQIIRYFLIPEALGSLVLAITTAIIGLIGSTAMAGAVGGGGIGDLALVYGYQRFDTLVIIITVIVLVILVQFIQTLGNFISRRLRRN
>NZ_CP041727.1|WP_002479267.1|1644972_1645995_-|methionine-ABC-transporter-ATP-binding-protein
MIEFKKVNKRFNKKGETIQALKDVSFKIEKHDIFGVIGYSGAGKSTLVRLVNQLEQVSDGEVIVDGKDINTYSEKDLRNVKKDIGMIFQHFNLLNSATVFKNVAMPLILSHKHKDEIKAKVEEMLEFVGLADKMHQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTSSILKLLSNVNQTFGVTIMLITHEMSVIQKICNRVAVMEQGEVIELGTVKEVFSHPQTETTKNFVSTVINTEPSTQLQALFKLVNDTSHVVYSLFLDAQQVTSPLINTLIRNYGVDVNIIYSSMSAIQENTVCYLWLDIQLNDVDRTRIENYFSQQHIEYEEVV
>NZ_CP041727.1|WP_002461152.1|1646199_1647942_-|ABC-transporter-ATP-binding-protein
MNIQTLFSLSKQGKRDLYKTTLFTSIHQLSVILPVILLIMLTDEMISHIKIGEPHTINLWKYIILSLTLLTLIYMIYLKTYQQMYVNSGKETAIMRIRLAEKFRKLPLSYLSSRDLSDFTSTLMDDVSVIEKQLTSDFANLIAGIVSSMVTLIVLSFYNWQMSAILFLIMPIALLFIAISKFATAATNKKNRQLKLNISEALQEYLENIKVIKSSNQKEKYIQQLKQTIRAIVPWSILYEILVGLFISISYNIIRMGLGIMVLVGTVLLVNQQLSILGFILFVFIAVRIYDPLTNSLYKIGEFIYSLVSAKRIKDIFDIKEQGGSKDIQLSQFDIHFNHVSFGYNKNQVIHDVTFTAHQGEITALVGPSGCGKSTLSKLACRFWDLKTGDITIDGHNINDIHPEHLLSYYSFVFQDVTLFNDTVFNNIKVGNYQATDEEIYAAAKMANCQQFIDKLPEGYQTIIGENGQTLSGGERQRISIARAFLKQAPIILLDEATSSLDPENETLIQEAISKLIQDKTVIVIAHRLKTIEHCDQIIVLKDGKIVEKGKHQELMSNQDLYQHLVTLQRKSSDWKVNGV
>NZ_CP041727.1|WP_002479266.1|1647938_1649720_-|ABC-transporter-ATP-binding-protein
MKNQHLDKLKTLMGKYKYLFYLAILLSVVSSVISLGAYLNVYYVIESMLSAKGNLNKSVIEKMTYFGWQSVIYVSVAFMFYGLALLLSHIVAFNTVAKYRITLIDYMNELPLGYFQKRQSGKLRKLIEKNTEEVEHYIAHQLPDMAQALTTPIAFLVLIFIFDWKLSLICLIPVILGFLLLKFMMGEDSKAFLEKYQEASANMGNDVVEYVRGISVVKIFGQTAFSFKSFNHAIENYRDFTVSYALSMKKAMSGYIVCVYGIFSFLIPATIIFFNHSEQLKSLLLSYIFFVIFTPLVAFMLMRIMESSYKAMIIFHAMDHLDKKIYKAKALSMPTISIKPTRFDITFNKVSFTYEDMKQKAINKLSFTCHPNSVTAIVGPSGSGKSTIFNLITRFYDLDEGSVLVGGVDVKKMSYEDLMSNISFVFQETKLFKLSLLENIRFYKPDATKAEVERVVDQAQCREIINKMPNGLDTVFGTSGSYLSGGEIQRITIARAMLKDAPIVLLDEATAFSDAENEYKIQQALNSMMKNKTVIMIAHRLSTVTHADQILVIDEGELVEEGQHRSLMKENGVYARMYNNYQQSVNWRIGVER
>NZ_CP041727.1|WP_002479265.1|1650003_1651149_-|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase
MNKKTQMVHGGHTTDTYTGAVTTPIYQTSTYLQDDIGDLRQGYEYSRTANPTRGAIESVIADLEHGKHGFAFGSGMAAVSAVMMLLDKGDHIILNSDVYGGTYRALTKVFTRYGIEVDFVDTSYIENVEQFIKPQTRMLYIETPSNPLLRVTDIKKTAEIAKQHQLISVVDNTFMTPYYQNPLDFGIDIVLHSATKYIGGHSDVVAGLVVTANDELGERIGFISNSTGGVLGPQDSYLLVRGVKTLGLRMEQINRNVTSIIEMLQQHPAVQQVFHPSIKTHLNHDVHLVQASGHTGVVAFEVKDTELAKRVIRETQYFTLAESLGAVESLISVPALMTHASIPPDIRAKEGITDGLIRLSIGIEDTEDLVNDLIQALDTIK
>NZ_CP041727.1|WP_012991034.1|1651155_1652052_-|cysteine-synthase-family-protein
MIAYDLIGHTPLVLLESYSDNNVQIYAKLEQFNPGGSVKDRLGKYLIETALHEGRLNLGDTIVEATAGNTGIGLAIAANRFNINCKIFAPDGFSEEKIAIMRALGADISRTPKAEGMLGAQYQARQYAAATGAVYMNQFESQDNPAAYKNTLGQEITHSLPQIDYFVAGIGSGGTFTGVASHLKPFNVKNILVEPEGSILNGGESHPHDIEGIGSEKWPVFLKRNLVDDIITVSDVDGFNNVRQLAQREGLLVGSSSGAALQGALEIKQQLDKGVIVTIFPDGSDRYMSKQIFNYKGV
>NZ_CP041727.1|WP_002461147.1|1652339_1652870_+|pentapeptide-repeat-containing-protein
MPSKQNLSLSVFTNEQFKKLKYSTTTFRNCMFDALEVNKSRFKKCDFSEGIFKNIKAISNSKFIYCDFTQSIFDDVHFYNTLFKYVEFTTTTFERSHFNNIEFQYCNFNHHYLHDVALQNVVYDKVYFENITLDLCQLDNVTFNHCTFKNVTINQSSLPDKLKVQLQHDGVHFKDN
>NZ_CP041727.1|WP_002479263.1|1652976_1654308_-|sodium-dependent-transporter
MMSKESQWKTSTGFILASAGSAIGLGAMWKFPYMAGIYGGGAFLSLFLLFTIFVGLPLLIMEFTVGKMGRTYTTQIYSKLTGKKWLNLIGWNGNLAVFVLFGFYSVIGGWIIIYIGHVILQMLSLEHNSLTQISFEGMISNPWITVVGQGIFIALTMVIVMLGVEGGLEKASKIMMPLLFIFLLIIVIKSLTLDGALEGVQYILQPRIQDISMQGVLFALGQSFFTLSLGTTGMITYASYAPKAMTIKSSALSIVVMNIMISVMAGLAIFPALHTFGYHPQEGPGLLFKVLPLVFSKMHFGIAFYFIFLILFLFAALTSSISLLELNVSNFTKNDNSKRKVVAMIASALVFIISIPATLSFSTLNNFKFLAGTIFDNMDFLVSNILMPLGALGTTLVVGQLLDKKLLKENFGKDKFKLFIPWYYLIKYVMPLVIILVFLVQLF
>NZ_CP041727.1|WP_002461144.1|1654449_1654704_-|hypothetical-protein
MKRTFLLIYTTTSGQTFKEFKSFDYGKDKETCHQRLIDEFDELAYLYLNTGNSVHYINVDHIESLEITEVTDGQTIAYGFEDYE

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Crispr_ID: NZ_CP041727_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041727_5

1804744-1805212

TypeIII

Consensus_repeat	Method
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	PILER-CR
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	CRISPRCasFinder
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	CRT

6 spacers

cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1

The CRISPR arrays of NZ_CP041727_5

>merge|NZ_CP041727|5|1804744-1805212|PILER-CR,CRISPRCasFinder,CRT
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAACTTCTGTATTTCTATTAACCAATTCATAAGTGTCATTAAATCAGAGAATACCCCGTATAAAAGGGGACGAGAACATATTTTACTATATGCTCATATCCGCCGTTTGTTTCTAATCAGAGAATACCCCGTATAAAAGGGGACGAGAACTTCATCATATCCTTTTATATAGTTTTTGTTTTGTTAATCAGAGAATACCCCGTATAAAAGGGGACGAGAACCCAAATAATACTATTAATTTATCTGTTAATGCTGTGGAATCAGAGAATACCCCGTATAAAAGGGGACGAGAACTGGTAAATCTTCTACACTGTCGACTGGGTCTTCTAAATCAGAGAATACCCCGTATAAAAGGGGACGAGAACTGTTCCAATTAGCTAAAGATGTTATGGACGGCAAGAAATCAGAGAATACCCCGTATAAAAGGGGACAAAAAG

>NZ_CP041727|5|1|1804744-1805140|PILER-CR
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	TTCTGTATTTCTATTAACCAATTCATAAGTGTCATTA
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	ATATTTTACTATATGCTCATATCCGCCGTTTGTTTCT
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	TTCATCATATCCTTTTATATAGTTTTTGTTTTGTT
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	CCAAATAATACTATTAATTTATCTGTTAATGCTGTGG
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	TGGTAAATCTTCTACACTGTCGACTGGGTCTTCTA
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC

>NZ_CP041727|5|5|1804744-1805212|CRISPRCasFinder
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	TTCTGTATTTCTATTAACCAATTCATAAGTGTCATTA
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	ATATTTTACTATATGCTCATATCCGCCGTTTGTTTCT
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	TTCATCATATCCTTTTATATAGTTTTTGTTTTGTT
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	CCAAATAATACTATTAATTTATCTGTTAATGCTGTGG
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	TGGTAAATCTTCTACACTGTCGACTGGGTCTTCTA
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	TGTTCCAATTAGCTAAAGATGTTATGGACGGCAAGA
AATCAGAGAATACCCCGTATAAAAGGGGACAAAAAG

>NZ_CP041727|5|1|1804744-1805212|CRT
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	TTCTGTATTTCTATTAACCAATTCATAAGTGTCATTA
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	ATATTTTACTATATGCTCATATCCGCCGTTTGTTTCT
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	TTCATCATATCCTTTTATATAGTTTTTGTTTTGTT
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	CCAAATAATACTATTAATTTATCTGTTAATGCTGTGG
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	TGGTAAATCTTCTACACTGTCGACTGGGTCTTCTA
AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	TGTTCCAATTAGCTAAAGATGTTATGGACGGCAAGA
AATCAGAGAATACCCCGTATAAAAGGGGACAAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041727.1\|WP_002479166.1\|1799503_1799929_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|187778
NZ_CP041727.1\|WP_002479148.1\|1820227_1820554_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002479149.1\|1818902_1820228_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238287
NZ_CP041727.1\|WP_002479152.1\|1816236_1817004_+\|tandem-type-lipoprotein	unknown	unknown	gnl\|CDD\|367972
NZ_CP041727.1\|WP_150861656.1\|1802698_1803808_+\|type-III-A-CRISPR-associated-protein-Csm6	csm6	cd09699_csm6_CAS-III-A	gnl\|CDD\|131720
NZ_CP041727.1\|WP_002479158.1\|1806111_1806738_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NZ_CP041727.1\|WP_002479169.1\|1796002_1796908_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP041727.1\|WP_002479167.1\|1797228_1799502_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP041727.1\|WP_002479160.1\|1803804_1804557_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP041727.1\|WP_012990658.1\|1806734_1813916_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NZ_CP041727.1\|WP_002479163.1\|1801497_1802508_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NZ_CP041727.1\|WP_002460943.1\|1820556_1820844_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002479153.1\|1815360_1816146_+\|tandem-type-lipoprotein	unknown	unknown	gnl\|CDD\|367972
NZ_CP041727.1\|WP_014533190.1\|1818120_1818906_+\|tandem-type-lipoprotein	unknown	unknown	gnl\|CDD\|367972
NZ_CP041727.1\|WP_014533183.1\|1794622_1795498_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213231
NZ_CP041727.1\|WP_002479159.1\|1805405_1805759_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002479164.1\|1800585_1801494_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NZ_CP041727.1\|WP_037553839.1\|1817073_1817859_+\|tandem-type-lipoprotein	unknown	unknown	gnl\|CDD\|367972
NZ_CP041727.1\|WP_002479168.1\|1796907_1797213_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09638_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|273699
NZ_CP041727.1\|WP_002479165.1\|1799930_1800575_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815

Protein	Function_ID	Function_description	E-value
NZ_CP041727.1\|WP_002479166.1\|1799503_1799929_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|187778	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-A.	2.41736e-19
NZ_CP041727.1\|WP_002479149.1\|1818902_1820228_+\|hypothetical-protein	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	0.00408836
NZ_CP041727.1\|WP_002479152.1\|1816236_1817004_+\|tandem-type-lipoprotein	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	1.10065e-133
NZ_CP041727.1\|WP_150861656.1\|1802698_1803808_+\|type-III-A-CRISPR-associated-protein-Csm6	gnl\|CDD\|131720	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6. Members of this family as found in CRISPR-associated (cas) gene regions in Streptococcus thermophilus CNRZ1066, Staphylococcus epidermidis RP62A, and Mycobacterium tuberculosis (strains CDC1551 and H37Rv), as part of Mtube-type CRISPR/Cas systems. CRISPR is a widespread form of direct repeat found in archaea and bacteria, with distinctive subtypes each of which has a characteristic sporadic distribution.	8.66733e-110
NZ_CP041727.1\|WP_002479158.1\|1806111_1806738_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	4.43336e-21
NZ_CP041727.1\|WP_002479169.1\|1796002_1796908_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.06694e-100
NZ_CP041727.1\|WP_002479167.1\|1797228_1799502_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_CP041727.1\|WP_002479160.1\|1803804_1804557_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	8.94533e-13
NZ_CP041727.1\|WP_012990658.1\|1806734_1813916_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP041727.1\|WP_002479163.1\|1801497_1802508_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	8.37294e-16
NZ_CP041727.1\|WP_002479153.1\|1815360_1816146_+\|tandem-type-lipoprotein	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	2.26294e-131
NZ_CP041727.1\|WP_014533190.1\|1818120_1818906_+\|tandem-type-lipoprotein	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	4.24977e-132
NZ_CP041727.1\|WP_002479165.1\|1799930_1800575_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.24262e-98
NZ_CP041727.1\|WP_014533183.1\|1794622_1795498_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213231	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	6.3434e-105
NZ_CP041727.1\|WP_002479164.1\|1800585_1801494_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	2.35132e-36
NZ_CP041727.1\|WP_002479168.1\|1796907_1797213_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|273699	TIGR01573, cas2, CRISPR-associated endonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. CRISPR systems protect against invasive nucleic acid sequences, including phage. Cas2 proteins have been characterized as either endoribonuclease (for ssRNA) or endodeoxyribonuclease (for dsDNA), depending on the system to which the Cas2 belongs. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes usually are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead of by this model (TIGR01573).	5.19185e-18
NZ_CP041727.1\|WP_037553839.1\|1817073_1817859_+\|tandem-type-lipoprotein	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	3.41052e-131

>NZ_CP041727.1|WP_002479160.1|1803804_1804557_+|CRISPR-associated-endoribonuclease-Cas6
MIYKITVQLNLPNNINLPYMGSILHGVLMDYLSNDIASSLHHNFAYSPLKQRVFYFEDKKIWEIVSMSEELFNELVNLFNKENKIYLKHYKSTVSIEKYSVEKISIQKLIDTFLHKRDLSRYIKINVSTPMSFKLNNQYMIFPNVKRFFRSIMIQFDAFFESHKLYDKETLEFLEQNVNIVNYKLKSVRFHMEKVKIPSFKGEIVFKINGPLPFLQLVYFLLAFGEFSGTGIKTSLGMGKYNIVDKNQDN
>NZ_CP041727.1|WP_150861656.1|1802698_1803808_+|type-III-A-CRISPR-associated-protein-Csm6
MVSKVSPQTSVEIKVENIEHEHDFDSYKDLFSYFIKGIRMSNPESEILLNVTSGTPQMESTLCLEYISNPNNAQCIQVSAPQPSNNTKRLYANPNNAFKDLEKVNQNEHLADNRCKSINILSFREVMVRSQVRGLIDNYDYEGALNLISAQKSFRNGKVLQKKLRNLTTQIKTHKIFSDLSERYSNEALKKSLFHYLLLKMRHDRLDVAETLIRVKSIAEYIIKYYIQSNWPSLILEENGKPKLNVKKNASFVYKYKLHLQKRIKKEDIINIDVSKNTLGLPAFIDILSLLQPKSKLLKEVRPVNDINGLRNSVAHNLDMLNLDSNKNYKKIELAVKAIQNMLITTFSEIEEEDFEYLTEKNKELKGLL
>NZ_CP041727.1|WP_002479163.1|1801497_1802508_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTIKTFDAIIQTIGPIHIGSGQVLKKQDYIYDFHKSKVHMINGNQLVKVLKRKNLLNMYQEFLRYPPKNPRENGLKNFLEAHKITQSEWKEFISYSESVNQGKKYGNIKPKPLNDLHLMIRDGQNKVYIPGSSIKGAIKTALVSKYDNENDKSVFSRIKISDSEPVDESNLAIYQKIDINKDEKPMPLYRECIDVNTQIKFKITIEDNQYSIEDIENCIQDFYKNYYNQWLSRFKNTRGGQKFILEGGMPEVKGQNILYLGGGVGFSSKTTHYQTKSHEQAKHDTFEILRKRFRGTYGKMKRIPQNVPVALKGTLNYSKNQSYQQGMCQITFKKND
>NZ_CP041727.1|WP_002479164.1|1800585_1801494_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MITKIFKLSFKTPVHFGKKRLSDGEMTIKADTLFSALYTETLNLGKQTNWLMNDLIISDTFPYESELYYLPKPLIKIESNSEGNHKDFKKLKYVPVYNYNDYIKGQLSEEDVRDLNDIFRVGQFSLQTKVSLKAQEQSPNEDSEPYSVGTFSFEKDAGLYFIAKGSERTIQRLNEVMYALQFSGIGGKRSAGYGRFEYTCVSNENISNLLNQDGDNFILLSTSMAKREELEASLNKARYILSKRTGFIQSTTYSDRLVKKNDFYSFSVGSVFKTIFKGDIFNVGNQGQHPVYRYAKPLWMEV
>NZ_CP041727.1|WP_002479165.1|1799930_1800575_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MYSKIKVTGTIEIITGLHIGGSGEISMIGAIDSPVVRDLLTKLPIIPGSSIKGKMRSLLARDFGLKLNQDNHNQDDDRVLRLFGSSEKGNIQRARLQISDAFYSDKTKQIFTDNDISFTETKFENTINRLTAVANPRQIERVTRGAEFDFTFIYNVIDETQVEDDFNNIKKAILLLENDYLGGGGTRGNGRIEFKDINIETVVGEYDSTNIKIK
>NZ_CP041727.1|WP_002479166.1|1799503_1799929_+|type-III-A-CRISPR-associated-protein-Csm2
MILAKTKSGKIIDLNFAHEVVKNNLKMEKDKRGKEELKLFSGLTTSKLRNLMEQVNRLYTMIFNSTEEKLSRNFIDELEYLKIKFYYEAGREKSVDEFLKKTLMFPIIDKVIQKESKKFFLDYCKYFEALVAYSKYYQKED
>NZ_CP041727.1|WP_002479167.1|1797228_1799502_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MNKKTVLMYGSLLHDIGKIIYRSNDQPYAKGTHSELGYQFLSQFSAFKNKELLDSLAYHHYKELSKANLSSDNTAYITYIADNIASGVDRRDVIEEGDSEYEKQTFNFDKFTPLYSIFNIVNSEKYKYTEGKYRFSKENNIEYPKNEDVRYTSGNYTNLIEDMRYDLEHKIKVTEKNFPSLLQWTESLWQFIPSSTNKNQLIDISLYDHSRITCAIASCIFDYLYENSIDNYKEELFLKYEKTKEFYQKQAFLLLSMDMSGIQEFIYNISGSKALKSLRSRSFYLELMLEVIVDKLLERLKLTRANLLYTGGGHAYLLIANTDKTKTIIKDFISELKQWFLSEFTTDLSLSIAYEACSGDDLMNSNGNYKSIWRNVSNKLSDSKAHKYSYEDILLLNSHSSFGDRECKECLRSDIEINDDGLCSICEGIISISNDLRDKAFFVLSDNGKLKMPFNKYISVISYQEAENLVNRDDSVRIYSKNKPFVGEGIATNLWMCDYDYASNDKSLRAKGIGSYTERKEGIKRLGVVRADIDNLGATFISGIPESYNSISRTATLSRQLSLFFKYELNNLLENYLITSIYSGGDDLFLIGAWDDIVEASVYVNEKFNEFTLGKLTMSAGVGMFSGKYPVSKMAFETGLLEESAKKGEKNQIALWVEEKVYNWDKFKHNILEDKLVVLQQGFLKSDEHGKAFIYKMLNLLRNNEVINIARLAYLLSRSEMSDEFSSKIFYWAQNEEDKEQLITALEYYVYQIREAN
>NZ_CP041727.1|WP_002479168.1|1796907_1797213_+|CRISPR-associated-endonuclease-Cas2
MFLLISFDLPRDTKYERKIANKYRLRLLELGFSMKQFSLYERYTSDTQKKDKILSILKEEMPNTGKITMYVLPDEVNNKQITILGKEAKIINYKEPKLIFI
>NZ_CP041727.1|WP_002479169.1|1796002_1796908_+|type-II-CRISPR-associated-endonuclease-Cas1
MKNIIYVENHYFVTAKDNSIKFRNIIDKTEKFYFFSDIEAIIFDHYRSYFSHKLVIKCMQNNIAILFCDNKHSPMTQLLSEYGMSNRIQRIQTQFRFSGRSKERVWKKIVVGKIINQARCVENNIDKSKSIVLKELAKEVKPGDNNNREAIAAKIYFRDLYGPQFKRGRYNDIINSALNYGYSIIRSFIKRELAIHGFEMSLGIKHHSTENPFNLADDVIEVFRPFVDNMVYNIVMKDGVKVFDTKEKKVLLNVLFEKCIIDKKIVRLLDSIKIMIDSLIRCYKENTATYLLIPKMIEVGN
>NZ_CP041727.1|WP_014533183.1|1794622_1795498_-|ABC-transporter-ATP-binding-protein
MNNIVIKDVNKTYDGKTYALKNINLEINNGMFGILGRNGSGKSTLMNMLSTILQQSSGTIEINNISLTQTKQIRKMIGYLPQDFDFYPNMKVKETLHYLGILSGIPKANLKINVAASLEKVNLVEHQNKKVKSLSGGMKKRLGIAQAIIHNPQVLIVDEPTAGLDPEERVRLCHLLSNLAKDKIVIISTHIVSDIESTCENIAILDKGVIAYKGSIKNLIELSDNKVYEITISPSKLNQLKKNNIFITKIQEYEHLLKVRFVSESNLEGTRKVKQDFEDAYMYFLKMNQGG
>NZ_CP041727.1|WP_002479159.1|1805405_1805759_+|hypothetical-protein
MEEVLDLIINLVKLFIIVPYWLISVGVTAFFYFKLVVFIRNTFKAFFDKYFYGEDSDSIPYAVGPYIMIITAMLIGLGIVMVIVLFFNALLGQNLYTLLFIVGVILLIIKFKRGYKN
>NZ_CP041727.1|WP_002479158.1|1806111_1806738_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MKLFITQMNHTYKDIAHWMSQSHRQLKKPERLTYRFSKDKWMHRIGDLLIQYSIEHTHGLMPSQWSYDIQPNGHVKIASPIDIYVNLSYSFPYIICAIDHLPIGADIEEIKGMDDLNIAKQFSTNEFNQIQTLEDFYTIWTKKESYSKMIGEGLIRGLAYYDVTKPLYYQHHTIKFKQHLIDNCIIQLCHISSNHPFEIVDVPLKQLF
>NZ_CP041727.1|WP_012990658.1|1806734_1813916_-|non-ribosomal-peptide-synthetase
MNKQLLNFQKYFYLKYLKQSSSTHRMTYWVKLDTRIDCHQLVYALLNVVQHQPVLRSQFNIDDSDDLCVSIREFFPFIELKAFDDYSKNIDIESFFQQKLNSYYLNQLPQFNFTIYQFLDEAYLLLDFHSMIFNDNQLQIFLSELNKAYKHSLNQHAGISQFYMTVQKINEKACNPNAPKDFNQFKVLHADNENYAYMPVKNVSDKKEMRYVRTQLSSFDIHRLAVSTYLAHHFMSQSNEVALNIHFPVANKQSELLMVPNSNVSPVCLYIDQHASVDSLLTAWTSAIHSLQNHGASFITEANADVMELESMFHVTPVVADFELHQVSHEVHRLYNNKSSLANIEIYPLANGGFDLVYDANAYDDLTIQTLRRLITTIYMQSVNQPTMLVQEIQLNDQTDLQLYERINSHSMTQLNGNDAYQTVMSRFEYQVNQHPDAIALQFEQQSMTYRQLNQQANYIAHLLRTTYGIQPNDTVALIMERSMEMIVAILGILKSGAGYLPIDPDYPQERTHYILKDAMPKAIITYHITLQSDLPLIKMEEINWEECTYIDNLPHINTPEDTAYVIYTSGTTGKPKGTVIAHRGIDRLVHQPNYVELNDDTVILLSGTIAFDAATFEIYGALLNGGRLIITSKDTLLDSKQLGQTIADKQVNTMWLTSSLFNQIASERIEVLESLKYLLIGGEVLNAKWVNLLNSRARHPQIINGYGPTENTTFTTTYAIPPKLPARIPIGSPINGTTVYVIQGQRLCGVGVPGELCIGGSGLAKGYLNQPEQTQQSFVKSPLNGEAIYKSGDLVRLQEDGNIDYISRIDKQVKIRGFRIELSEIEKAIEAIRDINKAVVVVHEHEQDRDKQIVAYYEASQPQSTSTLKKLLSHTLPNYMIPVHFMKIDKIPITINGKLDTRALPDIDMIDESNYVAPRNELERVLCRIFEEILHVDRVGIKDNFFELGGHSLRATLVVNRIEEQLQKRLKVGDIMKSPTVKALSQQLKETQNEHYEVIPKASEDTQYELSAVQKSMYLLWSVNPKDTVYNIPFLWRLTSELNVNQLQRSLSQLIQRHEILRTQYIIDHNEVKQRIAKDVIPDFEEVTTDLTDEQDIIHAYTHPFNLEKPSQIRMKYIHSPEHHYLFIDTHHSINDGMSNTILLADLNALYQNKSLPQLSLQYRDYSEWMAQRDLSTQRHYWLEQFEDGVPVLNMPTDYPRPSIKTTHGHMMTFHYDQTFKSQLKSYVEQHQITDFMFFASAIMVLLHKYTRQDDLVIGSVISSRTHRDTENMLGMFANTLVYRGQPSNDKPWEQFISEMKETSLAAYEQQEYPFESLVNDLVGDRDPSRNPLFDVMLVLQNNETNHANFGHSRLTHIPPQSTTAKFDLSFIIEEDYNDYTVNIEYNTDLYSKATIQLMAQQLENIFKYVITTSNPKIKEIQEDPHILDWINTNVNCYTRDDTTHETVQQRFNRVVKQHSEDVALRMNGQSMTYQTLDAYANQLAYELTVNGVQSGDRIALLTERSFEMIISMVAAIKVGASYVPIDVAHPDKRIDYMIKDAQASAVITYGKDIHMNIPTIALETLELTNNNKRPFSEYAGSLEDEIYCIYTSGTTGMPKGVSIQQSNILNLVNAWTDRLELSEHETIIQYSNYVFDASAMDIYSSLLNGHTLVIANKNERTNTELLEQLITKEAITVASIPLQVLNVMHQFYIPKIITGGATSTPSFVQHISKHCDTYYNAYGPSESTVVTTTWSHAKGDPIPSTIPIGQPLANIQVYIVSEMQLCGIGIAGELCIAGDSLAAGYLNQPELNAQAFIDNPFGTGKLYRSGDLARFTPDGNIEFLGRIDKQVKVNGYRIELEEIENVINALDGVDDSVVIIRQQGGHDLLHAYYVGNHDIASHLLKQLTQYLPKYMIPNTFTAIDEIPLTSNDKVDESKLPNPEMHHHQFEPPRNDTEQIFASIMAEILDISEIGIDDDFFKLGGSSLDTMVLISKLKRKHIHLTMQDIYQYKTIRHLSAHLEQQSDESCVTLPDHLPQLQSLIKQRYQMRSKPMIVRHLGHVLLTGATGFLGAYLINELTGYTDKITCVVRGQNKKDARQLVEENLSCYFDPAHVADLMIRVEVVLGEFSNLDILNITSHIDTIIHAGARTDHFGDDEAFINVNVKSTEDLLTLAETHKARFIYISTISVGTVFDSHAEDYTFSEQDLYKGQLFTSPYTKSKFYSEIKVLEAIEAGLDAQIMRLGNLTSAYTGKLNMKNLTTNRFSIVMNDLLKLPFIGDSFSQTEIEFSFIDITARDIVTLAISNATPIIYHVYSPHVLTMKNVLEETKDTDLPLINDEEFDKALHELNMHEVIGLNSQASNQITGVTQSSMTQNLLRDLDEVWPKVTQHWLYQWRELLNEKFECKEYHR
>NZ_CP041727.1|WP_002479153.1|1815360_1816146_+|tandem-type-lipoprotein
MRQSRKLKLGICLILLIILIGSCIILTKTNSRNAQIKKTFNQTLSLYPTKNLEDFYDKEGFRDQEFDKGDKGTWIIHSEMVIEPKGRNMESRGMVLHVNRNTRTTKGYFLISEITEDKKGYVHNKDKKYPVKMEHNKIIPIKPIPNDKLKKEIENFKFFVQYGNFKDFKDYKNGDISYNPNVPSYSAKYLLNNDDYNVQQLRKRYNIPTKQAPELKLKGDGDLKGSSIGSKDLEFTFVENKKENIFFTDSVQFTPSEVNKS
>NZ_CP041727.1|WP_002479152.1|1816236_1817004_+|tandem-type-lipoprotein
MEHSKKLKLCASLFILVIFVGGCGSFNKEAQIKKSFNKTLSVYPTKNLEDFYDKEGFRDQEFDKDDKGTWIIYSEMVIEPKGKNMESRGMVLYINRNTRTTKGNFIVNEITEDSKGRPTNNKKKYPVKMEHNRIIPTKPIPNDKLKKEIENFKFFVQYGNFKDFKDYKNGDISYNPNVPSYSAKYQLNNDDYNVKQLRKRYNIPTKQAPELKLQGDGDLKGSSIGSKDLEFTFVENQEENIFFTDSIDFTPTEHS
>NZ_CP041727.1|WP_037553839.1|1817073_1817859_+|tandem-type-lipoprotein
MRQSRQLKLGICLILLIILIGGCVILTKINNRNAQIKESFNKTLSLYPTKNLEDFYDKEGFRDQEFEKGDKGTWIVNSEMVIGPKGKNMESRGMVLYINRNTRTTKGYYFISETTYDNNGRPKDDEKRYPVKMAHNKIIPTKRIPDDKLKKEIENFKFFVQYGNFKDFKDYKNGDISYNPNVPSYSAKYLLSNDDYNVQQLKKRYNIPTKQAPELKLKGDGDLKGSSIGSKDLEFTFVENKKENIFFTDSVQFTPSKDNKS
>NZ_CP041727.1|WP_014533190.1|1818120_1818906_+|tandem-type-lipoprotein
MRQSRKLKLGICLILLIILIGGCIILTKTNSRNAQIKKTFNQTLRLYPTKNLEDFYDKEGFRDQEFEKGDKGTWIIYSKMIIEPKGRNMESRGMVLHINRNTRTTRGNFIVNEITEDSKGRPLNNKKKYPVKMEHNRIIPTKPIHDDKLKKEIENFKFFVQYGSFKDFKDYKNGDISYNPNVPSYSAKYQLSNDDYNVQQLRKRYNIPTKQAPELKLKGDGDLKGSSIGSKDLEFTFVENQEENIYFTDTVQFTPSEVDKT
>NZ_CP041727.1|WP_002479149.1|1818902_1820228_+|hypothetical-protein
MNQTEYKIKPGNIKGNSEETSTVSKISYEIENANNSGLKRDKINEQIEGLKEYDKFPGNLEYVDSYTDPKTGTTTSAFLNKETGKVTLGMTGTNLHKGAMLKQAFGVASPQDYRDVYETLNDIRADINIGLHSVTDKDPHYKNTQDFIKGIKKDYDIDTITGHSLGGRDAIILGTSNDIKHIVVYNPAPLAVKDVSILYDDGEELKKMIEKYDGHIVRFVSNQDILDAGVRDLMYETAGEKIVIKNGEGHSMDGFLIKGTQAKILAELKRVKGYQDANNKSFKSVRKQTRRRLDKVETLRANWIQTNGGALSSSQQQLLESLTALTIAQGLSQLVDEESQHLKKMYQSMAHKFGENWKKAQEAGNEIAEKLTFAEVIDELRAGGAYESKLETDPQRKIDNKLKKLNDVSKNCDDYIAKIKQSIHAIVEKDKALASQIGGIM
>NZ_CP041727.1|WP_002479148.1|1820227_1820554_+|hypothetical-protein
MFTEYKKLSDLENAFDVERKKLNDELNQLYELKHQTRRKCEQMYDHFLYLKHKLNYSEAATIKMTRIIEAFDGEMNQRIRHQEMKLEDDKDTLRRDYLKQSARIEGDE
>NZ_CP041727.1|WP_002460943.1|1820556_1820844_+|hypothetical-protein
MIRGSNAIPDLAVMGGMMEKEQIRTVIAPEHDRMHHDHQNKLKSDEKILLDQMVSHFKKFEGEFKNAAQGDWVKSAMSELNDISDDLKHIQDIEV

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Crispr_ID: NZ_CP041727_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041727_6

2144026-2144109

Orphan

Consensus_repeat	Method
AACCCCAACTTGCTTTGCTTGGCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041727_6

>merge|NZ_CP041727|6|2144026-2144109|CRISPRCasFinder
AACCCCAACTTGCTTTGCTTGGCGAATTTCTGCTCGAAATTCTCTTTGTTGGGGCCCCAACCCCAACTTGCTTTGCTTAGCGAA

>NZ_CP041727|6|6|2144026-2144109|CRISPRCasFinder
AACCCCAACTTGCTTTGCTTGGCGAA	TTTCTGCTCGAAATTCTCTTTGTTGGGGCCCC
AACCCCAACTTGCTTTGCTTAGCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041727.1\|WP_002478549.1\|2157964_2158780_+\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|235419
NZ_CP041727.1\|WP_002460576.1\|2152149_2152419_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369110
NZ_CP041727.1\|WP_002478544.1\|2148878_2150585_+\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_CP041727.1\|WP_002478542.1\|2146368_2146929_-\|GbsR/MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224427
NZ_CP041727.1\|WP_002478536.1\|2137155_2138376_+\|ArgE/DapE-family-deacylase	unknown	unknown	gnl\|CDD\|181490
NZ_CP041727.1\|WP_002460596.1\|2134134_2135034_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP041727.1\|WP_002478545.1\|2150832_2152011_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941
NZ_CP041727.1\|WP_002478534.1\|2135056_2136235_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235227
NZ_CP041727.1\|WP_150861650.1\|2141582_2142119_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|379137
NZ_CP041727.1\|WP_002478548.1\|2155335_2157960_+\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NZ_CP041727.1\|WP_002478532.1\|2132705_2133485_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|235711
NZ_CP041727.1\|WP_002478543.1\|2147296_2148787_+\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143437
NZ_CP041727.1\|WP_002478541.1\|2144690_2146316_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|224211
NZ_CP041727.1\|WP_002478540.1\|2142475_2143768_+\|anaerobic-C4-dicarboxylate-transporter	unknown	unknown	gnl\|CDD\|236503
NZ_CP041727.1\|WP_002478535.1\|2136251_2136851_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP041727.1\|WP_002478538.1\|2139733_2141581_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
NZ_CP041727.1\|WP_002478546.1\|2152408_2152858_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225209
NZ_CP041727.1\|WP_002478547.1\|2153494_2155087_+\|acyl--CoA-ligase	unknown	unknown	gnl\|CDD\|341276
NZ_CP041727.1\|WP_002478533.1\|2133505_2134117_+\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|180667
NZ_CP041727.1\|WP_002478537.1\|2138764_2139535_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451

Protein	Function_ID	Function_description	E-value
NZ_CP041727.1\|WP_002478549.1\|2157964_2158780_+\|kinase/pyrophosphorylase	gnl\|CDD\|235419	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator.	2.33637e-122
NZ_CP041727.1\|WP_002460576.1\|2152149_2152419_+\|hypothetical-protein	gnl\|CDD\|369110	pfam06855, YozE_SAM_like, YozE SAM-like fold. YozE-like is a family of Firmicute proteins that carries a four-helix motif similar to sterile alpha motif (SAM) domains. The family is suggested to fall into two subfamilies, possibly with differing functions based on the different surface charges on the three structural representatives, YozE MW0776 and MW1311. What this function is is not yet known although it is likely to involve binding to DNA.	2.54746e-10
NZ_CP041727.1\|WP_002478544.1\|2148878_2150585_+\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_CP041727.1\|WP_002478542.1\|2146368_2146929_-\|GbsR/MarR-family-transcriptional-regulator	gnl\|CDD\|224427	COG1510, COG1510, Predicted transcriptional regulators [Transcription].	2.16217e-62
NZ_CP041727.1\|WP_002478536.1\|2137155_2138376_+\|ArgE/DapE-family-deacylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP041727.1\|WP_002460596.1\|2134134_2135034_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.21611e-29
NZ_CP041727.1\|WP_002478545.1\|2150832_2152011_+\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	0
NZ_CP041727.1\|WP_002478534.1\|2135056_2136235_+\|sulfate-adenylyltransferase	gnl\|CDD\|235227	PRK04149, sat, sulfate adenylyltransferase; Reviewed.	0
NZ_CP041727.1\|WP_150861650.1\|2141582_2142119_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|379137	pfam13353, Fer4_12, 4Fe-4S single cluster domain. This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.	8.58102e-57
NZ_CP041727.1\|WP_002478548.1\|2155335_2157960_+\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NZ_CP041727.1\|WP_002478532.1\|2132705_2133485_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|235711	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase.	5.78933e-124
NZ_CP041727.1\|WP_002478543.1\|2147296_2148787_+\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|143437	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.	0
NZ_CP041727.1\|WP_002478541.1\|2144690_2146316_+\|BCCT-family-transporter	gnl\|CDD\|224211	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane].	0
NZ_CP041727.1\|WP_002478540.1\|2142475_2143768_+\|anaerobic-C4-dicarboxylate-transporter	gnl\|CDD\|236503	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed.	5.28088e-156
NZ_CP041727.1\|WP_002478535.1\|2136251_2136851_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.60037e-138
NZ_CP041727.1\|WP_002478538.1\|2139733_2141581_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NZ_CP041727.1\|WP_002478546.1\|2152408_2152858_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	1.02761e-21
NZ_CP041727.1\|WP_002478547.1\|2153494_2155087_+\|acyl--CoA-ligase	gnl\|CDD\|341276	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes.	0
NZ_CP041727.1\|WP_002478533.1\|2133505_2134117_+\|NAD(P)-binding-protein	gnl\|CDD\|180667	PRK06718, PRK06718, NAD(P)-binding protein.	4.14708e-121
NZ_CP041727.1\|WP_002478537.1\|2138764_2139535_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.1351e-25

>NZ_CP041727.1|WP_002478540.1|2142475_2143768_+|anaerobic-C4-dicarboxylate-transporter
MILFAIEIGIMIAAILLGLRTAGALGCGIFAIVAQLIMIFVFQLPPGSAPVTAVLIILSIGIAGGTLQSTGGIDYLVYLASKVIEKYPKSIIFISPIIVFIFVFGIGTANIALSLEPIIAKTAMKAGIQPRRPLIASVLTANLALLCSPAAAATAYIISVLAGYDISMGKYLSVVFPTAILTMLLLSVFCTLAGRKKEQAQRFELKDLEVKVPTTFPSKVKLGVASFLLCVVGILTFGIFPQLMPSFNIDGKSVEVTMTEIVQFFMYLAAAINLLLNKIDTTDILSSHITQSAIGALFAVLGPGWLGATVFNAPQNLKILKEDVGAVIQVAPWLVILLVSIVAIVVISQTATASIMFPIVLSIGIPPMFFVAMVQTINVNFVIPAQPTLLFAVDLDETKRTKVTSFIIPGFFMITVSVLIGFSIKAILGY
>NZ_CP041727.1|WP_150861650.1|2141582_2142119_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MSVLDVTEGRGYISKIEQHSFVDGEGVRVSMYVSGCPFLCEGCYNVAAQRFTYGEPFNDETLEAILHYCEPDYIAGLSILGGEPFCNVDITLKVARAFRQKFGHRKSLWVWTGFLYEYLSHDAGIRHQLLSLIDVLVDGPFIQALFQPNLAYKGSLNQRVINVPASLKKGTPVIYVED
>NZ_CP041727.1|WP_002478538.1|2139733_2141581_+|anaerobic-ribonucleoside-triphosphate-reductase
MKQLEAELQGLITKDPAIVNENANKDSNTFSTMRDLTAGVVSKSYALQHLLPKRVAQAHKNGDIHFHDLDYHPFQPLTNCCLIDATSMLQHGFEIGNANVTTPKSIQTASAQLVQIIANVSSSQYGGCTVDRVDELLSTYARHNEAHHRKVAETFVRADAIEDYVDQQVTKDVNDAIESLEYEINTLYTSNGQTPFVTLGFGLGTDKLSRKIQQAILNTRIKGLGKNRITAIFPKLVFTIKKGVNFSEEDPNYDVKQLALKCSTKRMYPDVLNYDTLVDILGDFKAPMGCRSFLPAWRDAQGQFENSGRCNLGVVTLNIPRIAIESQGDKLTFWRLFHERMDILHEALLYRIERVAQAVPENAPILYKSGAFKYKLQEGEDVTDLFKHRRATISMGYIGLYEAATVFYGPNWETNPDAKAFTLDILKEMKDYQLEWTEETDVWFSIYSTPSESLTDRFCRLDYERFGSIPDITDKGYYQNSFHYDVRKDITPFEKIDFEKDYPYYASGGFIHYCEYPKLNHNLKALEAVWDYAYDKVGYLGTNIPIDRCYECGYEGDFETTAQGYTCPHCGNHDPKTVDVVKRTCGYLGNPVQRPVIEGRQKEICARVKHMKEPK
>NZ_CP041727.1|WP_002478537.1|2138764_2139535_+|CHAP-domain-containing-protein
MKKIATATIATAGFATIALAGGHDAHAAEQNNNGYNPNDPYSYSYSYTIDQQGNYHYTWQGNWSPNQAQQGQYYSYNYTNTAGTQNYNYNTQYSQNYQPQTQAYHANNGGGLGASYSTSDRNVKVTTTQAPSSHASNTSGGSAFSGKSGSSSNLYTAGQCTYYVFDKVGGKIGSTWGNASNWASAAASEGYNVSNSPKQGAVMQTSQGAYGHVAYVEKVNSDGSVKVSEMNYNGGPGVVSTRTISASQASSYNYIS
>NZ_CP041727.1|WP_002478536.1|2137155_2138376_+|ArgE/DapE-family-deacylase
MTVLSEQERIDILADIVNINTENNNEIEVCYYLKELLQRYDIESKIIEIEGKRSNLVAEIGSGRPVIGISGHMDVVDAGDEAQWMYPPFELHEQDGKLYGRGTSDMKGGLAALVIAMIEIKASNLLQQGTIRLLATAAEEKEMSGSMLFRDKGYVDDLDGLIIGEPSDHYINYANKGSMGIKIKAKGVAAHSSLPNLGHNAIDDIIRYIQKIKEKYEDIKNNDNKHSLDVSPLIKDYFGDKFNDKELRKLENVAEGLVIVNSIIYGGEQFNTVPESAYAEFNIRTIPEYDNEAIIQLFEETLYEVDQAQLSMEITTNHAPVYSNKDNLLVKSFTEYKDDLTVTALVGATDASELLKGIDNVDLTIIGPGFMRQAHRANEYIDKQHYLDFIDLYQHVIVDYLNKKSN
>NZ_CP041727.1|WP_002478535.1|2136251_2136851_+|adenylyl-sulfate-kinase
MSQSSHITWHDSEVTKADRQKQNGHKSAVIWFTGLSGSGKSTVSVALEQALFELGKHAYRLDGDNVRHGLNKNLGFSPEDRKENIRRIGEVSKLLVDAGTIAITAFISPYRVDRDDVRNILEDGEFIEVYTQCSVEECEKRDPKGLYAKARSGEIKEFTGINAPYEAPYHPEITINTEQQSVEQAVAHILNYLTDNKYL
>NZ_CP041727.1|WP_002478534.1|2135056_2136235_+|sulfate-adenylyltransferase
MSVSKDILHYTIKPHGGVLINRVVEGIERTQLSQAAQSYKAITLNPWAISDLELIAIGGFSPLTGFMGQEDYNQVIEKTHLTDGSVWSIPITLPVTEDVASKLEIGDHIALYGEDGALYGTLKLTEKYTYDKKREAQLVYGTTDVKHPGVKKVYDKGNVYLAGPIQLLKRPQHNKFADYHLDPHETRQLFHDLGWKTVVGFQTRNPVHRAHEYIQKSALEIVDGLLLNPLVGETKADDIPADVRMESYETILKHYYPKNRARLVIYPAAMRYAGPKEAVLHAIVRKNYGCTHFIVGRDHAGVGDYYGTYEAQQFISQFEDELDIQILKFEHAFYCEACGNMATAKTCPHDATQHVHLSGTKVREKLRNGEALPTKFSRPEVAEVLIKGLQQH
>NZ_CP041727.1|WP_002460596.1|2134134_2135034_+|sulfite-exporter-TauE/SafE-family-protein
MKKLLIFALAGFLAQLVDGSLGMGFGASSSSILLTYGITPAIVSATVHFSEIATTAASGTSHWKFDNVHRSTMLKLAIPGAIFGFLGAAFLTHIHSSVIKPYIAIFLLAMGFYILYQFLFRRQHETHEHVGQLSGWKLIPQGAIAGLLDAIGGGGWGPVNTPILLSSKKIQPRYAIGTVSASEFFVTLATSLSFILFLGITQINWWLVVALSIGGMAAAPISAYLTKILPINILAICVGGLIIFTNSNALLSYFVDNSTIINVIRFAIICSILVLIIFVAIRNRLLSFSYKKNRVNKYN
>NZ_CP041727.1|WP_002478533.1|2133505_2134117_+|NAD(P)-binding-protein
MNMPLMVDLAGQRIVIVGGGQVAARRASNFIDYCQDIHIISPQVHSSLEDLINAGQITWHQKEFDAADIAGAFLVVAATNNKAVNQQVKALVPPGCLFNNAEDATSGNVTIPNILKRGKLTLSVATQGASPKLGIQIIEQLSHTYDERYEQYVEFLYQCRQTLKRINIEPSYRQALLAKIVSDDYLDLDKQQAFLRWLQAQAE
>NZ_CP041727.1|WP_002478532.1|2132705_2133485_+|uroporphyrinogen-III-C-methyltransferase
MGKVYLVGAGSGDPELITVKGLKAIKQADVILYDRLVNRELLDYATAGTKLFYCGKDPNRQSLPQSETNKMLVSLAKKGHTVTRLKGGDPFVFGRGGEEAEILAQHHIAFEIIPGITAGIAAPAYAGIPVTHRDFSSSVAFVTAVNKPGMTKAAYWEHLAHGPETLCIYMGVKRLSEICGLLIKYGKPIDTPVALIHLGTTAYQQTVTGTLSTITEVAKNIKNPAMIVIGQVVQMHDKIQWFTEQTEQMRMDYSQVNSK
>NZ_CP041727.1|WP_002478541.1|2144690_2146316_+|BCCT-family-transporter
MKKEKIMDWPTFIGTVVILLLAVIPMMAFPSASEKVITDINSAISNSIGSLYLFIGLAILCFVLYIAFGKYGNVTLGKASDKPEFSNFSWASMLFCAGIGSDILYWGVIEWAYYYQVPPNGAKPMSDQALTFATQYGMFHWGPIAWAIYVLPALPIGYLVFVKKQPIYKISQACRPVLKGQTDKFLGKLVDVLFIFGLLGGAATSLALGVPMISAGVEKLTGLDGQNMVLRSIILFTITVIFAISSYTGLKKGIQKLSDVNVWLSFLLLGFVFIVGPTIFIMETTITGFGNMLRDFFHMATWMEPFGGIKGRKETNFPQDWTIFYWSWWLVYAPFIGLFIARISKGRRLKEVILGTIVYGTLGCVLFFGIFGNYAVYLQISEQFNVIQYLNSHGTEATIIEVMHQLPFPTTVIVLFLLSAFLFLATTFDSGSYILAAATQKKVLGEPLKANRLFWAFALCLLPFSLMLVGGERALEVLKTASILASVPLIVIFICMMVSFIITLSKDRIKLETRADKLKEVERRSLRIVQVRENNDEDDNL
>NZ_CP041727.1|WP_002478542.1|2146368_2146929_-|GbsR/MarR-family-transcriptional-regulator
MVHSQSNEEKLEAAKDLVINSIGQTMDLYGTNRSVGNLFGTMVFEGSMTLDEMREHLQMSKPSMSAGVKKLQEFDLVKQQFTRGSRKQHFIAEKDFFTFFRNFFTKKWEREVDTNMAAIIEAEKIITSVLNDEAIDDEIKQDALNIEQQLKHTKIYCQWLSNLTTALETGEIFDYFPIPNSQENNN
>NZ_CP041727.1|WP_002478543.1|2147296_2148787_+|betaine-aldehyde-dehydrogenase
MKLVEKLSQRQYIDGKWVESSNKNTREIINPYNQEVVFTVTEGTAEDAEQAILAARRAFEDGEWSLETSEVRGKKVRAIADKITEHRDELAQLETLDTGKTLGESYADMDDIANVFNYFAGLADKDGGEIINTPIPNTESKVVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGVINLILSSGEEVGDTLSGHKEVDLVSFTGGIETGKHIMKNAANNVTNIALELGGKNPNIIFADADFDLAVDQALNGGYFHAGQVCSAGSRILVHNDIKGDFEKALIDRVGKIKLGNGFDDDTEMGPVISTEHRDKIESYMEIAKKEGATIAIGGKRPDREDLQNGLFFEPTVITNCDTSMRIVQEEVFGPVVTIEGFDSEEEVIELANDSIYGLAGAVFTKDLGKAQRVANKLKLGTVWINDFHPYFAQAPWGGFKQSGIGRELGKEGLEEYLISKHILTNTKPEPINFFSK
>NZ_CP041727.1|WP_002478544.1|2148878_2150585_+|choline-dehydrogenase
MSENKSYDYVIIGGGSAGSVLGARLSEDKDKNVLVLEAGRSDYPWDLFIQMPAALMFPSGNPFYDWRYQTEEEPHMGRKVDHARGKVLGGSSSINGMIYQRGNPLDYEGWAEPEGMESWDFAHCLPYFKKLEKTFGAAPHDQFRGHQGPIKLKRGPATNPLFKSFFNAGVEAGYHKTEDVNGFRQEGFGPFDSQVHHGRRMSASRAYLRPAMKRKNLTVKTRAFVTELHFEGNKATGVTFKRNGKNHTVNAGEVILSGGAFNTPQLLQLSGIGDADFLKSKGIEPRVHLPGVGENFEDHLEVYIQHECKEPVSLQPSLDVKRMPWIGLQWIFARKGAAASNHFEGGAFVRSNDQVAYPNLMFHFLPIAVRYDGQKAPVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIVFNYLSTKEDEQEWVEAIRVARNILSQKAMDSFNGGEISPGPSVQTDEEILDWVRKDGETALHPSCSAKMGPATDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGKKPLEPQYVDYYIHGKHDPNDGAMEHNPYYPY
>NZ_CP041727.1|WP_002478545.1|2150832_2152011_+|amidohydrolase
MGETLVERLKAKEQRMIDIRRYLHEHPELSFHETETPKYIAEFYKDKACDVQTNVGPNGVKVTIDSGKPGKTIAIRADFDALPIQEDTGLSYASQNEGVMHACGHDAHTAYMLVLAETLIEMKDQFSGKVVVIHQPAEEMPPGGAKGMIEDGVLEGVDHVLGIHVMTNMTSGKIYYHEGNTQTGRAYFKLTIHGEGGHGSSPHTAKDAIVAGANFVTTAQNVVSRRLSPFETGVVTIGSFDGKGQFNVIKDTVEIEGDVRALTDATRDTIKYELERIVQGIATSFDVQYDFEFQPDYPALYNDPQFTSYIVETLRQAQLPDVIGVEECEPQPPSEDFAYYAQALPSTFLYSGAAPQQGHAYPHHHPKFNIDESSMLVAAEAVGTIVLDYLQG
>NZ_CP041727.1|WP_002460576.1|2152149_2152419_+|hypothetical-protein
MTFYDYMQNFVGDQTPLGELAHYLNKDCQFPKHEKTTDNILSYFIDEIELDDEHLETVKRSLSLYEQQTVHFSLVDHIKTEPKENVNED
>NZ_CP041727.1|WP_002478546.1|2152408_2152858_+|antibiotic-biosynthesis-monooxygenase
MKINEKAPYYALEATSPQTMRIYKNHQHFEYMILESINELIDNGYCMLNHLYVNKGQEGAFEQKFLQRQQHLASVPGFRALRFLRPNEQGQHYVIITQWLNHQSFKNWQQSSAYSQTHQKRGTSQGADVRLVNRKLSYHIGIICERYTS
>NZ_CP041727.1|WP_002478547.1|2153494_2155087_+|acyl--CoA-ligase
MKQSSLLAPETYNIVSEIEKHVSDQDKNAIIYENGHNDPIAVTYADLMKQANQVGHVLLNHGLKKGDKILIMMPRSISTYRIYIAALKLGIAIIPSSEMLRTKDLQYRISHGEIDAVITMPEFIKEFLNIEEYTSLTKFVVAGHHEAWISIDDERLNQSEELDMAPTSRDDIAILSYTSGTTGNPKAVTHTHGWGFAHMKMAPKHWLSIKEDDLVWATAAPGWQKWVWTPFLSIMGSGATAFVYNGKFNPTRYLELLQNFKINVLCCTPTEYRMMAKLSNLDKYDIHHLHSAVSAGEPLNKEVVNQFEAHFGLTVRDGYGQTESTLLIGFLKDTKPRPGSMGKAIPGSDTTVVDDEGRQVAPGVKGNIGVPLDLPALFKGYYKDEARTKAAHAGKYYITGDLAHIDEDGYFWFEGRSDDIIISSGYTIGPFEVEDALTHHPAVKECAVVASPHEIRGNIVKAFVILNEGYKASDDLVKTLQDFTKKTVAPYKYPRAIEFVEDLPKTNSGKIRRVELRDAERQKYNQQFKQ
>NZ_CP041727.1|WP_002478548.1|2155335_2157960_+|pyruvate,-phosphate-dikinase
MTKYIYAFDEGQRTMKDLLGGKGANLSEMKRLGLPVPDGFTITTEACIEYLRQHAQLPTEVKTQLVDHLAAFTKRTGKAFSSDTNLLLVSVRSGAKISMPGMMDTILNLGLNDDNVETLASKTGDVRFAYDCYRRLLQMFGEVVYNIPMVAFDTYFEDYKQRHGFENDAAISADGLKDICERFKTIYLEEARKPFPQEPLKQLEEAIEAVFKSWDNDRARVYRDLNEIPHDIGTAVNIQEMVFGNSGDKSGTGVAFTRNPVTGENRLFGEYLLNAQGEDVVAGIRTPQDIQTLYDQMPDVHQAFVKVTKQLEAHYKDMQDIEFTIENGKLYLLQTRNGKRTAKAAVKIAVDLANEGLITQQEAMRKVDVKAIDQLLHPNFDDKALAEATTISTLGLPASPGAATGQIVFSAEDAKVQADSGKKVILMRPETSPEDIEGMVASEAIITTHGGMTSHAAVVARGMGKCCVTGCSDLEINTSAKTVYYPDGELHEGDTISVDGSKGDIYFGEIKTVNAEHSEDFDQFMTWAEDTARLSVRMNAETPQDIEAGYQFGAKGIGLVRTEHMFFGAERLVEMRRFILASSYDERVDALNAIEKYQVEDFEAIFRLSGERPTIVRLLDPPLHEFLPNSAEDIQHVAQQLNISEDILKKRIVDLHEVNPMLGHRGCRLAVTYPELYEMQVEAIISSVIRLKKEGINCKPEIMIPLVSTVEEFTVLKEDLVETIHKLEQQAGEKVDYLVGTMIETPRACLIAGELAEHCDFFSFGTNDLTQLAYGFSRDDAGKFINVYTERNILKLDPFQTLDKDGVGRLIQIAVEQAKRVNSNIKIGVCGELGGDAKSIHQFNKLSIDYVSCSPFRVPGAIIATAQSQVEESE
>NZ_CP041727.1|WP_002478549.1|2157964_2158780_+|kinase/pyrophosphorylase
MKQHVLKLFIVSDSIGETAQRMIQATLTQFPDLTQVEIKKFPYIKNEEEFLNVLNLAHEQGAIVATTLVNPSFNSLGHRFAEEKALPYVDYMSELISIVQEQTQTEPLLESGALRKLNDEYFKRIKAIEYSVKYDDGKHFSDIGEADALIVGVSRTSKTPLSMYLANKGYKIANIPLVPEVAIPESVFKQKGLKVFGLTASPQYIANIRKNRVETLGLTQESQYNSLERIKKELSYAEEVFKKLNATVINTEYKSIEESAFYIEKFLQPKY

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Crispr_ID: NZ_CP041727_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041727_7

2326598-2326679

Orphan

Consensus_repeat	Method
GCAAGTTGGGGTGGGGCCCCAACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041727_7

>merge|NZ_CP041727|7|2326598-2326679|CRISPRCasFinder
GCAAGTTGGGGTGGGGCCCCAACAAAAAGAAATGCGACAAGCATTTCCGCGAACAACGCAAGTTGGGGTGGGCCCCAACAAA

>NZ_CP041727|7|7|2326598-2326679|CRISPRCasFinder
GCAAGTTGGGGTGGGGCCCCAACAAA	AAGAAATGCGACAAGCATTTCCGCGAACAA
CGCAAGTTGGGGTGGGCCCCAACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041727.1\|WP_002478662.1\|2337692_2338457_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|224185
NZ_CP041727.1\|WP_002478654.1\|2321227_2322766_-\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|274735
NZ_CP041727.1\|WP_002478656.1\|2326099_2326555_+\|DUF1307-domain-containing-protein	unknown	unknown	gnl\|CDD\|227145
NZ_CP041727.1\|WP_002478652.1\|2317235_2318471_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|181495
NZ_CP041727.1\|WP_002478658.1\|2328735_2329566_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP041727.1\|WP_002478661.1\|2335799_2337377_-\|FMN-binding-glutamate-synthase-family-protein	unknown	unknown	gnl\|CDD\|223147
NZ_CP041727.1\|WP_002460377.1\|2323075_2324623_-\|aminobenzoyl-glutamate-transporter	unknown	unknown	gnl\|CDD\|367668
NZ_CP041727.1\|WP_002478660.1\|2334009_2335548_+\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|223808
NZ_CP041727.1\|WP_002460367.1\|2331269_2332223_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225762
NZ_CP041727.1\|WP_002460360.1\|2338479_2339259_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|224185
NZ_CP041727.1\|WP_012990726.1\|2314034_2315390_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
NZ_CP041727.1\|WP_002460370.1\|2329562_2330369_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP041727.1\|WP_002478659.1\|2332469_2333993_+\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002478650.1\|2315919_2316186_-\|DUF1413-domain-containing-protein	unknown	unknown	gnl\|CDD\|377790
NZ_CP041727.1\|WP_002478655.1\|2324857_2325934_-\|M42-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349906
NZ_CP041727.1\|WP_002460368.1\|2330370_2331144_-\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|131368
NZ_CP041727.1\|WP_002478653.1\|2318969_2321135_-\|RNA-degradosome-polyphosphate-kinase	unknown	unknown	gnl\|CDD\|235469
NZ_CP041727.1\|WP_002478657.1\|2326925_2328206_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|225428
NZ_CP041727.1\|WP_002460385.1\|2315573_2315765_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002478651.1\|2316340_2317036_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674

Protein	Function_ID	Function_description	E-value
NZ_CP041727.1\|WP_002478662.1\|2337692_2338457_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|224185	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only].	0.00491327
NZ_CP041727.1\|WP_002478654.1\|2321227_2322766_-\|exopolyphosphatase	gnl\|CDD\|274735	TIGR03706, exo_poly_only, exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. [Central intermediary metabolism, Phosphorus compounds].	8.31845e-122
NZ_CP041727.1\|WP_002478656.1\|2326099_2326555_+\|DUF1307-domain-containing-protein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	5.87133e-23
NZ_CP041727.1\|WP_002478652.1\|2317235_2318471_+\|acetylornithine-deacetylase	gnl\|CDD\|181495	PRK08596, PRK08596, acetylornithine deacetylase; Validated.	0
NZ_CP041727.1\|WP_002478658.1\|2328735_2329566_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	2.43826e-83
NZ_CP041727.1\|WP_002478661.1\|2335799_2337377_-\|FMN-binding-glutamate-synthase-family-protein	gnl\|CDD\|223147	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism].	1.28723e-151
NZ_CP041727.1\|WP_002460377.1\|2323075_2324623_-\|aminobenzoyl-glutamate-transporter	gnl\|CDD\|367668	pfam03806, ABG_transport, AbgT putative transporter family.	0
NZ_CP041727.1\|WP_002478660.1\|2334009_2335548_+\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|223808	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism].	1.22109e-92
NZ_CP041727.1\|WP_002460367.1\|2331269_2332223_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|225762	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism].	6.3779e-94
NZ_CP041727.1\|WP_002460360.1\|2338479_2339259_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|224185	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only].	1.26376e-08
NZ_CP041727.1\|WP_012990726.1\|2314034_2315390_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	6.00287e-145
NZ_CP041727.1\|WP_002460370.1\|2329562_2330369_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	3.59558e-99
NZ_CP041727.1\|WP_002478650.1\|2315919_2316186_-\|DUF1413-domain-containing-protein	gnl\|CDD\|377790	pfam07205, DUF1413, Domain of unknown function (DUF1413). This family consists of several hypothetical bacterial proteins which seem to be specific to firmicute species. Members of this family are typically around 100 residues in length. The function of this family is unknown.	1.07719e-08
NZ_CP041727.1\|WP_002478655.1\|2324857_2325934_-\|M42-family-metallopeptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	3.65164e-166
NZ_CP041727.1\|WP_002460368.1\|2330370_2331144_-\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|131368	TIGR02315, Phosphonates_import_ATP-binding_protein_PhnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions].	2.07624e-143
NZ_CP041727.1\|WP_002478653.1\|2318969_2321135_-\|RNA-degradosome-polyphosphate-kinase	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP041727.1\|WP_002478657.1\|2326925_2328206_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NZ_CP041727.1\|WP_002478651.1\|2316340_2317036_+\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	3.22398e-84

>NZ_CP041727.1|WP_002478656.1|2326099_2326555_+|DUF1307-domain-containing-protein
MKKFIAMIAIVVITIVTLSACDKERTKTYEGDIDGKHVITSLTYKNNKVISQSTISTLKYDDMGLSEKEGKALFKKHKALENAKGVDYRLTSERDKIDEKVDIDYNKADIQKIKRNFDLFSYDKNNHKVNMENSVKYLKKLGFEEKSKMTK
>NZ_CP041727.1|WP_002478655.1|2324857_2325934_-|M42-family-metallopeptidase
MKASIELLKTLTDVNGIAGQEMQVKETMRDYLNPISDSIIEDHLGGIFGKREATYGTKSIMLAGHLDEIGFIVTKIDNEGFIKFQPIGGWWSQVMLSQKVTITTDQGQEIRGIIGSKPPHVLEAEERKKAVDIKDMFIDIGARSREDVEQHGIEVGNMITPYSEFETLANSKYLTAKAFDNRYGCAVAVEVLKNLKDENLGINLYAGATVQEEVGLRGAKVAAQTIKPDLAIAVDVCVPYDIPGMSGQTSETALGNGPVVIMMDASSIAHQGLRQHIKEVAKKHYISVQWDTTPGGGTDAGSIHVANEGIPTITIGVALRYMHSNVSVLHTDDYENSVRLITEIVRSLNDETYQQIVW
>NZ_CP041727.1|WP_002460377.1|2323075_2324623_-|aminobenzoyl-glutamate-transporter
MPSSVKRKEKASFITRFLNGVEWVGNKLPDPAVLFFMMCVLLAVMTWVISWFNVSVKHPGNGHTIHIKSIISTDGIAMIMNDAIKNFSEFPALGLVLAVMIGIGAAEKSGYFDKLLISVVNHASKKLILPTIIFIGIMGSIAGDATTVILPPLAAMLFIKIGYHPIAGLAMAYASSLGGFGANLIIGMQDALVYAFTNPATKIVTDKVNTNVAMNWYFIAASVFMLIPTLYFTTTKLVIPHLGKYDDSKAELDDTDQPSSTVTPIEQRALRWANISFIVLVVALIICAIPEGSWLRNPKTGSLIDNSPLINGVGLVILVIFLIPGVIYGVLSKQIKSTKDLGKMISDSLATMSSFILIVFFAAQLLAFLKWSNLGVIVAVKGANLLQGQHGIVLIIGILILSGLVNMVIGSASAKWGILAPIFVPMMLLIGFHPAFTQMIYRVGDSITNPITPMMPYMPLLLTYAQKYDKNMKLGSLLSSLMPYTIVLSIVWTLFLIIWYLLGIPVGPGGPIKAN
>NZ_CP041727.1|WP_002478654.1|2321227_2322766_-|exopolyphosphatase
MEERIGLIDIGSNTIRLVIFKFSKTAGLNEILNIKTPARLSQYLTSKKEMSKDGIKVLIEALKSFKKVAQEFNVTELHPIATAAIRQSKNKNAIIKQVKKELNIDMKIIPELDEAYYGFYAITHTTEIANGVSVDIGGGSTEVTLFKDKELVESHSFPFGVVTLTRMFFENKAHNNKSAIKDMEKFISSQFDELSWLQDKKVALVGVGGSARNVARIHQSEHSYPIGGVHNYTMSDNDIEEVLDIIRKSDRDDLTNLDGLSRDRVDIILPAVCVFKALYKKVNATQFTFSRNGLREGYIIKQIRDRYTDVFDKYNVRKEAIHFLANEYQIEESSSASRLKLAKSLLSQIMQYSEFNLSDKEQRLFEEGAYIYYLGSFIDSDSSSPHSYYIIANSMINGYTHKDRVKLALLASFKNKSLLKFYCTETNWFGNKEIDTIQILGGIIKFVNALNISHTSFVEDVSLKPLKKAEEDFELIVYHKGEPIAEKYQAMRQKKHIEKVLKGKVAITFTKY
>NZ_CP041727.1|WP_002478653.1|2318969_2321135_-|RNA-degradosome-polyphosphate-kinase
MQNQLGENNINLPQYYNNRELSWLDFNYRVLQEAYDDNNPLLEKLNFISIFSSNLDEFFMVRVAGLKDQVKMGYDKPENKAQMTPQEQVDAIQEKNTTYVDKQYERYNELIEELRQYDIEMSQPEQLSNQLLTRLEQEFKTTILPTLTPLGIDAYHPFPKLNNKSLNIFVDIDTEDAINSAIVQIPSLIPRFITLNEGTKQYVLMVEDVITYFINYLFTGYEVLNTFTFRITRNADLTIHEDGAEDLLIEIERFLKERKSGSAVRLEVDGRTANSDDIPWLIDTLEVENNDVYFVNGPLDLTFLFGLVDHLSHKLKFLTYEQYTPQVPRSLGTNNIYELALKRDIFFHHPYESFQPIVDFIREAADDPDTIAIKQTLYRVSKDSPIIKSLKEAAEKGKQVTVLVELKARFDEENNVHWARMLEDAGCHVIYGMTHLKTHSKIALVVKRTHGTLTSFVHLGTGNYNDKTAKLYTDMGIITTNKEIAEDAINFFNYLSGYSVKPVYNKLIVAPFDIRDVFIDRIDKEIKSHHEHGNGHIIMKMNSLTDKAIIKKLFEASQAGVKIQLIIRGICCLKPGIPGISENIEVVSIVGRLLEHSRIYYFYNNGDQRIYLSSADVMTRNMIKRVEILFPVEDNDIAKRLLDYMNLQLSDNQKGRYQDQYGQYHYIKNDMSPLNSQAYLMQKAIKYGKQLKKLASQPSGVPVVSKRGAGWVKKLRDTFKR
>NZ_CP041727.1|WP_002478652.1|2317235_2318471_+|acetylornithine-deacetylase
MEQRLFDLLELLVKYNTESPPGRNTNPLQDDIQRLLEDLGFTIQREVLYPNDSIIVATLKGEDPTAPKLILNGHVDVASVDDDREWNYPPFELTHVNDWLYGRGVSDMKGGMAALFYVLERLHQEGRLPQGDIIVHSVVGEEVGEAGTKRACEIGPKADLALVLDTSDNMALGQGGVITGWITVKSKHTIHDGARHQTIHAGGGLFGASAIEKMMKVIQALNELERHWAVMKSSPGMPPGANTINPAVIEGGRHPAFIADECRLWITVHYLPNECYEDVIAEIETYLNQVAAADIWLKDHPLSFEWGGASMIEDKGEIFPSFEIPTTHPGFKALQQAHELVHHKPLEHGMSTTVTDGGWTAHFGIPTILYGPGSLTEAHSVDEKITATELQTYSEVLYQYLKQWYQHPVKN
>NZ_CP041727.1|WP_002478651.1|2316340_2317036_+|SDR-family-oxidoreductase
MDNIVGRVAVITGASSGIGKEIAKAMHSMGFRVVLAGRNRKRLNQVAMHMRKYERLIVEIDMTQRQEVEALIAKAIEYFGRVDILVNSAGLSLSSQITSHQVEDWDAMIDTNLKGTLYAINAVLPHFQQYKEGHIINLASISAEEVTKDSTVYSATKAAVQMISRGLEKDLARTGIKVTSILPGMVDTPMTEQSDFGGRKKLETYDIAESIRYAITQPPHVNVNQITIRPV
>NZ_CP041727.1|WP_002478650.1|2315919_2316186_-|DUF1413-domain-containing-protein
MTYHDRVMKLRAEKKRMGFSFRFEDLFSEEELLNMTVAQRKTAEKKFIREIDNMHDVRMPFSSQDGFKNKLYNLEYQYNEVKKNFKVV
>NZ_CP041727.1|WP_002460385.1|2315573_2315765_+|hypothetical-protein
MRKVIEQVIFSNESSYKIHVHTGVNQGLIGDIRDGYITIDSMPYIDAERLYQYGLEHKEVVPS
>NZ_CP041727.1|WP_012990726.1|2314034_2315390_+|dihydrolipoyl-dehydrogenase
MMVEQFDLIVVGAGPGGYVASIRAAQLGMKVAVIEKDRVGGTCFNVGCIQSKLLIEHGKRVYEMNQAKDWGIFANHIELDINKMNHRKDEVVDEIIGNVHHLFDENHVNYIQGEAVVHSDLSVEVNGRVLHANDIVLATGSSPFVPPIEDVDKIDYETTDSFFKHSTLPEQLTIVGGGVIATELASAMADLSVHVTILESGDNILRSEDKDVQASIRKLLDHQGVKIVTHARVNKVDTDAVYLENGSQLPYGTLLFATGRRPNLQAFESLNLTMEDKTIKVNEFNETSVPHVYAIGDLVAGYQLAHTASAHGAVVAEKIAGLNPDPVKQEDIPRCIYTRVESASIGLSEAQAIAQGYDVKVTQSNFKEAPKALIKGETNGVIKMVIDKATHHILGIFAAGPNATDVVGQMSAMRAAHGQLEDLAAMIQPHPALSETIGETANAYFNKAIHQ
>NZ_CP041727.1|WP_002478657.1|2326925_2328206_-|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MTNQNWHFETQTIHAGQEIDDFSKSRAVPIYQTSSYVFDNTQHAQDLFALAQPGNIYTRIMNPTQNVFEERVAALEGGIGALATSSGQAAITLALLNIVNTGDEIVASSNLYGGSYNLLNVTFKKLGITVHFVDPDHPENFAAQINDNTKAIYAETMGNPKIDVLDITAVADVAHQHGIPLIIDNTFASPYLCRPFEFGADIVIHSATKFIGGHGTSIGGIIVDSGKFNWDNGKFPGLVEPDESYHGVSYTKDVGEAAYITKARVQLLRDLGSAVSPYNVHEFLIGLETLHLRMERHSANALKVAQFLDQHPKVTWVNYPGLVNNKYHALAEKYLPKGQGAILTFGVDGSVEDISRFVDALDLFSLLANVGDSKSLVIHPASTTHLQLSEEEQRKSGVLPEMVRLSIGTENADDIINDLAQALETV
>NZ_CP041727.1|WP_002478658.1|2328735_2329566_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MTHEPQTFQSPKYNLSTKRQKQRVIKRWVIAIVVALIVIWGFAGMPALELKSKSVEILKAIFSGLFHPDLGYIYIPEGEDLLRGLLETFAIAVIGTFIAAIICIPFAFLGANNLVKLRPVTGTTKFILSVIRVFPEIVMALIFIKAVGPGSFSGVLALGIHSVGMLGKLFVEDIESLDFTSVESLKASGANKTKTLVFAVIPQILPSFLSLILYRFELNLRSASILGLIGAGGIGTPLIFALQTRSWDRVGIILIGLVIMVAIVDLISGAIRKRIV
>NZ_CP041727.1|WP_002460370.1|2329562_2330369_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MTSPATSTNKYDKYLNKKLSLKTSFSILIVAVLVIWSFVYTGFSFSDLMVGVPQIGDFFKQMFPPEWSYLKAIWQPMLDTIRMAIVGTFLGAIVSVPIALICASNIIRTKWITIPARFILNIVRTIPDLLLAAIFVAVFGIGQIPGVLALFILTICVIAKLLYEAIETIEPGPMEAMTAVGANKTKWIVFGVVPQIISTYFSYVLFAFEINIRASAVLGLVGAGGIGLFYDSTLGLFQYPRTAMIILFTLVIVVIIDYVSSKVREQLA
>NZ_CP041727.1|WP_002460368.1|2330370_2331144_-|phosphonate-ABC-transporter-ATP-binding-protein
MSQIEFKDVSKVYPNGHVGLKDINLNIEKGDFAVIVGLSGAGKSTLLRSVNRLHDVTSGDITIEGKSITQAKGKSLLLMRRNIGMIFQHFNLVKRSTVLRNVLSGRVGYHPTWKMILGLFPKEDKIKAMDALERVNILDKFDQRSDELSGGQQQRISIARALAQEPSIILADEPVASLDPLTTKQVMDDLKKINEELGITILINLHFVDLALEYGTRIIGLRDGELVYDGPAEEATEEVFNEIYGRQLKADEKLGVN
>NZ_CP041727.1|WP_002460367.1|2331269_2332223_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MKHVKYLLLLVLSVVIFAAACGGNSSLDNNSKSSNSESGKGNYKPKELTVQFVPSQNADKLEAKAKPLEKLLSKELDIPVKVSVSTNYNTIVEAMKSKKVDVGFLPPTAYTLAHDQKAADLLLQAQRFGVNKDGSPTKKLVKDYKSEILVKKDSGIKSLKDLKGKKIALQDVTSTAGYTFPIATLKEKAGIDATKDMKIVNMKGHDQSIISLLNGDVDAAAVFQDARNVVKKDQPNVFKDTKILELTKPIPNDTISVRPDMDKDFQKKLKKAFKDISKTKEGHKIISEVYSHEGYTDAKDSDFDIVREYEKKVKDMQ
>NZ_CP041727.1|WP_002478659.1|2332469_2333993_+|DNA-binding-protein
MKMIKVVSSTIVASALALSMFPSTQAAETNTASRTVLFDNSHGQTAGAADWVIDGGFSDYADSMKKQGFAVKSLDGEANISQESLKNSDILVIPEANIPFKTTEQQAIVNFVNHGGSIIFISDHYNADRNLNRIDSSEAMNGYRRGAYADMTKDMDQGEKQSKAMAGVSSSDWLAQNFGVRFRYNALGDLNTSNLVSSDESFGITKGVKSVSMHAGSTLAITDPKKAKGIVYTPDHLGNNAKWSHAVDQGVYNGGGKAEGAYIAIAKVGKGKAAFIGDSSLVEDSSPKYLREDTGKTKKTYDGFKEEDNAQLLNNLTSWLSKKEATPNLAKSGVKLDKATVLHDFEQPQNSTEPQKEPWSQPPEGYHWYDRSTFAPGSYGSTKSTKDDGDKQPGDQPAVQNVAFAIPKDVQANTPFNITINLSQLPANQSLDNLKLGIYQDGGKQIGQFSTDGKSYSNIGYGSLPTIKVNKDGTASVTISAKVTESLKGANIRLKQGDKTLKTEKLK
>NZ_CP041727.1|WP_002478660.1|2334009_2335548_+|bifunctional-metallophosphatase/5'-nucleotidase
MTQLAFYILSDIHGYIFPTDFKQTKGYKPMGLLLANHIIEQDRQRYDASFKIDNGDFLQGSPFCHYLATHIHSSKPLTDIYNRIGFDFGTLGNHEFNYGLNYLTQSINRLNYPILCANILKDNKSLTEQGIMYIKKQGYNIGIIGLTTQYIPHWERPEYIQHLTFNSAVQTLEDILPQVREQADIVVVSYHGGFERNIDTYQPTEVLTGENEASEILQRFGSDIDVLITGHQHREIAAIKHDTVILQPGTRATQIGKVTLTFNDRRQLVQRTSELLPVHDDSAFKLTDKDSQLMSDVDTWLDTPIAEIQQNMIVDEPFTARIAPHPFINVLLHALLQTSGAQIASTALFDSATGFDKTITMRDIINNYPFPNTFKVLEMTGKGIREALEQSARYFDLTDSGDVGINDTFLNPKPQHYNYDIFGGVSYNIKVSEPMGHRVHDIKVEGQPLVEDKIYTVCVNNYRAVGGGDYNMFAEAKVVKDIQVEGAQLLIDYLTHHNLNNMPQVVDFKVEI
>NZ_CP041727.1|WP_002478661.1|2335799_2337377_-|FMN-binding-glutamate-synthase-family-protein
MILTTMQFIVNVIIVSCLLFVVLLGLWLLFKDKHQKQHSVLRNFPLLGRIRYFSEKIGPEMRQYLYANDTEGKPFSRVDYKNIVIAGKYNSRMTSFGTLKHYEHGFYIQNAMFPLQSTELVIDNQHMISTFIYQVDNERLFKRDEHRKPADIKPFQLDDQHAVVIGNDLAHPFIVKRLVGQSGMSYGALGQRAITALSQGLARAGTWMNTGEGGLSDYHLSGGGDIIFQIGPGLFGVRDQEGNFSKDEFVKLVNQSAIKAFELKLAQGAKTRGGHMEGNKVTEEIAQIRNVKPFQTINSPNRFNFISNAAELITFVDELKQLGQKPVGFKIVVSHVDEIEILVKEMIRLDKYPSFITVDGGEGGTGATFQELQDGVGLPLFTALPIVSGMLERYGIRDKIKIFASGKLITPDKIAIALGLGADLVNIARGMMISVGCIMSQQCHLNTCPVGVATTDPKKEKALIVEEKTFRVTNYITSLHEGLYNIAAAVGVNNPTNITAQHIIHQQQNGTLQSIDTYKLKLLEP
>NZ_CP041727.1|WP_002478662.1|2337692_2338457_+|CPBP-family-intramembrane-metalloprotease
MQTLNTYNTRQPIDAHVKKRLFWVIPVYVFLKVLMPIIIVFGVYGIWAVLTQDKPTQVIYPIVLTLSFIVAEIVTLKCFFFLYQQKLRTIYQRLSSDIKPMLWPIVIVSCLTLLAYYGGQCIAHHLNQPWGFQHSQSEQYLSGMFTHPHALPFVWVSMVVLRPLVEELIFRHLFIHELAKCIPMVVAMIFSIIADVVAHSYHYHSVLEIGIYSLIPIGAVIIYRWSQQNLLAAYVYHSMTQCIIFLVLSYQSYL
>NZ_CP041727.1|WP_002460360.1|2338479_2339259_+|CPBP-family-intramembrane-metalloprotease
MNHRMTKNNRISSMTYHQNPWRQPQMVKRDFLLILVYVLGNMYLPFILADAINWLSFTLLHRPSGLTYTSQLYALLAQLSVVLIFWALHYRALLNTAIARVKQLQRYIYLMIIVLLVMYVANIVYANVMQFLPEHWQFHDTQNEQEIRKLFSNIKVWPLLFLNIVIITPIVEELLFRHLLIHELGKKLSYPVMSIISILLFAGIHVTDATSPFEIGPYLIMATSFVVAYNMSGRNLAVTIALHSFNNLLSFILTLLQFL

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Crispr_ID: NZ_CP041727_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041727_8

2358906-2358986

Orphan

Consensus_repeat	Method
ACGGATAACGCAAGCTGGGGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041727_8

>merge|NZ_CP041727|8|2358906-2358986|CRISPRCasFinder
ACGGATAACGCAAGCTGGGGTGGGGGCCCCAGCAAAAAGAAATGCAAAACGCATTTCTACGGACAACGCAAGCTGGGGTGG

>NZ_CP041727|8|8|2358906-2358986|CRISPRCasFinder
ACGGATAACGCAAGCTGGGGTGG	GGGCCCCAGCAAAAAGAAATGCAAAACGCATTTCT
ACGGACAACGCAAGCTGGGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041727.1\|WP_002478684.1\|2371093_2372038_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002478675.1\|2355568_2356225_+\|DUF443-family-protein	unknown	unknown	gnl\|CDD\|335700
NZ_CP041727.1\|WP_002478680.1\|2363653_2364586_+\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|235821
NZ_CP041727.1\|WP_002460335.1\|2359252_2360014_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|184495
NZ_CP041727.1\|WP_002478671.1\|2352789_2353062_+\|TIGR04197-family-type-VII-secretion-effector	unknown	unknown	gnl\|CDD\|275045
NZ_CP041727.1\|WP_002478673.1\|2353432_2354890_+\|transposase	unknown	unknown	gnl\|CDD\|368093
NZ_CP041727.1\|WP_002478681.1\|2364767_2365034_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP041727.1\|WP_002478674.1\|2354892_2355519_+\|DUF443-family-protein	unknown	unknown	gnl\|CDD\|335700
NZ_CP041727.1\|WP_002478679.1\|2362076_2363471_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340879
NZ_CP041727.1\|WP_002460334.1\|2360014_2361769_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP041727.1\|WP_012990737.1\|2367085_2368597_-\|serine-hydrolase-FLP	unknown	unknown	gnl\|CDD\|365903
NZ_CP041727.1\|WP_002478678.1\|2358280_2358742_-\|antiholin-like-murein-hydrolase-modulator-LrgA	unknown	unknown	gnl\|CDD\|235222
NZ_CP041727.1\|WP_002460346.1\|2351799_2352480_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP041727.1\|WP_002460342.1\|2356221_2356533_+\|DUF4176-domain-containing-protein	unknown	unknown	gnl\|CDD\|226892
NZ_CP041727.1\|WP_002478682.1\|2365237_2366089_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP041727.1\|WP_002478677.1\|2357579_2358281_-\|antiholin-like-protein-LrgB	unknown	unknown	gnl\|CDD\|179810
NZ_CP041727.1\|WP_002478672.1\|2353077_2353443_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002460323.1\|2368878_2370705_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|372624
NZ_CP041727.1\|WP_002478676.1\|2356666_2357308_+\|DUF443-family-protein	unknown	unknown	gnl\|CDD\|335700
NZ_CP041727.1\|WP_014533224.1\|2366152_2366974_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|179310

Protein	Function_ID	Function_description	E-value
NZ_CP041727.1\|WP_002478675.1\|2355568_2356225_+\|DUF443-family-protein	gnl\|CDD\|335700	pfam04276, DUF443, Protein of unknown function (DUF443). Family of uncharacterized proteins.	6.30747e-40
NZ_CP041727.1\|WP_002478680.1\|2363653_2364586_+\|2-dehydropantoate-2-reductase	gnl\|CDD\|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	8.83675e-117
NZ_CP041727.1\|WP_002460335.1\|2359252_2360014_-\|DNA-binding-response-regulator	gnl\|CDD\|184495	PRK14084, PRK14084, DNA-binding response regulator.	1.00235e-149
NZ_CP041727.1\|WP_002478671.1\|2352789_2353062_+\|TIGR04197-family-type-VII-secretion-effector	gnl\|CDD\|275045	TIGR04197, conserved_hypothetical_protein, type VII secretion effector, SACOL2603 family. Members of this protein family are similar in length and sequence (although remotely) to the WXG100 family of type VII secretion system (T7SS) targets, described by family TIGR03930. Phylogenetic profiling shows that members of this family are similarly restricted to species with T7SS, marking this family as a related set of T7SS effectors. Members include SACOL2603 from Staphylococcus aureus subsp. aureus COL. Oddly, members of family pfam10824 (DUF2580), which appears also to be related, seem not to be tied to T7SS.	1.02519e-18
NZ_CP041727.1\|WP_002478673.1\|2353432_2354890_+\|transposase	gnl\|CDD\|368093	pfam04740, LXG, LXG domain of WXG superfamily. This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.	1.39116e-07
NZ_CP041727.1\|WP_002478681.1\|2364767_2365034_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	6.16496e-06
NZ_CP041727.1\|WP_002478674.1\|2354892_2355519_+\|DUF443-family-protein	gnl\|CDD\|335700	pfam04276, DUF443, Protein of unknown function (DUF443). Family of uncharacterized proteins.	2.09616e-44
NZ_CP041727.1\|WP_002478679.1\|2362076_2363471_+\|MFS-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.38074e-39
NZ_CP041727.1\|WP_002460334.1\|2360014_2361769_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NZ_CP041727.1\|WP_012990737.1\|2367085_2368597_-\|serine-hydrolase-FLP	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	6.70581e-68
NZ_CP041727.1\|WP_002478678.1\|2358280_2358742_-\|antiholin-like-murein-hydrolase-modulator-LrgA	gnl\|CDD\|235222	PRK04125, PRK04125, antiholin-like protein LrgA.	6.29535e-71
NZ_CP041727.1\|WP_002460346.1\|2351799_2352480_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	1.98074e-72
NZ_CP041727.1\|WP_002460342.1\|2356221_2356533_+\|DUF4176-domain-containing-protein	gnl\|CDD\|226892	COG4495, COG4495, Uncharacterized protein conserved in bacteria [Function unknown].	3.23782e-28
NZ_CP041727.1\|WP_002478682.1\|2365237_2366089_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	5.38244e-30
NZ_CP041727.1\|WP_002478677.1\|2357579_2358281_-\|antiholin-like-protein-LrgB	gnl\|CDD\|179810	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional.	1.31693e-130
NZ_CP041727.1\|WP_002460323.1\|2368878_2370705_+\|APC-family-permease	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	5.1718e-32
NZ_CP041727.1\|WP_002478676.1\|2356666_2357308_+\|DUF443-family-protein	gnl\|CDD\|335700	pfam04276, DUF443, Protein of unknown function (DUF443). Family of uncharacterized proteins.	2.31921e-44
NZ_CP041727.1\|WP_014533224.1\|2366152_2366974_-\|membrane-protein-insertase-YidC	gnl\|CDD\|179310	PRK01622, PRK01622, membrane protein insertase YidC.	1.0147e-49

>NZ_CP041727.1|WP_002478678.1|2358280_2358742_-|antiholin-like-murein-hydrolase-modulator-LrgA
MANENVNKAKAHSQSVVSKTYNFFQQALTIAVILLISKIIESFIPFPMPASVIGLVLLFIALCTGIVKLGQVESVGTALTNNISFLFVPAGVSVINSLPILSKNPILIILLIIISTLLLLVCVGFASQFLVTKSLFPTAEQNEKSRHVEGDNH
>NZ_CP041727.1|WP_002478677.1|2357579_2358281_-|antiholin-like-protein-LrgB
MIEHLGINTPYFGILVSLIPFVIAQYFYKKTNGFFLLAPLFVAMVAGIAFLKLTGISYAQYKVGGDIIYFFLEPATISFAIPLYKKRDVLKKYWLQIFGGITLGTLAALILIYLVSTLFQLGNTVSASMLPQAATTAIALPVSTGIGGVKELTSLAVILNAVVISALGTKIVKWFKISNPIARGLALGTSGHTLGVAAAKDLGETEESMGSIAVVIVGVIIVAIVPPLASILF
>NZ_CP041727.1|WP_002478676.1|2356666_2357308_+|DUF443-family-protein
MLCESKIINKNPKYRIIKYKDDYLMVDIVSHWFTFLFPMINWFIPKRYAKLSEEEYNNLNIVKPVKNSGASIGVGLAILISVLLRKYVFIFDVQVQQSIAVISCIIGFLCVFIFFLYINKKVTLDIYKINKTHSKIILIPTLKNIGFTLFSYIFLGGFVWMILYGLTVENLYNIFIFIIWIGSIALFFFFNMFAIMDKKVHIILKNKEMNCHG
>NZ_CP041727.1|WP_002460342.1|2356221_2356533_+|DUF4176-domain-containing-protein
MITIGSIVYLKGGSQKMMILNRGPIIEQDDKKVMFDYSACKYPLGLVENQIYYFNTENVDRVIFEGYSDDDEIRFQELYQEMLNELSDDITRGEVEEKQFGLE
>NZ_CP041727.1|WP_002478675.1|2355568_2356225_+|DUF443-family-protein
MKWEVVIMLCESKIIRMNPKYRIIKYNNDYFMVDTICHWITFLFPMINWFVSKRYAKLSEEEYNNLDIVKPVKNSGASIGAGLAILISALLRNYVNIFNIQIQESVAVLSCVIGFLGVFIFFLHINKKVTLDIYKRNKTHSKTILIPTLKSIGFTLTSYVLCGGCALIIMEMLTIDHLYNVFIFILWVIWIAFFFFINMFAIMDKKVHVILKNKEVKI
>NZ_CP041727.1|WP_002478674.1|2354892_2355519_+|DUF443-family-protein
MLCESKIINMNPKYRIIKYNDDYLMVDTISHWITFLFPMINWFVPKRYAKLSEEEYNNLDIVKPVKNSGASIGVGIIIILNVLFRKYIDVFNVQVQESVAILSCVIGFLGIFIFFLYINKKVTLDIYKRNKTKSKIILIPTLKNFGFTLFSYLLFGGISWVTMEMLTIDHLYNIFMFIVWIGIIAAFFFVNMFAIIDKKVHIILKNKV
>NZ_CP041727.1|WP_002478673.1|2353432_2354890_+|transposase
MSIDMYLNKSKNQASNMRKLSQAMNQSYDSLNNAVLQFVTKEDLQGKAYRSAKQFFSAVVIPLSYSMKTLSDMTEEACTTFVERYTQEVDNQSLKESELEEDINELKQRIALLEEINGGLKKYLSEKRDTISRNNRMIASLEQQKHELEEKLRKLQEFNQKSPEIFKDVEAFQDVVKQGLNQLQTSWNPVTKEFNIPSGKDLEWAKVSNEKYLKVAMKKIEEKAKTGKLNKQDGKIIQEYAEKHQDEDLPQSLINYFIQNKDNIKQSLEIDISSKLIEQIGVQSKNIGVFINTAGGYKGPKGPNSFVQVKRTWGDAIIKDSKEFAKNGKILGGVITGLGFFISVRSDLNEGKTCGEALSHNALTMSAGWVTSTIISGTIIALAANPVGWAALAGIAVGTLAAYGADWAYQNNKLGIKDKVDWLGHKMDPVLGQLGQTKDQTIKILDNTATNVSNGVKNTAETVKNTVGEAVNNIGDNMNPMKWKW
>NZ_CP041727.1|WP_002478672.1|2353077_2353443_+|hypothetical-protein
MDKVTTLNNQIYKTNLEVETLTEQQRGLIHLINDYEDATRNTEKLYDRLIYRYGSSNSAFSLEQHRDEFQQEKQAILEELIDNQDNVKHQIRKLNDCIEVLEAQRNIELHKANEKGHDYEH
>NZ_CP041727.1|WP_002478671.1|2352789_2353062_+|TIGR04197-family-type-VII-secretion-effector
MSEIKSDMSKTYHAYYIINNATRSCSSISEPGKDESTTVSGNKNAHTAIEQLLTINTSITAALEKANTTLKEVGDSFEAMDLTLGNQISK
>NZ_CP041727.1|WP_002460346.1|2351799_2352480_+|ABC-transporter-permease
MDGNLLQQLAHYYSTNFGYLMGLFFKHLLMSVYGVLFASIVGIPIGIFIARFKKLAWPVITIANVIQTVPAIAMLAILMLALGLGPTTVVVTVFLYGLLPIIKNTYTGIVEVDANIKDAGKGMGMTSNQVLRMIELPLSLSVIIGGIRIALVVAVGIVAIGSFIGAPTLGDIIIRGTNSTDGTAFILAGAIPIALIAILIDIGLRMLERKLDPTQKKKGPQPQTIN
>NZ_CP041727.1|WP_002460335.1|2359252_2360014_-|DNA-binding-response-regulator
MNILIVDDEPLARNELHYLLDNIPTVKHVEEAENISETLEHLLYASFDAVFLDINLMDESGIDLAEKIKKMQHAPYIIFATAHDTFAVKAFELNATDYILKPFEQQRIEQTIEKIARTKQYVNSAADQNKLEPQNHQNINTHTKQTVLPIEVDERIHVLNVEDIVAVTVNNGITTIHSVNQDYQTSEKLNYYEKKLPTTQFLKIHRSTIINKVHIKTVEHWFNYTYQLTMTSDIKLQVSRSYMKTFKQEIGID
>NZ_CP041727.1|WP_002460334.1|2360014_2361769_-|sensor-histidine-kinase
MFNLFILLLERVGLIIIIAYLLMNTSHFKTMMGEREKWRSQWQLLIIFGLFAITSNFTGIEIKDGQIISSNIYYHLNSEASMANTRVLTIGASGLIGGPYVALFVGIISGLSRMYIGGADAYTYLISSIIIGLTSGFIGHLAIKNHRYPTVLQGAVIGIINEAIQMLCILIFSEDTTAAIELVQLISLPMILINSIGTAIFLSIILSTLKQEEQARAVQTHDVLQIANETLPYFRAGLNEASAKRVAEVILPLMNVSAVAITNKKDILTHVGAGSDHHIAKKEIITNLSKEVIRSGQLKEAESKEGIGCNHDNCPLEAAIVIPLYTNHNVVGTLKFYFKDKHDVTNSTKQLARGLAEIFSSQLELGKAETQSKLLRDAEIKSLQAQVNPHFFFNAINTISALVRIDSEKARKLLLQLSQFFRSNLQGARNNTITLEKELQQVEAYLSLEQARFPNRFHIDYHIDKQYHHILIPPFIIQILVENAIKHAFKNRKANNHITVTASQHDDAIQLTVTDNGQGIPKERIPLLGQISVNSETGTGSGLENLNRRLIGLYGPTSQLSITSTNKGTRVSCMIPYHEQKEDI
>NZ_CP041727.1|WP_002478679.1|2362076_2363471_+|MFS-transporter
MNTSQEFRGDNRLLAGIIIGVLTFWLFAQSVVSVIPALQSSFNANIGTINIAVSLTSLFAGLFVVGAGDIADKFGRVKMTYLGLALNIVGSLLIIIAPFPWLLITGRALQGLAGACIMPATLAIVNTYFLGKERQRALSYWSIGSWGGSGICSLFGGWVASTIGWHWIFIISIALSFVAFFLIKHTPETKAETTGSEVKKFDVIGLILLVITLLSVNVVVTQASDKGLFSPMILTLFVVFFIAGFAFLIYENKADNPLVDFHLFRNKGYSGATVSNFMLNGVAGGTIVVINTFYQQKLGFTSGQAGMISITYLISVLIMIRVGEKILQAQGAKRPLLFGSAFTFIGLLLLSLTFLPDIWYIISSVVGYLLFGTGLGMYATPSTDTAVAEAPDEKVGVASGVYKMASSLGNAFGVAMSSTIYGLFASAMNLQWGGAAGVLFNAGIAVLAFFMILLLVPKRTNMTP
>NZ_CP041727.1|WP_002478680.1|2363653_2364586_+|2-dehydropantoate-2-reductase
MKIAIAGSGALGSGFGAMMYKQNYDVTFIDGWEPQAQAVKQDGLHIDINGEANHLNIPMYHDTEIPKGDQYDVIFLFTKSMQLSDMLEQIKPHIHEHTIMVCTMNGLKHEDVIVNYVDEARIVRGVTVWTAGLESPGHTHLMGAGPVEIGALIPDGQANVDVVFDILKHSGLNPLKSENLQQSIWKKICVNGTANALCTVLECRLSTLNASEYALNLVYKLTQEILAVATIDGVHLNVDDIYDYLVDLNHKVGPHFPSMYQDLINNQRLTEIDYINGAVARLGQEHGIDAPVNQFVTNLIHAKESQRQAK
>NZ_CP041727.1|WP_002478681.1|2364767_2365034_+|GNAT-family-N-acetyltransferase
MGYLERETFITIAVIAMRNTYFYEIKNIAVDINYQCQGLDRRLMEQIFTDYRGTTMYGGTSDSPVTQSFYRSLGFKYVETNKVFYYQL
>NZ_CP041727.1|WP_002478682.1|2365237_2366089_+|NAD(P)-dependent-oxidoreductase
MVKIFVTGATGLIGTKLTQRLLEEGYDVAGFTTSEQGKQRLEAANVKAYIGDILKADTIEAAIADFQPEIIINQITDLKKVDMTANTKVRIDGSKNLIDAALKHHVKKVIAQSIAFTYEPGEGLATEETPLDDHSTGDRKITVEGVEGLEEQTARMDNYVVLRFGWLYGPGTWYGKDGMIYNQFIDGEVTLSDGVTSFVHLDDAVETSIQAINFANGIYNVADDEPVKGSDFAQWYKQQLKVNPKVNITPAEPFERGVSNEKFKSQGGTLQYKSWKDGMNPIQ
>NZ_CP041727.1|WP_014533224.1|2366152_2366974_-|membrane-protein-insertase-YidC
MNKHTRLLFFSCILLLAGCNYSKKQHQTGFFFYVFVKPIDWLLHSIGQLFHSYGIAIILIVIIIRSILLPLMLNQMKQMHTLREKRAIVQDEISDIQTQMRQASTPEIRKEANQLLLAKYKEYGISPFKSILGSLPIFIQIPIILGLLACIKHPTSDALAQHPHFLWFNLMHPDIWLALLAGLFYFIQPLVNAIHYPKGQRKTYYTMMVLSPLFIIYASLHSAAAISLYWVVSASFLIVQTHFGHRRYKKQAQAAAIQLENYIAQRDQTSSQH
>NZ_CP041727.1|WP_012990737.1|2367085_2368597_-|serine-hydrolase-FLP
MKKKIFAFLGGTIFVVTILTIAMIINHHINQKKTETMLSKSSQHYIDKIITSEMDSGHIPGLSVLIMKDNKVYLNKGYGYANTSTKVKATPKTRYEIASNTKAFTGYAILQLENEGKLHLSDKVSKYVPGFYMKYKDKRIDDITINQLIAQTSGIPGDITDNDTITSKNDSLSGIVDSIKGRELNNKPGDQFEYSNMNYDILGLIVQKVSGQSYSSYLENQIFSPLNMHQTYVKGDTEKKGSTAQGYEIKHGKAVKDNPKYNVGDGPAAYMVSSTKDLESWMSRQLNPTQATQSLVQSSHKPKVKTADDNKAPSYATGWFVDDSEANTIVYHPGTLENFSSYILLNKKKNYGIVVLANAYSDKTPDIAEDLNSQILNNKNYTTIENAINQSSLVSYVIITLSLFITIAIAFYMLRRIINIYHGTFVIHVQWKLLGYFLIIMAVFISLMTAIYLLPDLVMGNTNWDFIMVWLPLHAKLALWSVMLTILCATITLVTMLFSKKKR
>NZ_CP041727.1|WP_002460323.1|2368878_2370705_+|APC-family-permease
MFNQFKRLIIGKPKRNRELKNEKISKFKALAILSSDALSSVAYGPEQILLTLSIVGAAAAWYTLPIAVAVLILLAALTLSYRQIIYAYPKGGGAYMVSKSNLGEKWGLLAGGSLLVDYILTVAVSISSGADALVAAIPTLYSHKVLIACLLVLFILLLNLRGLTESATVLSYPVYLFIVGLIVMIIIGTFKVATGQAEPHMQSAVGTAVPGVSLFLLLKAFSSGASSLTGVEAISNAVTNFKEPGPNNAVKTLIAMGSILGFLLVGIVGLSYWYGILPQEETTVLSQLAKHVLGQNVAYYFVQATTVMILVLAANTGFTAFPMLAASMAKDKYMPVMFTARGDRLGYSNSIIVLGVLAIILIILFDGKTENLIPLYATGVFIPFTLAQFGMVIKWIKGREKGWAVKLIANAVGGTITFVVFMIFLITKFNQVWPILIFLPIVVIGFLKIRMHYRDIAEQLRSNAMIQDMPIVDKNLALVPISSITSAVDKSIYYAQMIADDVIAVHVSFGDKDETCLQNKWKAHFPDIRLVILRSEYRSVIRPISRFIDKINKKANDKNYVITVVVPQFVTKKPWHNFLHNQTSIRLKMHLFYQKNVILATIPYKLKK
>NZ_CP041727.1|WP_002478684.1|2371093_2372038_+|hypothetical-protein
MRKGIVMILLALGLTLAGCSHHDNDNKESSTKSDKSSKTDTETVKIKDDDKMTDKEKEYKELEKKASKKEKVDIMGKLDPLVTEKSLTNKTGMQGWKDYKELMKKVEIADYNYVKESKGASMKEVDDFFKDKKGVKRKEIKNPGGLKQIDYWYVDPSGKKIGKSNIPEFYAEILTKYKDGKLVYASIEPGFYTADFAKALDGDKMKDIKTLNQLVAPKPVSYGIGQMKYSGIPLVNVSVIAKAPAKKKEDQVPVLAFYTFSPFNYNSDKEPQVAYLSGIEFMSGSRDFGNSNYLSMMKFIKEQKEVLDQGVHDS

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Crispr_ID: NZ_CP041727_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041727_9

2447120-2447268

Orphan

Consensus_repeat	Method
TTTGTTGGGGCCCCACCCCAACTTGCTTTGTCCGTTGCCTTTCTTTTG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP041727_9

>merge|NZ_CP041727|9|2447120-2447268|PILER-CR
CACCCCAACTTGCTTTGTTTGGTGAATTTCTTATCGAAATTCTCTTTGTTGGGGCCCCACCCCAACTTGCTTTGTCCGTTGCCTTTCTTTTGGAAAGCCATTTTGTTGGGGCCCCACCCCAACTTGCTTTGTCCGTTGCCTTTCTTTTG

>NZ_CP041727|9|2|2447120-2447268|PILER-CR
CACCCCAACTTGCTTTGTTTGGTGAATTTCTTATCGAAATTCTCTTTGTTGGGGCCC	CACCCCAACTTGCTTTG
TCCGTTGCCTTTCTTTTGGAAAGCCATTTTGTTGGGGCCCCACCCCAACTTGCTTTG	TCCGTTGCC
TTTCTTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041727.1\|WP_002478737.1\|2450673_2450886_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002478732.1\|2445201_2446107_+\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NZ_CP041727.1\|WP_002478736.1\|2450278_2450656_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002460231.1\|2442910_2444647_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP041727.1\|WP_002460218.1\|2452707_2453856_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP041727.1\|WP_002478730.1\|2439626_2440214_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP041727.1\|WP_002478735.1\|2448464_2450078_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP041727.1\|WP_002478729.1\|2438510_2439407_+\|urea-transporter	unknown	unknown	gnl\|CDD\|163267
NZ_CP041727.1\|WP_002478734.1\|2447504_2448137_+\|stage-II-sporulation-protein-M	unknown	unknown	gnl\|CDD\|376676
NZ_CP041727.1\|WP_002460241.1\|2435400_2435853_-\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_CP041727.1\|WP_002478741.1\|2454890_2455421_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP041727.1\|WP_002478726.1\|2435865_2437581_-\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|237305
NZ_CP041727.1\|WP_002478733.1\|2446337_2446982_+\|DUF443-family-protein	unknown	unknown	gnl\|CDD\|273508
NZ_CP041727.1\|WP_041612352.1\|2451360_2451666_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002478731.1\|2440417_2442193_+\|oleate-hydratase	unknown	unknown	gnl\|CDD\|237575
NZ_CP041727.1\|WP_002478738.1\|2451864_2452500_+\|DUF443-family-protein	unknown	unknown	gnl\|CDD\|335700
NZ_CP041727.1\|WP_002478742.1\|2455847_2456459_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP041727.1\|WP_002478740.1\|2453995_2454847_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP041727.1\|WP_002478727.1\|2437580_2437988_-\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|237302
NZ_CP041727.1\|WP_002478728.1\|2438000_2438303_-\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|183913

Protein	Function_ID	Function_description	E-value
NZ_CP041727.1\|WP_002478732.1\|2445201_2446107_+\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	2.55223e-96
NZ_CP041727.1\|WP_002460231.1\|2442910_2444647_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP041727.1\|WP_002460218.1\|2452707_2453856_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.99371e-58
NZ_CP041727.1\|WP_002478730.1\|2439626_2440214_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.85673e-12
NZ_CP041727.1\|WP_002478735.1\|2448464_2450078_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP041727.1\|WP_002478729.1\|2438510_2439407_+\|urea-transporter	gnl\|CDD\|163267	TIGR03441, urea_trans_yut, urea transporter, Yersinia type. Members of this protein family are bacterial urea transporters, found not only is species that contain urease, but adjacent to the urease operon. It was characterized in Yersinia pseudotuberculosis. Members are homologous to eukaryotic members of solute carrier family 14, a family that includes urea transporters, and to bacterial proteins in species with no detectable urea degradation system. [Transport and binding proteins, Other].	1.81281e-82
NZ_CP041727.1\|WP_002478734.1\|2447504_2448137_+\|stage-II-sporulation-protein-M	gnl\|CDD\|376676	pfam01944, SpoIIM, Stage II sporulation protein M. SpoIIM is on e of four stage II sporulation proteins that is necessary for the forespore inside the mother-cell to be properly internalized through the breakdown of peptidoglycans trapped between the membranes of the septum separating the forespore and the mother-cell. The four proteins working in sequence are SpoIIB, pfam05036, SpoIIM, SpoIIP, pfam07454, and finally SpoIID, pfam08486. D, M and P are in a complex with each other and the complex assembles in a hierarchical manner such that M, which serves as a membrane anchor, recruits P to the septum and P, in turn, recruits D to the septum.	1.10167e-06
NZ_CP041727.1\|WP_002460241.1\|2435400_2435853_-\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	4.53278e-58
NZ_CP041727.1\|WP_002478741.1\|2454890_2455421_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.27717e-52
NZ_CP041727.1\|WP_002478726.1\|2435865_2437581_-\|urease-subunit-alpha	gnl\|CDD\|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
NZ_CP041727.1\|WP_002478733.1\|2446337_2446982_+\|DUF443-family-protein	gnl\|CDD\|273508	TIGR01218, conserved_hypothetical_protein, tandem five-transmembrane protein. Members of this family of proteins, with average length of 210, have no invariant residues but five predicted transmembrane segments. Strangely, most members occur in groups of consecutive paralogous genes. A striking example is a set of eleven encoded consecutively, head-to-tail, in Staphylococcus aureus strain COL.	1.10635e-29
NZ_CP041727.1\|WP_002478731.1\|2440417_2442193_+\|oleate-hydratase	gnl\|CDD\|237575	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional.	0
NZ_CP041727.1\|WP_002478738.1\|2451864_2452500_+\|DUF443-family-protein	gnl\|CDD\|335700	pfam04276, DUF443, Protein of unknown function (DUF443). Family of uncharacterized proteins.	5.1115e-48
NZ_CP041727.1\|WP_002478742.1\|2455847_2456459_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	1.24822e-08
NZ_CP041727.1\|WP_002478740.1\|2453995_2454847_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.64264e-27
NZ_CP041727.1\|WP_002478727.1\|2437580_2437988_-\|urease-subunit-beta	gnl\|CDD\|237302	PRK13201, ureB, urease subunit beta; Reviewed.	1.96761e-87
NZ_CP041727.1\|WP_002478728.1\|2438000_2438303_-\|urease-subunit-gamma	gnl\|CDD\|183913	PRK13241, ureA, urease subunit gamma; Provisional.	3.1122e-64

>NZ_CP041727.1|WP_002478733.1|2446337_2446982_+|DUF443-family-protein
MKHVTIDSIKNNSKYKIIHDGEKHYVIDLNRNKLTYIFPLLNYLLPHRLMEISDDAYFSLTTVQQSVESKVKNMMITLIGIVILFIYYRANVVDNFFLKHYPPLIIIALMVLIFIIKWLIDKRKRKRLNIEQIETEKRAYIFPEIFTMVISIILYVIAVVSFVFLSFKIFGSMGEPHLNSNVLIIMLAIILSFDQLLYSNSETSGKMSHIKVKA
>NZ_CP041727.1|WP_002478732.1|2445201_2446107_+|EamA-family-transporter-RarD
MNSNIEFKKGVLFALGAHLLWGILPIYWRLIGNISAFEILAYRIILSMIFMIIMIYILKQSTAFKRDLTHLFATPIQLIAIIVAGYVITLNWGTFIWAVSNGHVLQTSLGYYINPLVSILLAFIFLKERFNKFESLAIVFAAIGVLYMTIRVGEFPMISLMLAFSFGIYGLLKKLVRVDAMTGIAIECIVTAPAGLIYIIYLWQIHHTSVGINMASFWLLFSGAVTAVPLILFSAGARRIPLSLTGFIQYVSPTIIFLLGIFVFKEPFDIHQFITFIFIWIGIALYSISQYVKMKRNVRPE
>NZ_CP041727.1|WP_002460231.1|2442910_2444647_+|phosphomethylpyrimidine-synthase-ThiC
MKQEMIRFKKNFPASKRIFKKGSDDDIAVPFRQIELSDTQLENDAFHNDPITVYDTAGPYHDDNYDVNIDSGIPQLRKSWIDARQDVESYKGRKIQSIDNGFKKEGHKNYVAHPFQYQPKRAKQGGNVTQMHYAKQGIITKEMKFVAVREQVEPEFVRDEIARGRAIIPNNVNHPESEPMIIGKNFAVKVNANIGNSVVSSSIEAEIEKLVWAIHWGTDTMMDLSTGKNIHSTREYLIRNSPVPVGTVPIYQALEKVNGVAEDLTWEVYRDTLIEQAEQGVDYFTIHAGLLLHYIPLTVDRLTGIVSRGGSIIAQWCLAHHEESFLYTHFEDICKILNQYDVAISLGDGLRPGSIYDANDESQISELKTLGELTEIAWKHDVQVMIEGPGHIPMHKIKENQDLADFYCKEAPFYTLGPLVTDIAPAYDHITSAIGAAQIASHGTAMLCYVTPKEHLGLPNKDDVRDGVVTYKIAAHAADLAKGLPGATVRDDAISKARFEFRWIDQFNLSLDPDRAREFHDETLPSESAKIAHFCSMCGPKFCSMKLSHDIRDSYKEQLAGMKEKAKEFQAAGNKIYH
>NZ_CP041727.1|WP_002478731.1|2440417_2442193_+|oleate-hydratase
MYYSNGNYEAFARPKKPENVEQKSAYLIGSGLASLAAACFLVRDGQMDGAKIHVLEELAKPGGSLDGDELPMKGYVVRGGREMENHFECLWDLFRSIPSLEVEGASVLDEFYWLNKEDPNYSRCRVIEKRGHQLPTDGDFTLTKQAIKEMIDLCLMTEEDLNDVMISEVFSKDFMNSNFWIYWKTMFAFEPWHSAMEMRRYLMRFVHHIGGLADFSALKFTKYNQYESLVLPMIAYLESHGVQFEYDVQVLDIKVDVTTTEKVAREMKLKRQGKEETMLLTPNDLVFVTNGSITESSTYGDNETPAPPTKVTGGSWNLWRNLAKQSPEFGHPEKFYQDLPEKSWFVSATATTNNKRIIDTIESICKRDPLAGKTVTGGIITVNDSAWQMSFTVNRQQQFKAQPKDEVSVWIYALYSNVKGDYINKPIVECSGNEICQEWLYHMGVPTNQIKDLAQNQCNSIPVYMPYICSYFMPRAIGDRPLVVPHQSRNLAFIGNFAETERDTVFTTEYSVRTAMEAVYQLLNIDRGVPEVVATEFDLRVLMDAMYELNDGKGLVELVEQKKLKQVALNAFLKKIKGTYIEQLLIQHKLL
>NZ_CP041727.1|WP_002478730.1|2439626_2440214_-|TetR/AcrR-family-transcriptional-regulator
MNKQDLRVQKTHQALMTAFHQLLKTKTFEQITIQDLCHKANIRRSTFYRHFNDKYHLLNHVVGILIDHFRELYLPEINPDNPRQFFEKLMTDILTFIHHHKDTVRSVITLNFYGEVYNIFYDQIYAAVKKQIDFDKQNGQFYVDVTIYSEFLTGGILSVITNWIQHGQQQPIDKVVNEIVTIICGAREIHLKKLK
>NZ_CP041727.1|WP_002478729.1|2438510_2439407_+|urea-transporter
MEKIDVFLKNIAQVVLINSKWTGLFILIGLFVADWELGLAAVLGSALSVLLAPYFNYSAEEIHNGLAGYNSVLTAIGLALFLQSTTIAWIVLVISVILTLPLGAATREFLKSYGVPMLTFPFVLMTWLILAMTTQFSTLSVTVDILPLHVKHPVISHHHISWLSGITTNFSEIFLVTSIGGSVLILIGIFLGSIKGGVYALISSIFAVACIALLGGDYPTIANGLYGYNAVLTGIALGATFMTKLNKYIAVITGLLLTIVMHGALATLLTPVGLPILTAPFIFATWLVLFAGKMSNEN
>NZ_CP041727.1|WP_002478728.1|2438000_2438303_-|urease-subunit-gamma
MHFTQREQDKLMIVVAAEVARRRKARGLKLNHPEALALISDELLEGARDGKTVADLMSYGKTILNEEDVMDGVASMITELEIEATFPDGTKLITVHHPIV
>NZ_CP041727.1|WP_002478727.1|2437580_2437988_-|urease-subunit-beta
MIPGEIKVKNTDIEINQGHPETVLTVKNTGDRPIQVGSHFHFYEANKALKFEREKAYGKHLDIPAGAAVRFEPGDEKKVQLVEYAGHRNIYGFRGMVNGKIDETRVYRPTGEHDSYAGVFNDQGEENLNKKGGQD
>NZ_CP041727.1|WP_002478726.1|2435865_2437581_-|urease-subunit-alpha
MSFKMTQSQYTSLYGPTVGDSVRLGDTNLFAQVEKDYANYGDEATFGGGKSIRDGMAQNPNVTRDDRKVADLVLTNALIIDYDKVVKADIGVKNGYIMGIGKAGNPDIMDNVDIIIGATTDIIAAEGKIVTAGGIDTHVHFINPEQAEVALESGITTHIGGGTGASEGTKATTVTPGPWHIHRMLEVAEALPINVGFTGKGQAVNHTALIEQIHAGAIGLKVHEDWGATPSALRHALDVADEFDVQIALHADTLNEAGFMEDTMAAVKDRVLHMYHTEGAGGGHAPDLIKSASYPNILPSSTNPTLPYTQNTVDEHLDMVMITHHLNASIPEDIAFADSRIRKETIAAEDVLQDMGVFSMISSDSQAMGRVGEVIIRTWQVAHRMKEQRGGLEGDTEYNDNHRIKRYIAKYTINPAITHGISDYVGSIESGKLADLVMWDPIFFGVKPELVVKGGLINSAVNGDANGSIPTSEPQKYRKMYGQYGTNIQHTAITFVSTTAYENGIYNLLNLKRMVRPVHGIRNLSKKDMKHNHATPKLDVDPQTYEVFVDGEKITSEAATELPLTQRYFLF
>NZ_CP041727.1|WP_002460241.1|2435400_2435853_-|urease-accessory-protein-UreE
MIIEEIQGNIANLTAEEKSKHIEKVYLENSDLVKRIQRVTTDHGTELGIRLRQPIDLQYGDILYQDETNMIVVDVNSEDLLVIQPRTLQEMGDIAHQLGNRHLPAQFTETEMLVQYDYLVEDLLKTLGIPYSHEDRKVNKAFRHIGHSHD
>NZ_CP041727.1|WP_002478734.1|2447504_2448137_+|stage-II-sporulation-protein-M
MINIGGDTLIKSIDKNVYKHALKVFALATIILMITTVITYFCHPAINDVKHLGNSSTNISSNPQGLSKVWHFIVNNGCFVPVQMFILALIPIPFLYMLNIVISVIIPGIMFGIFLNFDLHKAFTAIIAYIPHYTLEIMAYCILASGLYMLNKAIVRKVTNLFRKKKKDNYPFKKSLFKVIKIYFIFTLPLIILAAFTETYVADWIYQLMN
>NZ_CP041727.1|WP_002478735.1|2448464_2450078_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MNILNASNISKKYTEDILFDHIKITLNSGDTLGLVGRNGEGKTTLLKLLSGMERPSTGVISWKKDIKIGYLNQIPDYEKSESVYQCIKSVFKELDTISKQLETIETKMIEERENINSLVARYGELQTYYEENGGYEIDAKIRKVTHGLNIAHLLKAKWGDLSGGERTKVGIAQMLIKPTDLLLLDEPTNHLDVKSIEWLASYIKNNDSATVIVSHDRYFLDETVNQIIEIDQKKLHFYNGNYSYFVEERDKRLLIEFEAYKTQQKKIKKMKESIKQLRTWASQAKPPNAAMFRRAKSMEKALNRIQRLEKPLLDSKKMHITLEEGMNVSNRVIEMENVTKAYDDVLFRNVNMLIRRGEHVAIIGDNGTGKTTLLKIILGLTSIDKGSIKTASNLKIGYLSQHEFERDGNDTLLHTFRKKVNVSEDQARHILAHFMFYGKDVFKKVNELSGGEKIRLRWAQLVNTDYNLLVLDEPTNHLDIDAKEIIEDALLDFNGTIITVSHDRYFLNKLFNTTYLLKNKTLEKFEGNYDYIKEKML
>NZ_CP041727.1|WP_002478736.1|2450278_2450656_-|hypothetical-protein
MKKRIFLCLIFLLPIDFITIALDYHFQVGLLYVYIPALILPVILTFCFKWEKDFRLILSMKVCRFIISWGLAKIFIDFMKSAEYYEMFDGAGAIISLVIGEEIIFIIAITVFLLSKEIKKLFITQ
>NZ_CP041727.1|WP_002478737.1|2450673_2450886_-|hypothetical-protein
MSSNFVIVIITILMIVCIDAIFYYVSKIKHAPKKILITMVAFFVSIFLVFLFIIAILEIGAMVDTGQLFV
>NZ_CP041727.1|WP_041612352.1|2451360_2451666_-|hypothetical-protein
MNKAWYKRIFNPVNYCQYLVHSLKHNYVLGSFRSDLPARLGLEPFLLFKKTYKIKPTRPATSMPHILGIHMLCIILSKILVVKESKTALSINNINQLNVFI
>NZ_CP041727.1|WP_002478738.1|2451864_2452500_+|DUF443-family-protein
MENVYTIYKNPRYKIIQKDNRYLMIDLEQNWYSYLCPMLNWFIPIKYTELSYKEFNNLNIFNNQNQSNQGLIAAGIGVTISVLLRSFIGLMNINISQIWMFVLFLIGFVGVIALRLSIRKKLNHPAFNKNSTQKVMLIPSFKNMVLVVFCYLISIYLIVGLFYMMVIENIQNIWIYICWLGIFFVFSFMNMASISDRKVHAKIKNIERQVK
>NZ_CP041727.1|WP_002460218.1|2452707_2453856_-|MFS-transporter
MMKKVWVLTIGMFALGMDAYIVAGLIPAIGDNFNKNSAEVGQGVTVFTLFFAISAPIFSTLLAKNEVKNILILAISVFSLANLITALAPNYAIYIISRAIAGLGAGIFSPIAVSSSSHLVSKKHKGKAIAFTVGGMSVGTVVGVPLGLEVSKYTNWRFSILIIVLIGLIGLMSILKYLPRFKVQAPPNLKSRFKLFLDKHVLSVVFVTLCAAIASLGLYTYLADIIKESGNTEYLTCYLTAWGVGGLIGSFGIGFLIDKFKNPAVLMLIILFALALSFALLNVTIQVPFLNFIPFILWGAMGWATQAPQQHILLQNHANHGGAAVALNSSINYLGSALGSALGGIILLKFINTNMLIYSAIIITVIGIMLQIMNITIDRKNN
>NZ_CP041727.1|WP_002478740.1|2453995_2454847_+|LysR-family-transcriptional-regulator
MNFEYIQDFIRVAEYNSINKASQELNISTPALSKRIKSVEAYFNCHLFYRTSKGIFLNEEGKLVFNTFREMQHSIADLKKQLNISFDSKWKIGVIPSFSLTNKYKNRGFDEIANLIIEDSTSILIEELSKGNIDLLIGDVSKLNNRDIYRKRLYSENFMVIYNDDNKFTESSKIEINELLSEKIYIQNPPCDTYDFIKNRSMEDKLNLNYNKHFESVIANIKAGNGITLMPVSLTSRISNMNLFQKVLSGYKRDIGIASYDQRKIIKIYDFLLKNLEEERNQK
>NZ_CP041727.1|WP_002478741.1|2454890_2455421_+|N-acetyltransferase
MDFTIRTEEKEDYKFTEEVVKNAFANESYSDQSEHRLVANLRNSDAFVPDLSLVAVDKNKMIGHILLTKIVIVNDEKNTESLALAPVSVLPDYQNKGVGRSLIQKSLEIAKKLNFGSVIVMGHAEYYPKFGFKQASNWGIQAPFDVPDELLMAIELKKNALDEASGVIQYSSAFFE
>NZ_CP041727.1|WP_002478742.1|2455847_2456459_-|helix-turn-helix-transcriptional-regulator
MDKSRVAKIIKSKSMTQENLAEKACVTVRTIQRIEAGEEVSSKTLKSISNALDVTINELFESIDSPDKEAEIMEISKEQQKQFKYRQNEIFTIRLIIFGVIFLLLAFFAIFISELNGLKQEIFGIIWLFTLFLSLAIAHYFLNVFISKKLDEKYPMTLGMNNKRSHRRNESASNGWDFLSRNWWMIFPIGGFLSWLIPQLLGK

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Crispr_ID: NZ_CP041727_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041727_10

2499842-2499928

Orphan

Consensus_repeat	Method
GCAAGTTGGGGTGGGGCCCCAACACAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041727_10

>merge|NZ_CP041727|10|2499842-2499928|CRISPRCasFinder
GCAAGTTGGGGTGGGGCCCCAACACAAAGAAATGCAACAAGCATTTCCACGAACAACGCAAGTTGGGGTGGGGCCCCAACAAAAAGA

>NZ_CP041727|10|9|2499842-2499928|CRISPRCasFinder
GCAAGTTGGGGTGGGGCCCCAACACAAAGA	AATGCAACAAGCATTTCCACGAACAAC
GCAAGTTGGGGTGGGGCCCCAACAAAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041727.1\|WP_002478772.1\|2496488_2497040_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP041727.1\|WP_002478780.1\|2506757_2507768_+\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185696
NZ_CP041727.1\|WP_002478771.1\|2494841_2496047_+\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP041727.1\|WP_002478773.1\|2497832_2499797_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP041727.1\|WP_002478778.1\|2502971_2503919_+\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213365
NZ_CP041727.1\|WP_002460180.1\|2489059_2489734_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP041727.1\|WP_002460174.1\|2492807_2493269_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP041727.1\|WP_002478776.1\|2501990_2502380_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002478779.1\|2505141_2505750_-\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|187726
NZ_CP041727.1\|WP_002478767.1\|2489861_2490923_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP041727.1\|WP_002460156.1\|2505987_2506203_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NZ_CP041727.1\|WP_002478769.1\|2491678_2492632_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NZ_CP041727.1\|WP_002460158.1\|2503964_2505017_+\|type-2-isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|235465
NZ_CP041727.1\|WP_002460169.1\|2497172_2497820_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP041727.1\|WP_002478781.1\|2507843_2508497_-\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP041727.1\|WP_012990759.1\|2501049_2501958_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP041727.1\|WP_012990757.1\|2493366_2494740_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|226987
NZ_CP041727.1\|WP_002478768.1\|2490919_2491588_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP041727.1\|WP_002478774.1\|2500133_2500841_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223964
NZ_CP041727.1\|WP_002478777.1\|2502385_2502853_-\|thioesterase	unknown	unknown	gnl\|CDD\|372545

Protein	Function_ID	Function_description	E-value
NZ_CP041727.1\|WP_002478772.1\|2496488_2497040_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.8895e-08
NZ_CP041727.1\|WP_002478780.1\|2506757_2507768_+\|aldose-1-epimerase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	2.40518e-86
NZ_CP041727.1\|WP_002478771.1\|2494841_2496047_+\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.29274e-79
NZ_CP041727.1\|WP_002478773.1\|2497832_2499797_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	8.28346e-138
NZ_CP041727.1\|WP_002478778.1\|2502971_2503919_+\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213365	cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family. This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the TmCorA-like family are found in all three kingdoms of life. It is a functionally diverse family which includes the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, and three Saccharomyces cerevisiae proteins: two located in the plasma membrane: the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.57866e-137
NZ_CP041727.1\|WP_002460180.1\|2489059_2489734_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.74683e-75
NZ_CP041727.1\|WP_002460174.1\|2492807_2493269_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.40067e-15
NZ_CP041727.1\|WP_002478779.1\|2505141_2505750_-\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|187726	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair. Alkyladenine DNA glycosylase (AAG), also known as 3-methyladenine DNA glycosylase, catalyzes the first step in base excision repair (BER) by cleaving damaged DNA bases within double-stranded DNA to produce an abasic site. AAG bends DNA by intercalating between the base pairs, causing the damaged base to flip out of the double helix and into the enzyme active site for cleavage. Although AAG represents one of six DNA glycosylase classes, it lacks the helix-hairpin-helix active site motif associated with other BER glycosylases and is structurally distinct from them.	3.79179e-74
NZ_CP041727.1\|WP_002478767.1\|2489861_2490923_+\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	3.96093e-11
NZ_CP041727.1\|WP_002460156.1\|2505987_2506203_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	2.90932e-26
NZ_CP041727.1\|WP_002478769.1\|2491678_2492632_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	1.00927e-46
NZ_CP041727.1\|WP_002460158.1\|2503964_2505017_+\|type-2-isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|235465	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional.	5.83852e-179
NZ_CP041727.1\|WP_002460169.1\|2497172_2497820_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	5.91566e-37
NZ_CP041727.1\|WP_002478781.1\|2507843_2508497_-\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	1.21515e-67
NZ_CP041727.1\|WP_012990759.1\|2501049_2501958_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.46957e-45
NZ_CP041727.1\|WP_012990757.1\|2493366_2494740_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	6.36431e-85
NZ_CP041727.1\|WP_002478768.1\|2490919_2491588_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	8.93373e-88
NZ_CP041727.1\|WP_002478774.1\|2500133_2500841_-\|hypothetical-protein	gnl\|CDD\|223964	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only].	0.00455323
NZ_CP041727.1\|WP_002478777.1\|2502385_2502853_-\|thioesterase	gnl\|CDD\|372545	pfam13279, 4HBT_2, Thioesterase-like superfamily. This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.	4.50419e-30

>NZ_CP041727.1|WP_002478773.1|2497832_2499797_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MTTTFIIGYIVVALIFIGLINFFVVKSRKKNKNKGQFKEQRNLQDSKSQQSKFKISDLDKEEMSKNGFNQSKSNDIEDDKRKHQFNDTTEHIATTETGDTSDKLQHADETSHGVNQGDDAHDAINPNSVEGRVNEQIKNQNEDFVFGKNVTRAQIIAAMLFGMFIAILNQTLLNVALPRINTEFNISASTGQWLMTGFMLVNGILIPISAFLFNKYSYRKLFIIALTLFTLGSLVCAISTNFPIMMTGRVLQAIGAGILMPLGSNVIVTIFPPERRGVAMGTMGIAMILAPAIGPTLSGYIVQNYHWNVMFYGMFILGLIAIIIGFIWFRLYQRTTNPKADYQGVVYSTIGFGALLYGFSEAGNKGWGSTEIIVMFILGAVFITLFVIRELTMKAPMLNLEVLKSSTYTLTTIINMVVMMSLFGGMILLPIYLQNLRGFSALDSGLLMLPGALVMGALGPVAGKLLDTVGLKPLALFGIAVMTYGTYELTKLNLDTPYMHIMSIYIIRSFGMAFVMMPLMTAAINALPPRLISHGNAFLNTMRQLAGSIGTAILVTVMTTQTTQHFNAFSTELDKTNPVVQDHMRELATQYGGEQGAMKVLSMFVQKISSVDGINDAFWIATALSILAFILSLFLKSKKKADAEHDKMMSKEHI
>NZ_CP041727.1|WP_002460169.1|2497172_2497820_+|HlyD-family-secretion-protein
MKKLILINVITIVVLAVIGIIGFHFYNNATSYVTTDNAKVDGKQIKIASPTSGQIKSFDAKEGDKLSKGDKVATVVGKSESGDTQSMDIKMPQNGTIVKTDGAEGSMAQAGNPIAYAYNLDELYITANVDEKDVSSIEKGNDVDVTIDAQGTTVSGKVEHVGQATANSFSLMPSSNSDGNYTKVSQVVPVKISLDSTPSKDVVPGMNAEVKIHKN
>NZ_CP041727.1|WP_002478772.1|2496488_2497040_-|TetR/AcrR-family-transcriptional-regulator
MKNRAKYRIIFNFVHLLEQYPFEAITTKLICAHSNVNRSTFYANFKDKYDLYDIIQNYHKKKYINLLDTLYNDFEDVKSNNMKIHKFFVIVLKYIQRKKAFFHAVFITHPNREIAIEYFQLTKVKYEKILTDYNTTIENKSAFVTYTLGGQTAILLSWLKDGCQESPHKIADILLANTIKLQR
>NZ_CP041727.1|WP_002478771.1|2494841_2496047_+|multidrug-effflux-MFS-transporter
MSSQQRDKQSLIFIIILGALTAIGPLSIDMFLPGLPEIKHDFNTSTAISQLTLSLFMIGLALGNLFVGPISDAIGRKMPLVVSMFIFTLASFSIIFVSNIWVMIVLRFVQGLTGGASAVISRAIASDLYSGKALTKFLALLMLVNGIAPIIAPTLGGIILSVSIWRTVFIVLTVFGILMLLGSALKVTESLHIEQRETSGIKVIFKNFGKLLATPKYVLPMLIQGVTFIMLFSYISASPFLIQKIYGQSPFAFSLIFASIGVTLIISSQLTGKLVDYVDRQQLLRILTVIQIVGVIIVGFVLTNHWSFWILIIGLIVLVAPVTGVATLGFAIAMDERTTGSGSASSLLGLLQSLLGGLVTPLVNLKGEYNSTPYLIIISIAALALMMLQIVNYFVFKESTE
>NZ_CP041727.1|WP_012990757.1|2493366_2494740_+|zinc-ribbon-domain-containing-protein
MTTCPKCGEEIKNEQTNHCPNCGATINDNGENSSNQASNEATIRLKKIVPWAIGGFIIILLIIVFVLLKNFNSPDAQAKILINAIDNDDSQKVATMLTTRDNKVDETEAQTYIKYIKKEVGMTKFIFDIRETVEKLNKSETRVAAYLQTRAGENVLRVSKNGRRYLIFNNMSFTPPTKEVTVKPKEDTKYEFKDDGRNKKVVAEADKETTIGKFIPGNYAIDAKKITDNGVFTGYLKFDFKYANSNTVDVNEDFNEAKVHVKIKNGEQLSRSSLKVKINDRTWDYGNAKVYGPYPKNKDITVSATGKVKGKTFETETKSIKADKLTDNTDVTVSFDDDDISDYIEKKEKEDNSLKNKLGSFFSSYSLSLNQAIAQSDFSLVHSFLKKGSSSYDKVRKNIASNTSARLVSPIILSVDQTGDTIKAKVQGFGLNGLPVVKNYVLEESKDDLGYKLVKVD
>NZ_CP041727.1|WP_002460174.1|2492807_2493269_+|MarR-family-transcriptional-regulator
MSTISKSHIDFMKQFIDDVNTLTAKLFKDIQNEYGISVEQSNVLRLLSNHQALTITEITEKQGVNKAAVSRRIKKLIDAKLVCLEKPNSHIDQRLKYIKLSTKGQQYIDESKNILSRIANDMVKDFSSNEIEQALNVLCIIDSRIKQFNKQFD
>NZ_CP041727.1|WP_002478769.1|2491678_2492632_-|YdcF-family-protein
MLSISIAFLTFICIVPTLFNSQTFVSLRLYFISVILAFSFVLINLWQQSFVLCYFSLFIVLVTVLFVKHFYLIKQQQGRQLLQELMKYIYRLLLFSCACAYISLIHVPVFTGLFIWFSLIAISTLTTFALYLCFSSAFGRMTNHCTFDGIIVLGAGIFTEAVTPLLASRLNRALSIYNQQSHCTIIVSGGQGKDEPISEALAMKRYLLSHGVPEQSIIMEAHSTNTAENFLYSKSIIDAMTPKPNKLLVVTSQFHILRALRFAQKFGLPVQGIGSSTPCHLLARSLIRDFLGLMHQYKLLLTLYFALLFISAILLNL
>NZ_CP041727.1|WP_002478768.1|2490919_2491588_+|ABC-transporter-ATP-binding-protein
MTLKVANLRKTFGQGEAKTQVLKGIDFEIADGEFVILNGASGSGKTTLLTMLGGLLTPTEGTIEVNDKPLFSTQSHNSALRLTDIGFIFQAAYLIPYLSVIEQLTLVGKEAGQSHNDAQQRARTLLSDIGLAHRLDAYPHMLSGGEKQRVAIMRAFMNQPKIILADEPTASLDAKRAVQVVDMIKTQIKSNHMMGIMITHDERLFAYADRVIQLYDGQIVPG
>NZ_CP041727.1|WP_002478767.1|2489861_2490923_+|ABC-transporter-permease
MMKLAWREITFYKFRYILITLIIILLASMVLFITGLAQGLARENISFFEQQHAQHYVMQKMSQPQLEKSNISAQDTSKVRTILQQQPTRLKPQVLTVNQDSLDVMTVTTDKTFKPQLQAGTYPKKAHDIAINNKLTAKGIQIGDKVHFKGHSTHYHVTGILENTMYAHSSMLWMTQEGFEQLNKQAATVFPVKDLNEEQRSQLADDSKLELVKPDTLQANIASYQAEQAPLNLMVMSLFVITAIVLSAFFYVMTIQKISQIGILKAIGIKTRHLLIALIGQIMLITLFGVSIAVGLIWSLTFVMPVTMPFYIHLTNILVILGGFVLVALIGALLSMIKVLKVDPIEAIGGNAS
>NZ_CP041727.1|WP_002460180.1|2489059_2489734_-|response-regulator-transcription-factor
MVNCLIVDDDQTILDYVASHLNNEGYHTYTKPSGTAALQFLEQQTVDIAIVDIMMAGMDGFELCQQIKLDFDLPVIMLTARDALTDKERAFLSGTDDYVTKPFEIKELIFRIKAVLRRYQINAEHIIQLGNLTLNDNYMEVQVDHKTMTLPKKEFQLLYMLTSHPKQVFLRDTLIEKVWGFDYEGDERTLDVHIKRLRQRLSKLAANVTITTVRGQGYKVEAHV
>NZ_CP041727.1|WP_002478774.1|2500133_2500841_-|hypothetical-protein
MEQSRSQHPTYQRTQYQPDYQLQTTKKRSWVSIIIHFIVLVLTAISGYSMYKQPLFIFGLKDTEVGYTQLKNFKQSLSNLSELSINSDQVTKLNGLGLSDIAKQLEALSIKPEHIEQLKSVIEQINMLFNIFFGLCILSLILTILTLLFNRTLLKLLNFLSIASMLAIVVYFMIAIDYLAQRIAKLLNNAYVQITPDQVIIEADATHNAIILLICCLALIFLSLFFRSKRQIKRL
>NZ_CP041727.1|WP_012990759.1|2501049_2501958_+|alpha/beta-hydrolase
MRTYMMNRVVNKYLLHNRSIQFKDEGQFNQFMEKRRNANRLKHKQPSTLNVKSNLDKLMLDDMQVFRFNFRHETGKKILYLHGGYNTLQPSPFHWRLMDKLTLATLYEVVLPIYPKAPEFHIDDTFKAIQAVYVQLVDEVGAENIVVMGDGTGGALALSFVQSLIKQQLSMPRKLYLLSPLLDATLSNPEITEKLQQQDQFVNRQGVHDILSVWAAGKPLNNAEISPINGNLEGLPPIVMFGAGKEIYYPDMERLDFYLSEQRQPIEFFRYPKMIHDFSLFPIHESHKVVKQIAQTIDNDLR
>NZ_CP041727.1|WP_002478776.1|2501990_2502380_-|hypothetical-protein
MTKSSIEKIKSYLLDLHDDLKLNLIDMNQTKDMFMNGPSTELLRRALNMSYYQGQKQALDWLQYNVESQDSHTLMTLIEDKLHLLTEQDSKVKNLAIMAKELPEQLSQEAHRDGQRSILKHIKTRIDVF
>NZ_CP041727.1|WP_002478777.1|2502385_2502853_-|thioesterase
MIFTVQGMVQQSQIDHNAHMHDADYNYIFSDAINQFNYTHGLSLAERQALHYTIFTVEEHTTYLAEMSLGEHYIIQLFIYNYDDKRIHFFLKLIKENGTLAATNEVMMLGIDSTTRKAAAFPEPYFTEMTSYYKTQDISQWPKQLGHQIGIPNKG
>NZ_CP041727.1|WP_002478778.1|2502971_2503919_+|magnesium/cobalt-transporter-CorA
MSITIRYQTPHTSLTTVPDIADVPKDATIVWYDFEDATAKENDFLRENFDFNYLEIDDTITGVPRVKYKAYDDYQYIVFHSINSDDYSPRALNVFLKNNVLVTYHHKHFSSLMKVAKWNAYHHDGELDCADIVIHILDMMVDKYFDFVYDIEEKVYNFEDKHVDDALSKKVMDNVFKLRSDLIKIKRVMFPMQELVETIKSEGNLIVDSKHSMYIQHIDDHLIKQSNIIRTSQEMTNEIRENYESYSSFRMNSIMQILTLVSVIFSPLTFIAGVYGMNFDNMPELRWHYSYYICLVVMLVIAIALIIFFRKKRWF
>NZ_CP041727.1|WP_002460158.1|2503964_2505017_+|type-2-isopentenyl-diphosphate-Delta-isomerase
MSNFQREQRKNEHVEIAMAQQDAPASDFDRVRFVHHSIPHIDVAQVNLSTHTSNFKLDYPLYINAMTGGSEWTKQINEKLATVARETGLAMAVGSTHAALRNPDMIESFRIARQVNPEGVIFSNVGADVPVERAVEAVELMEAQALQIHVNAPQELVMPEGNRTFASWMDNIAKMINHVPVPVIIKEVGFGFSKETFKALKDIGVTYVDVSGRGGTNFVSIENERRSNKDMNYLANWGQSTVESLLESQAYQSSLNIFASGGIRTPLDAIKSLALGAKAVGMSRPFLNHVENEGVEQTITFVAQFTTQMQQIMTMLNAPDIEALKQSQLIFDQQLLSWMEQRHIDIDRGL
>NZ_CP041727.1|WP_002478779.1|2505141_2505750_-|DNA-3-methyladenine-glycosylase
MDFIVPSTIDTAKALLGVKVIYNDDGQIYSGYIVETEAYLGFDDRAAHGFGGKQTPKVTSLYQRGGTIYGHIMHTHLLINFVTQQAGVPEGVLIRAIEPVDGIEAMKINRGKYGYELTNGPGKWTKAFHIPRAIDGTLLNVGRLSIDTKNRKYPREIEASARIGIPNKGIWTSKPLRYTVKGNPYVSRIPKKNMRAAIDTWK
>NZ_CP041727.1|WP_002460156.1|2505987_2506203_+|helix-turn-helix-transcriptional-regulator
MKEVVTRLNKVKVYRGYSKISQLELARAVGVSRQTINMIENGKYNPSLKLCVNIAKTLGTTLDTLFWENDT
>NZ_CP041727.1|WP_002478780.1|2506757_2507768_+|aldose-1-epimerase
MIVEVEKQRHGIDLIKIDNNETSIVFSNYGARIVAWKFHDNNIVLGNRVEADEFYLNNPLKFGATIGRYSGRIEAGAFKLNQDRYQLEQNDGLNHIHGGSNGCDQVLFDYDIVEGISDVKVIFRAKLNASDDGYPGDLALKVIHHYDIEHRWTITYEAETTATTIFNPTNHVYFNLNRDNNVIDNHQIHAKDLKMYLLNRQHFLLNDTPINLASQFGSDHITFQKIFQAHQDDIKQQMERYQGLDHPFELSEQTLSVENGEFKLQIDTDMPYVVIYTMNHPETWESQLNIYKPHSGFTLETQFLPNDINYFGQQAPSILRAGQQFSSTTSYQISEQ
>NZ_CP041727.1|WP_002478781.1|2507843_2508497_-|MOSC-domain-containing-protein
MIPVVAISTGKIQHLPYSTKKPMISALDKIPFTGRMWLSIDGFSEDEQAYKDHGGPHKAVCCFSQSNYDMYKEDLAQLPTYAMFGENVTVKHLDERDVYFGNQYRLGEAILEVSEMREPCWKIQAKYQIPDLVKRMTASGKTGFYFRVIQEGYVSQEDNLELLTQANKASRLSVYELNDIYYNDRKNISRISYALNNPYLSPSRREKLSRLYHRACK

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Crispr_ID: NZ_CP041727_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041727_11

2535798-2535877

Orphan

Consensus_repeat	Method
TCGATCAAAGCAAGTTGGGGTGG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP041727_11

>merge|NZ_CP041727|11|2535798-2535877|CRISPRCasFinder
TCGATCAAAGCAAGTTGGGGTGGGGCCCCAACAGAGAGAAATACGAAAAGCATTTCGTCGATCAAAGCAAGTTGGGGTGG

>NZ_CP041727|11|10|2535798-2535877|CRISPRCasFinder
TCGATCAAAGCAAGTTGGGGTGG	GGCCCCAACAGAGAGAAATACGAAAAGCATTTCG
TCGATCAAAGCAAGTTGGGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041727.1\|WP_002478796.1\|2534651_2535425_+\|autolysin	unknown	unknown	gnl\|CDD\|226656
NZ_CP041727.1\|WP_002478792.1\|2525464_2526352_-\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_CP041727.1\|WP_080611380.1\|2542628_2542811_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002478802.1\|2539719_2540793_+\|octopine-dehydrogenase	unknown	unknown	gnl\|CDD\|376763
NZ_CP041727.1\|WP_002478798.1\|2537171_2537486_-\|multidrug-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987
NZ_CP041727.1\|WP_002478794.1\|2528646_2529423_+\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238815
NZ_CP041727.1\|WP_002478799.1\|2537485_2537818_-\|multidrug-resistance-protein-SMR	unknown	unknown	gnl\|CDD\|224987
NZ_CP041727.1\|WP_002478805.1\|2544245_2546222_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP041727.1\|WP_002492284.1\|2536149_2537103_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240655
NZ_CP041727.1\|WP_002460124.1\|2533745_2534216_+\|DUF1641-domain-containing-protein	unknown	unknown	gnl\|CDD\|225283
NZ_CP041727.1\|WP_002478791.1\|2524062_2525451_-\|permease	unknown	unknown	gnl\|CDD\|181971
NZ_CP041727.1\|WP_002478800.1\|2538230_2538767_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP041727.1\|WP_002478804.1\|2542937_2543675_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP041727.1\|WP_002478801.1\|2539065_2539488_-\|DUF4870-domain-containing-protein	unknown	unknown	gnl\|CDD\|225833
NZ_CP041727.1\|WP_002460129.1\|2526348_2527398_-\|DUF871-family-protein	unknown	unknown	gnl\|CDD\|377567
NZ_CP041727.1\|WP_002478803.1\|2540835_2542227_+\|Na+/H+-antiporter-NhaC	unknown	unknown	gnl\|CDD\|188097
NZ_CP041727.1\|WP_002460123.1\|2534398_2534632_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041727.1\|WP_002460125.1\|2530791_2533746_+\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|225918
NZ_CP041727.1\|WP_002478793.1\|2527566_2528256_-\|HTH-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP041727.1\|WP_002460126.1\|2529541_2530492_+\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|181811

Protein	Function_ID	Function_description	E-value
NZ_CP041727.1\|WP_002478796.1\|2534651_2535425_+\|autolysin	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	4.35673e-77
NZ_CP041727.1\|WP_002478792.1\|2525464_2526352_-\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	3.78745e-173
NZ_CP041727.1\|WP_002478802.1\|2539719_2540793_+\|octopine-dehydrogenase	gnl\|CDD\|376763	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain. This group of enzymes act on the CH-NH substrate bond using NAD(+) or NADP(+) as an acceptor. The Pfam family consists mainly of octopine and nopaline dehydrogenases from Ti plasmids.	1.26055e-49
NZ_CP041727.1\|WP_002478798.1\|2537171_2537486_-\|multidrug-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	4.36019e-24
NZ_CP041727.1\|WP_002478794.1\|2528646_2529423_+\|inositol-monophosphatase-family-protein	gnl\|CDD\|238815	cd01637, IMPase_like, Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.	2.83764e-70
NZ_CP041727.1\|WP_002478799.1\|2537485_2537818_-\|multidrug-resistance-protein-SMR	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	7.07691e-20
NZ_CP041727.1\|WP_002478805.1\|2544245_2546222_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	7.03158e-16
NZ_CP041727.1\|WP_002492284.1\|2536149_2537103_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240655	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	0
NZ_CP041727.1\|WP_002460124.1\|2533745_2534216_+\|DUF1641-domain-containing-protein	gnl\|CDD\|225283	COG2427, COG2427, Uncharacterized conserved protein [Function unknown].	1.85067e-26
NZ_CP041727.1\|WP_002478791.1\|2524062_2525451_-\|permease	gnl\|CDD\|181971	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed.	3.2639e-102
NZ_CP041727.1\|WP_002478800.1\|2538230_2538767_-\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	9.90228e-33
NZ_CP041727.1\|WP_002478804.1\|2542937_2543675_-\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	5.5132e-32
NZ_CP041727.1\|WP_002478801.1\|2539065_2539488_-\|DUF4870-domain-containing-protein	gnl\|CDD\|225833	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown].	3.76647e-25
NZ_CP041727.1\|WP_002460129.1\|2526348_2527398_-\|DUF871-family-protein	gnl\|CDD\|377567	pfam05913, DUF871, Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.	1.19472e-94
NZ_CP041727.1\|WP_002478803.1\|2540835_2542227_+\|Na+/H+-antiporter-NhaC	gnl\|CDD\|188097	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds].	1.20653e-120
NZ_CP041727.1\|WP_002460125.1\|2530791_2533746_+\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|225918	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only].	0
NZ_CP041727.1\|WP_002478793.1\|2527566_2528256_-\|HTH-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.43763e-29
NZ_CP041727.1\|WP_002460126.1\|2529541_2530492_+\|LytR-family-transcriptional-regulator	gnl\|CDD\|181811	PRK09379, PRK09379, LytR family transcriptional regulator.	1.04716e-92

>NZ_CP041727.1|WP_002478796.1|2534651_2535425_+|autolysin
MRKKRKKLKKHYIITILAITSILLLYKGQLFFISNQQVTFDEAVRLQTSSEMINTINNNGEFTAANRHQVESAMRISFRDTEFKYMELTHPIKMSEKEVNQMLHNKGILDGHGQQFLAAQKQYKINVIYLVSHALVETGEGQSTLAKGITDGQQRYYNFFGIGAFDSNAIQTGKSYAKTHHWTSPNKAIIDGASFIRSHYFDQGQVSLYQMRWNPANPAHHQYATDIYWDEQIANYMAHFYKQYGIKKDRIQRDFYR
>NZ_CP041727.1|WP_002460123.1|2534398_2534632_+|hypothetical-protein
MIKRIMIASNLCLVAGLICLFIMQFMLAISMFAISLTMSLVLFNVLLRERKGLKWAINGSFLFVVLVIVVAYFIMTK
>NZ_CP041727.1|WP_002460124.1|2533745_2534216_+|DUF1641-domain-containing-protein
MAERITNIKRLKKSDEQIKLENLTEVTDAIADNKDSILKAIKLIKVLDDAKLLDALNGAIKGRQVIINKFAVELNKDIYTGLLSNMASLVFLLGDLEVKDLSAFLAKVNKGLHVANQASPNAKTSIRHLLGVLKDDDMNRSLTYMLNMLKGMSREH
>NZ_CP041727.1|WP_002460125.1|2530791_2533746_+|formate-dehydrogenase-subunit-alpha
MQEHLIVTLDGTDYLVEPGTNLLEFIKSRNTFVPSICYNESMGPIQTCDTCMVEIDGQIERACSTTIDRPMTVNTENNEVKSSQKEALDRILEKHMLYCTVCDYNNGDCEIHNTMDEWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWDNDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGYMTDTEPGSLAAMIDLTKKAEPGYGPLFAISDSEAEMRKERINKTKTVCTYCGVGCSFEVWTKDREVLKVQPSHDSPANKVATCVKGKFSWGHINSDQRLTKPLVRKNGEFHEVEWDEALKVVVDNFSQIKNQYGGEALAFIASSKGTNEESYLMQKLSRQVFGSNNVDNCSRYCQAPATKGLFRTVGHGGDSGSIEDLEKAAMTVLIGTNTAEAHPVIASRMKRAQKLFGQRSHVFDIRKHEMAERADEFYQPKPGTDLVWLGAATKYIIDHDLHDKAFIDEWVDNFDDYYTSLEPFTMEFAEEATGIPKERLIKFAEEAAKAETVAICWAMGITQQDIGSDSSTAISNFLLATGNYRKPGSGAYPLRGHNNVQGASDMGSMPDQFTGYQRVVDDDVRAKFEKEYGVTLNPTPGRDNHQMMEGIHNDEIHSLYLYGEDTGIVDSNINFVQSALEKVDFLVVQDEFLTFTASYADVVLPASPSLEKDGTFTNTERRIQRINQALTPLGDSKPDWVIFQMIAKEFGFDWNYNYPGDIMDEIARLTPLYAGVSYDRLQGFDSLQWPVHEDGTDEPLLYLEGFNFENKKAKFYPLSFDNFFKEDEVYDLHVNNGRLLEHFHEGNMTYQTEMIKYKMPNTFVEISPELAKDRNIHEGAEVKLISTTGEAKLIVHVTDRVKGKEIYIPLNNDAMVHGDMGAINLLTNSDVDQYTDTPSYKRTSCRMEILSRRGKSPLNPTNFRVDKQRHPQYSVQVQKKWERQDYVFPGNKGDQ
>NZ_CP041727.1|WP_002460126.1|2529541_2530492_+|LytR-family-transcriptional-regulator
MRRSERKKMNLPLKIFLWMFGILVLLAIIAVIYVAAKIFITGDKIHNPLDRSHSALRSKNVNLSKGEPFTIALFGVDSDAKRKQANDGQRSDTIMILSINPSKQKTDIVSIPRDTKADIVGRGTTEKINHAYAYGGANMAVKSLEKLMNVPIDHYATIDMDGLHDMIDALGGVDVVSNDTFTINGTHFVHGEKTHLDGDKAMNFIRSRKEEGAGGDFGRQERQQIILQAMANKMVSKSSITHFNSLLSEIQKNVKTDLSLSEMNQIRSNYKGANKTVNRYQLDGQGGIQDDGLYYFIPSESSKKDSTDIINSNLGL
>NZ_CP041727.1|WP_002478794.1|2528646_2529423_+|inositol-monophosphatase-family-protein
MHKRLEEIDQLIERWIQQLDVIIPQLLAKLDTDIKQDRFDLVTNVDKALQQHFSEMLHEHLPGHQLVAEEKNNDTISAHEGHVWLLDPIDGTANLVKQQEDYCIIIGYFVNGKPKLSYIYDYVHQKLYKAIEHRGAFENNNPLPKPPILSLQDAMISFDAQYIPVDVSKALREACFANRNIGSCGLDSIKVIKGQFGAYINTNPKPWDIAAQHLFAKELGLKMTCLTRAALNIAEAGPFIISNEGCYDEIINIYQRYS
>NZ_CP041727.1|WP_002478793.1|2527566_2528256_-|HTH-domain-containing-protein
MNKAERQNQLIHVIQQNRKMTASELATALNVSKRTISRDIAELEEQGVRIFAQHGKLGGFQIQQSQSKMALSISEEQLLALFLTLNESQSYSSLPYKQEIQEIIQQCLKLPNTRVRKLLKRMDKYIKFDTIEATPLPKLFSDILIYSAERNVMSVDFVSDNKMAAQNVIFIGILCKNAEWLAIVFDIGHGCTRELPILAIHDISYSFEKTLNTHDITIDNYTQFLNPSD
>NZ_CP041727.1|WP_002460129.1|2526348_2527398_-|DUF871-family-protein
MVGFSVYLGTTLNKTYIHKMTQLGYDMIFTSLQLSKLSLRQQLAYLGELCELLRNVNMTYVIDVHPDLLNHDFFTFFNNISTGNFIIRIDNQLQISMIEELQNHGLKCCLNASTIDASILQQLPTKQPIYYCHNYYPRPDTGLSTDFVSAQNHLIRQFDSNSIIFAFIPGSEFRGPLYCGLPTIEQHRTNNPLLAATQLMNSGINNIIISDPYMTAKHAEQLIFMLRDRHFKLKVTKLEHSYQQLLLQQHTSRPDAPEHVIRSSESRSRCQQHITSQPYPFDIRSCGHVTIDNHLNGRYEGEIQIVRTPLPTHSHVNYLATIVAEDQVLLPLIQPNDTFEFIEDKGVNQ
>NZ_CP041727.1|WP_002478792.1|2525464_2526352_-|N-acetylmuramic-acid-6-phosphate-etherase
MKHLMTERRNKRTMHLDDMPILEALKTINSEDHQVAIAVQQILPELSKAIETIIHQFSKGGRLIYIGAGTSGRLGVLDAAECVPTFNTSPGEVIGLIAGGQGAMTTAIEGAEDSASLGEQDLKNINLNKQDVVVGISASGRTPYVISALTYANQLEAKTVALSCNVNSDISQLADYALEVNVGPEVLTGSTRLKAGTSQKLVLNMISTMTMIGIGKVYDNLMVDLKPTNTKLQQRSIHIIEDICSIDHETAQHLYQQANNDIKVAVVMHMCDTSRNDAQLRLTKHNGVIKKAIQS
>NZ_CP041727.1|WP_002478791.1|2524062_2525451_-|permease
MKNEQQLAEQILHAVGGIENINDILHCMTRIRLKLNNKQHVNYTELKSIKGVLGVIDDDRLQIVLGPGVVDKVTEYIEKQHKTTSSPAQPTENKQHKNSNKRWNKVLRTIADIFIPLIPAFVGAGLVGGIAAVLNIFIQAGDLTADWVKQMVVVLNVIKDGMFFYLAIFTGINAAKVFGATPGLGGVIGGTTLLTGISDKNPIVNIFTGEPLLPGQGGIIGVIIAVWLLSLIEKRLHKIVPNAIDIIITPTLTLLIIGLLTIFVIMPLAGFISSGLVIVVNWVIDIGGIFSGFIIGASFLPLVMLGLHHIFTPIHIELINQTGATNLLPIAAMAGAGQVGAALALWMRCKRNKQLANVIKGALPAGFLGIGEPLIYGVTLPLGRPFFTACLGGGIGGAVIGGIGHIGARAIGPSGLSLLPLISNHMYLGYLIGLISAYIGGFILTYFFGTTKSMRNSTQLGG
>NZ_CP041727.1|WP_002492284.1|2536149_2537103_-|2-hydroxyacid-dehydrogenase
MEKVYIAGKIPEVGLNLLKEHFEVEMYEGEGIIDKETLKRGVKDASALISILSTNVDKEVIDAANNLKIIANYGAGFNNVDVDYAREKNIDVTNTPKASTNATAELTFGLVLAVARRIVEGDKLSRTQGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAKRAKAFDMDILYTGPHQKVEKEREIGAKYVDLETLLKNSDFITINAAYSPKLHHLIDTEQFKLMKSTAYLVNAGRGPIVNEEALVQALHDKEIEGAALDVYEFEPKITEGLKSLDNVVITPHIGNATYEARDMMSKIVANDTIKKLTGETPQFIVN
>NZ_CP041727.1|WP_002478798.1|2537171_2537486_-|multidrug-efflux-SMR-transporter
MSWFYLIIAGCFEILGVVLLNQLARTSRWYYIILLALTFVLSFTTLKLAMVSIPMGTAYAIWTGIGTAGGTFIGMLFYQESTHPLRIGFIAVIIAAVIGLRLLG
>NZ_CP041727.1|WP_002478799.1|2537485_2537818_-|multidrug-resistance-protein-SMR
MTWLKVIMAGLLEIVWVTSLNQAHSLTSWSFTLLMIALSFYLVISATKSLAVGTVYALFVGIGAAGTVIVDMLFFHQPISILKLILILMLIIGILGLKLTTDITEHGGSN
>NZ_CP041727.1|WP_002478800.1|2538230_2538767_-|CHAP-domain-containing-protein
MKKLLTITTLTAGLGATLISTSHQADAAEFQPSHQYSYQQQNFSQQAYQYHTTETNTTSTSTSTQSISTSSGNLYTAGQCTWYVFDRVDGKIGSTWGNANNWASAAQAAGYTVDHQPEEGAILQTSEGSYGHVAYVESVNSDGSVTISEMNYSNGPFSTDTRTISASQASAYNYIHLN
>NZ_CP041727.1|WP_002478801.1|2539065_2539488_-|DUF4870-domain-containing-protein
MTQQSQGFNTPQHNDSDDVRLMAMLIYLLGFVSGFIGPLIIWLVKKDDSKLIDQSGKSYLNMFISYMIWCAVPVVIMMFSLIFYMPFDPTSGLISIFIFLLLNLVILGLLITFSVFNIIGCVKYYQGTYYQAPLSIRFFK
>NZ_CP041727.1|WP_002478802.1|2539719_2540793_+|octopine-dehydrogenase
MKIAIIGSGNGAVTAALDMVDQGHEVRLYCRNQSLEKFNTAFERGGFDFNNEGNEKFIEFTNISDDIAYVLQDAELVQVIIPSSFIEYYAKVMSYHVTNDHLIFFNIAASMGSIRFMNVLEDRNIDVHPKFAEANTLTYGTRVDFAQARVDLSLNVRRVYFSTFNREELNDSYDKVSQIYPQLVKEESLLKTNLENGNPEVHPGPTLLNVGRIDHAQKFSLYKEGITQHTVRLLHAIELERINLGRRLGFELESAKESRIQRGYLERTDEDEPLNRLFNTSPVFSQIPGPNHVENRYLTEDIAYGLVLWSSIGRVIDVPTPNIDAVIIIASTILERDFFEDGLTVEELGLEKLDLSY
>NZ_CP041727.1|WP_002478803.1|2540835_2542227_+|Na+/H+-antiporter-NhaC
MTRKPTFFEALSTIIVMVCVVTIGFIVFNIPIQVLLLISSAYAALIGIRVGLKWNDIEEGITHRLTTAMPAIFIILAVGIIVGSWMYAGTVPALIYYGLKFLNPQYFLVSAFIISAICSLATGTAWGSASTAGIALISIASQLNMNLGMAAGAIIAGAVFGDKMSPLSDTTNLAALVTKVNIFSHIRAMMWTTIPASLIGMIVWFVLGLHNDGHVNTKQIQSLLSELATLYQFNFFVWIPLIVIIICLMFKVSTVPSMLASSITAIFVGAFNHHFNLADGFKATFDGFTANMTGHSHISHNAKTLIEQGGMMSMTQIIVTIFCGYAFAGILEKSGCLNVLLETISKGVKSTGSLILITVICCLMMVFAAGVASIVIIMVGVVMKDMFEDMGLDRSNLSRTLEDASTMVLPLIPWGTSGIYYAQQLNVPVDQFFIWTVPCYLCAILAVFYGFTGIGIKKNNKVT
>NZ_CP041727.1|WP_080611380.1|2542628_2542811_+|hypothetical-protein
MSSTKTHINTPQSSERGPNKKKCNKHFHGQRKLGWGPNKKKCNKHFHGQRKVGAKHRKTG
>NZ_CP041727.1|WP_002478804.1|2542937_2543675_-|CHAP-domain-containing-protein
MKKIATATIATAGIATFALTGGHHAHAAEQTNHDGYNPNDPYSYSYSYTIDAQGNYHYTWKGNWSPNQLNQNQGYTYYNNYNSYYNYNNYNYSNTYASSNSYRTGGLGASYSTSSSNIHVTTTSAPSSHGVSISSASHSGSNLYTSGQCTYYVFDRVGGKIGSTWGNASNWANAAAAAGYTVNNRPSVGAIMQTSQGYYGHVAYVESVGSNGSVTVSEMNYGHGPGVVTTRTISASQAASYNFIH
>NZ_CP041727.1|WP_002478805.1|2544245_2546222_+|helix-turn-helix-transcriptional-regulator
MNGQFSVKLLQKLNTYGQKTVNVKLIYWVKGQGTIDINLKQYHMTEGDIVLLMLNDLYQIQSDDDAVTLVVDLSFKDYVKYASEYIDISGYKLSNIEKQQVLPILMNIIELECFNKADEQTTLKMIKHLCVELGSMSHLYRAKTQNMTVLDEVHDYLISHHTKKLKKQEIANALNMTNQELSNVIKYQTPFQSINQYVNDIRLKCALIDILKEHRTVEDIAYQHGFNHYSRFINLFKDSYGYTPKEIRKQYHSLTTSYYENIQYLPLSEQTYQSYFHKVKHYTTVSNNKDIILSSNTLPICHIEPKDLFITSQQLLYLNEHQIFYVTQHLFSKNKHVYVIIPFDLTDFSAVQRMCEYYLTKLNYLGLTPIFYFKGLDLTYLEQHGFNNVNQLFITLFYSRFVNEVDGVSIMLDSTDKQVIQKVVNEVRQFFNRCTLYLSVPHRDVRPYEFNEIDEYITSYFITFEQLTTWKKYHHKVILDTTMLNMNQNGEITQQNIINFSLMARYYLMLKGISFSLDFLLQYLFHGRNMDNNMFLAFFNMMNQLRGDIVHQDNQIILTKFKFEYQCLAFNMNISTAEQLQDLQLNFKTTQPMSHAESSLITYTKAPNLNHHQDQTKNKDNLFQPHFWKGQLSYPTIINRKYILPSMSIGHIKFSLRS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041727_10	10.1\|2499872\|27\|NZ_CP041727\|CRISPRCasFinder	2499872-2499898	27	NZ_CP041727.1	1919794-1919820	0	1.0
NZ_CP041727_4	4.1\|1643085\|31\|NZ_CP041727\|CRISPRCasFinder	1643085-1643115	31	NZ_CP041727.1	1427634-1427664	1	0.968
NZ_CP041727_9	9.1\|2447177\|17\|NZ_CP041727\|PILER-CR	2447177-2447193	17	NZ_CP041727.1	147775-147791	1	0.941
NZ_CP041727_9	9.1\|2447177\|17\|NZ_CP041727\|PILER-CR	2447177-2447193	17	NZ_CP041727.1	1371002-1371018	1	0.941
NZ_CP041727_10	10.1\|2499872\|27\|NZ_CP041727\|CRISPRCasFinder	2499872-2499898	27	NZ_CP041727.1	2542693-2542719	1	0.963
NZ_CP041727_10	10.1\|2499872\|27\|NZ_CP041727\|CRISPRCasFinder	2499872-2499898	27	NZ_CP041727.1	2542750-2542776	1	0.963
NZ_CP041727_11	11.1\|2535821\|34\|NZ_CP041727\|CRISPRCasFinder	2535821-2535854	34	NZ_CP041727.1	1317094-1317127	1	0.971
NZ_CP041727_4	4.1\|1643085\|31\|NZ_CP041727\|CRISPRCasFinder	1643085-1643115	31	NZ_CP041727.1	717660-717690	2	0.935
NZ_CP041727_4	4.1\|1643085\|31\|NZ_CP041727\|CRISPRCasFinder	1643085-1643115	31	NZ_CP041727.1	1978276-1978306	2	0.935
NZ_CP041727_4	4.1\|1643085\|31\|NZ_CP041727\|CRISPRCasFinder	1643085-1643115	31	NZ_CP041727.1	1609490-1609520	2	0.935
NZ_CP041727_4	4.1\|1643085\|31\|NZ_CP041727\|CRISPRCasFinder	1643085-1643115	31	NZ_CP041727.1	2215899-2215929	2	0.935
NZ_CP041727_6	6.1\|2144052\|32\|NZ_CP041727\|CRISPRCasFinder	2144052-2144083	32	NZ_CP041727.1	717660-717691	2	0.938
NZ_CP041727_6	6.1\|2144052\|32\|NZ_CP041727\|CRISPRCasFinder	2144052-2144083	32	NZ_CP041727.1	1609489-1609520	2	0.938
NZ_CP041727_6	6.1\|2144052\|32\|NZ_CP041727\|CRISPRCasFinder	2144052-2144083	32	NZ_CP041727.1	1994669-1994700	2	0.938
NZ_CP041727_6	6.1\|2144052\|32\|NZ_CP041727\|CRISPRCasFinder	2144052-2144083	32	NZ_CP041727.1	1994726-1994757	2	0.938
NZ_CP041727_6	6.1\|2144052\|32\|NZ_CP041727\|CRISPRCasFinder	2144052-2144083	32	NZ_CP041727.1	2215898-2215929	2	0.938
NZ_CP041727_11	11.1\|2535821\|34\|NZ_CP041727\|CRISPRCasFinder	2535821-2535854	34	NZ_CP041727.1	236214-236247	2	0.941
NZ_CP041727_11	11.1\|2535821\|34\|NZ_CP041727\|CRISPRCasFinder	2535821-2535854	34	NZ_CP041727.1	397471-397504	2	0.941
NZ_CP041727_11	11.1\|2535821\|34\|NZ_CP041727\|CRISPRCasFinder	2535821-2535854	34	NZ_CP041727.1	986495-986528	2	0.941
NZ_CP041727_11	11.1\|2535821\|34\|NZ_CP041727\|CRISPRCasFinder	2535821-2535854	34	NZ_CP041727.1	1340372-1340405	2	0.941
NZ_CP041727_11	11.1\|2535821\|34\|NZ_CP041727\|CRISPRCasFinder	2535821-2535854	34	NZ_CP041727.1	1784332-1784365	2	0.941

1. spacer 10.1|2499872|27|NZ_CP041727|CRISPRCasFinder matches to position: 1919794-1919820, mismatch: 0, identity: 1.0

aatgcaacaagcatttccacgaacaac	CRISPR spacer
aatgcaacaagcatttccacgaacaac	Protospacer
***************************

2. spacer 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder matches to position: 1427634-1427664, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctgtgttggggccc	Protospacer
****** ************************

3. spacer 9.1|2447177|17|NZ_CP041727|PILER-CR matches to position: 147775-147791, mismatch: 1, identity: 0.941

ttggtgaatttcttatc	CRISPR spacer
ttggtgaatttcttttc	Protospacer
************** **

4. spacer 9.1|2447177|17|NZ_CP041727|PILER-CR matches to position: 1371002-1371018, mismatch: 1, identity: 0.941

ttggtgaatttcttatc	CRISPR spacer
ttggtgaatttcttgtc	Protospacer
**************.**

5. spacer 10.1|2499872|27|NZ_CP041727|CRISPRCasFinder matches to position: 2542693-2542719, mismatch: 1, identity: 0.963

aatgcaacaagcatttccacgaacaac	CRISPR spacer
aatgcaacaagcatttccacggacaac	Protospacer
*********************.*****

6. spacer 10.1|2499872|27|NZ_CP041727|CRISPRCasFinder matches to position: 2542750-2542776, mismatch: 1, identity: 0.963

aatgcaacaagcatttccacgaacaac	CRISPR spacer
aatgcaacaagcatttccacggacaac	Protospacer
*********************.*****

7. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 1317094-1317127, mismatch: 1, identity: 0.971

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggccccaacagagagaaatacgaaaagtatttcg	Protospacer
***************************.******

8. spacer 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder matches to position: 717660-717690, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttctcgaaattctctctgttggggccc	Protospacer
******.************ ***********

9. spacer 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder matches to position: 1978276-1978306, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctttgttggggccc	Protospacer
********.********** ***********

10. spacer 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder matches to position: 1609490-1609520, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttctcgaaattctctctgttggggccc	Protospacer
******.************ ***********

11. spacer 4.1|1643085|31|NZ_CP041727|CRISPRCasFinder matches to position: 2215899-2215929, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctttgttggggccc	Protospacer
****** ************ ***********

12. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to position: 717660-717691, mismatch: 2, identity: 0.938

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
tttcttctcgaaattctctctgttggggcccc	Protospacer
***** *************.************

13. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to position: 1609489-1609520, mismatch: 2, identity: 0.938

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
tttcttctcgaaattctctctgttggggcccc	Protospacer
***** *************.************

14. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to position: 1994669-1994700, mismatch: 2, identity: 0.938

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
tttcttctcgaaattctctttgctggggcccc	Protospacer
***** ****************.*********

15. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to position: 1994726-1994757, mismatch: 2, identity: 0.938

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
tttcttctcgaaattctctttgctggggcccc	Protospacer
***** ****************.*********

16. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to position: 2215898-2215929, mismatch: 2, identity: 0.938

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
tttcttgtcgaaattctctttgttggggcccc	Protospacer
*****  *************************

17. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 236214-236247, mismatch: 2, identity: 0.941

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggccccaacaaagagaaattcgaaaagcatttcg	Protospacer
**********.******** **************

18. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 397471-397504, mismatch: 2, identity: 0.941

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggccccaacaaagagaaatgcgaaaagcatttcg	Protospacer
**********.********.**************

19. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 986495-986528, mismatch: 2, identity: 0.941

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggcctcaacagagagaaatacgaaaagtatttcg	Protospacer
****.**********************.******

20. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 1340372-1340405, mismatch: 2, identity: 0.941

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggccccaacaaagagaaatgcgaaaagcatttcg	Protospacer
**********.********.**************

21. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to position: 1784332-1784365, mismatch: 2, identity: 0.941

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggccccaacaaagagaaatgcgaaaagcatttcg	Protospacer
**********.********.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041727_7	7.1\|2326624\|30\|NZ_CP041727\|CRISPRCasFinder	2326624-2326653	30	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	187193-187222	8	0.733
NZ_CP041727_7	7.1\|2326624\|30\|NZ_CP041727\|CRISPRCasFinder	2326624-2326653	30	NZ_CP022118	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence	59911-59940	8	0.733
NZ_CP041727_7	7.1\|2326624\|30\|NZ_CP041727\|CRISPRCasFinder	2326624-2326653	30	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	962765-962794	8	0.733
NZ_CP041727_6	6.1\|2144052\|32\|NZ_CP041727\|CRISPRCasFinder	2144052-2144083	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	399493-399524	9	0.719
NZ_CP041727_7	7.1\|2326624\|30\|NZ_CP041727\|CRISPRCasFinder	2326624-2326653	30	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	485451-485480	9	0.7
NZ_CP041727_5	5.3\|1804926\|35\|NZ_CP041727\|PILER-CR,CRISPRCasFinder,CRT	1804926-1804960	35	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	64963-64997	10	0.714

1. spacer 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

aagaaatgcgacaagcatttccgcgaacaa	CRISPR spacer
tggaaatgcggcaagcatttctgcgacatc	Protospacer
 .********.**********.****

2. spacer 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder matches to NZ_CP022118 (Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

aagaaatgcgacaagcatttccgcgaacaa	CRISPR spacer
aaaaaaggcgacaagcatttccggactctt	Protospacer
**.*** **************** .  *

3. spacer 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 8, identity: 0.733

aagaaatgcgacaagcatttccgcgaacaa	CRISPR spacer
gaacgcggcgacgagcctttccgcgaacaa	Protospacer
.*. .  *****.*** *************

4. spacer 6.1|2144052|32|NZ_CP041727|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tttctgctcgaaattctctttgttggggcccc	CRISPR spacer
ccgctgctcgcaattctttttgttggttctgc	Protospacer
.. ******* ******.********  *. *

5. spacer 7.1|2326624|30|NZ_CP041727|CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 9, identity: 0.7

aagaaatgcgacaagcatttccgcgaacaa	CRISPR spacer
ttcggctgcgtcaagcatgtccgcgaacag	Protospacer
   .. **** ******* **********.

6. spacer 5.3|1804926|35|NZ_CP041727|PILER-CR,CRISPRCasFinder,CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 10, identity: 0.714

ttcatcatatccttttatatagtttttgttttgtt	CRISPR spacer
cattccatatttttttatatagtttttgtttgcta	Protospacer
. . .*****..*******************  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

18520 : 62033

Staphylococcus_phage(68.75%)

holin,head,terminase,tail,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002478853.1\|18520_19903_-	recombinase family protein	A0A2H4JD28	uncultured_Caudovirales_phage	6.9e-167	64.0
WP_002478854.1\|19959_20883_-	DUF5067 domain-containing protein	H9A0K2	Staphylococcus_phage	1.7e-92	76.1
WP_002478855.1\|20938_21550_-	helix-turn-helix domain-containing protein	A0A2H4JCV3	uncultured_Caudovirales_phage	1.1e-105	95.6
WP_002474229.1\|21721_21949_+	hypothetical protein	A0A1Q1PVU3	Staphylococcus_phage	8.1e-33	97.3
WP_002478856.1\|21976_22930_+	hypothetical protein	H9A0Q6	Staphylococcus_phage	2.5e-43	49.2
WP_002478857.1\|22926_23694_+	hypothetical protein	U3PJ35	Staphylococcus_phage	1.0e-95	68.8
WP_002478858.1\|23762_24074_+	hypothetical protein	A1KWZ2	Staphylococcus_virus	9.4e-40	61.1
WP_002478859.1\|24021_24405_-	hypothetical protein	A0A097PAT1	Streptococcus_pyogenes_phage	7.3e-10	30.8
WP_002478860.1\|24462_25215_+	hypothetical protein	S4SW96	Staphylococcus_phage	3.1e-137	98.4
WP_002478861.1\|25230_25374_+	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	9.6e-16	95.7
WP_150861605.1\|25383_25986_-	hypothetical protein	B7T096	Staphylococcus_virus	1.5e-97	93.4
WP_002478864.1\|26213_26393_+	hypothetical protein	NA	NA	NA	NA
WP_002478865.1\|26461_26947_+	siphovirus Gp157 family protein	H9A0R4	Staphylococcus_phage	1.8e-61	76.4
WP_002478866.1\|26947_27622_+	single-stranded DNA-binding protein	I6T7Q2	Staphylococcus_virus	7.1e-109	91.0
WP_150861606.1\|27618_28056_+	single-stranded DNA-binding protein	G4KNN8	Staphylococcus_phage	8.3e-50	70.1
WP_002478868.1\|28133_28940_+	DnaD domain protein	I6SB74	Staphylococcus_virus	1.1e-100	91.4
WP_085317574.1\|28939_29299_+	hypothetical protein	A0A141VTR9	Staphylococcus_phage	1.4e-50	82.4
WP_085317572.1\|29291_30527_+	AAA family ATPase	A0A2H4J996	uncultured_Caudovirales_phage	2.2e-201	86.9
WP_002478871.1\|30523_30751_+	hypothetical protein	H9A0Z4	Staphylococcus_phage	1.2e-07	41.5
WP_002478872.1\|30740_30980_+	DUF3269 family protein	NA	NA	NA	NA
WP_002478873.1\|30989_31397_+	RusA family crossover junction endodeoxyribonuclease	A0A0N9SH85	Staphylococcus_phage	3.9e-54	73.3
WP_014533256.1\|31393_31708_+	hypothetical protein	A0A2H4JG42	uncultured_Caudovirales_phage	4.3e-16	83.0
WP_150861607.1\|31710_31962_+	hypothetical protein	NA	NA	NA	NA
WP_150861608.1\|31968_32391_+	DUF3310 domain-containing protein	A0A2H4JE87	uncultured_Caudovirales_phage	2.3e-28	68.2
WP_150861609.1\|33113_33266_+	DUF1381 domain-containing protein	NA	NA	NA	NA
WP_070481527.1\|33565_33982_+	transcriptional regulator	A0A1W6JP87	Staphylococcus_phage	3.6e-63	81.9
WP_012990985.1\|34283_34712_+	hypothetical protein	A0A1P8BLJ8	Lactococcus_phage	8.4e-23	47.2
WP_150861654.1\|34698_35979_+\|terminase	PBSX family phage terminase large subunit	Q8SDU9	Staphylococcus_phage	1.5e-224	88.0
WP_150861610.1\|37242_37872_+	hypothetical protein	A0A2R4P8H7	Staphylococcus_phage	8.8e-37	43.6
WP_014533264.1\|38509_39460_+\|head	phage head morphogenesis protein	A0A1W6JNS6	Staphylococcus_phage	1.7e-145	79.7
WP_002478890.1\|39991_40597_+	DUF4355 domain-containing protein	A0A1W6JNT6	Staphylococcus_phage	9.2e-15	51.7
WP_002478891.1\|40614_41535_+\|capsid	phage major capsid protein	A0A1W6JNT3	Staphylococcus_phage	5.8e-154	89.5
WP_002478892.1\|41556_41826_+	hypothetical protein	A0A1W6JNX0	Staphylococcus_phage	2.3e-34	80.9
WP_002478893.1\|41827_42157_+\|head,tail	phage head-tail connector protein	A0A1W6JNR3	Staphylococcus_phage	6.6e-44	80.7
WP_150861611.1\|42153_42456_+	hypothetical protein	A0A1W6JNQ9	Staphylococcus_phage	1.4e-43	83.0
WP_002478895.1\|42457_42817_+	hypothetical protein	A0A1W6JNQ6	Staphylococcus_phage	2.6e-49	81.0
WP_002478896.1\|42816_43206_+	hypothetical protein	A0A1W6JNQ3	Staphylococcus_phage	7.1e-53	80.6
WP_002478897.1\|43253_43808_+\|tail	phage major tail protein, TP901-1 family	A0A1W6JNU0	Staphylococcus_phage	1.5e-88	94.0
WP_002478898.1\|43868_44228_+	hypothetical protein	A0A1W6JNQ1	Staphylococcus_phage	8.3e-56	91.6
WP_002478899.1\|44272_44617_+	hypothetical protein	A0A1W6JNR9	Staphylococcus_phage	3.9e-55	95.6
WP_150861612.1\|44631_48165_+\|tail	phage tail protein	A0A1W6JNU6	Staphylococcus_phage	1.4e-107	67.9
WP_002478901.1\|48176_49136_+\|tail	phage tail family protein	A0A1W6JNU3	Staphylococcus_phage	2.3e-169	90.3
WP_002478902.1\|49146_50382_+	hypothetical protein	A0A1W6JNY1	Staphylococcus_phage	2.6e-213	88.5
WP_002478903.1\|50382_52257_+	DUF2817 domain-containing protein	A0A1W6JNS8	Staphylococcus_phage	0.0e+00	89.6
WP_150861613.1\|52270_53428_+	DUF2479 domain-containing protein	A0A1W6JNR8	Staphylococcus_phage	4.4e-167	74.9
WP_002478905.1\|53443_53866_+	hypothetical protein	A0A1W6JNR2	Staphylococcus_phage	4.7e-50	66.9
WP_002478906.1\|53846_54245_+	hypothetical protein	A0A2H4JAU6	uncultured_Caudovirales_phage	6.0e-31	51.5
WP_002478908.1\|54720_56430_+	CHAP domain-containing protein	A0A1W6JNR1	Staphylococcus_phage	9.2e-262	81.9
WP_150861614.1\|56483_59255_+	DUF2479 domain-containing protein	Q4ZC48	Staphylococcus_virus	3.6e-215	52.1
WP_002478910.1\|59311_59584_+\|holin	phage holin	A0A2H4JHI3	uncultured_Caudovirales_phage	2.0e-38	85.6
WP_150861615.1\|59583_60993_+	CHAP domain-containing protein	A0A2H4J4H5	uncultured_Caudovirales_phage	1.3e-237	84.0
WP_002478912.1\|61472_62033_+	hypothetical protein	U3PBN3	Staphylococcus_phage	3.3e-91	84.9

DBSCAN-SWA_2

335689 : 365942

Staphylococcus_phage(96.15%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002458784.1\|335689_337084_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.5e-169	62.3
WP_002477998.1\|337090_338095_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.3e-95	51.7
WP_002458786.1\|338091_338349_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.2e-29	70.4
WP_002458787.1\|338415_338889_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	2.6e-49	60.6
WP_002477999.1\|338869_339643_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	6.5e-98	69.4
WP_002458789.1\|339706_341299_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	1.1e-274	86.0
WP_002458790.1\|341670_342867_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-198	87.4
WP_002458791.1\|342965_343874_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	1.3e-102	76.6
WP_002478000.1\|343988_344822_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.4e-119	73.3
WP_002478001.1\|345006_345360_-	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_002478002.1\|345356_345722_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.0e-33	62.0
WP_002478003.1\|345790_346096_-	hypothetical protein	NA	NA	NA	NA
WP_002478004.1\|346352_347066_+	transaldolase	M1PR54	Cyanophage	1.1e-19	36.3
WP_002458797.1\|347196_347649_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.6e-16	43.6
WP_002458798.1\|347629_348076_-	competence protein ComK	NA	NA	NA	NA
WP_002478005.1\|348091_348562_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	1.6e-27	45.5
WP_002458800.1\|348759_348984_+	hypothetical protein	NA	NA	NA	NA
WP_002458801.1\|349185_350040_+	autolysin	A0A1W6JNR1	Staphylococcus_phage	7.5e-39	42.1
WP_002478006.1\|350423_351923_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	9.9e-18	77.2
WP_002478007.1\|352234_353341_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.4e-124	62.9
WP_002458804.1\|353348_353981_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.3e-77	70.5
WP_002478008.1\|353993_355175_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.9e-174	75.3
WP_002458806.1\|355187_355646_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.6e-58	80.9
WP_002478009.1\|355723_356710_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.7e-133	72.6
WP_002458808.1\|356926_357760_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_002458809.1\|358252_358654_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_002458810.1\|358704_359268_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	3.5e-69	67.4
WP_002458811.1\|359264_360218_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	3.2e-70	86.1
WP_002478010.1\|360321_361497_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	1.8e-176	78.8
WP_002478011.1\|361818_364233_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	87.1
WP_002458814.1\|364251_364563_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	6.5e-33	68.0
WP_002478012.1\|364682_365942_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	3.7e-42	83.5

DBSCAN-SWA_3

482725 : 491744

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002478078.1\|482725_483730_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	3.8e-05	29.1
WP_002478079.1\|483732_484758_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002478080.1\|484776_485916_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.2e-85	45.0
WP_002458927.1\|485934_486195_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.8e-05	39.3
WP_002478081.1\|486380_488669_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.8e-32	34.4
WP_002478082.1\|488929_491206_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.7e-66	29.0
WP_002458930.1\|491225_491744_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.4e-27	45.8

DBSCAN-SWA_4

617441 : 626138

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002459061.1\|617441_618173_+	segregation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.1e-06	24.0
WP_012990840.1\|618165_618699_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.5e-10	29.1
WP_002478163.1\|618701_619439_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_002459064.1\|619588_620314_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-48	43.5
WP_002478164.1\|620297_622046_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.5e-20	31.6
WP_002478165.1\|622769_623312_+	ECF transporter S component	NA	NA	NA	NA
WP_002449743.1\|623453_623702_-	ferredoxin	A0A127AYY7	Bacillus_phage	5.8e-16	49.3
WP_002459068.1\|623812_624772_+	hypothetical protein	NA	NA	NA	NA
WP_002459069.1\|624758_626138_+	ATP-dependent DNA helicase RecQ	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	1.6e-51	33.2

DBSCAN-SWA_5

1030574 : 1039044

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002478377.1\|1030574_1031141_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.4e-27	39.2
WP_002478378.1\|1031140_1032172_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.7e-66	44.1
WP_002459448.1\|1032164_1033649_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	3.2e-45	30.8
WP_002478379.1\|1033627_1035817_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.0e-135	37.7
WP_002478380.1\|1035809_1036481_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_002459451.1\|1036482_1036743_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_002478381.1\|1036742_1037447_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	4.0e-46	42.4
WP_002478382.1\|1037447_1038575_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002478383.1\|1038561_1039044_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.8e-21	42.7

DBSCAN-SWA_6

1324496 : 1342406

uncultured_Caudovirales_phage(58.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002479351.1\|1324496_1325450_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	2.5e-06	62.5
WP_002492143.1\|1325436_1326414_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	5.8e-136	79.3
WP_002459737.1\|1326973_1328008_-	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002459738.1\|1328124_1328907_-	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.5e-14	31.2
WP_002479353.1\|1328903_1329863_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	4.1e-09	62.0
WP_002459740.1\|1329843_1330821_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.4e-144	81.4
WP_002459741.1\|1331189_1332158_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	5.7e-176	92.9
WP_002459742.1\|1332397_1334503_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_002459743.1\|1334465_1334864_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	4.3e-53	76.5
WP_014533353.1\|1335737_1336607_+	DMT family transporter	NA	NA	NA	NA
WP_002479355.1\|1336619_1337120_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.0e-51	70.8
WP_037553882.1\|1337404_1338910_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.2e-60	32.9
WP_002479357.1\|1339237_1340152_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA
WP_002479359.1\|1340582_1341113_-	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	1.3e-28	37.8
WP_002459751.1\|1341350_1342406_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	3.0e-21	27.7

DBSCAN-SWA_7

1356928 : 1363549

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002459762.1\|1356928_1358080_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	6.0e-23	35.1
WP_002479366.1\|1358063_1358660_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.4e-39	44.5
WP_002459764.1\|1358995_1359667_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	7.9e-68	57.5
WP_002459765.1\|1359668_1360088_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_002459766.1\|1360087_1360804_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	1.8e-49	40.7
WP_002459767.1\|1360902_1361493_+	hypothetical protein	NA	NA	NA	NA
WP_002479367.1\|1361533_1362556_-	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	4.2e-60	41.9
WP_002479368.1\|1362712_1363549_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	9.6e-63	44.4

DBSCAN-SWA_8

2636638 : 2645064

Staphylococcus_phage(58.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002478853.1\|2636638_2638021_-	recombinase family protein	A0A2H4JD28	uncultured_Caudovirales_phage	6.9e-167	64.0
WP_002478854.1\|2638077_2639001_-	DUF5067 domain-containing protein	H9A0K2	Staphylococcus_phage	1.7e-92	76.1
WP_002478855.1\|2639056_2639668_-	helix-turn-helix domain-containing protein	A0A2H4JCV3	uncultured_Caudovirales_phage	1.1e-105	95.6
WP_002474229.1\|2639839_2640067_+	hypothetical protein	A0A1Q1PVU3	Staphylococcus_phage	8.1e-33	97.3
WP_002478856.1\|2640094_2641048_+	hypothetical protein	H9A0Q6	Staphylococcus_phage	2.5e-43	49.2
WP_002478857.1\|2641044_2641812_+	hypothetical protein	U3PJ35	Staphylococcus_phage	1.0e-95	68.8
WP_002478858.1\|2641880_2642192_+	hypothetical protein	A1KWZ2	Staphylococcus_virus	9.4e-40	61.1
WP_002478859.1\|2642139_2642523_-	hypothetical protein	A0A097PAT1	Streptococcus_pyogenes_phage	7.3e-10	30.8
WP_002478860.1\|2642580_2643333_+	hypothetical protein	S4SW96	Staphylococcus_phage	3.1e-137	98.4
WP_002478861.1\|2643348_2643492_+	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	9.6e-16	95.7
WP_150861605.1\|2643501_2644104_-	hypothetical protein	B7T096	Staphylococcus_virus	1.5e-97	93.4
WP_002478864.1\|2644330_2644510_+	hypothetical protein	NA	NA	NA	NA
WP_002478865.1\|2644578_2645064_+	siphovirus Gp157 family protein	H9A0R4	Staphylococcus_phage	1.8e-61	76.4

Anti-CRISPR protein detection

Acr_ID: NZ_CP041727.1|WP_002459743.1|1334465_1334864_-|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP041727.1|WP_002459743.1|1334465_1334864_-|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI

1334465_1334864_-

132 aa aa

1324496-1342406

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP041727_11	Orphan	11.1\|2535821\|34\|NZ_CP041727\|CRISPRCasFinder	2535821-2535854	34	1340372-1340405	2

1. spacer 11.1|2535821|34|NZ_CP041727|CRISPRCasFinder matches to NZ_CP041727 position: 1340372-1340405, mismatch: 2

ggccccaacagagagaaatacgaaaagcatttcg	CRISPR spacer
ggccccaacaaagagaaatgcgaaaagcatttcg	Protospacer
**********.********.**************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041727

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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