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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP043527 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_03, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP043523 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 chromosome, complete genome 2 crisprs cas3,csa3,DinG,WYL,DEDDh 0 0 149 0
NZ_CP043524 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_05, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP043528 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_04, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP043521 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_09, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP043526 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_02, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP043525 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_01, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP043520 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_08, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP043522 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_10, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP043518 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_06, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP043519 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_07, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP043523
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043523_1 958309-958487 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043523_2 1381688-1381782 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 6941 4 Orpheovirus(50.0%) protease,tRNA NA
DBSCAN-SWA_2 23236 : 25177 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_3 33423 : 36404 2 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_4 41121 : 42321 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_5 50305 : 128670 107 Lactococcus_phage(88.75%) head,protease,integrase,capsid,holin,tail,terminase,portal,tRNA attL 110780:110808|attR 125930:125958
DBSCAN-SWA_6 134447 : 137354 3 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_7 152194 : 155528 2 Helicobacter_phage(50.0%) NA NA
DBSCAN-SWA_8 158589 : 163692 4 Cronobacter_phage(50.0%) protease NA
DBSCAN-SWA_9 173619 : 179160 6 Moumouvirus(25.0%) NA NA
DBSCAN-SWA_10 187930 : 189737 2 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_11 193060 : 193630 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_12 197977 : 206310 9 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_13 216096 : 281158 52 Bacillus_phage(20.0%) protease,tRNA,transposase,integrase attL 242506:242565|attR 259974:260085
DBSCAN-SWA_14 284291 : 290667 3 Paramecium_bursaria_Chlorella_virus(50.0%) transposase NA
DBSCAN-SWA_15 308045 : 333502 19 Bacillus_phage(37.5%) transposase NA
DBSCAN-SWA_16 341026 : 342382 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_17 352006 : 353395 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_18 358478 : 363027 4 Acanthocystis_turfacea_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_19 367222 : 368104 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_20 383924 : 386759 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_21 392029 : 392761 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_22 398694 : 400972 2 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_23 404189 : 411323 8 Streptococcus_phage(40.0%) tRNA NA
DBSCAN-SWA_24 414434 : 418313 4 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_25 422068 : 424237 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_26 433812 : 438091 3 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_27 444049 : 447864 3 Shigella_phage(66.67%) transposase NA
DBSCAN-SWA_28 454119 : 456282 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_29 463815 : 464529 1 Serratia_phage(100.0%) NA NA
DBSCAN-SWA_30 469947 : 474128 4 Yellowstone_lake_mimivirus(50.0%) NA NA
DBSCAN-SWA_31 479422 : 481510 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_32 484917 : 488767 4 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_33 509189 : 509921 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_34 522205 : 529438 7 Bodo_saltans_virus(25.0%) NA NA
DBSCAN-SWA_35 536023 : 539223 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_36 543633 : 547178 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_37 558938 : 559379 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_38 565729 : 577560 12 unidentified_phage(20.0%) transposase NA
DBSCAN-SWA_39 586550 : 588374 1 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_40 597778 : 601418 4 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_41 607673 : 621457 11 Enterococcus_phage(25.0%) NA NA
DBSCAN-SWA_42 630115 : 647971 18 Staphylococcus_phage(30.0%) NA NA
DBSCAN-SWA_43 653259 : 656390 3 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_44 659910 : 661272 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_45 665689 : 673253 10 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_46 677937 : 683970 7 Bacillus_virus(60.0%) NA NA
DBSCAN-SWA_47 689927 : 696828 4 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_48 706352 : 711943 5 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_49 723817 : 739797 19 Streptococcus_phage(25.0%) protease,tRNA NA
DBSCAN-SWA_50 742798 : 743437 1 Lactobacillus_virus(100.0%) NA NA
DBSCAN-SWA_51 748241 : 749528 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_52 752604 : 753465 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_53 766685 : 768068 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_54 788768 : 789880 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_55 797395 : 800761 2 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_56 806620 : 807409 1 Autographa_californica_nuclear_polyhedrosis_virus(100.0%) NA NA
DBSCAN-SWA_57 817430 : 818210 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_58 827125 : 829258 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_59 840552 : 842605 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_60 852930 : 853953 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_61 858329 : 865825 5 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_62 871125 : 872214 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_63 875795 : 884906 10 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_64 900855 : 901632 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_65 910549 : 911497 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_66 921025 : 924275 4 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_67 935455 : 939632 2 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_68 947206 : 952661 5 Lactobacillus_phage(33.33%) transposase NA
DBSCAN-SWA_69 969406 : 970354 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_70 976159 : 979467 2 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_71 985453 : 1003212 20 Streptococcus_phage(22.22%) transposase NA
DBSCAN-SWA_72 1007481 : 1008708 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_73 1030588 : 1033023 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_74 1041360 : 1042092 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_75 1049254 : 1050796 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_76 1085772 : 1111346 22 Synechococcus_phage(27.27%) transposase NA
DBSCAN-SWA_77 1115844 : 1119995 6 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_78 1125873 : 1130571 5 Hokovirus(50.0%) NA NA
DBSCAN-SWA_79 1135148 : 1138878 4 unidentified_phage(50.0%) tRNA NA
DBSCAN-SWA_80 1150925 : 1151237 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_81 1170319 : 1174144 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_82 1177151 : 1185724 9 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_83 1190142 : 1191090 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_84 1198154 : 1200555 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_85 1218607 : 1229908 11 Staphylococcus_phage(16.67%) NA NA
DBSCAN-SWA_86 1238353 : 1246125 7 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_87 1259622 : 1261763 2 Ectocarpus_siliculosus_virus(50.0%) NA NA
DBSCAN-SWA_88 1281266 : 1282378 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_89 1287096 : 1291687 4 Acanthocystis_turfacea_Chlorella_virus(33.33%) transposase NA
DBSCAN-SWA_90 1299709 : 1315105 15 Planktothrix_phage(25.0%) tRNA NA
DBSCAN-SWA_91 1322354 : 1323776 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_92 1331181 : 1333686 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_93 1342888 : 1345501 3 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_94 1353169 : 1353913 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_95 1364713 : 1369902 4 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_96 1381900 : 1402400 15 uncultured_virus(12.5%) NA NA
DBSCAN-SWA_97 1406521 : 1409518 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_98 1414574 : 1415369 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_99 1419741 : 1422564 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_100 1427611 : 1438189 11 Mycobacterium_phage(25.0%) tRNA NA
DBSCAN-SWA_101 1442950 : 1446538 5 Planktothrix_phage(66.67%) NA NA
DBSCAN-SWA_102 1452371 : 1530792 98 Lactococcus_phage(81.16%) head,protease,integrase,transposase,holin,terminase,portal,tRNA attL 1468218:1468240|attR 1533616:1533638
DBSCAN-SWA_103 1535314 : 1535980 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_104 1549009 : 1555873 5 Planktothrix_phage(25.0%) NA NA
DBSCAN-SWA_105 1560884 : 1565750 3 Chrysochromulina_ericina_virus(50.0%) NA NA
DBSCAN-SWA_106 1570504 : 1582635 14 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_107 1586738 : 1587998 1 Serratia_phage(100.0%) tRNA NA
DBSCAN-SWA_108 1592057 : 1593461 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_109 1600789 : 1606865 5 Tupanvirus(25.0%) tRNA,transposase NA
DBSCAN-SWA_110 1618051 : 1629049 8 Planktothrix_phage(28.57%) NA NA
DBSCAN-SWA_111 1640484 : 1645421 6 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_112 1650548 : 1656725 7 Planktothrix_phage(66.67%) NA NA
DBSCAN-SWA_113 1665137 : 1668857 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_114 1671872 : 1675645 2 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_115 1679828 : 1680569 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_116 1686934 : 1688617 1 Brochothrix_phage(100.0%) NA NA
DBSCAN-SWA_117 1700397 : 1711786 11 Enterococcus_phage(28.57%) NA NA
DBSCAN-SWA_118 1717018 : 1730370 11 Staphylococcus_phage(40.0%) NA NA
DBSCAN-SWA_119 1744647 : 1745307 1 Tokyovirus(100.0%) NA NA
DBSCAN-SWA_120 1755259 : 1765643 10 Klosneuvirus(33.33%) holin NA
DBSCAN-SWA_121 1770334 : 1774749 5 unidentified_phage(33.33%) transposase NA
DBSCAN-SWA_122 1777829 : 1782032 6 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_123 1797484 : 1799437 2 Clostridium_botulinum_C_phage(50.0%) NA NA
DBSCAN-SWA_124 1806406 : 1806604 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_125 1822581 : 1826054 3 uncultured_Mediterranean_phage(50.0%) tRNA,integrase attL 1818522:1818536|attR 1833358:1833372
DBSCAN-SWA_126 1838299 : 1842904 4 Clostridioides_phage(33.33%) NA NA
DBSCAN-SWA_127 1846022 : 1968588 117 Lactococcus_phage(17.86%) protease,integrase,bacteriocin,transposase,tRNA attL 1848721:1848760|attR 1890321:1890360
DBSCAN-SWA_128 1973911 : 1977957 2 Orpheovirus(50.0%) NA NA
DBSCAN-SWA_129 1982874 : 2027285 46 Lactococcus_phage(78.79%) protease,integrase,bacteriocin,transposase,terminase,tRNA attL 2001301:2001328|attR 2016230:2016257
DBSCAN-SWA_130 2034581 : 2044740 9 Leuconostoc_phage(25.0%) bacteriocin NA
DBSCAN-SWA_131 2048137 : 2049280 1 Aurantimonas_phage(100.0%) NA NA
DBSCAN-SWA_132 2056903 : 2058566 2 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_133 2062451 : 2071548 9 Tupanvirus(33.33%) integrase attL 2051445:2051504|attR 2082457:2087630
DBSCAN-SWA_134 2077369 : 2079346 1 Campylobacter_phage(100.0%) NA NA
DBSCAN-SWA_135 2091485 : 2101682 8 Paramecium_bursaria_Chlorella_virus(33.33%) tRNA NA
DBSCAN-SWA_136 2115497 : 2121353 5 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_137 2125914 : 2127426 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_138 2131840 : 2151753 21 Lactobacillus_phage(12.5%) transposase NA
DBSCAN-SWA_139 2155144 : 2155645 1 Streptococcus_virus(100.0%) NA NA
DBSCAN-SWA_140 2158665 : 2231781 52 unidentified_phage(16.67%) protease,tRNA,transposase NA
DBSCAN-SWA_141 2235702 : 2240679 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_142 2246025 : 2246763 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_143 2252890 : 2254708 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_144 2344595 : 2353913 10 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_145 2358537 : 2362131 3 Phage_TP(33.33%) NA NA
DBSCAN-SWA_146 2370431 : 2374460 2 Herpes_simplex_virus(50.0%) NA NA
DBSCAN-SWA_147 2378115 : 2379372 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_148 2386664 : 2391356 4 Streptococcus_phage(66.67%) tRNA NA
DBSCAN-SWA_149 2398568 : 2414894 24 Lactococcus_phage(85.71%) integrase,transposase attL 2394997:2395013|attR 2411760:2411776
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage