CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044313	Escherichia coli strain RM11911 chromosome, complete genome	8 crisprs	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	0	12	18	0
NZ_CP051656	Escherichia coli strain RM11911 plasmid pRM11911	0 crisprs	RT	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044313_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044313_1

2129326-2129964

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP044313_1

>merge|NZ_CP044313|1|2129326-2129964|CRT,PILER-CR,CRISPRCasFinder
GGGTGTTCTACCGCAGGGGCGGGGAATTCTAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGGCGCGGGGAACACTGTACGCGGCGAGTTTTAGCGACAGGTCATCCCGGTTTATCCCCGCTGGCGCGGGGAACACGGATCTGCCAGCGCCTCTGCGGGGCGGTAAACCGGTTTATCCCCGCTGGCGCGGGGAACACGTTATCGCCAATCGCGGCGAGATAAATAGATGCGGTTTATCCCCGCTGGCGCGGGGAACACAAAGCACGGAATTTTTACAGCGCGTTAGATCCCGGTTTATCCCCGCTGGCGCGGGGAACACAGTGCGGGCGGTTCAGAGGAATTGTTCGTAGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTCATCTGACGCAAAATCTGGTGCCGCCAAATCGGTTTATCCCCGCTGGCGCGGGGAACACTCACGGTAGCGCCACTGCGCGTCGGTGACGGGCGGTTTATCCCCGCTGGCGCGGGGAACACAACGAACAGGGATTTGTCGGCAGTTTCTTTACCGGTTTATCCCCGCTGGCGCGGGGAACACATAATTCGCAAATCAATATATATTTTGTCCGTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044313|1|1|2129326-2129964|CRT
GGGTGTTCTACCGCAGGGGCGGGGAATTC	TAAGTGATATCCATCATCGCATCCAGTGCGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACGCGGCGAGTTTTAGCGACAGGTCATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTATCGCCAATCGCGGCGAGATAAATAGATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAGCACGGAATTTTTACAGCGCGTTAGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGCGGGCGGTTCAGAGGAATTGTTCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCATCTGACGCAAAATCTGGTGCCGCCAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGGTAGCGCCACTGCGCGTCGGTGACGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACGAACAGGGATTTGTCGGCAGTTTCTTTAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAATTCGCAAATCAATATATATTTTGTCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044313|1|1|2129387-2129964|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACGCGGCGAGTTTTAGCGACAGGTCATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTATCGCCAATCGCGGCGAGATAAATAGATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAGCACGGAATTTTTACAGCGCGTTAGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGCGGGCGGTTCAGAGGAATTGTTCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCATCTGACGCAAAATCTGGTGCCGCCAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGGTAGCGCCACTGCGCGTCGGTGACGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACGAACAGGGATTTGTCGGCAGTTTCTTTAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAATTCGCAAATCAATATATATTTTGTCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044313|1|1|2129387-2129964|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACGCGGCGAGTTTTAGCGACAGGTCATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTATCGCCAATCGCGGCGAGATAAATAGATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAGCACGGAATTTTTACAGCGCGTTAGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGCGGGCGGTTCAGAGGAATTGTTCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCATCTGACGCAAAATCTGGTGCCGCCAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGGTAGCGCCACTGCGCGTCGGTGACGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACGAACAGGGATTTGTCGGCAGTTTCTTTAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAATTCGCAAATCAATATATATTTTGTCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044313.1\|WP_000517476.1\|2124195_2124507_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP044313.1\|WP_000085051.1\|2131902_2132649_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP044313.1\|WP_050938975.1\|2128267_2129305_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP044313.1\|WP_000372108.1\|2127107_2128016_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP044313.1\|WP_001090386.1\|2125678_2127106_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP044313.1\|WP_000246138.1\|2123466_2124177_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP044313.1\|WP_000956460.1\|2138812_2138965_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP044313.1\|WP_001295182.1\|2121199_2121961_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP044313.1\|WP_000029329.1\|2133726_2134263_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP044313.1\|WP_001246104.1\|2124700_2125024_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP044313.1\|WP_000144861.1\|2130350_2131274_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP044313.1\|WP_000063176.1\|2130060_2130354_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP044313.1\|WP_050938972.1\|2135919_2138619_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP044313.1\|WP_050938973.1\|2132659_2133715_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP044313.1\|WP_000281446.1\|2131270_2131921_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP044313.1\|WP_001084084.1\|2134259_2135822_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP044313.1\|WP_000039843.1\|2139229_2139964_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP044313.1\|WP_000568943.1\|2121941_2122991_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP044313.1\|WP_001219242.1\|2122987_2123467_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP044313.1\|WP_001173673.1\|2125073_2125679_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
NZ_CP044313.1\|WP_000517476.1\|2124195_2124507_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP044313.1\|WP_000085051.1\|2131902_2132649_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.83917e-49
NZ_CP044313.1\|WP_050938975.1\|2128267_2129305_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP044313.1\|WP_000372108.1\|2127107_2128016_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP044313.1\|WP_001090386.1\|2125678_2127106_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP044313.1\|WP_000246138.1\|2123466_2124177_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP044313.1\|WP_000956460.1\|2138812_2138965_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	4.96653e-13
NZ_CP044313.1\|WP_001295182.1\|2121199_2121961_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP044313.1\|WP_000029329.1\|2133726_2134263_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
NZ_CP044313.1\|WP_001246104.1\|2124700_2125024_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP044313.1\|WP_000144861.1\|2130350_2131274_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.67486e-158
NZ_CP044313.1\|WP_000063176.1\|2130060_2130354_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP044313.1\|WP_050938972.1\|2135919_2138619_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.06035e-178
NZ_CP044313.1\|WP_050938973.1\|2132659_2133715_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.1039e-153
NZ_CP044313.1\|WP_000281446.1\|2131270_2131921_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.0289e-91
NZ_CP044313.1\|WP_001084084.1\|2134259_2135822_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP044313.1\|WP_000039843.1\|2139229_2139964_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NZ_CP044313.1\|WP_000568943.1\|2121941_2122991_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP044313.1\|WP_001219242.1\|2122987_2123467_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP044313.1\|WP_001173673.1\|2125073_2125679_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148

>NZ_CP044313.1|WP_050938975.1|2128267_2129305_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRAQAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP044313.1|WP_000372108.1|2127107_2128016_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP044313.1|WP_001090386.1|2125678_2127106_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEKTFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP044313.1|WP_001173673.1|2125073_2125679_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP044313.1|WP_001246104.1|2124700_2125024_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP044313.1|WP_000517476.1|2124195_2124507_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP044313.1|WP_000246138.1|2123466_2124177_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP044313.1|WP_001219242.1|2122987_2123467_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP044313.1|WP_000568943.1|2121941_2122991_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP044313.1|WP_001295182.1|2121199_2121961_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP044313.1|WP_000063176.1|2130060_2130354_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP044313.1|WP_000144861.1|2130350_2131274_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP044313.1|WP_000281446.1|2131270_2131921_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELRTGQQLCFNLRANPTICKSGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP044313.1|WP_000085051.1|2131902_2132649_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP044313.1|WP_050938973.1|2132659_2133715_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLDGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWAMAEKGTEQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP044313.1|WP_000029329.1|2133726_2134263_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP044313.1|WP_001084084.1|2134259_2135822_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEVEKLREALLSLEHAFQFGPDSPSFMQDFEALTGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKMWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRFVRQIEEGQDADELLSKWNKEIWLFARQDFDERVFTNPYEPVNLERIMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP044313.1|WP_050938972.1|2135919_2138619_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDIAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGLQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDGSQRAGKVLICTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRARAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCIEQRQDPEMANVILVTDDESCGYSAMEGLTGKVG
>NZ_CP044313.1|WP_000956460.1|2138812_2138965_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP044313.1|WP_000039843.1|2139229_2139964_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP044313_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044313_2

2155663-2155996

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

5 spacers

The CRISPR arrays of NZ_CP044313_2

>merge|NZ_CP044313|2|2155663-2155996|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCATATACAGCAAACCTTCAGAATGCATTCCGGGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCCGTCTGCCTCCAGCCCAGCCCTGGATATTTCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGTTCACTCACGCAACGTCTGAGCGCGTTGACGGTTTATCCCCGCTGGCGCGGGGAACTCAGGGCCGCCGCTACCCCAGAAGTGCCACTCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGTATGCGTTCAATCACTGTCAGGCCTACTTCCGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP044313|2|2|2155663-2155996|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	ATATACAGCAAACCTTCAGAATGCATTCCGGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGTCTGCCTCCAGCCCAGCCCTGGATATTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGGTTCACTCACGCAACGTCTGAGCGCGTTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGGGCCGCCGCTACCCCAGAAGTGCCACTCCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTATGCGTTCAATCACTGTCAGGCCTACTTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP044313|2|2|2155663-2155996|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	ATATACAGCAAACCTTCAGAATGCATTCCGGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGTCTGCCTCCAGCCCAGCCCTGGATATTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGGTTCACTCACGCAACGTCTGAGCGCGTTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGGGCCGCCGCTACCCCAGAAGTGCCACTCCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTATGCGTTCAATCACTGTCAGGCCTACTTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP044313|2|2|2155664-2155996|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACTCA	TATACAGCAAACCTTCAGAATGCATTCCGGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CCGTCTGCCTCCAGCCCAGCCCTGGATATTTC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	GGTTCACTCACGCAACGTCTGAGCGCGTTGAC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	GGGCCGCCGCTACCCCAGAAGTGCCACTCCCC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	GTATGCGTTCAATCACTGTCAGGCCTACTTCC
GGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044313.1\|WP_050938970.1\|2152242_2153520_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP044313.1\|WP_001071648.1\|2161482_2162274_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP044313.1\|WP_001288227.1\|2157145_2157286_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044313.1\|WP_000039683.1\|2153546_2155025_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP044313.1\|WP_001199979.1\|2156335_2157007_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP044313.1\|WP_000581937.1\|2162679_2162928_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP044313.1\|WP_001299097.1\|2146569_2147430_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP044313.1\|WP_001299652.1\|2147426_2148206_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP044313.1\|WP_000046812.1\|2165287_2166589_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP044313.1\|WP_000036723.1\|2158231_2159530_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP044313.1\|WP_000254738.1\|2162344_2162680_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP044313.1\|WP_001130279.1\|2145846_2146422_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP044313.1\|WP_001268446.1\|2157299_2158172_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP044313.1\|WP_000147666.1\|2148183_2149593_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP044313.1\|WP_000210878.1\|2159617_2161255_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP044313.1\|WP_001364948.1\|2144307_2145579_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP044313.1\|WP_000109520.1\|2145569_2145830_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP044313.1\|WP_000226815.1\|2163005_2165240_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP044313.1\|WP_000021330.1\|2151138_2151924_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP044313.1\|WP_000059312.1\|2149614_2151069_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
NZ_CP044313.1\|WP_050938970.1\|2152242_2153520_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	9.37041e-30
NZ_CP044313.1\|WP_001071648.1\|2161482_2162274_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP044313.1\|WP_000039683.1\|2153546_2155025_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	9.76816e-108
NZ_CP044313.1\|WP_001199979.1\|2156335_2157007_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.23739e-155
NZ_CP044313.1\|WP_000581937.1\|2162679_2162928_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP044313.1\|WP_001299097.1\|2146569_2147430_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90
NZ_CP044313.1\|WP_001299652.1\|2147426_2148206_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
NZ_CP044313.1\|WP_000046812.1\|2165287_2166589_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP044313.1\|WP_000036723.1\|2158231_2159530_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP044313.1\|WP_000254738.1\|2162344_2162680_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP044313.1\|WP_001130279.1\|2145846_2146422_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	3.69704e-88
NZ_CP044313.1\|WP_001268446.1\|2157299_2158172_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	5.56011e-100
NZ_CP044313.1\|WP_000147666.1\|2148183_2149593_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_CP044313.1\|WP_000210878.1\|2159617_2161255_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP044313.1\|WP_001364948.1\|2144307_2145579_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.36174e-127
NZ_CP044313.1\|WP_000109520.1\|2145569_2145830_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.35112e-42
NZ_CP044313.1\|WP_000226815.1\|2163005_2165240_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP044313.1\|WP_000021330.1\|2151138_2151924_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.14687e-138
NZ_CP044313.1\|WP_000059312.1\|2149614_2151069_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82

>NZ_CP044313.1|WP_000039683.1|2153546_2155025_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNYFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP044313.1|WP_050938970.1|2152242_2153520_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMQWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP044313.1|WP_000021330.1|2151138_2151924_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAASCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP044313.1|WP_000059312.1|2149614_2151069_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP044313.1|WP_000147666.1|2148183_2149593_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP044313.1|WP_001299652.1|2147426_2148206_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP044313.1|WP_001299097.1|2146569_2147430_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP044313.1|WP_001130279.1|2145846_2146422_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKSAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP044313.1|WP_000109520.1|2145569_2145830_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP044313.1|WP_001364948.1|2144307_2145579_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEEEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLEPSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDILQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_CP044313.1|WP_001199979.1|2156335_2157007_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP044313.1|WP_001288227.1|2157145_2157286_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP044313.1|WP_001268446.1|2157299_2158172_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIKVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>NZ_CP044313.1|WP_000036723.1|2158231_2159530_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP044313.1|WP_000210878.1|2159617_2161255_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP044313.1|WP_001071648.1|2161482_2162274_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP044313.1|WP_000254738.1|2162344_2162680_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP044313.1|WP_000581937.1|2162679_2162928_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP044313.1|WP_000226815.1|2163005_2165240_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP044313.1|WP_000046812.1|2165287_2166589_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK

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Crispr_ID: NZ_CP044313_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044313_3

2745219-2745358

Orphan

Consensus_repeat	Method
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044313_3

>merge|NZ_CP044313|3|2745219-2745358|CRISPRCasFinder
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAAACGTAGGTCAGATAAGGTGTTTACGCCGCATCCGACTGCTGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAA

>NZ_CP044313|3|3|2745219-2745358|CRISPRCasFinder
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	ACGTAGGTCAGATAAGGTGTTTACGCCGCATCCGACTGCTGT
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044313.1\|WP_001307409.1\|2734490_2735246_+\|galactosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|182064
NZ_CP044313.1\|WP_050938907.1\|2740695_2741556_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
NZ_CP044313.1\|WP_001158034.1\|2744029_2744620_+\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
NZ_CP044313.1\|WP_000189314.1\|2748277_2748580_+\|DNA-damage-response-exodeoxyribonuclease-YhbQ	unknown	unknown	gnl\|CDD\|178979
NZ_CP044313.1\|WP_000246830.1\|2743614_2744010_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|129354
NZ_CP044313.1\|WP_032222356.1\|2745409_2746450_-\|permease	unknown	unknown	gnl\|CDD\|223773
NZ_CP044313.1\|WP_001045442.1\|2735645_2736230_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP044313.1\|WP_000130392.1\|2751884_2752892_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP044313.1\|WP_001136478.1\|2737034_2739551_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP044313.1\|WP_001295552.1\|2749063_2749588_-\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP044313.1\|WP_000908554.1\|2748566_2749070_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP044313.1\|WP_000044768.1\|2736309_2737005_+\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP044313.1\|WP_000646033.1\|2744629_2745205_+\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NZ_CP044313.1\|WP_000421305.1\|2749796_2750792_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP044313.1\|WP_000249103.1\|2741620_2743657_+\|penicillin-binding-protein-activator-LpoA	unknown	unknown	gnl\|CDD\|225649
NZ_CP044313.1\|WP_032251847.1\|2739561_2740653_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP044313.1\|WP_000084526.1\|2746522_2747158_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP044313.1\|WP_050938917.1\|2750800_2751679_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP044313.1\|WP_000037593.1\|2747285_2747804_+\|protein/nucleic-acid-deglycase	unknown	unknown	gnl\|CDD\|273591
NZ_CP044313.1\|WP_050938906.1\|2747783_2748227_-\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127

Protein	Function_ID	Function_description	E-value
NZ_CP044313.1\|WP_001307409.1\|2734490_2735246_+\|galactosamine-6-phosphate-isomerase	gnl\|CDD\|182064	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional.	9.0705e-147
NZ_CP044313.1\|WP_050938907.1\|2740695_2741556_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
NZ_CP044313.1\|WP_001158034.1\|2744029_2744620_+\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	5.61903e-143
NZ_CP044313.1\|WP_000189314.1\|2748277_2748580_+\|DNA-damage-response-exodeoxyribonuclease-YhbQ	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	3.58629e-45
NZ_CP044313.1\|WP_000246830.1\|2743614_2744010_+\|YraN-family-protein	gnl\|CDD\|129354	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved].	4.16818e-63
NZ_CP044313.1\|WP_032222356.1\|2745409_2746450_-\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	5.61315e-63
NZ_CP044313.1\|WP_001045442.1\|2735645_2736230_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.5084e-31
NZ_CP044313.1\|WP_000130392.1\|2751884_2752892_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP044313.1\|WP_001136478.1\|2737034_2739551_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP044313.1\|WP_001295552.1\|2749063_2749588_-\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	6.78212e-85
NZ_CP044313.1\|WP_000908554.1\|2748566_2749070_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.31299e-64
NZ_CP044313.1\|WP_000044768.1\|2736309_2737005_+\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	5.43624e-78
NZ_CP044313.1\|WP_000646033.1\|2744629_2745205_+\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.97056e-117
NZ_CP044313.1\|WP_000421305.1\|2749796_2750792_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.87234e-118
NZ_CP044313.1\|WP_000249103.1\|2741620_2743657_+\|penicillin-binding-protein-activator-LpoA	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	3.56622e-141
NZ_CP044313.1\|WP_032251847.1\|2739561_2740653_+\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	5.89204e-21
NZ_CP044313.1\|WP_000084526.1\|2746522_2747158_-\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.35379e-66
NZ_CP044313.1\|WP_050938917.1\|2750800_2751679_+\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP044313.1\|WP_000037593.1\|2747285_2747804_+\|protein/nucleic-acid-deglycase	gnl\|CDD\|273591	TIGR01382, Uncharacterized_protein_MJ0967, intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.17183e-85
NZ_CP044313.1\|WP_050938906.1\|2747783_2748227_-\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	2.12769e-100

>NZ_CP044313.1|WP_000646033.1|2744629_2745205_+|divisome-associated-lipoprotein-YraP
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK
>NZ_CP044313.1|WP_001158034.1|2744029_2744620_+|DnaA-initiator-associating-protein-DiaA
MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD
>NZ_CP044313.1|WP_000246830.1|2743614_2744010_+|YraN-family-protein
MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVNERGGEIDLIMREGRTTIFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGSFDTVDCRFDVVAFTGNEVEWIKDAFNDHS
>NZ_CP044313.1|WP_000249103.1|2741620_2743657_+|penicillin-binding-protein-activator-LpoA
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDAQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPVS
>NZ_CP044313.1|WP_050938907.1|2740695_2741556_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPADALHTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG
>NZ_CP044313.1|WP_032251847.1|2739561_2740653_+|fimbrial-protein
MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVTVNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQTGYYKLNDSLDIKTTLQANDIPGLTTDQVVSVNTRFTQIKSSTVYSAATQTGVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNVPDVGIRIENLGGGVANIPFQNGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVIVR
>NZ_CP044313.1|WP_001136478.1|2737034_2739551_+|fimbrial-biogenesis-outer-membrane-usher-protein
MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNRHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
>NZ_CP044313.1|WP_000044768.1|2736309_2737005_+|molecular-chaperone
MSKRTFAVIITLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWTSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
>NZ_CP044313.1|WP_001045442.1|2735645_2736230_+|type-1-fimbrial-protein
MNKVTKTAIVGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRSVGDRSPKIPFTIPLVNCPVTGWEHDNGNVEASFRLWLETRDNGTVPNFPNLAKVGSFAGTAATGVGIRIDDAESGNLMPLNAMGNDNTVYQIPADSNGIVNVDLIAYYVSTVEASEITPGEADAVVNVTLDYR
>NZ_CP044313.1|WP_001307409.1|2734490_2735246_+|galactosamine-6-phosphate-isomerase
MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIRSKPDAVICLATGATPLLTYHYLVEKIHQQQVDISQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTTGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPASFLWLHSNFICLINT
>NZ_CP044313.1|WP_032222356.1|2745409_2746450_-|permease
MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWQPYYGKAFTAAETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPLLNPATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF
>NZ_CP044313.1|WP_000084526.1|2746522_2747158_-|NAD(P)H-binding-protein
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE
>NZ_CP044313.1|WP_000037593.1|2747285_2747804_+|protein/nucleic-acid-deglycase
MSKKIAVLISDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>NZ_CP044313.1|WP_050938906.1|2747783_2748227_-|YhbP-family-protein
METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFYILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARNAYNRRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA
>NZ_CP044313.1|WP_000189314.1|2748277_2748580_+|DNA-damage-response-exodeoxyribonuclease-YhbQ
MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKGELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD
>NZ_CP044313.1|WP_000908554.1|2748566_2749070_-|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEYHEHFNRF
>NZ_CP044313.1|WP_001295552.1|2749063_2749588_-|SCP2-domain-containing-protein
MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQALDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMKTAPETKQTSVGEPC
>NZ_CP044313.1|WP_000421305.1|2749796_2750792_+|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKADPQNFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ
>NZ_CP044313.1|WP_050938917.1|2750800_2751679_+|U32-family-peptidase
MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQSLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA
>NZ_CP044313.1|WP_000130392.1|2751884_2752892_+|LLM-class-flavin-dependent-oxidoreductase
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPNVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG

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Crispr_ID: NZ_CP044313_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044313_4

3730927-3731004

Orphan

Consensus_repeat	Method
GGCCGGATAAGGCGTTTACGCCGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044313_4

>merge|NZ_CP044313|4|3730927-3731004|CRISPRCasFinder
GGCCGGATAAGGCGTTTACGCCGCATTCGACAACCAACGCCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCAT

>NZ_CP044313|4|4|3730927-3731004|CRISPRCasFinder
GGCCGGATAAGGCGTTTACGCCGCAT	TCGACAACCAACGCCTGTCAAATGTA
GGCCGGATAAGGCGTTTACGCCGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044313.1\|WP_000646078.1\|3738678_3739287_+\|repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP044313.1\|WP_001297295.1\|3734069_3734567_+\|chorismate-lyase	unknown	unknown	gnl\|CDD\|236949
NZ_CP044313.1\|WP_001593826.1\|3718499_3719237_+\|capsule-biosynthesis-GfcC-family-protein	unknown	unknown	gnl\|CDD\|368817
NZ_CP044313.1\|WP_000179165.1\|3728386_3729502_+\|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK	unknown	unknown	gnl\|CDD\|182893
NZ_CP044313.1\|WP_001295279.1\|3721379_3721658_-\|periplasmic-protein	unknown	unknown	gnl\|CDD\|293694
NZ_CP044313.1\|WP_000973658.1\|3729573_3730914_+\|maltoporin-LamB	unknown	unknown	gnl\|CDD\|236481
NZ_CP044313.1\|WP_000783444.1\|3731117_3732038_+\|maltose-operon-protein-MalM	unknown	unknown	gnl\|CDD\|236716
NZ_CP044313.1\|WP_000017354.1\|3735606_3738030_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	unknown	unknown	gnl\|CDD\|235325
NZ_CP044313.1\|WP_001298868.1\|3743233_3744271_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NZ_CP044313.1\|WP_001030593.1\|3740800_3741010_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|182452
NZ_CP044313.1\|WP_000695387.1\|3726831_3728022_-\|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE	unknown	unknown	gnl\|CDD\|236533
NZ_CP044313.1\|WP_001097291.1\|3722381_3723857_-\|D-xylose-transporter-XylE	unknown	unknown	gnl\|CDD\|182225
NZ_CP044313.1\|WP_001252058.1\|3724228_3725119_-\|maltose-ABC-transporter-permease-MalG	unknown	unknown	gnl\|CDD\|182891
NZ_CP044313.1\|WP_001298861.1\|3739359_3740685_+\|MATE-family-efflux-transporter-DinF	unknown	unknown	gnl\|CDD\|182413
NZ_CP044313.1\|WP_001295691.1\|3741051_3741567_-\|zinc-uptake-transcriptional-repressor-Zur	unknown	unknown	gnl\|CDD\|183251
NZ_CP044313.1\|WP_001364952.1\|3719236_3721333_+\|YjbH-domain-containing-protein	unknown	unknown	gnl\|CDD\|377600
NZ_CP044313.1\|WP_001297290.1\|3725133_3726678_-\|maltose-ABC-transporter-permease-MalF	unknown	unknown	gnl\|CDD\|236816
NZ_CP044313.1\|WP_000202902.1\|3721927_3722338_+\|phosphate-starvation-inducible-protein-PsiE	unknown	unknown	gnl\|CDD\|235075
NZ_CP044313.1\|WP_000455228.1\|3734579_3735452_+\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237229
NZ_CP044313.1\|WP_000002907.1\|3738200_3738569_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|223888

Protein	Function_ID	Function_description	E-value
NZ_CP044313.1\|WP_000646078.1\|3738678_3739287_+\|repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.72318e-115
NZ_CP044313.1\|WP_001297295.1\|3734069_3734567_+\|chorismate-lyase	gnl\|CDD\|236949	PRK11655, ubiC, chorismate pyruvate lyase; Provisional.	2.53078e-103
NZ_CP044313.1\|WP_001593826.1\|3718499_3719237_+\|capsule-biosynthesis-GfcC-family-protein	gnl\|CDD\|368817	pfam06251, Caps_synth_GfcC, Capsule biosynthesis GfcC. Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organisation of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 4 capsule biosynthesis. These proteins have a beta-grasp fold. Two beta-grasp domains, D2 and D3, are arranged in tandem. There is a C-terminal amphipathic helix which packs against D3. A helical hairpin insert in D2 binds to D3 and constrains its position, a conserved arginine residue at the end of this hairpin is essential for structural integrity.	5.88717e-111
NZ_CP044313.1\|WP_000179165.1\|3728386_3729502_+\|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK	gnl\|CDD\|182893	PRK11000, PRK11000, maltose/maltodextrin ABC transporter ATP-binding protein MalK.	0
NZ_CP044313.1\|WP_001295279.1\|3721379_3721658_-\|periplasmic-protein	gnl\|CDD\|293694	pfam17089, YjbT, Uncharacterized protein family. This is a family of bacterial proteins. The function is unknown.	1.20752e-55
NZ_CP044313.1\|WP_000973658.1\|3729573_3730914_+\|maltoporin-LamB	gnl\|CDD\|236481	PRK09360, lamB, maltoporin LamB.	0
NZ_CP044313.1\|WP_000783444.1\|3731117_3732038_+\|maltose-operon-protein-MalM	gnl\|CDD\|236716	PRK10564, PRK10564, maltose operon protein MalM.	0
NZ_CP044313.1\|WP_000017354.1\|3735606_3738030_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	gnl\|CDD\|235325	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB.	0
NZ_CP044313.1\|WP_001298868.1\|3743233_3744271_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NZ_CP044313.1\|WP_001030593.1\|3740800_3741010_+\|CsbD-family-protein	gnl\|CDD\|182452	PRK10428, PRK10428, hypothetical protein; Provisional.	6.67108e-33
NZ_CP044313.1\|WP_000695387.1\|3726831_3728022_-\|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE	gnl\|CDD\|236533	PRK09474, malE, maltose/maltodextrin ABC transporter substrate-binding protein MalE.	0
NZ_CP044313.1\|WP_001097291.1\|3722381_3723857_-\|D-xylose-transporter-XylE	gnl\|CDD\|182225	PRK10077, xylE, D-xylose transporter XylE; Provisional.	0
NZ_CP044313.1\|WP_001252058.1\|3724228_3725119_-\|maltose-ABC-transporter-permease-MalG	gnl\|CDD\|182891	PRK10998, malG, maltose ABC transporter permease MalG.	0
NZ_CP044313.1\|WP_001298861.1\|3739359_3740685_+\|MATE-family-efflux-transporter-DinF	gnl\|CDD\|182413	PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional.	0
NZ_CP044313.1\|WP_001295691.1\|3741051_3741567_-\|zinc-uptake-transcriptional-repressor-Zur	gnl\|CDD\|183251	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur.	1.33493e-121
NZ_CP044313.1\|WP_001364952.1\|3719236_3721333_+\|YjbH-domain-containing-protein	gnl\|CDD\|377600	pfam06082, YjbH, Exopolysaccharide biosynthesis protein YbjH. YjbH is a family of Gram-negative beta-barrel outer-membrane lipoproteins that act as putative porins. YbjH is one of four gene-products expressed from an operon, yjbEFGH, which is regulated by the Rcs phosphorelay in a RcsA-dependent manner, similar to that of other exopolysaccharide biosynthetic pathways. It is highly possible that the yjbEFGH operon encodes a system involved in EPS secretion since none of the products is predicted to have enzymic activity, the products are all secreted and YbjH and F are predicted to be beta-barrel lipoproteins similar to porins. It may be that the operon products play some role in biofilm formation and/or matrix production.	0
NZ_CP044313.1\|WP_001297290.1\|3725133_3726678_-\|maltose-ABC-transporter-permease-MalF	gnl\|CDD\|236816	PRK10999, malF, maltose ABC transporter permease MalF.	0
NZ_CP044313.1\|WP_000202902.1\|3721927_3722338_+\|phosphate-starvation-inducible-protein-PsiE	gnl\|CDD\|235075	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional.	2.67759e-56
NZ_CP044313.1\|WP_000455228.1\|3734579_3735452_+\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237229	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase.	0
NZ_CP044313.1\|WP_000002907.1\|3738200_3738569_+\|diacylglycerol-kinase	gnl\|CDD\|223888	COG0818, DgkA, Diacylglycerol kinase [Cell envelope biogenesis, outer membrane].	3.86505e-52

>NZ_CP044313.1|WP_000973658.1|3729573_3730914_+|maltoporin-LamB
MMITLRKLPLAVAVAAGVMSAQAMAVDFHGYARSGIGWTGSGGEQQCFQTTGAQSKYRLGNECETYAELKLGQEVWKEGDKSFYFDTNVAYSVAQQNDWEATDPAFREANVQGKNLIEWLPGSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGLENIDVGFGKLSLAATRSSEAGGSSSFASNNIYDYTNETANDVFDVRLAQMEINPGGTLELGVDYGRANLRDNYRLVDGASKDGWLFTAEHTQSVLKGFNKFVVQYATDSMTSQGKGLSQGSGVAFDNEKFAYNINNNGHMLRILDHGAISMGDNWDMMYVGMYQDINWDNDNGTKWWTVGIRPMYKWTPIMSTVMEIGYDNVESQRTGDKNNQYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEKWGYDYNGDSKVNPNYGKAVPADFNGGSFGRGDSDEWTFGAQMEIWW
>NZ_CP044313.1|WP_000179165.1|3728386_3729502_+|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK
MASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTACRRLHKEPGV
>NZ_CP044313.1|WP_000695387.1|3726831_3728022_-|maltose/maltodextrin-ABC-transporter-substrate-binding-protein-MalE
MKIKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITK
>NZ_CP044313.1|WP_001297290.1|3725133_3726678_-|maltose-ABC-transporter-permease-MalF
MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKFGGEQKLQLKETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDGTLTNNQSGVKYRPNNQIGFYQSITADGNWGDEKLSPGYTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD
>NZ_CP044313.1|WP_001252058.1|3724228_3725119_-|maltose-ABC-transporter-permease-MalG
MAMVQPKSQKARLFITHLLLLLFIAAIMFPLLMVVAISLRQGNFATGSLIPEQISWDHWKLALGFSVEQADGRITPPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWLVNGLTAGGVKG
>NZ_CP044313.1|WP_001097291.1|3722381_3723857_-|D-xylose-transporter-XylE
MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSSRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSILQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQTATL
>NZ_CP044313.1|WP_000202902.1|3721927_3722338_+|phosphate-starvation-inducible-protein-PsiE
MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLADVLFAPEQTSKYELVEGLVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHKSPLDVLIYSAAILLLVITLWLCNSKRLKRE
>NZ_CP044313.1|WP_001295279.1|3721379_3721658_-|periplasmic-protein
MKRNLIKVVKMKPYFAALMLSVSVLPAYAGPLGTADKADLPQSNVSSPMMAQSLRQPDLQPISTDRKTECFRLYTPDRKPGVNCVPDGSTGH
>NZ_CP044313.1|WP_001364952.1|3719236_3721333_+|YjbH-domain-containing-protein
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLCPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEPLGHETKLAQKRVEPVVPKSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYTNPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR
>NZ_CP044313.1|WP_001593826.1|3718499_3719237_+|capsule-biosynthesis-GfcC-family-protein
MIKQTIVALLLSVGASSVFAAGTVKVFSNGSSEAKTLTGAEHLIDLVGQPRLANSWWPGAVMSEELATAAALRQQQALLARLAELAADSSADDAAAINALRQQIQALKVTGRQKINLDPDIVRVAERGNPPLQGNYTLWVGPPPSTVTLFGLISRPGKQPFTPGRDVASYLSGQNLLSGADRSYAWVVYPDGRTQKAPVAYWNKRHVEPMPGSIIYVGLADSVWSETPDALNADILQTLTQRIPQ
>NZ_CP044313.1|WP_000783444.1|3731117_3732038_+|maltose-operon-protein-MalM
MKMNKSLIALCLSAGLLASAPGISLADVNYVPQNTSDAPAIPSAALQQLTWTPVDQSKTQTTQLATGGQQLNVPGISGPVAAYSVPANIGELTLTLTSEVNKQTSVFAPNVLILDQNMTPSAFFPSSYFTYQEPGVMSADRLEGVMRLTPALGQQKLYVLVFTTEKDLQQTTQLLDPAKAYAKGVGNSIPDIPDPVARHTTDGLLKLKVKTNSSSSVLVGPLFGSSAPAPVTVGNTAAPAVAAPAPAPVKKSEPMLNDTESYFNTAIKNAVAKGDVDKALKLLDEAERLGSTSARSTFISSVKGKG
>NZ_CP044313.1|WP_001297295.1|3734069_3734567_+|chorismate-lyase
MSHPALTQLRALRYFKEIPALEPQLLDWLLLEDSMTKRFEQQGKTVSVTMIREGFVEQNEIPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSGPELALQKLGKTPLGRYLFTSSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLPASPLY
>NZ_CP044313.1|WP_000455228.1|3734579_3735452_+|4-hydroxybenzoate-octaprenyltransferase
MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVVLVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAAVSESVPLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGILQIGVLALMAIIGELNGLGWGYYWSIVVAGALFVYQQKLIANREREACFKAFMNNNYVGLVLFLGLAMSYWHF
>NZ_CP044313.1|WP_000017354.1|3735606_3738030_-|glycerol-3-phosphate-1-O-acyltransferase-PlsB
MSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRPIMYVLPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGTLLPRYVFIHGGPRVFTYYTPKEESIKLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLGRDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFNKLLASRAIAKAVEDEARSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWNRLYQGINVHNAERVRQLAHDGHELVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGINLNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTGRLLDPKTGTLSMTIQAMLRGGTRPITLIPIYIGYEHVMEVGTYAKELRGATKEKESLPQMLRGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPDWRESIDPIEAVRPAWLTPTVNNIAADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLTEQLNCYLDLMRNVPYSTDSTVPSASASELIDHALQMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLVLPSLMAAIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRDELPDVIDALANEMQRQGLITLQDDELHINPAHSRTLQLLAAGARETLQRYAITFWLLSANPSINRGTLEKESRTVAQRLSVLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPAETMKVYQLLAELITSDVRLTIESATQGEG
>NZ_CP044313.1|WP_000002907.1|3738200_3738569_+|diacylglycerol-kinase
MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCILLWSHFG
>NZ_CP044313.1|WP_000646078.1|3738678_3739287_+|repressor-LexA
MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGDWL
>NZ_CP044313.1|WP_001298861.1|3739359_3740685_+|MATE-family-efflux-transporter-DinF
MAFLTSSDKALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYGAKNPQALARALVQPLLLALGAGALIALLRTPIIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKILKLRGISGEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIVAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSVVYLLAGEHIIALLTSLTQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRHWRNGTWFAAT
>NZ_CP044313.1|WP_001030593.1|3740800_3741010_+|CsbD-family-protein
MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNEYRW
>NZ_CP044313.1|WP_001295691.1|3741051_3741567_-|zinc-uptake-transcriptional-repressor-Zur
MEKTTTQELLAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQPTHTSAMFICDRCGAVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCAACVEVEACRHPEQCQHDHSVQVKKKPR
>NZ_CP044313.1|WP_001298868.1|3743233_3744271_+|tRNA-dihydrouridine(20/20a)-synthase-DusA
MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVADKR

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Crispr_ID: NZ_CP044313_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044313_5

4275940-4276055

Orphan

Consensus_repeat	Method
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044313_5

>merge|NZ_CP044313|5|4275940-4276055|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAAACACAGCGCGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTT

>NZ_CP044313|5|5|4275940-4276055|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	GAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAAACACAGCGCGTAGGCCA
GATAAGACGCGTCAGCGTCGCATCAGGCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044313.1\|WP_001117011.1\|4269682_4272589_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP044313.1\|WP_000235700.1\|4283464_4285075_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP044313.1\|WP_001300811.1\|4279626_4280505_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP044313.1\|WP_000035637.1\|4272753_4275105_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP044313.1\|WP_000525176.1\|4269011_4269671_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP044313.1\|WP_021534283.1\|4277587_4279288_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP044313.1\|WP_000610901.1\|4261944_4262322_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP044313.1\|WP_001065381.1\|4262324_4263146_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP044313.1\|WP_000800453.1\|4264131_4265418_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP044313.1\|WP_001248770.1\|4287941_4288073_+\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
NZ_CP044313.1\|WP_000151734.1\|4276074_4277577_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP044313.1\|WP_000399648.1\|4281636_4282617_+\|IS110-like-element-IS621-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP044313.1\|WP_000916280.1\|4282782_4283481_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP044313.1\|WP_001148403.1\|4280590_4281355_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP044313.1\|WP_001297366.1\|4286197_4287853_-\|DNA-binding-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP044313.1\|WP_000241259.1\|4263142_4264132_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP044313.1\|WP_151039450.1\|4265470_4267825_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP044313.1\|WP_001200573.1\|4268079_4268895_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP044313.1\|WP_000888642.1\|4275179_4275875_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP044313.1\|WP_001295536.1\|4285050_4286034_-\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883

Protein	Function_ID	Function_description	E-value
NZ_CP044313.1\|WP_001117011.1\|4269682_4272589_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP044313.1\|WP_000235700.1\|4283464_4285075_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP044313.1\|WP_001300811.1\|4279626_4280505_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP044313.1\|WP_000035637.1\|4272753_4275105_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP044313.1\|WP_000525176.1\|4269011_4269671_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159
NZ_CP044313.1\|WP_021534283.1\|4277587_4279288_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP044313.1\|WP_000610901.1\|4261944_4262322_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP044313.1\|WP_001065381.1\|4262324_4263146_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.76119e-148
NZ_CP044313.1\|WP_000800453.1\|4264131_4265418_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP044313.1\|WP_001248770.1\|4287941_4288073_+\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924
NZ_CP044313.1\|WP_000151734.1\|4276074_4277577_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP044313.1\|WP_000399648.1\|4281636_4282617_+\|IS110-like-element-IS621-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.78707e-27
NZ_CP044313.1\|WP_000916280.1\|4282782_4283481_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	5.43465e-163
NZ_CP044313.1\|WP_001148403.1\|4280590_4281355_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.87417e-49
NZ_CP044313.1\|WP_001297366.1\|4286197_4287853_-\|DNA-binding-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP044313.1\|WP_000241259.1\|4263142_4264132_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP044313.1\|WP_151039450.1\|4265470_4267825_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP044313.1\|WP_001200573.1\|4268079_4268895_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.09407e-169
NZ_CP044313.1\|WP_000888642.1\|4275179_4275875_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.31794e-177
NZ_CP044313.1\|WP_001295536.1\|4285050_4286034_-\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0

>NZ_CP044313.1|WP_000888642.1|4275179_4275875_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRLVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIATGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP044313.1|WP_000035637.1|4272753_4275105_-|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDIRNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYIRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP044313.1|WP_001117011.1|4269682_4272589_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP044313.1|WP_000525176.1|4269011_4269671_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP044313.1|WP_001200573.1|4268079_4268895_+|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP044313.1|WP_151039450.1|4265470_4267825_-|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTNYYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL
>NZ_CP044313.1|WP_000800453.1|4264131_4265418_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NZ_CP044313.1|WP_000241259.1|4263142_4264132_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYSPNSPAQPQTTGTLTLLPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP044313.1|WP_001065381.1|4262324_4263146_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES
>NZ_CP044313.1|WP_000610901.1|4261944_4262322_-|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP044313.1|WP_000151734.1|4276074_4277577_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP044313.1|WP_021534283.1|4277587_4279288_-|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPCSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>NZ_CP044313.1|WP_001300811.1|4279626_4280505_+|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP044313.1|WP_001148403.1|4280590_4281355_+|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV
>NZ_CP044313.1|WP_000399648.1|4281636_4282617_+|IS110-like-element-IS621-family-transposase
MEHELHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELVSWLKGHKIDHAHICIEATGTYMEPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTDTVDARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTETAREVQRPSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYIGLKDRFAHARQFAAFAGLTPRRYESGSSVRGASRMSKAGHVSLRRALYMPAMVATSKTEWGRAFRDRLAANGKKGKVILGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA
>NZ_CP044313.1|WP_000916280.1|4282782_4283481_-|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTMPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTDELLSGKARASALLGITG
>NZ_CP044313.1|WP_000235700.1|4283464_4285075_-|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>NZ_CP044313.1|WP_001295536.1|4285050_4286034_-|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NZ_CP044313.1|WP_001297366.1|4286197_4287853_-|DNA-binding-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNTTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>NZ_CP044313.1|WP_001248770.1|4287941_4288073_+|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES

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Crispr_ID: NZ_CP044313_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044313_6

4489199-4489352

Orphan

Consensus_repeat	Method
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044313_6

>merge|NZ_CP044313|6|4489199-4489352|CRISPRCasFinder
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCGGTTATGCGCAGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAACCTGTGCTGGATCGGTAGGCCGGATAAGGCG

>NZ_CP044313|6|6|4489199-4489352|CRISPRCasFinder
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	TTTACGCCGCATCCGGCGGTTATGCGCAGATGCCTGATGCGACGCTGA
CGCGTCTTATCATGCCTACAAACCTGTGCTGGATCGGTAGGCCGGATAAGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044313.1\|WP_001291990.1\|4497301_4497760_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP044313.1\|WP_001059855.1\|4493078_4493531_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP044313.1\|WP_000174677.1\|4499153_4499555_+\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP044313.1\|WP_072095554.1\|4491170_4491956_+\|putative-lateral-flagellar-export/assembly-protein-LafU	unknown	unknown	gnl\|CDD\|235860
NZ_CP044313.1\|WP_000284050.1\|4485183_4485762_+\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP044313.1\|WP_001323598.1\|4489486_4491226_-\|flagellar-type-III-secretion-system-protein-FlhA	unknown	unknown	gnl\|CDD\|224217
NZ_CP044313.1\|WP_000189541.1\|4497851_4499096_+\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP044313.1\|WP_001293016.1\|4495583_4497041_-\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP044313.1\|WP_000602112.1\|4494912_4495527_+\|peptide-chain-release-factor-H	unknown	unknown	gnl\|CDD\|181271
NZ_CP044313.1\|WP_050940102.1\|4474906_4479160_+\|RHS-repeat-protein	unknown	unknown	gnl\|CDD\|225750
NZ_CP044313.1\|WP_000093939.1\|4487746_4488496_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP044313.1\|WP_001118055.1\|4481059_4481830_-\|2-oxoglutaramate-amidase	unknown	unknown	gnl\|CDD\|182461
NZ_CP044313.1\|WP_000973093.1\|4482499_4484944_-\|acyl-CoA-dehydrogenase-FadE	unknown	unknown	gnl\|CDD\|236528
NZ_CP044313.1\|WP_000532698.1\|4481983_4482457_+\|C-lysozyme-inhibitor	unknown	unknown	gnl\|CDD\|182187
NZ_CP044313.1\|WP_000006256.1\|4488671_4489169_+\|REP-associated-tyrosine-transposase-RayT	unknown	unknown	gnl\|CDD\|224854
NZ_CP044313.1\|WP_001226164.1\|4492026_4493082_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP044313.1\|WP_151039269.1\|4486705_4487446_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|225577
NZ_CP044313.1\|WP_000978828.1\|4479171_4479621_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044313.1\|WP_001346146.1\|4493776_4494430_+\|RNA-ligase-RtcB-family-protein	unknown	unknown	gnl\|CDD\|181972
NZ_CP044313.1\|WP_000333380.1\|4485967_4486735_+\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525

Protein	Function_ID	Function_description	E-value
NZ_CP044313.1\|WP_001291990.1\|4497301_4497760_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	4.12435e-113
NZ_CP044313.1\|WP_001059855.1\|4493078_4493531_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.45593e-104
NZ_CP044313.1\|WP_000174677.1\|4499153_4499555_+\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.11584e-87
NZ_CP044313.1\|WP_072095554.1\|4491170_4491956_+\|putative-lateral-flagellar-export/assembly-protein-LafU	gnl\|CDD\|235860	PRK06778, PRK06778, hypothetical protein; Validated.	1.51188e-173
NZ_CP044313.1\|WP_000284050.1\|4485183_4485762_+\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	1.61173e-142
NZ_CP044313.1\|WP_001323598.1\|4489486_4491226_-\|flagellar-type-III-secretion-system-protein-FlhA	gnl\|CDD\|224217	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP044313.1\|WP_001293016.1\|4495583_4497041_-\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP044313.1\|WP_000602112.1\|4494912_4495527_+\|peptide-chain-release-factor-H	gnl\|CDD\|181271	PRK08179, prfH, peptide chain release factor-like protein; Reviewed.	4.7824e-132
NZ_CP044313.1\|WP_050940102.1\|4474906_4479160_+\|RHS-repeat-protein	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	6.46291e-135
NZ_CP044313.1\|WP_000093939.1\|4487746_4488496_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	3.06441e-41
NZ_CP044313.1\|WP_001118055.1\|4481059_4481830_-\|2-oxoglutaramate-amidase	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0
NZ_CP044313.1\|WP_000973093.1\|4482499_4484944_-\|acyl-CoA-dehydrogenase-FadE	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NZ_CP044313.1\|WP_000532698.1\|4481983_4482457_+\|C-lysozyme-inhibitor	gnl\|CDD\|182187	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional.	9.39999e-93
NZ_CP044313.1\|WP_000006256.1\|4488671_4489169_+\|REP-associated-tyrosine-transposase-RayT	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.32036e-43
NZ_CP044313.1\|WP_001226164.1\|4492026_4493082_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP044313.1\|WP_151039269.1\|4486705_4487446_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	8.21313e-117
NZ_CP044313.1\|WP_000189541.1\|4497851_4499096_+\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP044313.1\|WP_001346146.1\|4493776_4494430_+\|RNA-ligase-RtcB-family-protein	gnl\|CDD\|181972	PRK09588, PRK09588, hypothetical protein; Reviewed.	2.67338e-113
NZ_CP044313.1\|WP_000333380.1\|4485967_4486735_+\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	8.29603e-146

>NZ_CP044313.1|WP_000006256.1|4488671_4489169_+|REP-associated-tyrosine-transposase-RayT
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDINAGERIIL
>NZ_CP044313.1|WP_000093939.1|4487746_4488496_+|C40-family-peptidase
MSSFLLGRFLHPGVFSLCVLLPLFASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILEAKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGENIRVSRLAEPFWQDHFLGARRILTEETIL
>NZ_CP044313.1|WP_151039269.1|4486705_4487446_-|L,D-transpeptidase-family-protein
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKDLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
>NZ_CP044313.1|WP_000333380.1|4485967_4486735_+|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV
>NZ_CP044313.1|WP_000284050.1|4485183_4485762_+|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK
>NZ_CP044313.1|WP_000973093.1|4482499_4484944_-|acyl-CoA-dehydrogenase-FadE
MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLCSINVDDFDPEELATKPVKLPEKVRKVEAA
>NZ_CP044313.1|WP_000532698.1|4481983_4482457_+|C-lysozyme-inhibitor
MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK
>NZ_CP044313.1|WP_001118055.1|4481059_4481830_-|2-oxoglutaramate-amidase
MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQNDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAIYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMVALREYREKFPAWQDADEFRLR
>NZ_CP044313.1|WP_000978828.1|4479171_4479621_+|hypothetical-protein
MMKYLMVLLSLFSGSVLGMGRVNELCGIDSVKTIEIINLPSYVTTLVPLSKEGLNEIYRYKVVVNEISDLYAGKIIDLLQMKYFRKEKYNNIRWGVSIISKGNNKCEIYFDAFGECGSVNGINVCFEKNEMIGWIKKEIPLLSQKIGGL
>NZ_CP044313.1|WP_050940102.1|4474906_4479160_+|RHS-repeat-protein
MGGKPAARQGDMTRKGLDIVQGSAGVLIGAPTGVACSVCPGGITYANPVNPLLDAKVLPGETDLALPGPLPFILSRAYSSYRTRTPAPVGVFGPGWKAPFDIRLQIRDEGLILNDSGGRSIHFEPLFPGEISYSRSESLWLARGGVAAQHSSQPLSALWQVLPEDVRLSPHVYLATNSLQGPWWILSWPERVPGADEVLPPEPPAYRVLTGVVDGFGRTLAFHRAAEGDVAGAVTGVTDGAGRRFHLVLTTQAQRAEVFRKQRATSLSSPAGPRSASSSLVFPDTLPAGTGYGTDNGIRLEAVWLTHDPAYPDEQPTAPLARYTYTAGGELRAVYDRSGTQVRGFTYDAEHAGRMVAHHYAGRPESCYRYDDTGRVTEQVNPEGLDYRFEYGESRVIITDSLNRREVLYTEGEGGLKRVVKKEHADGSITRSEYDEAGRLKAQTDAAGRRTEYSLHMASGAVTAVTGPDGRTVRYSYNSQRQVTSVTYPDGLRSSREYDEKGRLTAETSRSGETTRYSYDDPASELPTGIQDATGSTKQMAWSRYGQLLAFTDCSGYTTRYEYDRYGQQIAVHREEGISTYSSYNPRGQLVSQKDAQGREIRYEYSAAGDLTATVSPDGKRSTIEYDKRGRPVSVTEGGLTRSMGYDAAGRITVLTNENGSQSTFRYDPVDRLTEQRGFDGRTQRYHYDLTGKLTQSEDEGLITLWHYDASDRITHRTVNGDPAEQWQYDEHGWLTTLSHTCEGHRVSVHYGYDDKGRLTGERQTVENPETGEMLWEHETGHAYSEQGLATRQEPDGLPPVEWLTYGSGYLAGMKLGGTPLVEYTRDRLHRETARSFGGAGSTAGYEQATAYTLTGQLQSRHLNLPQLDCDYTWNDNGQLVRISGPQECREYRYSGTGRLTGVHTTAANLDIDIPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKTDRIPEGVIRMHDERTHHYHYDSQHRLVFYTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERDLTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVYQPGSFTPLLRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEESQQWLAQCGLTAEQMAAQLEAEYIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGEESAQHLQQSLRLPGQQYDEESGLYYNRNRYYDPLQGRYITQDPIGLRGEWNLYKYPLNPVRFIDSLGLKFHVNGDPSDFNQAVEYLKQDSQMKETIDFLSSSEETINIEYIEGTNVRFNSNNMAIYWNSRASLFCSTELNSKSQSPALGLGHEFAHAQYYLLDKENFMALLSRTDKKYENKEEARVITIIESRAAKTLGECTRGAHSGLPFYRVDGPLQTMKITGTPE
>NZ_CP044313.1|WP_001323598.1|4489486_4491226_-|flagellar-type-III-secretion-system-protein-FlhA
MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRISDNGDITHDVRHQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSAVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM
>NZ_CP044313.1|WP_072095554.1|4491170_4491956_+|putative-lateral-flagellar-export/assembly-protein-LafU
MTTIKLIVNSVSKSERESIIAALHGQSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKRLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRTR
>NZ_CP044313.1|WP_001226164.1|4492026_4493082_+|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL
>NZ_CP044313.1|WP_001059855.1|4493078_4493531_+|GNAT-family-N-acetyltransferase
MNNIQIRDYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAKLVGFITCVEHYIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQTVKQQRVECRGEWFINFYMRYKQQH
>NZ_CP044313.1|WP_001346146.1|4493776_4494430_+|RNA-ligase-RtcB-family-protein
MGNYIRPLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGRFYPALVGNDIGCGMALWQTDILTRKYNADKFEKRLSDLDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQVDQIINAELFALAGLDAQHLQLLVHSGSRGGGSLFYSGILPRSRIMVCLKAVTTRYGILRNMTMRWRLRVLIAR
>NZ_CP044313.1|WP_000602112.1|4494912_4495527_+|peptide-chain-release-factor-H
MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADEQEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG
>NZ_CP044313.1|WP_001293016.1|4495583_4497041_-|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDVLKSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK
>NZ_CP044313.1|WP_001291990.1|4497301_4497760_+|xanthine-phosphoribosyltransferase
MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR
>NZ_CP044313.1|WP_000189541.1|4497851_4499096_+|esterase-FrsA
MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITDWIEKRLC
>NZ_CP044313.1|WP_000174677.1|4499153_4499555_+|sigma-factor-binding-protein-Crl
MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDEPVKLTA

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Crispr_ID: NZ_CP044313_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044313_7

5050789-5050930

Orphan

Consensus_repeat	Method
GCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044313_7

>merge|NZ_CP044313|7|5050789-5050930|CRISPRCasFinder
GCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACC

>NZ_CP044313|7|7|5050789-5050930|CRISPRCasFinder
GCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACC	TACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCA
GCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044313.1\|WP_000213425.1\|5042613_5043432_-\|bifunctional-pyridoxal-phosphate/fructose-1,6-bisphosphate-phosphatase	unknown	unknown	gnl\|CDD\|182523
NZ_CP044313.1\|WP_000767389.1\|5052433_5052910_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP044313.1\|WP_000723652.1\|5045759_5046812_+\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NZ_CP044313.1\|WP_001356070.1\|5052968_5054258_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP044313.1\|WP_001091569.1\|5050998_5052282_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP044313.1\|WP_000042533.1\|5058526_5060548_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP044313.1\|WP_000951213.1\|5054344_5055385_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP044313.1\|WP_047655224.1\|5040089_5040863_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_CP044313.1\|WP_001295302.1\|5060739_5061648_-\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NZ_CP044313.1\|WP_000604034.1\|5040862_5041552_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_CP044313.1\|WP_000891515.1\|5039774_5039924_+\|multidrug-efflux-pump-accessory-protein-AcrZ	unknown	unknown	gnl\|CDD\|371231
NZ_CP044313.1\|WP_000246761.1\|5056522_5057278_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP044313.1\|WP_000118826.1\|5055381_5056536_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP044313.1\|WP_000891685.1\|5041554_5042613_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NZ_CP044313.1\|WP_001295301.1\|5062044_5063034_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP044313.1\|WP_000679972.1\|5044622_5045576_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP044313.1\|WP_000815449.1\|5043586_5044582_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
NZ_CP044313.1\|WP_050940152.1\|5046887_5048321_+\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP044313.1\|WP_000593945.1\|5048503_5050765_+\|hydratase	unknown	unknown	gnl\|CDD\|183125
NZ_CP044313.1\|WP_000044868.1\|5057270_5057948_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625

Protein	Function_ID	Function_description	E-value
NZ_CP044313.1\|WP_000213425.1\|5042613_5043432_-\|bifunctional-pyridoxal-phosphate/fructose-1,6-bisphosphate-phosphatase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
NZ_CP044313.1\|WP_000767389.1\|5052433_5052910_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	1.08182e-118
NZ_CP044313.1\|WP_000723652.1\|5045759_5046812_+\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NZ_CP044313.1\|WP_001356070.1\|5052968_5054258_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP044313.1\|WP_001091569.1\|5050998_5052282_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP044313.1\|WP_000042533.1\|5058526_5060548_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP044313.1\|WP_000951213.1\|5054344_5055385_+\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP044313.1\|WP_047655224.1\|5040089_5040863_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
NZ_CP044313.1\|WP_001295302.1\|5060739_5061648_-\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.22556e-139
NZ_CP044313.1\|WP_000604034.1\|5040862_5041552_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
NZ_CP044313.1\|WP_000891515.1\|5039774_5039924_+\|multidrug-efflux-pump-accessory-protein-AcrZ	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
NZ_CP044313.1\|WP_000246761.1\|5056522_5057278_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	7.9121e-172
NZ_CP044313.1\|WP_000118826.1\|5055381_5056536_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP044313.1\|WP_000891685.1\|5041554_5042613_+\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NZ_CP044313.1\|WP_001295301.1\|5062044_5063034_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NZ_CP044313.1\|WP_000679972.1\|5044622_5045576_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
NZ_CP044313.1\|WP_000815449.1\|5043586_5044582_+\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
NZ_CP044313.1\|WP_050940152.1\|5046887_5048321_+\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
NZ_CP044313.1\|WP_000593945.1\|5048503_5050765_+\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
NZ_CP044313.1\|WP_000044868.1\|5057270_5057948_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	7.09172e-110

>NZ_CP044313.1|WP_000593945.1|5048503_5050765_+|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYKIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>NZ_CP044313.1|WP_050940152.1|5046887_5048321_+|anion-permease
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLVFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>NZ_CP044313.1|WP_000723652.1|5045759_5046812_+|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>NZ_CP044313.1|WP_000679972.1|5044622_5045576_-|LysR-family-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>NZ_CP044313.1|WP_000815449.1|5043586_5044582_+|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYSIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>NZ_CP044313.1|WP_000213425.1|5042613_5043432_-|bifunctional-pyridoxal-phosphate/fructose-1,6-bisphosphate-phosphatase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>NZ_CP044313.1|WP_000891685.1|5041554_5042613_+|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMAKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELVIKPGLWLYAQIKSVSITA
>NZ_CP044313.1|WP_000604034.1|5040862_5041552_+|molybdate-ABC-transporter-permease-subunit
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>NZ_CP044313.1|WP_047655224.1|5040089_5040863_+|molybdate-ABC-transporter-substrate-binding-protein
MARKWLNLFAGAALSFAVAGNTLADEGKITVFAAASLTNAMQDIATQYKKEKGVDVVSSFGSSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVAPKASEQKDFIIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVVSKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK
>NZ_CP044313.1|WP_000891515.1|5039774_5039924_+|multidrug-efflux-pump-accessory-protein-AcrZ
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH
>NZ_CP044313.1|WP_001091569.1|5050998_5052282_-|putative-acyl-CoA-thioester-hydrolase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>NZ_CP044313.1|WP_000767389.1|5052433_5052910_-|kinase-inhibitor
MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS
>NZ_CP044313.1|WP_001356070.1|5052968_5054258_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTTDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGKRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIIESGEWQQQVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
>NZ_CP044313.1|WP_000951213.1|5054344_5055385_+|biotin-synthase-BioB
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>NZ_CP044313.1|WP_000118826.1|5055381_5056536_+|8-amino-7-oxononanoate-synthase
MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG
>NZ_CP044313.1|WP_000246761.1|5056522_5057278_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYTHVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPKGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE
>NZ_CP044313.1|WP_000044868.1|5057270_5057948_+|ATP-dependent-dethiobiotin-synthetase-BioD
MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGSEKTPEGLRNSDALALQHNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>NZ_CP044313.1|WP_000042533.1|5058526_5060548_+|excinuclease-ABC-subunit-B
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP044313.1|WP_001295302.1|5060739_5061648_-|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG
>NZ_CP044313.1|WP_001295301.1|5062044_5063034_+|GTP-3',8-cyclase-MoaA
MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNGYRLERDVANWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVKVNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELLRRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLFGEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG

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Crispr_ID: NZ_CP044313_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044313_8

5171862-5172010

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP044313_8

>merge|NZ_CP044313|8|5171862-5172010|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAATCGACGGGGTGCGGTAAAACCTTTGCGAACGCGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGC

>NZ_CP044313|8|8|5171862-5172010|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CGACGGGGTGCGGTAAAACCTTTGCGAACGC
GTTCACTGCCGTACAGGCAGCTTAGAAAT	TCACAGGTAACATACTCCACCCGCCCACCAT
GTTCACTGCCGTACAGACAGATAAAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044313.1\|WP_050940226.1\|5179925_5183954_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP044313.1\|WP_000188180.1\|5166454_5168401_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP044313.1\|WP_000746460.1\|5165342_5166458_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP044313.1\|WP_001043579.1\|5175897_5177664_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP044313.1\|WP_000886683.1\|5186164_5187457_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP044313.1\|WP_001298299.1\|5161459_5162155_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP044313.1\|WP_000934041.1\|5169371_5171648_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP044313.1\|WP_000410785.1\|5168473_5168698_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP044313.1\|WP_000599806.1\|5162580_5164239_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP044313.1\|WP_032264362.1\|5174175_5175897_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP044313.1\|WP_050940223.1\|5173429_5174134_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP044313.1\|WP_000491142.1\|5160065_5160965_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP044313.1\|WP_000520781.1\|5169020_5169341_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP044313.1\|WP_000458832.1\|5158269_5159922_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP044313.1\|WP_000537432.1\|5177786_5178752_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP044313.1\|WP_001040187.1\|5172926_5173145_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP044313.1\|WP_001355621.1\|5164235_5165192_-\|VirK/YbjX-family-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP044313.1\|WP_000228473.1\|5179296_5179791_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP044313.1\|WP_000067748.1\|5184730_5186074_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP044313.1\|WP_001295343.1\|5184108_5184720_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638

Protein	Function_ID	Function_description	E-value
NZ_CP044313.1\|WP_050940226.1\|5179925_5183954_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP044313.1\|WP_000188180.1\|5166454_5168401_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP044313.1\|WP_000746460.1\|5165342_5166458_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP044313.1\|WP_001043579.1\|5175897_5177664_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP044313.1\|WP_000886683.1\|5186164_5187457_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP044313.1\|WP_001298299.1\|5161459_5162155_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.04944e-144
NZ_CP044313.1\|WP_000934041.1\|5169371_5171648_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP044313.1\|WP_000410785.1\|5168473_5168698_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP044313.1\|WP_000599806.1\|5162580_5164239_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP044313.1\|WP_032264362.1\|5174175_5175897_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP044313.1\|WP_050940223.1\|5173429_5174134_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	6.95871e-139
NZ_CP044313.1\|WP_000491142.1\|5160065_5160965_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	8.74036e-118
NZ_CP044313.1\|WP_000520781.1\|5169020_5169341_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP044313.1\|WP_000458832.1\|5158269_5159922_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP044313.1\|WP_000537432.1\|5177786_5178752_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP044313.1\|WP_001040187.1\|5172926_5173145_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP044313.1\|WP_001355621.1\|5164235_5165192_-\|VirK/YbjX-family-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	1.27645e-131
NZ_CP044313.1\|WP_000228473.1\|5179296_5179791_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP044313.1\|WP_000067748.1\|5184730_5186074_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP044313.1\|WP_001295343.1\|5184108_5184720_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125

>NZ_CP044313.1|WP_000934041.1|5169371_5171648_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP044313.1|WP_000520781.1|5169020_5169341_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP044313.1|WP_000410785.1|5168473_5168698_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP044313.1|WP_000188180.1|5166454_5168401_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP044313.1|WP_000746460.1|5165342_5166458_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP044313.1|WP_001355621.1|5164235_5165192_-|VirK/YbjX-family-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>NZ_CP044313.1|WP_000599806.1|5162580_5164239_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP044313.1|WP_001298299.1|5161459_5162155_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>NZ_CP044313.1|WP_000491142.1|5160065_5160965_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP044313.1|WP_000458832.1|5158269_5159922_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMANLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>NZ_CP044313.1|WP_001040187.1|5172926_5173145_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP044313.1|WP_050940223.1|5173429_5174134_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHHLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NZ_CP044313.1|WP_032264362.1|5174175_5175897_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRISDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMSEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP044313.1|WP_001043579.1|5175897_5177664_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELALTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEHELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP044313.1|WP_000537432.1|5177786_5178752_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP044313.1|WP_000228473.1|5179296_5179791_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP044313.1|WP_050940226.1|5179925_5183954_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAPEQPAQQPYYAPVPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVETAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQQVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPRQQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP044313.1|WP_001295343.1|5184108_5184720_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP044313.1|WP_000067748.1|5184730_5186074_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDRGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP044313.1|WP_000886683.1|5186164_5187457_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044313_1	1.1\|2129355\|32\|NZ_CP044313\|CRT	2129355-2129386	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246937-246968	3	0.906
NZ_CP044313_6	6.1\|4489252\|48\|NZ_CP044313\|CRISPRCasFinder	4489252-4489299	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4089-4136	3	0.938
NZ_CP044313_6	6.1\|4489252\|48\|NZ_CP044313\|CRISPRCasFinder	4489252-4489299	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4088-4135	3	0.938
NZ_CP044313_6	6.1\|4489252\|48\|NZ_CP044313\|CRISPRCasFinder	4489252-4489299	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4088-4135	3	0.938
NZ_CP044313_6	6.1\|4489252\|48\|NZ_CP044313\|CRISPRCasFinder	4489252-4489299	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4088-4135	3	0.938
NZ_CP044313_1	1.1\|2129355\|32\|NZ_CP044313\|CRT	2129355-2129386	32	NZ_CP015038	Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence	112768-112799	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51276-51307	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45716-45747	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51276-51307	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45716-45747	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51276-51307	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51276-51307	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51276-51307	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29015-29046	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78292-78323	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39594	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51933	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18560-18591	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49240-49271	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81434-81465	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28916-28947	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36182-36213	7	0.781
NZ_CP044313_2	2.2\|2155753\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155753-2155784	32	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32230-32261	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51276-51307	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45716-45747	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51276-51307	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45716-45747	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51276-51307	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51276-51307	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51276-51307	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29015-29046	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78292-78323	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39594	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51933	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18560-18591	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49240-49271	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81434-81465	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28916-28947	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36182-36213	7	0.781
NZ_CP044313_2	2.7\|2155754\|32\|NZ_CP044313\|PILER-CR	2155754-2155785	32	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32230-32261	7	0.781
NZ_CP044313_3	3.1\|2745268\|42\|NZ_CP044313\|CRISPRCasFinder	2745268-2745309	42	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30214-30255	7	0.833
NZ_CP044313_1	1.1\|2129355\|32\|NZ_CP044313\|CRT	2129355-2129386	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1428097-1428128	8	0.75
NZ_CP044313_1	1.3\|2129477\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129477-2129508	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	532343-532374	8	0.75
NZ_CP044313_1	1.8\|2129782\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129782-2129813	32	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	17977-18008	8	0.75
NZ_CP044313_1	1.8\|2129782\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129782-2129813	32	NZ_CP017753	Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence	97497-97528	8	0.75
NZ_CP044313_2	2.3\|2155814\|32\|NZ_CP044313\|CRISPRCasFinder,CRT	2155814-2155845	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1417960-1417991	8	0.75
NZ_CP044313_2	2.8\|2155815\|32\|NZ_CP044313\|PILER-CR	2155815-2155846	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1417960-1417991	8	0.75
NZ_CP044313_3	3.1\|2745268\|42\|NZ_CP044313\|CRISPRCasFinder	2745268-2745309	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24899-24940	8	0.81
NZ_CP044313_1	1.1\|2129355\|32\|NZ_CP044313\|CRT	2129355-2129386	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	141278-141309	9	0.719
NZ_CP044313_1	1.3\|2129477\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129477-2129508	32	NZ_CP040723	Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence	35740-35771	9	0.719
NZ_CP044313_1	1.8\|2129782\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129782-2129813	32	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	405875-405906	9	0.719
NZ_CP044313_3	3.1\|2745268\|42\|NZ_CP044313\|CRISPRCasFinder	2745268-2745309	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24786-24827	9	0.786
NZ_CP044313_1	1.4\|2129538\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129538-2129569	32	NC_007766	Rhizobium etli CFN 42 plasmid p42f, complete sequence	190028-190059	10	0.688
NZ_CP044313_1	1.4\|2129538\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129538-2129569	32	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	191384-191415	10	0.688
NZ_CP044313_1	1.4\|2129538\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129538-2129569	32	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	329763-329794	10	0.688
NZ_CP044313_1	1.4\|2129538\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129538-2129569	32	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	796218-796249	10	0.688
NZ_CP044313_1	1.4\|2129538\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129538-2129569	32	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	177984-178015	10	0.688
NZ_CP044313_1	1.4\|2129538\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129538-2129569	32	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	190516-190547	10	0.688
NZ_CP044313_1	1.7\|2129721\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129721-2129752	32	NZ_CP025810	Sulfitobacter sp. SK025 plasmid unnamed2, complete sequence	89235-89266	10	0.688
NZ_CP044313_1	1.8\|2129782\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129782-2129813	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2248362-2248393	10	0.688
NZ_CP044313_1	1.10\|2129904\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129904-2129935	32	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	244686-244717	10	0.688
NZ_CP044313_1	1.10\|2129904\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129904-2129935	32	GU075905	Prochlorococcus phage P-HM2, complete genome	78536-78567	10	0.688
NZ_CP044313_1	1.7\|2129721\|32\|NZ_CP044313\|CRT,PILER-CR,CRISPRCasFinder	2129721-2129752	32	NC_019364	Sulfitobacter guttiformis plasmid pSD118, complete sequence	38310-38341	11	0.656

1. spacer 1.1|2129355|32|NZ_CP044313|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.906

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
.*******.*********************.*

2. spacer 6.1|4489252|48|NZ_CP044313|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

3. spacer 6.1|4489252|48|NZ_CP044313|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

4. spacer 6.1|4489252|48|NZ_CP044313|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

5. spacer 6.1|4489252|48|NZ_CP044313|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

6. spacer 1.1|2129355|32|NZ_CP044313|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

taagtgat-atccatcatcgcatccagtgcgcc	CRISPR spacer
-ggttgatcgtccttcatcgcagccagtgcgcc	Protospacer
 .. **** .*** ******** **********

7. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

8. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

9. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

10. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

11. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

12. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

13. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

14. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

15. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

16. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

17. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

18. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

19. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

20. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

21. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

22. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

23. spacer 2.2|2155753|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

24. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

25. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

26. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

27. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

28. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

29. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

30. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

31. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

32. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

33. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

34. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

35. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

36. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

37. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

38. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

39. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

40. spacer 2.7|2155754|32|NZ_CP044313|PILER-CR matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

41. spacer 3.1|2745268|42|NZ_CP044313|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.833

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
gcgtaggccagataaggcgtttacgccgcatccggcatttgt	Protospacer
.******.*********.****************.*  .***

42. spacer 1.1|2129355|32|NZ_CP044313|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75

taagtg---atatccatcatcgcatccagtgcgcc	CRISPR spacer
---gtgcgcccctccatcaccgcttccagtgcgcc	Protospacer
   ***    . *******.*** ***********

43. spacer 1.3|2129477|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

ggatctgccagcgcctctgcggggcggtaaac	CRISPR spacer
ggatcggccagcgcatctgcgggaggatgatg	Protospacer
***** ******** ********. *.*.*

44. spacer 1.8|2129782|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
agttggtagcggccctgcgcgtcggtgacgct	Protospacer
   .******* * ****************

45. spacer 1.8|2129782|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
ttgaagaagcgcgactgcgcgtcggtgacgtc	Protospacer
*.. .* ***** *****************

46. spacer 2.3|2155814|32|NZ_CP044313|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tggttcactcacgcaacgtctgagcgcgttga	CRISPR spacer
cggggtaatcacgcaacgtccgaccgcgttgt	Protospacer
.**  .* ************.** *******

47. spacer 2.8|2155815|32|NZ_CP044313|PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tggttcactcacgcaacgtctgagcgcgttga	CRISPR spacer
cggggtaatcacgcaacgtccgaccgcgttgt	Protospacer
.**  .* ************.** *******

48. spacer 3.1|2745268|42|NZ_CP044313|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.81

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaat	Protospacer
 .*******.*******.******************  * .*

49. spacer 1.1|2129355|32|NZ_CP044313|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
ctcatcgcatccatcatcggttccagtgcgcc	Protospacer
.  .* ..***********  ***********

50. spacer 1.3|2129477|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ggatctgccagcgcctctgcggggcggtaaac	CRISPR spacer
gtcgctgccagcgcctcggcgaggcggtctcg	Protospacer
*   ************* ***.******

51. spacer 1.8|2129782|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
ttgaagaagcgcgactgcgcgtcagtgacgtc	Protospacer
*.. .* ***** **********.******

52. spacer 3.1|2745268|42|NZ_CP044313|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.786

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaac	Protospacer
 .*******.*******.******************  * ..

53. spacer 1.4|2129538|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gcgatcgccaaacgcggcgtgataaacgtgct	Protospacer
*. ******** ******* ******.. ..

54. spacer 1.4|2129538|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gcgatcgccaaacgcggcgtgataaacgtgct	Protospacer
*. ******** ******* ******.. ..

55. spacer 1.4|2129538|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gcgatcgccaaacgcggcgtgataaacgtgct	Protospacer
*. ******** ******* ******.. ..

56. spacer 1.4|2129538|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gggatcgccaaacgcggcgtgataaacgtgct	Protospacer
*  ******** ******* ******.. ..

57. spacer 1.4|2129538|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gcgatcgccaaacgcggcgtgataaacgtgct	Protospacer
*. ******** ******* ******.. ..

58. spacer 1.4|2129538|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgccaatcgcggcgagataaatagatg	CRISPR spacer
gcgatcgccaaacgcggcgtgataaacgtgct	Protospacer
*. ******** ******* ******.. ..

59. spacer 1.7|2129721|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025810 (Sulfitobacter sp. SK025 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

gtcatctgacgcaaaatctggtgccgccaaat	CRISPR spacer
tcgatctgacgcaaaaactgctgccgctgctc	Protospacer
 . ************* *** ******..  .

60. spacer 1.8|2129782|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
gggacgtcgcgccactgggcgtcggtgatgtc	Protospacer
  .  ** ********* **********.*

61. spacer 1.10|2129904|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ataattcgcaaatcaatatatattttgtccgt	CRISPR spacer
tattttcggaaatcaatctatattttgcctca	Protospacer
    **** ******** *********.*.

62. spacer 1.10|2129904|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.688

ataattcgcaaatcaatatatattttgtccgt	CRISPR spacer
ccagaagtaaaatcaatatataatttttccgt	Protospacer
 .*.     ************* *** *****

63. spacer 1.7|2129721|32|NZ_CP044313|CRT,PILER-CR,CRISPRCasFinder matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 11, identity: 0.656

gtcatctgacgcaaaatctggtgccgccaaat	CRISPR spacer
tcgatctgacgcaaaaactgttgccgatgctg	Protospacer
 . ************* *** ***** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

25 : 68436

Enterobacteria_phage(51.67%)

terminase,holin,integrase,tail,portal,protease

attL 18399:18415|attR 79134:79150

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151078003.1\|25_565_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.9e-59	68.3
WP_047649236.1\|561_963_+\|tail	tail protein	A0A291AWY2	Escherichia_phage	3.3e-61	82.7
WP_000211140.1\|973_1714_+\|tail	phage tail protein	K7PGT7	Enterobacteria_phage	2.4e-110	85.7
WP_000478930.1\|1770_2160_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	1.2e-39	66.7
WP_072095543.1\|2168_2483_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	2.6e-37	73.1
WP_050939989.1\|2466_5490_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	76.1
WP_050939987.1\|5489_5819_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.1e-46	81.5
WP_001152670.1\|5828_6527_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	2.5e-117	85.3
WP_072095542.1\|6531_7275_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.4e-142	91.9
WP_063113317.1\|7172_7820_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	7.8e-97	80.9
WP_063113316.1\|7880_11294_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	95.9
WP_050939977.1\|11363_11963_+	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	1.3e-109	98.0
WP_072095541.1\|12027_15099_+\|tail	prophage tail fiber N-terminal domain-containing protein	U5N099	Enterobacteria_phage	2.5e-68	82.1
WP_001443470.1\|15098_15680_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.8e-100	93.2
WP_172636179.1\|16470_17706_+	YadA-like family protein	NA	NA	NA	NA
18399:18415	attL	NA	NA	NA	NA
WP_001396447.1\|19160_20180_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	4.4e-86	50.0
WP_000273158.1\|20148_20400_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_151039303.1\|20466_22938_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	3.8e-59	58.8
WP_001090193.1\|23018_23222_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449183.1\|23218_23407_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_000373330.1\|24100_24547_+	hypothetical protein	NA	NA	NA	NA
WP_001345627.1\|24625_25000_-	hypothetical protein	NA	NA	NA	NA
WP_047649242.1\|25011_25164_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	51.1
WP_059222065.1\|25479_25956_-	DNA-binding transcriptional repressor RacR	A0A2D1GNH0	Pseudomonas_phage	2.2e-11	53.4
WP_000712069.1\|26079_26376_+	toxin YdaS	A0A0R6PH31	Moraxella_phage	9.6e-10	44.9
WP_000693884.1\|26398_26824_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_047649206.1\|26895_27966_+	phage replisome organizer	A0A088CD36	Shigella_phage	1.0e-64	66.2
WP_047649207.1\|28011_28806_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	5.9e-54	50.2
WP_047649208.1\|28822_29245_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.4e-64	88.5
WP_040072812.1\|29302_29659_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	3.9e-58	99.2
WP_047649210.1\|29709_29922_+	hypothetical protein	A0A2R2Z310	Escherichia_phage	2.4e-31	87.1
WP_042973577.1\|29954_30173_+	DUF4014 family protein	A0A2R2Z311	Escherichia_phage	1.2e-30	97.2
WP_001229296.1\|30174_30540_+	HNH endonuclease	A0A2R2Z2X9	Escherichia_phage	5.1e-69	100.0
WP_000350274.1\|30647_30881_+	hypothetical protein	A0A2R2Z2X8	Escherichia_phage	2.8e-36	100.0
WP_000220601.1\|31085_31385_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2R2Z2Y1	Escherichia_phage	1.8e-51	100.0
WP_047649213.1\|31390_31648_-	type II toxin-antitoxin system ParD family antitoxin	A0A0N7C055	Escherichia_phage	1.9e-30	86.7
WP_047649247.1\|31783_32056_+	hypothetical protein	I6PCV7	Cronobacter_phage	2.1e-11	48.4
WP_047649215.1\|32057_33107_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.2e-109	54.9
WP_000510632.1\|33119_33479_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-39	67.5
WP_047649217.1\|33475_34141_+	antiterminator	I6PDF8	Cronobacter_phage	5.4e-61	52.4
WP_047649218.1\|34396_35110_+	hypothetical protein	NA	NA	NA	NA
WP_000917767.1\|35283_35481_+	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_151039305.1\|35631_36678_+	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	8.0e-176	86.0
WP_047649221.1\|37445_37835_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	9.9e-47	87.7
WP_047649223.1\|37824_38103_+\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	2.4e-34	83.7
WP_047649225.1\|38104_38650_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	2.9e-92	85.1
WP_040073338.1\|39025_39307_+	hypothetical protein	NA	NA	NA	NA
WP_000417401.1\|39378_39561_+	hypothetical protein	NA	NA	NA	NA
WP_137455798.1\|39717_39900_+	hypothetical protein	NA	NA	NA	NA
WP_000826254.1\|40073_40298_+	hypothetical protein	NA	NA	NA	NA
WP_001373032.1\|40338_40554_+	hypothetical protein	K7PJU3	Enterobacteria_phage	2.8e-19	63.6
WP_047649229.1\|40616_41009_+	hypothetical protein	Q8W634	Enterobacteria_phage	4.1e-48	95.8
WP_157777103.1\|41168_41327_-	hypothetical protein	NA	NA	NA	NA
WP_000421825.1\|41584_42124_+	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.8e-94	100.0
WP_001396463.1\|42132_44232_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	0.0e+00	96.7
WP_001072973.1\|44228_44441_+	hypothetical protein	A5LH28	Enterobacteria_phage	7.1e-31	98.6
WP_077630415.1\|44368_45949_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	3.6e-289	99.8
WP_087514505.1\|45893_47921_+\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	0.0e+00	99.5
WP_001097045.1\|48007_48331_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	8.5e-52	100.0
WP_001283153.1\|48323_48599_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_000677112.1\|48610_49189_+\|tail	phage tail protein	A0A291AWZ0	Escherichia_phage	9.4e-102	99.5
WP_001079419.1\|49185_49587_+\|tail	tail protein	A5LH34	Enterobacteria_phage	1.9e-72	99.2
WP_000211106.1\|49597_50341_+	Ig-like domain-containing protein	K7PGT7	Enterobacteria_phage	1.6e-133	100.0
WP_096970531.1\|50400_50787_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	3.4e-63	96.1
WP_001161009.1\|50795_51125_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_089613568.1\|51096_54168_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	90.7
WP_000447259.1\|54167_54497_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	5.6e-59	98.2
WP_047089946.1\|54506_55205_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.1e-128	95.3
WP_089613593.1\|55210_55954_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.2e-142	92.7
WP_000090862.1\|55890_56493_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.2e-88	84.2
WP_151039306.1\|56553_60033_+	DUF1983 domain-containing protein	A5LH43	Enterobacteria_phage	0.0e+00	90.1
WP_089613414.1\|60091_62677_+\|tail	prophage tail fiber N-terminal domain-containing protein	U5N099	Enterobacteria_phage	5.5e-125	50.1
WP_047089940.1\|62680_63211_+\|tail	tail fiber assembly protein	A0A222YWC2	Escherichia_phage	2.1e-71	75.4
WP_001058323.1\|64217_65336_+	hydrogenase 1 small subunit	NA	NA	NA	NA
WP_000107384.1\|65332_67126_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001186421.1\|67144_67852_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000003671.1\|67848_68436_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
79134:79150	attR	NA	NA	NA	NA

DBSCAN-SWA_2

338037 : 398385

Enterobacteria_phage(41.3%)

terminase,holin,integrase,tail,portal,protease

attL 331454:331468|attR 342183:342197

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
331454:331468	attL	NA	NA	NA	NA
WP_151077956.1\|338037_339168_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	3.4e-103	51.1
WP_000113182.1\|339145_339394_-	excisionase	NA	NA	NA	NA
WP_151077958.1\|339458_341912_-	3'-5' exoribonuclease	V5UQJ3	Shigella_phage	7.3e-103	42.4
WP_050940247.1\|341989_342193_-	DUF1482 family protein	NA	NA	NA	NA
WP_032215066.1\|342189_342378_-	cell division inhibition protein DicB	NA	NA	NA	NA
342183:342197	attR	NA	NA	NA	NA
WP_000373330.1\|343079_343526_+	hypothetical protein	NA	NA	NA	NA
WP_001345627.1\|343604_343979_-	hypothetical protein	NA	NA	NA	NA
WP_151077960.1\|343990_344143_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	51.1
WP_032214969.1\|344424_344706_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_032214970.1\|344709_344898_-	hypothetical protein	NA	NA	NA	NA
WP_032214971.1\|344927_345326_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_032214972.1\|345442_345721_+	helix-turn-helix domain-containing protein	A0A1B5FPK9	Escherichia_phage	3.3e-12	50.0
WP_033559708.1\|345704_346226_+	hypothetical protein	NA	NA	NA	NA
WP_033559707.1\|346206_347172_+	phage O protein family	U5P0A0	Shigella_phage	3.7e-58	61.2
WP_033559706.1\|347178_347925_+	ATP-binding protein	A0A088CBP4	Shigella_phage	4.0e-113	83.8
WP_151077962.1\|347939_348332_+	DUF977 family protein	A0A088CBK9	Shigella_phage	4.5e-31	55.0
WP_074154310.1\|348328_348625_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	4.1e-45	92.7
WP_097418813.1\|348817_349129_+	hypothetical protein	A0A222YY67	Escherichia_phage	1.8e-51	84.5
WP_172636468.1\|349539_350145_+	DUF551 domain-containing protein	A0A1B0V865	Salmonella_phage	9.1e-39	41.7
WP_061351717.1\|350452_350785_-	hypothetical protein	NA	NA	NA	NA
WP_151077964.1\|350966_351239_+	hypothetical protein	A0A077KB22	Edwardsiella_phage	1.0e-05	38.7
WP_151077966.1\|351240_352290_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	7.2e-108	54.6
WP_151077968.1\|352302_352674_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.8e-38	65.5
WP_001421054.1\|352663_353029_+	phage antitermination Q family protein	Q777W5	Enterobacteria_phage	5.6e-52	79.8
WP_001421055.1\|353073_353553_-	hypothetical protein	NA	NA	NA	NA
WP_000917767.1\|353834_354032_+	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_151077970.1\|354182_355229_+	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	1.5e-190	91.9
WP_001294586.1\|355996_356389_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	5.7e-50	88.5
WP_000950571.1\|356378_356657_+\|holin	phage holin family protein	Q9MBZ4	Enterobacteria_phage	1.9e-44	97.8
WP_000836779.1\|356658_357204_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	8.3e-92	85.1
WP_040073338.1\|357579_357861_+	hypothetical protein	NA	NA	NA	NA
WP_000417401.1\|357932_358115_+	hypothetical protein	NA	NA	NA	NA
WP_133158975.1\|358271_358454_+	hypothetical protein	NA	NA	NA	NA
WP_151077972.1\|358881_359097_+	hypothetical protein	K7PJU3	Enterobacteria_phage	3.7e-19	63.6
WP_063103133.1\|359159_359456_+	hypothetical protein	Q8W634	Enterobacteria_phage	1.9e-50	96.9
WP_077881373.1\|359754_360285_+	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.3e-89	96.6
WP_151077974.1\|360302_362402_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	0.0e+00	93.8
WP_047649231.1\|362398_362611_+	hypothetical protein	A5LH28	Enterobacteria_phage	3.3e-28	90.0
WP_151077976.1\|362610_364116_+\|portal	phage portal protein	S5MW34	Escherichia_phage	4.9e-259	88.8
WP_151077978.1\|364060_366124_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A291AWT6	Escherichia_phage	0.0e+00	91.0
WP_057697875.1\|366210_366534_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	3.1e-46	87.9
WP_057697874.1\|366526_366802_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	3.6e-43	93.4
WP_151077980.1\|366813_367392_+\|tail	phage tail protein	A0A291AWZ0	Escherichia_phage	9.8e-91	89.6
WP_040073329.1\|367388_367790_+\|tail	tail protein	A0A291AWY2	Escherichia_phage	1.2e-58	82.0
WP_040073328.1\|367804_368545_+	Ig domain-containing protein	A0A291AWU6	Escherichia_phage	1.1e-110	85.7
WP_137658807.1\|368605_368995_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	5.8e-39	65.2
WP_151077982.1\|369003_369318_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	8.9e-38	73.3
WP_151077985.1\|369301_372325_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	75.7
WP_000402323.1\|372324_372654_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	4.9e-47	82.4
WP_063103116.1\|372663_373362_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	9.6e-117	84.9
WP_040073325.1\|373366_374110_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-141	91.5
WP_047656448.1\|374007_374655_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.2e-97	80.9
WP_151077987.1\|374715_378111_+	DUF1983 domain-containing protein	A0A0K2FI38	Escherichia_phage	0.0e+00	88.7
WP_151077989.1\|378178_378778_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	2.0e-107	97.0
WP_151077991.1\|378842_381428_+\|tail	prophage tail fiber N-terminal domain-containing protein	U5N099	Enterobacteria_phage	1.2e-124	49.9
WP_001164143.1\|381431_381962_+\|tail	tail fiber assembly protein	A0A0F7LBP0	Escherichia_phage	2.1e-71	75.4
WP_001079499.1\|382721_383228_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001056491.1\|383273_383774_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|383859_384039_-	general stress protein	NA	NA	NA	NA
WP_000443065.1\|384419_385226_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_050939457.1\|385225_386419_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000983912.1\|386430_387792_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	1.1e-36	40.2
WP_000763511.1\|387792_389388_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194590.1\|389387_390950_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|391041_391086_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285663.1\|391223_392105_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|392101_392722_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_050939459.1\|392749_394645_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001291217.1\|394855_395731_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_050939464.1\|395770_396361_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559286.1\|396357_397116_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	23.9
WP_000422045.1\|397335_398385_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_3

473371 : 525221

Escherichia_phage(80.36%)

terminase,holin,tRNA,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000628065.1\|473371_474604_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387395.1\|474858_475842_+	zinc transporter ZntB	NA	NA	NA	NA
WP_000123745.1\|476319_477693_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_001157377.1\|477821_478757_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.8e-148	100.0
WP_072017917.1\|478808_480044_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	1.5e-242	100.0
WP_000079604.1\|480045_480261_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_151039308.1\|480360_480549_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	9.4e-27	98.4
WP_021500490.1\|480541_480736_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	9.0e-33	100.0
WP_021529594.1\|480799_481888_-	recombinase RecT	A0A0U2S5Y9	Escherichia_phage	7.7e-206	100.0
WP_042973008.1\|481902_484977_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	0.0e+00	84.5
WP_001349883.1\|485427_485598_-	hypothetical protein	A0A0U2SHB5	Escherichia_phage	6.7e-24	91.1
WP_000560209.1\|485597_485819_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	8.1e-38	98.6
WP_052318200.1\|486239_486392_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.0e-08	55.3
WP_042973012.1\|486773_487238_-	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	8.2e-56	70.2
WP_000171139.1\|487342_487618_+	helix-turn-helix domain-containing protein	A0A0U2S629	Escherichia_phage	1.4e-23	65.9
WP_045174332.1\|487601_488024_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.3e-68	93.6
WP_010358686.1\|488101_488890_+	hypothetical protein	G9L6A8	Escherichia_phage	6.7e-42	65.0
WP_042972910.1\|488896_489643_+	ATP-binding protein	V5UQI5	Shigella_phage	7.3e-115	80.9
WP_042972909.1\|489663_490425_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	3.6e-117	87.7
WP_042972908.1\|490440_490863_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	7.7e-69	97.1
WP_151039310.1\|490859_491114_+	hypothetical protein	A0A0U2RK51	Escherichia_phage	7.2e-38	86.9
WP_042972904.1\|491106_491418_+	hypothetical protein	A0A222YY67	Escherichia_phage	5.3e-51	83.5
WP_000018421.1\|492486_492699_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	8.1e-27	92.9
WP_000687438.1\|492919_493093_+	hypothetical protein	A0A0U2I1S4	Escherichia_phage	1.4e-16	70.4
WP_045174340.1\|493152_493752_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	7.7e-107	92.0
WP_045174342.1\|493751_494042_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	9.6e-47	88.5
WP_045174344.1\|494038_494581_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.1e-74	76.3
WP_001285363.1\|495034_495748_+	hypothetical protein	NA	NA	NA	NA
WP_151039312.1\|497866_498259_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	6.5e-46	80.0
WP_000016408.1\|498248_498524_+\|holin	phage holin family protein	Q9MBZ4	Enterobacteria_phage	3.6e-43	95.6
WP_000014549.1\|498526_498904_+	M15 family metallopeptidase	Q9MBZ3	Enterobacteria_phage	1.3e-64	98.4
WP_000087514.1\|498918_499101_+	hypothetical protein	NA	NA	NA	NA
WP_045174350.1\|499505_500297_+	ParB N-terminal domain-containing protein	R4TG31	Halovirus	5.7e-49	40.7
WP_045174352.1\|500289_501222_+	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	4.6e-82	54.5
WP_170815536.1\|501157_501409_+	hypothetical protein	NA	NA	NA	NA
WP_151039314.1\|501412_502504_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.3e-144	90.8
WP_061354756.1\|502493_503822_+\|terminase	terminase	A0A0U2JTW9	Escherichia_phage	5.4e-262	98.6
WP_001559065.1\|503840_505277_+	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	2.7e-267	96.2
WP_045174362.1\|505221_506055_+	hypothetical protein	A0A0U2I1R8	Escherichia_phage	5.8e-153	97.4
WP_042972883.1\|506035_507358_+	DUF2213 domain-containing protein	A0A0U2QW61	Escherichia_phage	3.2e-190	95.9
WP_042972882.1\|507350_507968_+	hypothetical protein	A0A0U2S600	Escherichia_phage	2.7e-115	97.1
WP_001272364.1\|507982_509011_+	hypothetical protein	A0A0U2QQI2	Escherichia_phage	1.6e-189	99.1
WP_000780862.1\|509068_509539_+	hypothetical protein	A0A0U2SAX6	Escherichia_phage	4.2e-84	99.4
WP_000175376.1\|509538_509979_+	hypothetical protein	A0A0U2S646	Escherichia_phage	1.2e-77	99.3
WP_042972881.1\|510403_511348_+	hypothetical protein	A0A0U2SH76	Escherichia_phage	1.1e-171	99.0
WP_042972877.1\|511347_512685_+	hypothetical protein	A0A0U2KD19	Escherichia_phage	2.5e-246	97.3
WP_042972875.1\|512708_513140_+	hypothetical protein	A0A0U2S616	Escherichia_phage	9.6e-75	99.3
WP_042972873.1\|513136_513754_+	hypothetical protein	A0A0U2S634	Escherichia_phage	3.0e-82	75.0
WP_151039316.1\|513818_515894_+	lytic transglycosylase domain-containing protein	A0A0U2QV45	Escherichia_phage	5.6e-128	43.1
WP_000056327.1\|515897_516566_+	hypothetical protein	A0A0U2JGI7	Escherichia_phage	4.0e-120	97.3
WP_000209263.1\|516562_516829_+	hypothetical protein	A0A0U2JGJ3	Escherichia_phage	2.8e-45	98.9
WP_001271166.1\|516828_517836_+	hypothetical protein	A0A0U2QL72	Escherichia_phage	8.0e-181	91.0
WP_000063620.1\|517835_518549_+\|plate	phage baseplate protein	A0A0U2JTX5	Escherichia_phage	4.1e-123	94.5
WP_001261327.1\|518831_519179_+	hypothetical protein	A0A0U2I1S2	Escherichia_phage	2.2e-61	97.4
WP_000426902.1\|519328_520489_+	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	2.2e-33	30.3
WP_071790993.1\|520529_521756_+\|plate	baseplate J/gp47 family protein	A0A0U2RJZ0	Escherichia_phage	1.3e-225	98.8
WP_001199731.1\|521739_522366_+	hypothetical protein	A0A0U2RK03	Escherichia_phage	2.0e-121	100.0
WP_047613457.1\|522362_523916_+	hypothetical protein	A0A0U2SAV1	Escherichia_phage	9.0e-224	77.7
WP_000902858.1\|523918_524464_+\|tail	tail fiber assembly protein	Q8W612	Enterobacteria_phage	2.7e-74	74.7
WP_001434761.1\|524897_525221_+	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	4.7e-42	78.5

DBSCAN-SWA_4

722818 : 771029

Enterobacteria_phage(40.0%)

terminase,capsid,holin,lysis,transposase,integrase,tail,portal,head

attL 719706:719722|attR 771368:771384

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
719706:719722	attL	NA	NA	NA	NA
WP_050939537.1\|722818_723562_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	8.0e-146	96.4
WP_001152619.1\|723567_724266_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	7.3e-133	99.1
WP_050939578.1\|724265_724595_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.4e-57	96.3
WP_050939581.1\|724591_727141_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	88.9
WP_072095516.1\|727121_727535_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	4.6e-42	86.3
WP_047624210.1\|727561_727990_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.2e-42	66.9
WP_050939599.1\|728005_728755_-\|tail	phage tail protein	S5M7Q5	Escherichia_phage	9.0e-129	93.2
WP_001357870.1\|728762_729158_-\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	2.9e-70	98.5
WP_050939586.1\|729154_729733_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-79	91.7
WP_001204540.1\|729744_730098_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	3.4e-38	65.0
WP_050939589.1\|730090_730465_-	hypothetical protein	NA	NA	NA	NA
WP_000522651.1\|730516_731545_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.7e-115	61.6
WP_050939591.1\|731602_731941_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.5e-22	51.9
WP_151039322.1\|731937_733443_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.8e-99	53.5
WP_135259093.1\|733432_735025_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.3e-184	60.9
WP_000259002.1\|735021_735228_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_063113294.1\|735211_737140_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	7.4e-260	65.3
WP_050940352.1\|737111_737660_-\|terminase	terminase small subunit	K7PJS9	Enterobacteria_phage	1.4e-59	62.8
WP_047089466.1\|738048_738288_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	6.3e-20	76.6
WP_077782553.1\|738499_738682_-	hypothetical protein	K7PHU6	Enterobacteria_phage	4.4e-13	72.4
WP_047672888.1\|738898_739432_-	lysozyme	K7PLY1	Enterobacteria_phage	2.4e-96	93.8
WP_072033262.1\|739545_739806_+	hypothetical protein	NA	NA	NA	NA
WP_047672890.1\|739753_740305_-	YdfR family protein	Q08JA0	Stx2-converting_phage	2.0e-37	66.7
WP_050940350.1\|740309_740525_-\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	8.5e-32	93.0
WP_050940343.1\|741616_742678_-	site-specific DNA-methyltransferase	K7PKK9	Enterobacteria_phage	8.4e-189	91.1
WP_000917767.1\|742828_743026_-	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_050940339.1\|743250_743817_-	ORF6N domain-containing protein	Q8VNP5	Enterobacteria_phage	7.2e-46	63.9
WP_050940359.1\|744098_744482_-	antitermination protein	Q777W5	Enterobacteria_phage	2.9e-59	84.0
WP_047654522.1\|744474_744852_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.8e-37	63.7
WP_050940337.1\|744852_745911_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.7e-88	48.0
WP_050940336.1\|745912_746191_-	hypothetical protein	I6PCV7	Cronobacter_phage	1.3e-11	48.4
WP_050940333.1\|746257_746509_-	hypothetical protein	NA	NA	NA	NA
WP_050940330.1\|746725_746938_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	6.6e-29	95.7
WP_050940328.1\|747463_748051_-	hypothetical protein	NA	NA	NA	NA
WP_001151252.1\|748323_748725_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	6.0e-63	92.5
WP_000054495.1\|748765_749731_-	hypothetical protein	U5P0A0	Shigella_phage	3.4e-56	60.8
WP_000705360.1\|749711_750233_-	hypothetical protein	NA	NA	NA	NA
WP_000921596.1\|750216_750444_-	transcriptional regulator	NA	NA	NA	NA
WP_000381212.1\|750524_750932_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	7.2e-32	51.9
WP_000379591.1\|751100_751253_+	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_170990527.1\|751252_751630_+	hypothetical protein	NA	NA	NA	NA
WP_000159335.1\|751598_751799_-	hypothetical protein	NA	NA	NA	NA
WP_000854559.1\|752301_752490_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001083273.1\|752486_752678_+\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_050940326.1\|752771_755243_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
WP_000005552.1\|755315_755567_+	excisionase family protein	S4TND0	Salmonella_phage	2.2e-15	50.0
WP_050940323.1\|755601_756882_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	8.6e-156	62.1
WP_001360138.1\|756901_757012_-	hypothetical protein	NA	NA	NA	NA
WP_000836059.1\|757069_758089_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
WP_050940321.1\|758100_759315_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	4.1e-46	29.0
WP_000598292.1\|759520_759847_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_000705197.1\|759981_760323_+	DUF1283 family protein	NA	NA	NA	NA
WP_001138584.1\|760357_760918_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_001321287.1\|760920_761631_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_001307224.1\|761738_762044_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_050940319.1\|762242_764669_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.0e-213	49.0
WP_072095568.1\|764729_767153_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.2e-208	48.6
WP_000213028.1\|767163_767781_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
WP_000526492.1\|767782_768637_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000148710.1\|768679_769294_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
WP_000255944.1\|770006_771029_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
771368:771384	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1010489 : 1101304

108

Escherichia_phage(43.06%)

capsid,tRNA,terminase,lysis,holin,transposase,integrase,tail,protease,portal,head

attL 1082330:1082346|attR 1105731:1105747

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000984517.1\|1010489_1011371_-\|protease	protease HtpX	NA	NA	NA	NA
WP_001315679.1\|1011562_1013611_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	6.8e-86	33.5
WP_000431370.1\|1013630_1014329_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_001043882.1\|1014425_1014923_-	L-methionine (R)-S-oxide reductase	NA	NA	NA	NA
WP_001207284.1\|1015052_1016336_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_050939622.1\|1016304_1018938_+	lipid-binding membrane homeostasis protein YebT	NA	NA	NA	NA
WP_001307251.1\|1019017_1020457_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_001295499.1\|1020574_1020811_+	DUF1480 family protein	NA	NA	NA	NA
WP_001296140.1\|1020915_1021107_+	YebW family protein	NA	NA	NA	NA
WP_000812724.1\|1021107_1021764_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	3.1e-56	50.2
WP_000976492.1\|1022159_1022501_-	YebY family protein	NA	NA	NA	NA
WP_000879280.1\|1022513_1023386_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000204699.1\|1023389_1023764_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000916763.1\|1023902_1024133_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-14	61.8
WP_000011658.1\|1024234_1024891_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_050939619.1\|1024914_1025577_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	1.2e-07	41.6
WP_000936936.1\|1025573_1027634_-	oligopeptidase B	NA	NA	NA	NA
WP_000024745.1\|1027842_1028502_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_001295500.1\|1028828_1029185_-	protein YebF	NA	NA	NA	NA
WP_000257738.1\|1029251_1029542_-	DNA damage-inducible protein YebG	NA	NA	NA	NA
WP_000173474.1\|1029675_1030854_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_000800512.1\|1030909_1031551_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_001069467.1\|1031587_1033399_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_000301727.1\|1033633_1035109_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	4.4e-79	37.5
WP_001056694.1\|1035446_1036316_+	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
WP_000091176.1\|1036443_1037886_+	pyruvate kinase	NA	NA	NA	NA
WP_000448381.1\|1038016_1038988_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_001184045.1\|1039107_1040430_-	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	40.9
WP_050939628.1\|1040445_1041378_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_000202996.1\|1041456_1042212_+	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	1.3e-18	28.3
WP_000571479.1\|1042208_1042994_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_000568519.1\|1043140_1044151_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.6e-09	25.5
WP_000580323.1\|1044159_1044771_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_001386853.1\|1044909_1044975_-	hypothetical protein	NA	NA	NA	NA
WP_001024930.1\|1045045_1045648_+	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_001295503.1\|1045649_1046171_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_000907248.1\|1046205_1046946_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_077249130.1\|1046974_1047427_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_001258662.1\|1047419_1049192_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_000891620.1\|1049501_1050068_+	hydrolase	NA	NA	NA	NA
WP_001217534.1\|1050385_1050634_+	DinI-like family protein	S5MQI1	Escherichia_phage	8.0e-34	87.8
WP_050939615.1\|1050903_1051575_-	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	1.1e-106	83.9
WP_050939614.1\|1051643_1052912_-\|tail	prophage tail fiber N-terminal domain-containing protein	S5MDN9	Escherichia_phage	1.9e-54	98.2
WP_000078855.1\|1053056_1053197_-	Hok/Gef family protein	S5M7Q0	Escherichia_phage	8.5e-17	93.5
WP_123130871.1\|1057323_1057956_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	7.9e-102	91.9
WP_050939605.1\|1057901_1058645_-\|tail	phage tail protein	S5MQI8	Escherichia_phage	1.2e-149	98.0
WP_001499019.1\|1058655_1059354_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	2.1e-132	98.7
WP_000847279.1\|1059353_1059683_-\|tail	phage tail protein	S5MW28	Escherichia_phage	5.6e-59	100.0
WP_050939603.1\|1059679_1062253_-\|tail	phage tail tape measure protein	S5MBY3	Escherichia_phage	0.0e+00	85.3
WP_000533402.1\|1062233_1062647_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000479116.1\|1062673_1063105_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.7e-42	68.8
WP_000235046.1\|1063118_1063871_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	1.0e-132	98.0
WP_000683079.1\|1063878_1064274_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_024213759.1\|1064270_1064846_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	9.8e-51	58.7
WP_001204554.1\|1064861_1065215_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-41	70.1
WP_000201501.1\|1065207_1065591_-	DNA-packaging protein FI	NA	NA	NA	NA
WP_000522591.1\|1065642_1066671_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.6e-112	61.0
WP_024213760.1\|1066728_1067076_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.5e-22	57.0
WP_032285156.1\|1067112_1068618_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.5e-98	53.0
WP_032285154.1\|1068607_1070200_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	3.8e-185	61.3
WP_000259002.1\|1070196_1070403_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_032285152.1\|1070386_1072315_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.5e-260	65.9
WP_000235436.1\|1072286_1072796_-\|terminase	terminase small subunit	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_001307652.1\|1073190_1073385_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000738423.1\|1073745_1074039_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_077628513.1\|1074129_1074312_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.5e-16	96.7
WP_032285289.1\|1074528_1075026_-	lysozyme RrrD	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
WP_032285291.1\|1075025_1075241_-\|holin	class II holin family protein	Q9ZWW2	Enterobacteria_phage	2.0e-33	98.6
WP_001290230.1\|1075318_1075564_-	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_032285293.1\|1075604_1075784_-	DUF1378 family protein	A0A088CBQ0	Shigella_phage	7.8e-23	91.5
WP_050940079.1\|1075920_1077885_-	SASA family carbohydrate esterase	Q6H9W1	Enterobacteria_phage	3.8e-296	78.6
WP_000752026.1\|1078389_1078659_-	Shiga toxin Stx1a subunit B	Q7AYI7	Enterobacteria_phage	1.6e-43	100.0
WP_050940076.1\|1078668_1079616_-	Shiga toxin Stx1 subunit A	Q777W4	Enterobacteria_phage	9.2e-171	99.7
WP_001204859.1\|1080122_1080557_-	antitermination protein	A0A0P0ZGJ3	Escherichia_phage	4.8e-82	100.0
WP_000144764.1\|1080549_1080744_-	protein ninH	G9L694	Escherichia_phage	1.9e-30	100.0
WP_001108006.1\|1080740_1081346_-	recombination protein NinG	Q8VNP2	Enterobacteria_phage	1.9e-97	100.0
WP_050940073.1\|1081345_1082068_-	phage antirepressor KilAC domain-containing protein	A0A0P0ZCB2	Stx2-converting_phage	3.3e-128	99.2
WP_050940070.1\|1082142_1082877_-	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	1.8e-121	99.2
1082330:1082346	attL	NA	NA	NA	NA
WP_001254256.1\|1083151_1083334_-	NinE family protein	A0A0N7C1X3	Escherichia_phage	5.7e-29	100.0
WP_050940068.1\|1083330_1083858_-	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	3.6e-100	99.4
WP_000736913.1\|1083854_1084295_-	recombination protein NinB	M1FPM8	Enterobacteria_phage	1.2e-80	100.0
WP_050940065.1\|1084569_1084860_-	protein ren	O48423	Enterobacteria_phage	1.6e-46	99.0
WP_050940062.1\|1084856_1085558_-	Replication protein P	K7P6G2	Enterobacteria_phage	6.4e-129	99.6
WP_135259131.1\|1085554_1086493_-	replication protein	C1JJ53	Enterobacteria_phage	3.7e-172	99.7
WP_000442609.1\|1086525_1086822_-	hypothetical protein	G9L678	Escherichia_phage	2.2e-46	94.9
WP_000067727.1\|1086963_1087179_-	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_096002361.1\|1087252_1087948_+	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	3.3e-133	99.6
WP_001062368.1\|1087987_1088545_+	hypothetical protein	NA	NA	NA	NA
WP_000968517.1\|1088541_1089294_+	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_000438342.1\|1089570_1089753_+	hypothetical protein	A0A0N7C057	Escherichia_phage	1.1e-27	98.3
WP_000088203.1\|1089730_1090003_+	hypothetical protein	A0A0N7C217	Escherichia_phage	5.7e-41	100.0
WP_050940058.1\|1090061_1090511_+	hypothetical protein	I6RSN8	Salmonella_phage	1.9e-70	88.6
WP_000776961.1\|1090699_1091011_+	superinfection exclusion protein	A0A0N7BTN9	Escherichia_phage	4.6e-55	98.1
WP_001549082.1\|1091086_1091257_+	hypothetical protein	A0A192Y6R1	Salmonella_phage	2.5e-18	82.1
WP_001549081.1\|1091253_1091418_+	hypothetical protein	NA	NA	NA	NA
WP_000604110.1\|1091502_1091811_+	hypothetical protein	K7PJM4	Enterobacteria_phage	3.3e-53	99.0
WP_000065845.1\|1091807_1092710_+	recombinase RecT	K7PKG9	Enterobacteria_phage	3.3e-146	88.1
WP_050940056.1\|1092693_1093176_+	siphovirus Gp157 family protein	K7P6T5	Enterobacteria_phage	9.3e-79	97.5
WP_000753560.1\|1093187_1093502_+	hypothetical protein	K7PLT4	Enterobacteria_phage	2.7e-50	99.0
WP_001323403.1\|1093661_1094441_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_000255944.1\|1094440_1095463_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001214456.1\|1095755_1095920_+	DUF2737 family protein	A0A2I6PID4	Escherichia_phage	1.1e-23	100.0
WP_050939314.1\|1095916_1096591_+	hypothetical protein	K7P729	Enterobacteria_phage	1.8e-51	52.7
WP_072018156.1\|1096587_1096821_+	Lar family restriction alleviation protein	NA	NA	NA	NA
WP_050939321.1\|1096807_1097512_+	ead/Ea22-like family protein	A0A0N7BYR8	Escherichia_phage	1.1e-32	61.2
WP_032285306.1\|1097514_1098006_+	hypothetical protein	G9L661	Escherichia_phage	9.8e-84	93.3
WP_151039328.1\|1099614_1100523_+\|integrase	tyrosine-type recombinase/integrase	Q859D2	Escherichia_coli_phage	2.3e-150	95.5
WP_172636180.1\|1100488_1101304_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.4e-72	99.2
1105731:1105747	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1109152 : 1175774

Enterobacteria_phage(73.47%)

terminase,tRNA,capsid,holin,plate,integrase,tail,portal,head

attL 1140062:1140121|attR 1176717:1176840

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001025342.1\|1109152_1110886_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001297434.1\|1111062_1111551_+	lysozyme inhibitor LprI family protein	NA	NA	NA	NA
WP_001259583.1\|1111670_1112063_-	flagellar protein FlhE	NA	NA	NA	NA
WP_000066983.1\|1112062_1114141_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001278954.1\|1114133_1115282_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000983609.1\|1115483_1116128_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_000763867.1\|1116138_1116528_-	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000036378.1\|1116542_1117592_-	protein-glutamate methylesterase/protein glutamine deamidase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000204335.1\|1117594_1118455_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_000483220.1\|1118473_1120075_-	methyl-accepting chemotaxis protein IV	A0A2H4J162	uncultured_Caudovirales_phage	8.3e-15	29.7
WP_001297437.1\|1120120_1121782_-	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	40.3
WP_000147302.1\|1121926_1122430_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_072095501.1\|1122450_1124415_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_000795630.1\|1124419_1125346_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_000906336.1\|1125342_1126230_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_001291603.1\|1126356_1126935_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_001295647.1\|1126937_1127288_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_000122426.1\|1128067_1128496_+	universal stress protein UspC	NA	NA	NA	NA
WP_001295646.1\|1128502_1129927_-	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_021563705.1\|1129901_1130702_-	trehalose-phosphatase	NA	NA	NA	NA
WP_000100203.1\|1130868_1131855_-	arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_050939309.1\|1131869_1133384_-	arabinose ABC transporter ATP binding protein AraG	A0A2H4PQG7	Staphylococcus_phage	4.3e-13	27.1
WP_000548675.1\|1133453_1134443_-	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_000179469.1\|1135239_1135743_+	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000082127.1\|1135821_1136073_-	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_010723106.1\|1136187_1136274_-	stress response protein AzuC	NA	NA	NA	NA
WP_001237869.1\|1136536_1136860_+	lipoprotein, function unknown	NA	NA	NA	NA
WP_000917208.1\|1137030_1137528_+	non-heme ferritin	NA	NA	NA	NA
WP_000377223.1\|1137565_1137805_-	YecH family protein	NA	NA	NA	NA
WP_000797573.1\|1137996_1139208_+	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000847902.1\|1139269_1139935_-	UPF0149 family protein YecA	NA	NA	NA	NA
1140062:1140121	attL	NA	NA	NA	NA
WP_001300279.1\|1140291_1141293_-\|integrase	tyrosine-type recombinase/integrase	Q94N03	Haemophilus_virus	4.2e-105	58.5
WP_000865207.1\|1141298_1141646_-	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_000290349.1\|1141675_1142326_-	hypothetical protein	NA	NA	NA	NA
WP_000786769.1\|1142341_1142746_-	transcriptional regulator	Q6QID2	Burkholderia_phage	1.6e-23	53.8
WP_001673482.1\|1142835_1142973_-	hypothetical protein	NA	NA	NA	NA
WP_000014504.1\|1143044_1143248_+	DNA-binding protein	P79674	Haemophilus_phage	3.1e-07	45.2
WP_000739030.1\|1143269_1143620_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	1.5e-49	81.9
WP_000159456.1\|1143630_1143909_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.1e-34	79.3
WP_000357028.1\|1143920_1144163_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	3.4e-37	97.5
WP_000021659.1\|1144159_1144273_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	4.0e-09	91.9
WP_000543031.1\|1144366_1144777_+	hypothetical protein	NA	NA	NA	NA
WP_000985157.1\|1144800_1145004_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.5e-25	83.6
WP_000153700.1\|1145000_1145267_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	2.0e-30	75.9
WP_000104296.1\|1145263_1145563_+	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	2.8e-41	89.9
WP_001372767.1\|1145574_1146192_+	ash family protein	S5MQL6	Escherichia_phage	2.1e-06	37.8
WP_032083492.1\|1146188_1146578_+	hypothetical protein	NA	NA	NA	NA
WP_151039330.1\|1146574_1149415_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	88.9
WP_000686536.1\|1149491_1150451_+	plasmid segregation protein ParM	A0A0A7NPX4	Enterobacteria_phage	3.8e-180	99.4
WP_000211291.1\|1150455_1150767_+	plasmid partitioning/stability family protein	A0A0A7NPT5	Enterobacteria_phage	7.7e-50	97.1
WP_000759755.1\|1150827_1151352_+	hypothetical protein	NA	NA	NA	NA
WP_021520797.1\|1151348_1151939_+	ead/Ea22-like family protein	Q5G8U8	Enterobacteria_phage	2.3e-31	54.4
WP_000087812.1\|1152429_1153476_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
WP_000613782.1\|1153475_1155227_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.8
WP_021520799.1\|1155381_1156218_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	3.0e-149	98.9
WP_001055104.1\|1156241_1157294_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.3e-194	97.7
WP_021520800.1\|1157339_1158140_+\|terminase	phage small terminase subunit	A0A0A7NPX9	Enterobacteria_phage	2.8e-128	90.2
WP_000063103.1\|1158241_1158736_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.2e-89	99.4
WP_021520801.1\|1158735_1158936_+\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	5.1e-31	98.5
WP_000104350.1\|1158938_1159262_+\|holin	phage holin family protein	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_000072327.1\|1159258_1159651_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
WP_000780560.1\|1159647_1160055_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	4.2e-64	95.6
WP_000920594.1\|1160192_1160660_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.6e-86	100.0
WP_000356358.1\|1160652_1161288_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	3.1e-114	99.5
WP_001705833.1\|1161299_1161866_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	2.3e-100	98.9
WP_170997562.1\|1161883_1162213_+	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	1.9e-54	99.1
WP_021520802.1\|1162216_1163113_+\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	3.0e-155	98.0
WP_078331657.1\|1163105_1163636_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	7.3e-93	98.8
WP_112065116.1\|1163638_1165789_+\|tail	tail fiber protein	Q7Y4D4	Escherichia_virus	3.7e-300	82.5
WP_021520805.1\|1165792_1166320_+\|tail	tail fiber assembly protein	A0A222YWC2	Escherichia_phage	2.0e-90	96.0
WP_021520804.1\|1166348_1166882_-\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	5.5e-96	98.9
WP_000905061.1\|1167660_1168260_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.8e-98	98.9
WP_000979945.1\|1168288_1168777_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_151039334.1\|1168789_1171597_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	93.0
WP_000333503.1\|1171583_1171739_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000651572.1\|1171747_1172122_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.0e-37	73.2
WP_096936375.1\|1172177_1172690_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.2e-92	99.4
WP_151039336.1\|1172689_1173874_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7NV69	Enterobacteria_phage	1.3e-219	96.4
WP_021520808.1\|1174031_1175141_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	7.9e-198	95.9
WP_000488107.1\|1175183_1175444_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078920.1\|1175633_1175774_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	7.0e-19	100.0
1176717:1176840	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1406936 : 1414568

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292774.1\|1406936_1408073_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
WP_050938814.1\|1408069_1410070_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.8
WP_001295429.1\|1410194_1410656_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001295430.1\|1410696_1411167_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|1411213_1411933_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|1411929_1413615_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240401.1\|1413836_1414568_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5

DBSCAN-SWA_8

1648722 : 1734739

Enterobacteria_phage(16.67%)

integrase,transposase

attL 1662624:1662683|attR 1733631:1735585

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085947598.1\|1648722_1649884_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.0e-51	40.6
WP_001195819.1\|1650752_1651238_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_050940191.1\|1651440_1653585_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_000531954.1\|1653584_1654895_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_000030901.1\|1655074_1655359_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_001296861.1\|1655730_1657071_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_135259174.1\|1657435_1658494_+	hypothetical protein	NA	NA	NA	NA
WP_000776768.1\|1658675_1659431_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_000368131.1\|1659724_1660657_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.2e-167	100.0
WP_001131474.1\|1660982_1662173_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	5.8e-130	57.3
1662624:1662683	attL	NA	NA	NA	NA
WP_000255944.1\|1662709_1663732_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001323403.1\|1663731_1664511_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_151039344.1\|1664611_1665773_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.4e-51	40.6
WP_000901352.1\|1666130_1667147_+	hypothetical protein	NA	NA	NA	NA
WP_050940277.1\|1667146_1668175_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	5.0e-13	26.0
WP_001066242.1\|1672947_1673448_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_050939755.1\|1674077_1674545_+	hypothetical protein	NA	NA	NA	NA
WP_000088748.1\|1675658_1676480_-	5-deoxy-glucuronate isomerase	NA	NA	NA	NA
WP_000116047.1\|1676489_1677380_-	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_000414795.1\|1677391_1679296_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_000665944.1\|1679308_1680442_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000192889.1\|1680450_1681479_-	ABC transporter permease	NA	NA	NA	NA
WP_000082085.1\|1681490_1683038_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.6e-10	25.7
WP_050939752.1\|1683089_1684019_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_050939749.1\|1684050_1685037_-	inositol 2-dehydrogenase	NA	NA	NA	NA
WP_063113454.1\|1685321_1687247_-	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	E5EQ70	Micromonas_sp._RCC1109_virus	4.8e-25	23.0
WP_050939744.1\|1687258_1688764_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_050939742.1\|1689054_1689918_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_157904463.1\|1690743_1691094_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_050939729.1\|1692410_1693721_-	yersiniabactin biosynthesis salicylate synthase YbtS	NA	NA	NA	NA
WP_050939726.1\|1693748_1695029_-	yersiniabactin-associated zinc MFS transporter YbtX	NA	NA	NA	NA
WP_050939722.1\|1695021_1696824_-	yersiniabactin ABC transporter ATP-binding/permease protein YbtQ	W8CYL7	Bacillus_phage	1.8e-21	26.5
WP_050939719.1\|1696810_1698523_-	yersiniabactin ABC transporter ATP-binding/permease protein YbtP	W8CYL7	Bacillus_phage	4.0e-31	26.8
WP_050939716.1\|1698779_1699739_+	yersiniabactin transcriptional regulator YbtA	NA	NA	NA	NA
WP_050939713.1\|1699929_1706037_+	yersiniabactin non-ribosomal peptide synthetase HMWP2	A0A2K9L3I8	Tupanvirus	5.2e-33	27.3
WP_050939708.1\|1706124_1715616_+	yersiniabactin polyketide synthase HMWP1	D0R7J2	Paenibacillus_phage	1.6e-49	36.8
WP_050939705.1\|1715612_1716713_+	yersiniabactin biosynthesis oxidoreductase YbtU	NA	NA	NA	NA
WP_000194282.1\|1716709_1717513_+	yersiniabactin biosynthesis thioesterase YbtT	NA	NA	NA	NA
WP_001088826.1\|1717516_1719094_+	yersiniabactin biosynthesis salycil-AMP ligase YbtE	NA	NA	NA	NA
WP_050939701.1\|1719224_1721246_+	siderophore yersiniabactin receptor FyuA	NA	NA	NA	NA
WP_050939697.1\|1722104_1724075_+	TonB-dependent receptor	NA	NA	NA	NA
WP_050939694.1\|1724093_1724891_+	DUF4198 domain-containing protein	NA	NA	NA	NA
WP_050939690.1\|1725066_1725720_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_050939687.1\|1726331_1726970_-	ParB N-terminal domain-containing protein	A0A0F7L444	uncultured_marine_virus	3.6e-54	51.6
WP_050939684.1\|1726954_1728184_-	phosphoadenosine phosphosulfate reductase	A0A220GKF8	Streptococcus_phage	1.3e-60	34.3
WP_172636182.1\|1729954_1730305_+	reverse transcriptase	A0A0U4J920	Pseudomonas_phage	3.8e-05	34.3
WP_050939675.1\|1731327_1731621_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	6.5e-43	89.7
WP_050939672.1\|1732067_1732337_-	hypothetical protein	NA	NA	NA	NA
WP_000255944.1\|1733716_1734739_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
1733631:1735585	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2017258 : 2028707

Enterobacteria_phage(72.73%)

integrase

attL 2013015:2013028|attR 2020363:2020376

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2013015:2013028	attL	NA	NA	NA	NA
WP_000162574.1\|2017258_2017741_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_000124726.1\|2018502_2019711_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	6.6e-105	50.1
WP_001183325.1\|2019714_2021673_+	NACHT domain-containing protein	X5JAK5	Clostridium_phage	3.9e-67	36.3
2020363:2020376	attR	NA	NA	NA	NA
WP_000446132.1\|2021890_2022463_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.2e-95	97.3
WP_000638635.1\|2022536_2023037_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_001283014.1\|2023033_2023768_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	6.1e-130	98.4
WP_001149160.1\|2024320_2024587_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_123001748.1\|2024586_2025009_+	ash family protein	Q7M2A7	Enterobacteria_phage	4.9e-23	89.8
WP_001365039.1\|2024977_2025175_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.0e-28	100.0
WP_052897488.1\|2025167_2025455_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	9.5e-47	95.8
WP_000459301.1\|2025447_2025903_+	hypothetical protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
WP_000856729.1\|2026038_2026359_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_097462978.1\|2026373_2028707_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	98.7

DBSCAN-SWA_10

2108778 : 2121961

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272924.1\|2108778_2111340_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
WP_001141340.1\|2111445_2112102_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	8.0e-49	46.3
WP_001297141.1\|2112152_2112920_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
WP_000847985.1\|2113115_2114024_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590397.1\|2114020_2115283_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_001278994.1\|2115279_2115918_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_001136918.1\|2115922_2116699_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_000104429.1\|2116787_2118152_+	GntP family transporter	NA	NA	NA	NA
WP_000081550.1\|2118245_2119238_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
WP_001272592.1\|2119300_2120440_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
WP_000254708.1\|2120579_2121206_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
WP_001295182.1\|2121199_2121961_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0

DBSCAN-SWA_11

2450255 : 2555170

104

Vibrio_phage(39.22%)

transposase,plate,integrase,tail,protease,head

attL 2450028:2450044|attR 2503368:2503384

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2450028:2450044	attL	NA	NA	NA	NA
WP_000534924.1\|2450255_2451314_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_040089466.1\|2451355_2453011_-	TraI domain-containing protein	NA	NA	NA	NA
WP_061317333.1\|2453003_2454521_-	UvrD-helicase domain-containing protein	A0A126DN25	Acinetobacter_phage	1.3e-44	30.8
WP_040089481.1\|2455127_2455772_-	hypothetical protein	NA	NA	NA	NA
WP_151039364.1\|2455792_2456107_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_040089482.1\|2456141_2456780_-	ParB N-terminal domain-containing protein	A0A0F7L444	uncultured_marine_virus	1.0e-56	53.0
WP_040089483.1\|2456764_2457997_-	phosphoadenosine phosphosulfate reductase	A0A220GKF8	Streptococcus_phage	1.9e-59	33.5
WP_170989474.1\|2458137_2458782_-	hypothetical protein	NA	NA	NA	NA
WP_122992006.1\|2460474_2462220_-	NERD domain-containing protein	NA	NA	NA	NA
WP_072278218.1\|2462397_2462946_-	Ail/Lom family outer membrane beta-barrel protein	Q9LA63	Enterobacterial_phage	8.9e-17	32.9
WP_040089554.1\|2464986_2465244_-	hypothetical protein	NA	NA	NA	NA
WP_151039366.1\|2465240_2474219_-	hemagglutinin repeat-containing protein	A0A0R6PJK4	Moraxella_phage	8.4e-56	39.2
WP_001243916.1\|2474234_2474762_-	toxin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_061341861.1\|2474771_2476424_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	A0A0R6PI85	Moraxella_phage	1.7e-39	28.2
WP_032152656.1\|2477100_2477325_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_021580257.1\|2477333_2477567_-	hypothetical protein	NA	NA	NA	NA
WP_050940555.1\|2477653_2478277_-	hypothetical protein	NA	NA	NA	NA
WP_157839846.1\|2478888_2479032_+	hypothetical protein	NA	NA	NA	NA
WP_040089161.1\|2479151_2479664_+	ProQ/FinO family protein	Q2A0A1	Sodalis_phage	4.1e-08	39.7
WP_021580263.1\|2481662_2482274_+	YfdX family protein	NA	NA	NA	NA
WP_151039456.1\|2482479_2484090_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_000255944.1\|2484170_2485193_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001323403.1\|2485192_2485972_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_040089475.1\|2486433_2487225_+	hypothetical protein	NA	NA	NA	NA
WP_077820601.1\|2487577_2487811_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_050940575.1\|2487896_2488469_+	hypothetical protein	NA	NA	NA	NA
WP_050940578.1\|2489958_2490978_+	transcriptional regulator	NA	NA	NA	NA
WP_050940580.1\|2491087_2491960_+	GTPase family protein	NA	NA	NA	NA
WP_151039368.1\|2492332_2495182_+	autotransporter adhesin Ag43	NA	NA	NA	NA
WP_050940602.1\|2495302_2497819_+	hypothetical protein	NA	NA	NA	NA
WP_000581504.1\|2497894_2498350_+	hypothetical protein	NA	NA	NA	NA
WP_001119729.1\|2498428_2498662_+	DUF905 family protein	NA	NA	NA	NA
WP_001234620.1\|2498761_2499580_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.0e-44	38.2
WP_050938918.1\|2499634_2500120_+	antirestriction protein	A0A2D0W9W4	Bordetella_phage	3.1e-13	34.3
WP_001186727.1\|2500135_2500612_+	RadC family protein	NA	NA	NA	NA
WP_050938919.1\|2500674_2500896_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	3.2e-10	45.8
WP_001339471.1\|2501058_2501427_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_050938921.1\|2501516_2501894_+	toxin	NA	NA	NA	NA
WP_000761721.1\|2501890_2502379_+	hypothetical protein	NA	NA	NA	NA
WP_000839281.1\|2502390_2502588_+	DUF957 domain-containing protein	NA	NA	NA	NA
WP_001290246.1\|2502684_2503257_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_000942795.1\|2503537_2504074_-	GspM family type II secretion system protein YghD	NA	NA	NA	NA
2503368:2503384	attR	NA	NA	NA	NA
WP_000094974.1\|2504075_2505254_-	type II secretion system protein GspL	NA	NA	NA	NA
WP_000633238.1\|2505250_2506228_-	type II secretion system minor pseudopilin GspK	NA	NA	NA	NA
WP_064760790.1\|2506230_2506830_-	type II secretion system minor pseudopilin GspJ	NA	NA	NA	NA
WP_000820125.1\|2506826_2507198_-	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA
WP_001115139.1\|2507194_2507758_-	type II secretion system minor pseudopilin GspH	NA	NA	NA	NA
WP_001087296.1\|2507761_2508217_-	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_001173448.1\|2508233_2509457_-	type II secretion system inner membrane protein GspF	NA	NA	NA	NA
WP_040100330.1\|2509966_2510470_-	hypothetical protein	NA	NA	NA	NA
WP_040100331.1\|2510588_2511293_-	hypothetical protein	A0A0C4UQZ7	Shigella_phage	2.0e-130	97.0
WP_001372435.1\|2511243_2511429_-	Com family DNA-binding transcriptional regulator	A0A0C4UQS3	Shigella_phage	7.5e-21	72.6
WP_040100333.1\|2511548_2512115_-	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	3.9e-84	83.5
WP_052924219.1\|2514706_2515237_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.6e-68	70.5
WP_077793277.1\|2515251_2515770_-	hypothetical protein	Q1MVL8	Enterobacteria_phage	5.2e-35	64.0
WP_040100337.1\|2516250_2516835_-	DUF2313 domain-containing protein	M1NVS6	Vibrio_phage	2.5e-49	49.2
WP_040100339.1\|2516819_2517896_-\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	7.9e-94	51.8
WP_040100341.1\|2517885_2518338_-	phage GP46 family protein	A0A2I7S9F0	Vibrio_phage	3.7e-21	41.4
WP_000523890.1\|2518334_2518871_-\|plate	phage baseplate assembly protein	A0A2I7S9F6	Vibrio_phage	4.1e-27	40.2
WP_052924218.1\|2518861_2519932_-\|tail	phage tail protein	M4M9L5	Vibrio_phage	2.0e-89	47.2
WP_052924217.1\|2519931_2521206_-	DNA circularization N-terminal domain-containing protein	A0A2I7S9E8	Vibrio_phage	3.0e-68	36.7
WP_052924216.1\|2521205_2522999_-\|tail	phage tail protein	M4MHE6	Vibrio_phage	1.5e-121	51.5
WP_001127483.1\|2522985_2523123_-	hypothetical protein	NA	NA	NA	NA
WP_052924215.1\|2523085_2523481_-\|tail	phage tail assembly protein	M4MB64	Vibrio_phage	2.1e-20	48.3
WP_001062748.1\|2523482_2523839_-\|tail	phage tail tube protein	A0A2P1A4D6	Alteromonadaceae_phage	2.9e-13	35.5
WP_040100351.1\|2523848_2525324_-\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	2.5e-154	55.9
WP_052924214.1\|2525323_2525509_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_052924213.1\|2525489_2526101_-	hypothetical protein	M1PJ94	Vibrio_phage	7.3e-36	43.8
WP_000513058.1\|2526097_2526640_-	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	1.6e-58	63.1
WP_000540583.1\|2526639_2527077_-	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	3.7e-34	49.7
WP_001290368.1\|2527076_2527388_-	hypothetical protein	NA	NA	NA	NA
WP_052924212.1\|2527466_2528369_-\|head	Mu-like prophage major head subunit gpT family protein	M4MB71	Vibrio_phage	1.1e-99	57.2
WP_052924211.1\|2528368_2529331_-	peptidase	M1Q578	Vibrio_phage	1.6e-77	46.6
WP_052924210.1\|2529544_2530309_-	hypothetical protein	M4M9M5	Vibrio_phage	4.0e-92	59.7
WP_052924209.1\|2530301_2531873_-	DUF935 domain-containing protein	A0A2I7S9K0	Vibrio_phage	6.6e-158	57.9
WP_112793722.1\|2531869_2533396_-	hypothetical protein	M1NVQ0	Vibrio_phage	2.1e-196	68.3
WP_052924208.1\|2533401_2533983_-	DUF3486 family protein	M1PJ86	Vibrio_phage	1.7e-50	56.0
WP_001080359.1\|2533972_2534131_-	hypothetical protein	NA	NA	NA	NA
WP_040100367.1\|2534120_2534420_-	hypothetical protein	NA	NA	NA	NA
WP_024168521.1\|2534422_2534710_-	hypothetical protein	A0A0C4UR00	Shigella_phage	1.6e-25	60.6
WP_001557437.1\|2534715_2535021_-	DUF2730 family protein	M1Q558	Vibrio_phage	9.6e-13	40.4
WP_052924207.1\|2535005_2535233_-	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_000371427.1\|2535229_2535838_-	hypothetical protein	NA	NA	NA	NA
WP_052924206.1\|2535825_2536236_-	hypothetical protein	NA	NA	NA	NA
WP_052924205.1\|2536219_2536447_-	hypothetical protein	A0A0C4UQR6	Shigella_phage	1.4e-24	68.5
WP_040100373.1\|2536448_2537045_-	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	2.7e-35	43.9
WP_040100375.1\|2537130_2537580_-	Middle operon regulator	A0A0C4UR27	Shigella_phage	4.2e-41	62.7
WP_040100376.1\|2537576_2538128_-	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	7.6e-85	81.9
WP_040100378.1\|2538105_2538495_-	hypothetical protein	NA	NA	NA	NA
WP_040100379.1\|2538487_2538670_-	hypothetical protein	NA	NA	NA	NA
WP_151039372.1\|2538662_2539205_-	hypothetical protein	A0A0C4UQU2	Shigella_phage	1.5e-85	85.9
WP_001107927.1\|2539304_2539829_-	host-nuclease inhibitor Gam family protein	A0A0C4UQY5	Shigella_phage	1.4e-88	96.6
WP_040100384.1\|2539849_2540137_-	hypothetical protein	A0A0C4UQR4	Shigella_phage	1.9e-42	92.6
WP_001151278.1\|2540156_2540426_-	hypothetical protein	C9DGL5	Escherichia_phage	1.5e-22	60.7
WP_000987801.1\|2540458_2540686_-	hypothetical protein	C9DGL3	Escherichia_phage	8.9e-32	85.3
WP_001026713.1\|2540699_2541638_-	AAA family ATPase	A0A0C4UQR3	Shigella_phage	1.3e-153	88.1
WP_040100386.1\|2541676_2543665_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A0C4UR24	Shigella_phage	0.0e+00	98.2
WP_001473846.1\|2543672_2543894_-	helix-turn-helix domain-containing protein	A0A0C4UQU0	Shigella_phage	4.9e-35	100.0
WP_040100388.1\|2544081_2544606_+	hypothetical protein	A0A0C4UQZ2	Shigella_phage	3.3e-93	99.4
WP_000498836.1\|2546107_2548168_-	type II secretion system secretin GspD	NA	NA	NA	NA
WP_050938923.1\|2548197_2549157_-	type II secretion system protein GspC	NA	NA	NA	NA
WP_001324279.1\|2549174_2549585_-	type II secretion system pilot lipoprotein GspS-beta	NA	NA	NA	NA
WP_001297673.1\|2549650_2550460_-	prepilin peptidase PppA	NA	NA	NA	NA
WP_001034492.1\|2550607_2555170_-\|protease	lipoprotein metalloprotease SslE	NA	NA	NA	NA

DBSCAN-SWA_12

3509125 : 3611120

104

Escherichia_phage(39.13%)

terminase,tRNA,capsid,holin,lysis,plate,integrase,head,tail,protease,portal,transposase

attL 3538276:3538335|attR 3610031:3611315

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000560983.1\|3509125_3509563_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_001297068.1\|3509607_3510549_+	fatty acid biosynthesis protein FabY	NA	NA	NA	NA
WP_001162704.1\|3510612_3511521_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000897305.1\|3511749_3512061_+	hypothetical protein	NA	NA	NA	NA
WP_000356397.1\|3512061_3512352_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001295676.1\|3512956_3513175_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_001086388.1\|3513393_3513636_+	hypothetical protein	NA	NA	NA	NA
WP_000399648.1\|3513864_3514845_-\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_000027708.1\|3515291_3516221_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_000829013.1\|3516217_3516853_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_000331377.1\|3516849_3517752_-	formate dehydrogenase O subunit beta	NA	NA	NA	NA
WP_011310337.1\|3517764_3520815_-	formate dehydrogenase-N subunit alpha	A0A077SK27	Escherichia_phage	1.1e-07	23.8
WP_000753589.1\|3521008_3521842_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_001298963.1\|3521994_3523035_+	YiiG family protein	NA	NA	NA	NA
WP_050938947.1\|3523084_3524833_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_050938948.1\|3524832_3525903_-	aminopeptidase	NA	NA	NA	NA
WP_050938949.1\|3525892_3527344_-	PTS fructose-like transporter subunit IIBC	NA	NA	NA	NA
WP_000729597.1\|3527354_3527801_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA
WP_000619503.1\|3528101_3528416_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_001179764.1\|3528425_3529250_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_000211502.1\|3529491_3530751_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_000144072.1\|3530747_3532217_-	rhamnulokinase	NA	NA	NA	NA
WP_000217139.1\|3532504_3533341_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_001296618.1\|3533324_3534263_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_000063489.1\|3534259_3535294_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_001297064.1\|3535578_3536199_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	4.9e-64	59.8
WP_001166066.1\|3536458_3537442_+	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA
WP_001270266.1\|3537590_3538265_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
3538276:3538335	attL	NA	NA	NA	NA
WP_000399648.1\|3538384_3539365_-\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_000580417.1\|3539696_3541070_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	3.8e-16	25.9
WP_001033722.1\|3541066_3541765_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_001223800.1\|3541914_3542415_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
WP_021578869.1\|3542601_3543582_-\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	1.0e-185	99.7
WP_000777029.1\|3543651_3543945_-	helix-turn-helix domain-containing protein	Q1JS37	Enterobacteria_phage	2.7e-49	100.0
WP_001308179.1\|3544081_3544354_+	hypothetical protein	Q1JS36	Enterobacteria_phage	1.4e-47	100.0
WP_000217670.1\|3544523_3545024_+	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_000557701.1\|3545087_3545312_+	DUF2732 family protein	S4TP68	Salmonella_phage	3.0e-32	98.6
WP_042964138.1\|3545311_3545614_+	DUF5405 family protein	U5N0U2	Enterobacteria_phage	1.9e-45	97.0
WP_001113264.1\|3545613_3545838_+	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_024243679.1\|3545834_3546110_+	DUF5405 family protein	M1TAP2	Escherichia_phage	1.1e-44	98.9
WP_042964139.1\|3546099_3548385_+	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	97.9
WP_042964140.1\|3548496_3550335_+	hypothetical protein	Q2P9X5	Enterobacteria_phage	4.4e-310	85.9
WP_042964141.1\|3550684_3551719_-\|portal	phage portal protein	U5N087	Enterobacteria_phage	5.5e-201	99.1
WP_021538485.1\|3551718_3553491_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
WP_001085953.1\|3553664_3554519_+\|capsid	GPO family capsid scaffolding protein	Q778Z1	Enterobacteria_phage	4.6e-137	100.0
WP_001248558.1\|3554577_3555651_+\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	6.7e-202	100.0
WP_044860736.1\|3555654_3556398_+\|terminase	terminase endonuclease subunit	Q858W5	Yersinia_virus	2.7e-125	98.8
WP_000988633.1\|3556497_3557007_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_000846409.1\|3557006_3557210_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	3.0e-31	100.0
WP_000123123.1\|3557213_3557495_+\|holin	phage holin family protein	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_001144090.1\|3557494_3557992_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	1.2e-92	99.4
WP_044860737.1\|3558006_3558432_+	hypothetical protein	A0A0F7LBP4	Escherichia_phage	6.1e-58	94.3
WP_044860738.1\|3558419_3558845_+\|lysis	LysB family phage lysis regulatory protein	U5N3W5	Enterobacteria_phage	2.3e-65	96.5
WP_072146842.1\|3558816_3558990_+\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	2.6e-23	93.0
WP_042964144.1\|3558952_3559420_+\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	1.1e-81	99.4
WP_001001786.1\|3559412_3559865_+	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	8.2e-77	100.0
WP_001697715.1\|3559931_3560567_+\|plate	phage baseplate assembly protein V	A0A0F7LDY9	Escherichia_phage	3.1e-114	100.0
WP_000127172.1\|3560563_3560911_+	GPW/gp25 family protein	A0A0F7L9X3	Escherichia_phage	8.5e-58	99.1
WP_042964146.1\|3560915_3561824_+\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	2.0e-162	99.7
WP_042964147.1\|3561816_3562347_+\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	5.6e-101	98.3
WP_151039388.1\|3562357_3564613_+\|tail	phage tail protein	Q7Y4D4	Escherichia_virus	3.4e-232	60.9
WP_042964149.1\|3564614_3565142_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	5.4e-88	92.0
WP_170990657.1\|3565411_3565957_+	lysogenic conversion protein	Q858S7	Enterobacteria_phage	2.1e-95	97.2
WP_042964151.1\|3566286_3567477_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	4.8e-225	99.7
WP_001251408.1\|3567489_3568008_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_016235448.1\|3568064_3568340_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.8e-40	98.9
WP_000785970.1\|3568372_3568492_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_042964152.1\|3568484_3570932_+\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	0.0e+00	91.7
WP_042964153.1\|3570946_3571426_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	5.6e-84	98.7
WP_042964155.1\|3571425_3572589_+	phage late control D family protein	U5N3V4	Enterobacteria_phage	8.3e-206	99.7
WP_000468308.1\|3572670_3572889_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_001076748.1\|3573125_3574028_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
WP_000591795.1\|3574208_3575171_+	6-phosphofructokinase	NA	NA	NA	NA
WP_050939263.1\|3575490_3576480_+	sulfate/thiosulfate ABC transporter substrate-binding protein Sbp	NA	NA	NA	NA
WP_000708998.1\|3576586_3577342_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_001216325.1\|3577396_3578164_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_000802226.1\|3578271_3578871_-	YiiQ family protein	NA	NA	NA	NA
WP_000155257.1\|3578971_3579412_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000655986.1\|3579623_3579923_+	DUF406 domain-containing protein	NA	NA	NA	NA
WP_000323556.1\|3579949_3580378_+	universal stress protein UspD	NA	NA	NA	NA
WP_000796320.1\|3580382_3581129_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_001250644.1\|3581225_3582236_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000136788.1\|3582370_3583879_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_000084268.1\|3583901_3584747_-	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
WP_001296623.1\|3585172_3585418_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000872908.1\|3585502_3585988_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_000139496.1\|3586080_3587007_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_001293343.1\|3587073_3588405_-	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
WP_000208242.1\|3588414_3588945_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_000068837.1\|3589037_3589997_-	cell division protein FtsN	NA	NA	NA	NA
WP_000644904.1\|3590088_3591114_-	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA
WP_001341957.1\|3591269_3593468_-	primosomal protein N'	NA	NA	NA	NA
WP_000710769.1\|3593670_3593883_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_151039390.1\|3594042_3598227_+	rhs element protein RhsC	A0A2H4JFP5	uncultured_Caudovirales_phage	3.6e-25	32.5
WP_001323627.1\|3598228_3598552_+	hypothetical protein	NA	NA	NA	NA
WP_000797341.1\|3599458_3600067_-	YiiX family permuted papain-like enzyme	NA	NA	NA	NA
WP_000852812.1\|3600250_3600568_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA
WP_050940270.1\|3600844_3602005_+	cystathionine gamma-synthase	NA	NA	NA	NA
WP_000110772.1\|3602007_3604440_+	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA
WP_000007523.1\|3604788_3605679_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_001297636.1\|3606007_3608188_+	catalase/peroxidase HPI	NA	NA	NA	NA
WP_050940273.1\|3608281_3609187_+	cystine transporter YijE	NA	NA	NA	NA
WP_000647874.1\|3609213_3609831_-	DUF1287 domain-containing protein	NA	NA	NA	NA
WP_000399648.1\|3610139_3611120_-\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
3610031:3611315	attR	NA	NA	NA	NA

DBSCAN-SWA_13

4032863 : 4044708

Enterobacteria_phage(90.0%)

integrase

attL 4027502:4027516|attR 4060696:4060710

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4027502:4027516	attL	NA	NA	NA	NA
WP_000776997.1\|4032863_4034129_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.2e-74	41.5
WP_000418440.1\|4034187_4035081_-	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_000932801.1\|4035089_4035605_-	hypothetical protein	NA	NA	NA	NA
WP_001205027.1\|4035802_4036114_-	hypothetical protein	NA	NA	NA	NA
WP_001825860.1\|4036423_4036996_-	hypothetical protein	Q7M2A1	Enterobacteria_phage	1.9e-94	96.2
WP_021038238.1\|4037069_4037570_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_033810335.1\|4037566_4038301_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	5.2e-129	98.4
WP_001149160.1\|4038853_4039120_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_080213683.1\|4039116_4039707_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.5e-67	97.0
WP_001244670.1\|4039699_4039987_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	2.5e-47	96.8
WP_080213682.1\|4039979_4040435_+	hypothetical protein	Q7M298	Enterobacteria_phage	4.7e-64	98.2
WP_000856725.1\|4040570_4040891_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_136829793.1\|4040905_4043239_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	98.5
WP_044815386.1\|4043585_4043780_+	hypothetical protein	Q38404	Enterobacteria_phage	1.5e-24	100.0
WP_001219054.1\|4043997_4044708_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	1.8e-41	42.7
4060696:4060710	attR	NA	NA	NA	NA

DBSCAN-SWA_14

4136839 : 4208735

Escherichia_phage(33.33%)

terminase,holin,capsid,tRNA,integrase,head,tail,protease,portal,transposase

attL 4131476:4131490|attR 4166028:4166042

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4131476:4131490	attL	NA	NA	NA	NA
WP_050940454.1\|4136839_4138063_+\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	4.4e-234	98.0
WP_000040218.1\|4138349_4139069_+	hypothetical protein	NA	NA	NA	NA
WP_001404194.1\|4140167_4140530_-	hypothetical protein	K7PH61	Enterobacteria_phage	1.7e-64	97.4
WP_001401560.1\|4140520_4141057_-	5'-deoxynucleotidase	K7PKJ9	Enterobacteria_phage	2.2e-100	99.4
WP_050940458.1\|4141184_4142009_-	DUF2303 family protein	K7PJQ6	Enterobacteria_phage	1.1e-148	98.5
WP_000135680.1\|4142074_4142437_-	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_000859462.1\|4143123_4143798_-	LexA family transcriptional repressor	Q8SBF6	Shigella_phage	1.2e-132	100.0
WP_000649477.1\|4143888_4144089_+	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	7.9e-32	100.0
WP_032206597.1\|4144132_4144684_+	hypothetical protein	K7PGU3	Enterobacteria_phage	1.3e-100	98.9
WP_050940460.1\|4144680_4145517_+	ash family protein	A0A291AWU3	Escherichia_phage	8.4e-152	99.3
WP_000933942.1\|4145509_4145746_+	hypothetical protein	A0A291AX25	Escherichia_phage	1.6e-39	100.0
WP_021522644.1\|4145742_4146561_+	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	6.2e-123	87.4
WP_072095577.1\|4146557_4147052_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	2.1e-86	98.8
WP_050940465.1\|4147051_4147705_+	phage N-6-adenine-methyltransferase	A0A0P0ZCC0	Stx2-converting_phage	9.6e-127	99.1
WP_050940467.1\|4147701_4148028_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	5.9e-53	99.1
WP_000767113.1\|4148024_4148414_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_001061414.1\|4148433_4149231_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	7.5e-150	99.6
WP_063113543.1\|4149238_4150228_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.3e-193	98.5
WP_050940472.1\|4150245_4150599_+	antitermination protein	Q777W5	Enterobacteria_phage	1.6e-56	87.7
WP_050940475.1\|4150931_4151339_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.1e-43	63.2
WP_001318187.1\|4151374_4152106_+	pertussis toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	5.2e-97	74.4
WP_024186198.1\|4152656_4152872_+\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	2.2e-32	94.4
WP_050940478.1\|4152876_4153227_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.9e-37	95.2
WP_050940480.1\|4153290_4153824_+	lysozyme	Q08J98	Stx2-converting_phage	6.2e-100	93.8
WP_001228684.1\|4154040_4154226_+	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	2.7e-18	78.0
WP_001323403.1\|4154449_4155229_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_000255944.1\|4155228_4156251_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_135259168.1\|4156307_4156640_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	1.7e-55	99.0
WP_050939787.1\|4156787_4157270_+\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	1.1e-84	98.1
WP_050939785.1\|4157269_4159027_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.5
WP_000478567.1\|4159038_4159221_+	hypothetical protein	A0A1B5FP99	Escherichia_phage	1.1e-24	96.7
WP_000466244.1\|4159220_4160462_+\|portal	phage portal protein	U5P411	Shigella_phage	2.2e-241	99.3
WP_001193631.1\|4160439_4161090_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-119	100.0
WP_050939783.1\|4161104_4162310_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	3.6e-220	98.0
WP_000601355.1\|4162360_4162549_+	hypothetical protein	A0A1B5FP98	Escherichia_phage	7.2e-27	100.0
WP_050939781.1\|4162560_4162866_+\|head,tail	phage gp6-like head-tail connector protein	A0A1B5FP86	Escherichia_phage	1.6e-39	92.1
WP_050939779.1\|4162874_4163213_+\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	4.6e-56	98.2
WP_050939778.1\|4163209_4163659_+	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	3.9e-63	80.5
WP_050939774.1\|4163655_4164000_+	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	2.1e-56	99.1
WP_050939772.1\|4164060_4164765_+	immunoglobulin domain-containing protein	A0A1B5FP82	Escherichia_phage	7.9e-119	96.6
WP_000164661.1\|4164779_4165151_+\|tail	tail assembly protein	A0A1B5FP91	Escherichia_phage	6.5e-64	100.0
WP_050939796.1\|4165174_4165453_+	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	1.6e-43	97.8
WP_077793285.1\|4165499_4168775_+	tape measure protein	A0A1B5FPE2	Escherichia_phage	3.2e-303	80.2
4166028:4166042	attR	NA	NA	NA	NA
WP_050939768.1\|4168778_4169246_+	hypothetical protein	A0A286S298	Klebsiella_phage	8.3e-40	52.3
WP_050939762.1\|4169242_4169725_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	1.6e-57	69.2
WP_050939760.1\|4169735_4170116_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	9.0e-61	82.5
WP_050939757.1\|4170112_4172815_+	MoaD/ThiS family protein	A0A286S259	Klebsiella_phage	0.0e+00	58.1
WP_157904466.1\|4172857_4174768_+\|tail	phage tail protein	B1GS50	Salmonella_phage	5.1e-27	46.6
WP_072095528.1\|4174739_4175144_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_050940596.1\|4176570_4177098_+	hypothetical protein	Q9LA59	Enterobacterial_phage	3.7e-60	73.2
WP_050939632.1\|4177485_4177734_-	DinI family protein	A5LH55	Enterobacteria_phage	4.5e-37	96.3
WP_000202564.1\|4177953_4179540_+	peptide chain release factor 3	D0R0F5	Streptococcus_phage	5.3e-30	24.9
WP_001295748.1\|4179932_4180538_+	molecular chaperone OsmY	NA	NA	NA	NA
WP_000490275.1\|4180664_4180826_+	DUF1328 domain-containing protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2
WP_001299799.1\|4180947_4182021_+	patatin family protein	NA	NA	NA	NA
WP_000563055.1\|4182017_4182800_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_001088405.1\|4182912_4183776_-	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
WP_047087182.1\|4183747_4185298_-	YjjI family glycine radical enzyme	NA	NA	NA	NA
WP_001295412.1\|4185555_4186335_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_000477811.1\|4186461_4187784_+	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	2.3e-79	39.8
WP_000816471.1\|4187835_4189059_+	phosphopentomutase	NA	NA	NA	NA
WP_000224877.1\|4189138_4189858_+	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_000566138.1\|4190132_4190282_-	hypothetical protein	NA	NA	NA	NA
WP_000105865.1\|4190313_4191330_-	lipoate--protein ligase LplA	NA	NA	NA	NA
WP_000124615.1\|4191357_4192002_-	YtjB family periplasmic protein	NA	NA	NA	NA
WP_001132955.1\|4192107_4193076_+	phosphoserine phosphatase	NA	NA	NA	NA
WP_151039448.1\|4193124_4194507_+	DNA repair protein RadA	NA	NA	NA	NA
WP_000093810.1\|4194527_4195760_+	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	A0A0C5K935	Enterococcus_phage	1.6e-82	42.6
WP_000046749.1\|4196066_4197734_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	3.7e-42	26.4
WP_000409451.1\|4197944_4199882_+	murein transglycosylase	A0A1P8CWQ1	Bacillus_phage	4.0e-11	34.8
WP_000068679.1\|4199971_4200298_+	trp operon repressor	NA	NA	NA	NA
WP_001338221.1\|4200339_4200852_-	inosine/xanthosine triphosphatase	NA	NA	NA	NA
WP_050939635.1\|4200903_4201551_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB	NA	NA	NA	NA
WP_000371666.1\|4201547_4202417_-	MDR efflux pump AcrAB transcriptional activator RobA	NA	NA	NA	NA
WP_000875487.1\|4202627_4203101_+	protein CreA	NA	NA	NA	NA
WP_001188659.1\|4203113_4203803_+	two-component system response regulator CreB	W8CYM9	Bacillus_phage	8.8e-30	35.3
WP_001219614.1\|4203802_4205227_+	two-component system sensor histidine kinase CreC	Q8QKV7	Ectocarpus_siliculosus_virus	1.6e-09	20.4
WP_000920337.1\|4205284_4206637_+	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_001194358.1\|4206696_4207413_-	two-component system response regulator ArcA	NA	NA	NA	NA
WP_001303782.1\|4207508_4207649_+	hypothetical protein	NA	NA	NA	NA
WP_001223181.1\|4208048_4208735_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_15

4406108 : 4468972

Escherichia_phage(20.0%)

plate,transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295561.1\|4406108_4407461_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240896.1\|4407490_4409923_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|4410044_4410530_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139279.1\|4410533_4411559_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|4411663_4412119_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|4412122_4412911_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000166360.1\|4412910_4414059_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569401.1\|4414055_4414652_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	3.9e-26	39.8
WP_001294757.1\|4414686_4418169_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000055741.1\|4418181_4419141_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001020973.1\|4419239_4421381_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901098.1\|4421437_4421827_+	VOC family protein	NA	NA	NA	NA
WP_000176525.1\|4421891_4423190_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062312.1\|4423238_4423499_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|4423485_4423686_-	YaeP family protein	NA	NA	NA	NA
WP_001185294.1\|4423851_4424397_+	YaeQ family protein	NA	NA	NA	NA
WP_000635545.1\|4424393_4424816_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239192.1\|4424829_4425540_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_001325359.1\|4425694_4426519_-	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_050938964.1\|4426571_4428290_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094031.1\|4428400_4429108_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202329.1\|4429104_4429509_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874224.1\|4429626_4430442_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294600.1\|4430481_4431135_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593994.1\|4431127_4432159_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140186.1\|4432346_4432919_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000997010.1\|4438669_4439473_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.4e-39	36.2
WP_000255944.1\|4440156_4441179_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001323403.1\|4441178_4441958_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_001230983.1\|4442583_4443384_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000211686.1\|4443461_4444232_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644685.1\|4444279_4445638_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001052721.1\|4445709_4446465_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_001295200.1\|4446498_4447221_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917883.1\|4447217_4447685_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001297205.1\|4447749_4448481_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-40	39.0
WP_001086139.1\|4449019_4449805_+	hypothetical protein	NA	NA	NA	NA
WP_000908052.1\|4450431_4451346_-	hypothetical protein	NA	NA	NA	NA
WP_001284199.1\|4451389_4451872_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001087745.1\|4451895_4453248_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_122985538.1\|4453258_4456693_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001240524.1\|4456801_4458214_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_050940106.1\|4458218_4458962_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_000614400.1\|4458958_4461724_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.8e-81	30.8
WP_000343289.1\|4461732_4462494_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000246444.1\|4462498_4463830_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001080149.1\|4463832_4464357_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_001113713.1\|4464353_4465634_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_050940104.1\|4465658_4466741_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000393844.1\|4466704_4468555_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000611742.1\|4468558_4468972_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_16

4503659 : 4513766

Enterobacteria_phage(100.0%)

integrase

attL 4501790:4501803|attR 4514387:4514400

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4501790:4501803	attL	NA	NA	NA	NA
WP_075631356.1\|4503659_4504826_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.5e-143	61.9
WP_072648910.1\|4504837_4506082_+	ATP-binding protein	NA	NA	NA	NA
WP_072648911.1\|4506074_4506728_+	HNH endonuclease	NA	NA	NA	NA
WP_151039271.1\|4506941_4507514_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	4.2e-94	96.8
WP_000638628.1\|4507587_4508088_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_151039273.1\|4508084_4508819_-	glycoprotein 3	Q7M2A2	Enterobacteria_phage	8.8e-129	98.8
WP_001149160.1\|4509371_4509638_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_151078000.1\|4509634_4510234_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	2.5e-49	81.0
WP_052897488.1\|4510226_4510514_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	9.5e-47	95.8
WP_151039701.1\|4510506_4510962_+	hypothetical protein	Q7M298	Enterobacteria_phage	8.0e-64	98.2
WP_000856725.1\|4511097_4511418_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_136829793.1\|4511432_4513766_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	98.5
4514387:4514400	attR	NA	NA	NA	NA

DBSCAN-SWA_17

4766464 : 4835854

Enterobacteria_phage(42.86%)

terminase,tRNA,lysis,capsid,integrase,head,tail,protease,portal,transposase

attL 4776626:4776672|attR 4827328:4827374

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912345.1\|4766464_4767850_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143552.1\|4767885_4768407_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|4768514_4768727_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_050938753.1\|4768728_4769595_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	37.5
WP_000776555.1\|4770075_4770618_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_050938752.1\|4770837_4771530_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_050938751.1\|4771560_4774170_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000691054.1\|4774182_4775190_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001250422.1\|4775200_4775716_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805428.1\|4775718_4776351_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
4776626:4776672	attL	NA	NA	NA	NA
WP_001624790.1\|4776685_4777849_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	5.2e-200	86.6
WP_000206812.1\|4778075_4778381_-	hypothetical protein	U5P0J0	Shigella_phage	9.2e-48	95.0
WP_000008165.1\|4778734_4779271_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	4.8e-100	98.3
WP_135259079.1\|4779398_4780223_-	DUF2303 family protein	U5P439	Shigella_phage	1.9e-148	98.5
WP_000135680.1\|4780288_4780651_-	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_000559922.1\|4781121_4781637_+	hypothetical protein	NA	NA	NA	NA
WP_135259078.1\|4781956_4782649_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	1.3e-126	99.6
WP_001191674.1\|4782746_4783007_+	helix-turn-helix transcriptional regulator	S5FKP1	Shigella_phage	7.1e-41	100.0
WP_000515847.1\|4782999_4783551_+	hypothetical protein	S5FXP0	Shigella_phage	2.9e-100	98.4
WP_001250269.1\|4783726_4783906_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104986.1\|4783895_4784837_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.9e-152	99.0
WP_000255944.1\|4785103_4786126_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001323403.1\|4786125_4786905_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_000210176.1\|4787287_4787614_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.3e-52	97.2
WP_000767127.1\|4787610_4788000_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
WP_001061408.1\|4788019_4788817_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	7.5e-150	99.6
WP_089613523.1\|4788824_4789814_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.4e-190	97.0
WP_001204780.1\|4789831_4790215_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.0e-56	84.2
WP_151039280.1\|4790404_4791502_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.8e-154	76.3
WP_000670959.1\|4792090_4792306_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	3.4e-33	98.6
WP_001135281.1\|4792305_4792803_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	1.1e-90	98.2
WP_001228697.1\|4793019_4793202_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	1.4e-16	78.3
WP_000738500.1\|4793292_4793586_-	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	5.7e-47	97.9
WP_089613521.1\|4793876_4794287_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.7e-71	98.5
WP_001031427.1\|4794572_4794779_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
WP_001421937.1\|4794943_4795138_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	8.7e-28	100.0
WP_000453587.1\|4795526_4796072_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001027269.1\|4796046_4797972_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
WP_000198149.1\|4797968_4798175_+	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001316285.1\|4798171_4799773_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.9e-310	99.4
WP_016244345.1\|4799753_4801085_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.8e-226	96.3
WP_001565292.1\|4801094_4801427_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.3e-51	91.8
WP_000118193.1\|4801482_4802508_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	6.4e-186	96.2
WP_016244346.1\|4802549_4802945_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	3.2e-53	89.4
WP_000753019.1\|4802956_4803310_+\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	2.6e-62	98.3
WP_000975048.1\|4803321_4803900_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	7.8e-80	99.0
WP_151039283.1\|4803896_4804292_+\|tail	phage tail protein	A0A0K2FIF4	Enterobacteria_phage	1.1e-69	99.2
WP_001349920.1\|4804299_4805040_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	7.8e-133	100.0
WP_000479153.1\|4805055_4805478_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.7e-73	100.0
WP_000459457.1\|4805459_4805894_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000840258.1\|4805886_4808448_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.6
WP_000847379.1\|4808444_4808774_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_001152667.1\|4808773_4809472_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	8.1e-132	98.3
WP_001361264.1\|4809477_4810221_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.1e-150	98.4
WP_000090917.1\|4810157_4810790_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	5.9e-97	100.0
WP_151039286.1\|4810850_4814249_+	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	0.0e+00	89.3
WP_089613516.1\|4814315_4814915_+	Ail/Lom family outer membrane beta-barrel protein	K7PJP9	Enterobacteria_phage	6.3e-109	98.0
WP_089613515.1\|4814979_4818582_+\|tail	prophage tail fiber N-terminal domain-containing protein	K7PGT9	Enterobacteria_phage	0.0e+00	97.7
WP_000488338.1\|4818881_4819772_-	manganese catalase family protein	NA	NA	NA	NA
WP_001079482.1\|4819790_4820297_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001166090.1\|4820333_4820834_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000134810.1\|4820912_4821095_-	general stress protein	NA	NA	NA	NA
WP_000239881.1\|4821592_4822261_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001226371.1\|4822805_4824290_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201812.1\|4824476_4825430_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_000361110.1\|4825928_4826513_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001298108.1\|4826537_4826975_-	acetyltransferase	NA	NA	NA	NA
WP_050938750.1\|4827417_4828179_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
4827328:4827374	attR	NA	NA	NA	NA
WP_001224567.1\|4828361_4829252_-	DUF4434 family protein	NA	NA	NA	NA
WP_001580085.1\|4829252_4832225_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_000383951.1\|4832211_4834449_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_000420923.1\|4834717_4835854_-\|transposase	ISAs1-like element ISEc1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_18

5263441 : 5310333

Escherichia_phage(50.0%)

terminase,holin,capsid,integrase,head,tail,protease,portal,transposase

attL 5259512:5259527|attR 5298380:5298395

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5259512:5259527	attL	NA	NA	NA	NA
WP_000156526.1\|5263441_5265202_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877161.1\|5265387_5265840_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000750416.1\|5265915_5266956_-	porin OmpA	NA	NA	NA	NA
WP_000288710.1\|5267312_5267822_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_000839153.1\|5268040_5268670_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA
WP_072095558.1\|5268632_5270795_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261235.1\|5270804_5271251_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420537.1\|5271373_5273428_+	DNA helicase IV	A7KV33	Bacillus_phage	5.9e-21	27.9
WP_000424181.1\|5273459_5273918_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847791.1\|5274013_5274676_-	DUF2057 family protein	NA	NA	NA	NA
WP_000665217.1\|5274848_5275262_+	CoA-binding protein	NA	NA	NA	NA
WP_001295356.1\|5275306_5275624_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000116288.1\|5275681_5276872_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000048252.1\|5276966_5277245_+	acylphosphatase	NA	NA	NA	NA
WP_000904442.1\|5277241_5277571_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000375136.1\|5277661_5278321_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-48	55.3
WP_072095559.1\|5278728_5279748_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.9e-85	49.4
WP_000273158.1\|5279716_5279968_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_050940245.1\|5280034_5282500_-	exonuclease	V5UQJ3	Shigella_phage	7.3e-103	42.6
WP_050940247.1\|5282577_5282781_-	DUF1482 family protein	NA	NA	NA	NA
WP_032215066.1\|5282777_5282966_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_050940250.1\|5283520_5284033_+	hypothetical protein	NA	NA	NA	NA
WP_000255944.1\|5284640_5285663_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001323403.1\|5285662_5286442_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_001678562.1\|5287114_5287270_-	DUF1391 family protein	M4QQ57	Salicola_phage	4.0e-07	53.2
WP_042973537.1\|5287435_5287843_-	helix-turn-helix domain-containing protein	K7PM82	Enterobacteria_phage	9.8e-13	53.1
WP_000920567.1\|5287925_5288156_+	dicB transcriptional regulator DicC	NA	NA	NA	NA
WP_050940044.1\|5288139_5288691_+	hypothetical protein	NA	NA	NA	NA
WP_050940042.1\|5288662_5289703_+	DNA-binding protein	A0A0U2RT81	Escherichia_phage	9.6e-97	92.0
WP_157902152.1\|5289614_5290157_+	replication protein	A0A0U2JGJ0	Escherichia_phage	8.3e-84	96.7
WP_050940040.1\|5290191_5290977_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	7.4e-49	47.4
WP_077793295.1\|5291033_5291288_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.2e-21	65.5
WP_050940036.1\|5291284_5291581_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	5.4e-45	93.7
WP_050940034.1\|5291773_5292085_+	hypothetical protein	A0A222YY67	Escherichia_phage	6.9e-51	83.5
WP_050940032.1\|5292212_5292395_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.3e-25	95.0
WP_032215076.1\|5292387_5292564_+	hypothetical protein	A0A2R2X2A8	Escherichia_phage	3.3e-26	91.4
WP_077793294.1\|5292560_5292980_+	ead/Ea22-like family protein	A0A2R2Z315	Escherichia_phage	3.3e-40	82.7
WP_050940030.1\|5293088_5293376_-	hypothetical protein	Q3LZN5	Bacteriophage	8.7e-16	50.5
WP_050940027.1\|5294225_5294486_+	hypothetical protein	NA	NA	NA	NA
WP_063113410.1\|5294552_5294831_+	hypothetical protein	I6PCV7	Cronobacter_phage	3.3e-12	50.0
WP_050940018.1\|5294832_5295879_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	5.0e-109	54.8
WP_050940016.1\|5295891_5296263_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	9.8e-36	64.5
WP_050940013.1\|5296252_5296624_+	antitermination protein	Q777W5	Enterobacteria_phage	1.8e-53	82.5
WP_050940011.1\|5296777_5297596_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000917767.1\|5297882_5298080_+	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_050940008.1\|5298190_5299237_+	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	2.2e-189	91.9
5298380:5298395	attR	NA	NA	NA	NA
WP_032215181.1\|5300007_5300397_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	7.1e-45	83.8
WP_047649223.1\|5300386_5300665_+\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	2.4e-34	83.7
WP_050940005.1\|5300666_5301212_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	2.4e-91	85.5
WP_050940003.1\|5301279_5301561_+	hypothetical protein	NA	NA	NA	NA
WP_050940000.1\|5302218_5302767_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	2.1e-58	85.6
WP_050939997.1\|5302738_5304655_+\|terminase	phage terminase large subunit family protein	O64317	Escherichia_phage	1.5e-252	64.8
WP_000640654.1\|5304658_5304868_+	gpW family protein	K7PM10	Enterobacteria_phage	1.0e-10	49.2
WP_050552957.1\|5304912_5306436_+\|portal	phage portal protein	E4WL21	Enterobacteria_phage	6.8e-184	63.8
WP_050939995.1\|5306425_5308042_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	1.0e-100	53.4
WP_050939993.1\|5308082_5308418_+\|head	head decoration protein	A0A0K2FIF9	Escherichia_phage	6.8e-20	49.1
WP_040073334.1\|5308487_5309516_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	5.8e-110	58.7
WP_042973861.1\|5309564_5309945_+	DNA packaging protein	A0A2R9YJP4	Escherichia_phage	2.8e-09	61.1
WP_000753028.1\|5309958_5310333_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	3.1e-29	59.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP051656

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20958 : 159015

101

Escherichia_phage(25.0%)

tRNA,transposase,integrase,protease

attL 120127:120186|attR 159043:160997

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050940639.1\|20958_22494_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.1e-101	40.6
WP_000695052.1\|23925_24246_+	hypothetical protein	NA	NA	NA	NA
WP_032284964.1\|24337_24628_-	hypothetical protein	NA	NA	NA	NA
WP_032285356.1\|25085_26456_-	shufflon system plasmid conjugative transfer pilus tip adhesin PilV	K7P7Q7	Enterobacteria_phage	4.2e-23	39.1
WP_050437790.1\|26412_26694_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_050940639.1\|27683_29219_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.1e-101	40.6
WP_000255944.1\|29612_30635_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001323403.1\|30634_31414_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_050939798.1\|32752_33010_+	conjugal transfer protein TrbE	NA	NA	NA	NA
WP_050939800.1\|33002_33746_+	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA
WP_000549794.1\|33870_34152_+	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA
WP_050939804.1\|34138_34684_+	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
WP_072095529.1\|34613_34955_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_050939810.1\|34941_35334_+	F-type conjugal transfer protein TrbF	NA	NA	NA	NA
WP_050939813.1\|35320_36694_+	conjugal transfer protein TraH	NA	NA	NA	NA
WP_050939816.1\|36690_39516_+	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA
WP_000850423.1\|40035_40767_+	complement resistance protein TraT	NA	NA	NA	NA
WP_069903968.1\|41019_43200_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_000911315.1\|43208_43607_-\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA
WP_000450532.1\|43606_43834_-	toxin-antitoxin system antitoxin VapB	NA	NA	NA	NA
WP_050939819.1\|43915_49186_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_050939821.1\|49205_49946_+	conjugal transfer pilus acetylase TraX	A0A077JBM8	Xanthomonas_phage	1.0e-07	29.9
WP_000868986.1\|50004_50865_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	9.7e-10	23.5
WP_000139319.1\|50967_51525_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_001327131.1\|51679_51883_+	hypothetical protein	NA	NA	NA	NA
WP_000760078.1\|52627_53089_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	7.4e-17	33.1
WP_001109066.1\|53191_53575_+	hypothetical protein	NA	NA	NA	NA
WP_047649939.1\|53797_54004_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_000083838.1\|54284_54533_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_001365705.1\|54779_54854_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_000131011.1\|54846_55704_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_157905840.1\|56618_56795_+	hypothetical protein	NA	NA	NA	NA
WP_050939068.1\|57793_58798_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_072095473.1\|59048_59714_-\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	2.9e-06	27.9
WP_077793267.1\|59748_59907_+	toxin-antitoxin system protein	NA	NA	NA	NA
WP_050939063.1\|60226_60694_+	DNA polymerase III subunit epsilon	A2I2Z6	Vibrio_virus	2.7e-06	49.1
WP_050939085.1\|61018_61477_+	hypothetical protein	NA	NA	NA	NA
WP_050939060.1\|62069_62351_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_050939058.1\|62350_62626_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_050939055.1\|62731_63013_+	hypothetical protein	NA	NA	NA	NA
WP_050939053.1\|63249_63501_-	hypothetical protein	NA	NA	NA	NA
WP_050939047.1\|66825_67344_+	alpha-hemolysin-activating lysine-acyltransferase HlyC	NA	NA	NA	NA
WP_050939044.1\|67344_70419_+	RTX toxin hemolysin HlyA	NA	NA	NA	NA
WP_050939042.1\|70489_72613_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	8.4e-47	29.7
WP_050939040.1\|72631_74068_+	alpha-hemolysin T1SS ABC transporter subunit HlyD	NA	NA	NA	NA
WP_169072621.1\|76383_77085_+	hypothetical protein	NA	NA	NA	NA
WP_050939030.1\|78111_81156_+	cytotoxic necrotizing factor CNF2	NA	NA	NA	NA
WP_072095470.1\|83098_83875_+	cytolethal distending toxin type III subunit CdtA	G1BEM3	Escherichia_phage	5.6e-126	94.2
WP_000759934.1\|83871_84681_+	cytolethal distending toxin type III/V nuclease subunit CdtB	G1BEM4	Escherichia_phage	4.0e-151	100.0
WP_050939027.1\|84695_85241_+	cytolethal distending toxin type III subunit CdtC	M1SNM4	Escherichia_phage	1.0e-97	97.2
WP_050939024.1\|87143_88340_+	hypothetical protein	W6JL68	Anomala_cuprea_entomopoxvirus	8.3e-44	42.0
WP_050939019.1\|90128_91238_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_050939074.1\|91309_92212_+	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_021573890.1\|95598_96159_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.2e-46	55.1
WP_001253824.1\|96487_97435_-	DMT family transporter	NA	NA	NA	NA
WP_000976359.1\|102690_102960_-	hypothetical protein	NA	NA	NA	NA
WP_172636469.1\|104883_108042_-	AIDA repeat-containing protein	NA	NA	NA	NA
WP_000040077.1\|108034_109255_-	autotransporter strand-loop-strand O-heptosyltransferase	NA	NA	NA	NA
WP_050939008.1\|109772_111311_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.6e-297	99.2
WP_000612591.1\|111360_111708_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001171554.1\|111704_112085_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_040072486.1\|113104_114052_+\|protease	omptin family outer membrane protease OmpP	NA	NA	NA	NA
WP_072095474.1\|114156_115644_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_135259140.1\|116394_117135_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_000361618.1\|117419_118397_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	3.0e-100	59.2
WP_135259203.1\|119873_120200_+	hypothetical protein	NA	NA	NA	NA
120127:120186	attL	NA	NA	NA	NA
WP_000255944.1\|120213_121236_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001323403.1\|121235_122015_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_032285357.1\|122637_123150_-	M agglutinin-type afimbrial adhesin BmaE/AfaE-8	NA	NA	NA	NA
WP_032285358.1\|123685_124105_-	adhesin	NA	NA	NA	NA
WP_032285371.1\|124120_126631_-	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_032285359.1\|126877_127645_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_001323645.1\|127722_128067_-	adhesin biosynthesis transcription regulatory family protein	NA	NA	NA	NA
WP_032285360.1\|128609_128798_+	dolichol monophosphate mannose synthase	NA	NA	NA	NA
WP_000624722.1\|130560_130911_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_032285361.1\|130907_131333_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.7e-47	97.9
WP_050940111.1\|131617_131881_-	hypothetical protein	NA	NA	NA	NA
WP_050561356.1\|132018_132228_+	hypothetical protein	NA	NA	NA	NA
WP_050940109.1\|132390_136290_-\|protease	serine protease autotransporter EspP	Q9LA58	Enterobacterial_phage	4.7e-237	40.3
WP_001189111.1\|139995_141504_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.6e-44	31.8
WP_001104898.1\|142486_142708_-	hypothetical protein	NA	NA	NA	NA
WP_000086174.1\|142708_143392_-	DNA methylase	A0A2I7RE86	Vibrio_phage	8.7e-30	36.4
WP_172636184.1\|143589_144027_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	4.1e-25	47.6
WP_085004465.1\|144026_145301_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.7e-141	59.7
WP_001278818.1\|145302_145719_-	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_077166745.1\|145711_146692_-	plasmid segregation protein ParM	A0A0A7NPX4	Enterobacteria_phage	2.2e-79	51.4
WP_000030199.1\|147105_147414_-	hypothetical protein	NA	NA	NA	NA
WP_001144036.1\|147500_148145_-	ParA family protein	NA	NA	NA	NA
WP_063121642.1\|148323_149130_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	9.2e-55	95.6
WP_032285172.1\|149130_149436_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000813639.1\|149437_149656_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_050940296.1\|150504_151743_+	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	4.8e-26	27.8
WP_172636186.1\|151726_152554_+	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_032280058.1\|152556_153573_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000379710.1\|153574_153844_+	SemiSWEET transporter	NA	NA	NA	NA
WP_135259177.1\|153840_155373_+	NAD(P)-binding domain-containing protein	A0A2H4J2Q2	uncultured_Caudovirales_phage	5.2e-06	41.5
WP_001825139.1\|155404_155857_-	N-acetyltransferase	NA	NA	NA	NA
WP_000371887.1\|156183_156441_+	hypothetical protein	NA	NA	NA	NA
WP_032285175.1\|156440_157031_+	hypothetical protein	NA	NA	NA	NA
WP_001323403.1\|157213_157993_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_000255944.1\|157992_159015_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
159043:160997	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044313

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP051656

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection