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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP051655 Escherichia coli strain RM13745 plasmid pRM13745-2 0 crisprs NA 0 0 0 0
NZ_CP051654 Escherichia coli strain RM13745 plasmid pRM13745-1 0 crisprs RT 0 0 0 0
NZ_CP044312 Escherichia coli strain RM13745 chromosome, complete genome 8 crisprs c2c9_V-U4,DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e 0 11 16 0

Results visualization

1. NZ_CP044312
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044312_1 50064-50141 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044312_2 595122-595237 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044312_3 808382-808535 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044312_4 1369971-1370112 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044312_5 1491044-1491192 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044312_6 3713001-3713578 TypeI-E I-E
9 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044312_7 3739277-3739610 Unclear I-E
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044312_8 4328808-4328947 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP044312_3 3.1|808435|48|NZ_CP044312|CRISPRCasFinder 808435-808482 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4089-4136 3 0.938
NZ_CP044312_3 3.1|808435|48|NZ_CP044312|CRISPRCasFinder 808435-808482 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4088-4135 3 0.938
NZ_CP044312_3 3.1|808435|48|NZ_CP044312|CRISPRCasFinder 808435-808482 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4088-4135 3 0.938
NZ_CP044312_3 3.1|808435|48|NZ_CP044312|CRISPRCasFinder 808435-808482 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4088-4135 3 0.938
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_MG299151 Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence 51276-51307 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_KY471628 Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence 45716-45747 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_MG299131 Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence 51276-51307 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_KY471629 Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence 45716-45747 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_MG299133 Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence 51276-51307 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_MG299128 Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence 51276-51307 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_MG299147 Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence 51276-51307 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NC_018995 Escherichia coli plasmid pHUSEC41-1, complete sequence 29015-29046 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_CP053235 Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence 78292-78323 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_CP005999 Escherichia coli B7A plasmid pEB1, complete sequence 39563-39594 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 KU932021 Escherichia coli plasmid pEC3I, complete sequence 51902-51933 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_CP024154 Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence 18560-18591 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NC_011754 Escherichia coli ED1a plasmid pECOED, complete sequence 49240-49271 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_CP015141 Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence 81434-81465 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_LR213460 Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3 28916-28947 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_MH287044 Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence 36182-36213 7 0.781
NZ_CP044312_7 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT 3739367-3739398 32 NZ_MH618673 Escherichia coli strain 838B plasmid p838B-R, complete sequence 32230-32261 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_MG299151 Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence 51276-51307 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_KY471628 Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence 45716-45747 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_MG299131 Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence 51276-51307 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_KY471629 Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence 45716-45747 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_MG299133 Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence 51276-51307 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_MG299128 Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence 51276-51307 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_MG299147 Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence 51276-51307 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NC_018995 Escherichia coli plasmid pHUSEC41-1, complete sequence 29015-29046 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_CP053235 Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence 78292-78323 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_CP005999 Escherichia coli B7A plasmid pEB1, complete sequence 39563-39594 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 KU932021 Escherichia coli plasmid pEC3I, complete sequence 51902-51933 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_CP024154 Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence 18560-18591 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NC_011754 Escherichia coli ED1a plasmid pECOED, complete sequence 49240-49271 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_CP015141 Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence 81434-81465 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_LR213460 Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3 28916-28947 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_MH287044 Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence 36182-36213 7 0.781
NZ_CP044312_7 7.7|3739368|32|NZ_CP044312|PILER-CR 3739368-3739399 32 NZ_MH618673 Escherichia coli strain 838B plasmid p838B-R, complete sequence 32230-32261 7 0.781
NZ_CP044312_8 8.1|4328857|42|NZ_CP044312|CRISPRCasFinder 4328857-4328898 42 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 30214-30255 7 0.833
NZ_CP044312_6 6.2|3713091|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713091-3713122 32 NZ_CP006991 Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence 532343-532374 8 0.75
NZ_CP044312_6 6.7|3713396|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713396-3713427 32 NZ_CP034185 Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence 17977-18008 8 0.75
NZ_CP044312_6 6.7|3713396|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713396-3713427 32 NZ_CP017753 Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence 97497-97528 8 0.75
NZ_CP044312_7 7.3|3739428|32|NZ_CP044312|CRISPRCasFinder,CRT 3739428-3739459 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1417960-1417991 8 0.75
NZ_CP044312_7 7.8|3739429|32|NZ_CP044312|PILER-CR 3739429-3739460 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1417960-1417991 8 0.75
NZ_CP044312_8 8.1|4328857|42|NZ_CP044312|CRISPRCasFinder 4328857-4328898 42 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 24899-24940 8 0.81
NZ_CP044312_6 6.2|3713091|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713091-3713122 32 NZ_CP040723 Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence 35740-35771 9 0.719
NZ_CP044312_6 6.7|3713396|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713396-3713427 32 NZ_CP017750 Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence 405875-405906 9 0.719
NZ_CP044312_8 8.1|4328857|42|NZ_CP044312|CRISPRCasFinder 4328857-4328898 42 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 24786-24827 9 0.786
NZ_CP044312_6 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713152-3713183 32 NC_007766 Rhizobium etli CFN 42 plasmid p42f, complete sequence 190028-190059 10 0.688
NZ_CP044312_6 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713152-3713183 32 NZ_CP006990 Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence 191384-191415 10 0.688
NZ_CP044312_6 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713152-3713183 32 NZ_CP020911 Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence 329763-329794 10 0.688
NZ_CP044312_6 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713152-3713183 32 NC_021911 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence 796218-796249 10 0.688
NZ_CP044312_6 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713152-3713183 32 NZ_CP021127 Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence 177984-178015 10 0.688
NZ_CP044312_6 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713152-3713183 32 CP007644 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence 190516-190547 10 0.688
NZ_CP044312_6 6.6|3713335|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713335-3713366 32 NZ_CP025810 Sulfitobacter sp. SK025 plasmid unnamed2, complete sequence 89235-89266 10 0.688
NZ_CP044312_6 6.7|3713396|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713396-3713427 32 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 2248362-2248393 10 0.688
NZ_CP044312_6 6.9|3713518|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713518-3713549 32 CP011075 Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence 244686-244717 10 0.688
NZ_CP044312_6 6.9|3713518|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713518-3713549 32 GU075905 Prochlorococcus phage P-HM2, complete genome 78536-78567 10 0.688
NZ_CP044312_6 6.6|3713335|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT 3713335-3713366 32 NC_019364 Sulfitobacter guttiformis plasmid pSD118, complete sequence 38310-38341 11 0.656

1. spacer 3.1|808435|48|NZ_CP044312|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

2. spacer 3.1|808435|48|NZ_CP044312|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

3. spacer 3.1|808435|48|NZ_CP044312|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

4. spacer 3.1|808435|48|NZ_CP044312|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

5. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

6. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

7. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

8. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

9. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

10. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

11. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

12. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

13. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

14. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

15. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

16. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

17. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

18. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

19. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

20. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

21. spacer 7.2|3739367|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

22. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

23. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

24. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

25. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

26. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

27. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

28. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

29. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

30. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

31. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

32. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

33. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

34. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

35. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

36. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

37. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

38. spacer 7.7|3739368|32|NZ_CP044312|PILER-CR matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ . 

39. spacer 8.1|4328857|42|NZ_CP044312|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.833

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
gcgtaggccagataaggcgtttacgccgcatccggcatttgt	Protospacer
.******.*********.****************.*  .***

40. spacer 6.2|3713091|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

ggatctgccagcgcctctgcggggcggtaaac	CRISPR spacer
ggatcggccagcgcatctgcgggaggatgatg	Protospacer
***** ******** ********. *.*.*  

41. spacer 6.7|3713396|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
agttggtagcggccctgcgcgtcggtgacgct	Protospacer
   .******* * ****************  

42. spacer 6.7|3713396|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
ttgaagaagcgcgactgcgcgtcggtgacgtc	Protospacer
*.. .* ***** *****************  

43. spacer 7.3|3739428|32|NZ_CP044312|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tggttcactcacgcaacgtctgagcgcgttga	CRISPR spacer
cggggtaatcacgcaacgtccgaccgcgttgt	Protospacer
.**  .* ************.** ******* 

44. spacer 7.8|3739429|32|NZ_CP044312|PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tggttcactcacgcaacgtctgagcgcgttga	CRISPR spacer
cggggtaatcacgcaacgtccgaccgcgttgt	Protospacer
.**  .* ************.** ******* 

45. spacer 8.1|4328857|42|NZ_CP044312|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.81

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaat	Protospacer
 .*******.*******.******************  * .*

46. spacer 6.2|3713091|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ggatctgccagcgcctctgcggggcggtaaac	CRISPR spacer
gtcgctgccagcgcctcggcgaggcggtctcg	Protospacer
*   ************* ***.******    

47. spacer 6.7|3713396|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
ttgaagaagcgcgactgcgcgtcagtgacgtc	Protospacer
*.. .* ***** **********.******  

48. spacer 8.1|4328857|42|NZ_CP044312|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.786

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaac	Protospacer
 .*******.*******.******************  * ..

49. spacer 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gcgatcgccaaacgcggcgtgataaacgtgct	Protospacer
*. ******** ******* ******.. .. 

50. spacer 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gcgatcgccaaacgcggcgtgataaacgtgct	Protospacer
*. ******** ******* ******.. .. 

51. spacer 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gcgatcgccaaacgcggcgtgataaacgtgct	Protospacer
*. ******** ******* ******.. .. 

52. spacer 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gggatcgccaaacgcggcgtgataaacgtgct	Protospacer
*  ******** ******* ******.. .. 

53. spacer 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gcgatcgccaaacgcggcgtgataaacgtgct	Protospacer
*. ******** ******* ******.. .. 

54. spacer 6.3|3713152|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gcgatcgccaaacgcggcgtgataaacgtgct	Protospacer
*. ******** ******* ******.. .. 

55. spacer 6.6|3713335|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025810 (Sulfitobacter sp. SK025 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

gtcatctgacgcaaaatctggtgccgccaaat	CRISPR spacer
tcgatctgacgcaaaaactgctgccgctgctc	Protospacer
 . ************* *** ******..  .

56. spacer 6.7|3713396|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
gggacgtcgcgccactgggcgtcggtgatgtc	Protospacer
  .  ** ********* **********.*  

57. spacer 6.9|3713518|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ataattcgcaaatcaatatatattttgtccgt	CRISPR spacer
tattttcggaaatcaatctatattttgcctca	Protospacer
    **** ******** *********.*.  

58. spacer 6.9|3713518|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.688

ataattcgcaaatcaatatatattttgtccgt	CRISPR spacer
ccagaagtaaaatcaatatataatttttccgt	Protospacer
 .*.     ************* *** *****

59. spacer 6.6|3713335|32|NZ_CP044312|PILER-CR,CRISPRCasFinder,CRT matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 11, identity: 0.656

gtcatctgacgcaaaatctggtgccgccaaat	CRISPR spacer
tcgatctgacgcaaaaactgttgccgatgctg	Protospacer
 . ************* *** ***** ..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 352046 : 363891 15 Enterobacteria_phage(90.0%) integrase attL 346685:346699|attR 379879:379893
DBSCAN-SWA_2 456022 : 527917 82 Escherichia_phage(32.76%) terminase,transposase,head,tail,holin,protease,portal,capsid,tRNA,integrase attL 450659:450673|attR 485210:485224
DBSCAN-SWA_3 725290 : 788155 51 Escherichia_phage(20.0%) tRNA,plate,protease,transposase NA
DBSCAN-SWA_4 822841 : 837111 14 Enterobacteria_phage(87.5%) integrase attL 820972:820985|attR 833570:833583
DBSCAN-SWA_5 1085645 : 1155035 72 Enterobacteria_phage(42.86%) terminase,transposase,head,tail,protease,lysis,tRNA,portal,capsid,integrase attL 1095807:1095853|attR 1146509:1146555
DBSCAN-SWA_6 1582647 : 1697987 136 Enterobacteria_phage(41.67%) terminase,transposase,head,tail,protease,holin,portal,capsid,integrase attL 1597729:1597788|attR 1693250:1693314
DBSCAN-SWA_7 2058250 : 2110099 61 Escherichia_phage(80.7%) terminase,plate,tail,holin,tRNA NA
DBSCAN-SWA_8 2300783 : 2355906 65 Enterobacteria_phage(39.58%) terminase,transposase,head,tail,holin,portal,capsid,lysis,integrase attL 2304583:2304599|attR 2356245:2356261
DBSCAN-SWA_9 2595365 : 2686179 109 Escherichia_phage(43.84%) terminase,transposase,head,tail,protease,holin,capsid,tRNA,portal,lysis,integrase attL 2667205:2667221|attR 2690606:2690622
DBSCAN-SWA_10 2694027 : 2760649 80 Enterobacteria_phage(74.0%) terminase,plate,head,tail,holin,capsid,tRNA,portal,integrase attL 2724937:2724996|attR 2761592:2761715
DBSCAN-SWA_11 2991663 : 2999972 9 Enterobacteria_phage(83.33%) NA NA
DBSCAN-SWA_12 3232336 : 3318352 49 Enterobacteria_phage(16.67%) integrase,transposase attL 3246237:3246296|attR 3317244:3319198
DBSCAN-SWA_13 3600872 : 3612321 13 Enterobacteria_phage(72.73%) integrase attL 3596629:3596642|attR 3603977:3603990
DBSCAN-SWA_14 3692392 : 3705575 12 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_15 4033869 : 4138786 102 Vibrio_phage(39.22%) transposase,plate,head,tail,protease,integrase attL 4033642:4033658|attR 4086984:4087000
DBSCAN-SWA_16 5092959 : 5194954 104 Escherichia_phage(39.13%) terminase,transposase,plate,head,tail,holin,protease,portal,tRNA,capsid,lysis,integrase attL 5122110:5122169|attR 5193865:5195149
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage