CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044314	Escherichia coli strain RM9245 chromosome, complete genome	4 crisprs	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,DEDDh,DinG,c2c9_V-U4	0	12	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044314_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044314_1

752780-753237

TypeI-E

I-E

Consensus_repeat	Method
CCCGGTTTATCCCCGCTGGCGCGGGGAACACC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

7 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP044314_1

>merge|NZ_CP044314|1|752780-753237|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
CCCGGTTTATCCCCGCTGGCGCGGGGAACACCAACGAAATTGAGAGCAAAGGTCGCTACGCAGCGGTTTATCCCCGCTGGCGCGGGGAACACTTCATGAAGCACGCTGGAATTTATATTTGCCCCGGTTTATCCCCGCTGGCGCGGGGAACACCCGTTAAAATATTCGCCCGTTGTGTAAGCGTACGGTTTATCCCCGCTGGCGCGGGGAACACATCTCCAGCGCCTTTTCGACGCAACGGTGCGCCGGTTTATCCCCGCTGGCGCGGGGAACACTGACCGATTTTATTGATCGCCCGATAGACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCAGATTCCGCTTTCTCTACCTTCTCTTTTTCCGGTTTATCCCCGCTGGCGCGGGGAACACGGGTTGTGCGCCCTGGTGGGCGAAAACGGTGGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044314|1|1|752780-752933|PILER-CR
CCCGGTTTATCCCCGCTGGCGCGGGGAACACC	AACGAAATTGAGAGCAAAGGTCGCTACGC
AGCGGTTTATCCCCGCTGGCGCGGGGAACACT	TCATGAAGCACGCTGGAATTTATATTTGC
CCCGGTTTATCCCCGCTGGCGCGGGGAACACCCGTTAAAATATTCGCCCGTTGTGTAAGCGTACGGTTTATCCCCGCTGGCGCGGGGAACACATCTCCAGCGCCTTTTCGACGCAACGGTGCGCCGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG


>NZ_CP044314|1|1|752782-753237|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAACGAAATTGAGAGCAAAGGTCGCTACGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCATGAAGCACGCTGGAATTTATATTTGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTAAAATATTCGCCCGTTGTGTAAGCGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCTCCAGCGCCTTTTCGACGCAACGGTGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044314|1|1|752782-753237|CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAACGAAATTGAGAGCAAAGGTCGCTACGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCATGAAGCACGCTGGAATTTATATTTGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTAAAATATTCGCCCGTTGTGTAAGCGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCTCCAGCGCCTTTTCGACGCAACGGTGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044314|1|2|753026-753237|PILER-CR
	AACGAAATTGAGAGCAAAGGTCGCTACGC
AGCGGTTTATCCCCGCTGGCGCGGGGAACACT	TCATGAAGCACGCTGGAATTTATATTTGC
CCCGGTTTATCCCCGCTGGCGCGGGGAACACCCGTTAAAATATTCGCCCGTTGTGTAAGCGTACGGTTTATCCCCGCTGGCGCGGGGAACACATCTCCAGCGCCTTTTCGACGCAACGGTGCGCCGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044314.1\|WP_000029315.1\|757002_757539_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP044314.1\|WP_000568943.1\|745335_746385_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP044314.1\|WP_001219242.1\|746381_746861_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP044314.1\|WP_000206429.1\|755932_756988_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP044314.1\|WP_001090346.1\|749072_750500_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP044314.1\|WP_000956458.1\|762088_762241_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP044314.1\|WP_001173673.1\|748467_749073_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP044314.1\|WP_000517476.1\|747589_747901_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP044314.1\|WP_001246104.1\|748094_748418_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP044314.1\|WP_001084076.1\|757535_759098_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP044314.1\|WP_001233938.1\|759195_761895_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP044314.1\|WP_000372108.1\|750501_751410_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP044314.1\|WP_000085053.1\|755175_755922_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP044314.1\|WP_000039843.1\|762505_763240_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP044314.1\|WP_000144848.1\|753623_754547_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP044314.1\|WP_000063176.1\|753333_753627_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP044314.1\|WP_001295182.1\|744593_745355_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP044314.1\|WP_000246136.1\|746860_747571_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP044314.1\|WP_000490440.1\|751661_752699_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP044314.1\|WP_000281423.1\|754543_755194_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869

Protein	Function_ID	Function_description	E-value
NZ_CP044314.1\|WP_000029315.1\|757002_757539_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.47989e-27
NZ_CP044314.1\|WP_000568943.1\|745335_746385_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP044314.1\|WP_001219242.1\|746381_746861_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP044314.1\|WP_000206429.1\|755932_756988_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.2231e-155
NZ_CP044314.1\|WP_001090346.1\|749072_750500_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP044314.1\|WP_000956458.1\|762088_762241_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP044314.1\|WP_001173673.1\|748467_749073_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP044314.1\|WP_000517476.1\|747589_747901_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP044314.1\|WP_001246104.1\|748094_748418_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP044314.1\|WP_001084076.1\|757535_759098_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP044314.1\|WP_001233938.1\|759195_761895_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.43239e-178
NZ_CP044314.1\|WP_000372108.1\|750501_751410_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP044314.1\|WP_000085053.1\|755175_755922_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.27305e-47
NZ_CP044314.1\|WP_000039843.1\|762505_763240_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NZ_CP044314.1\|WP_000144848.1\|753623_754547_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.03875e-156
NZ_CP044314.1\|WP_000063176.1\|753333_753627_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP044314.1\|WP_001295182.1\|744593_745355_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP044314.1\|WP_000246136.1\|746860_747571_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.02844e-120
NZ_CP044314.1\|WP_000490440.1\|751661_752699_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP044314.1\|WP_000281423.1\|754543_755194_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.48092e-91

>NZ_CP044314.1|WP_000490440.1|751661_752699_+|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTASDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSQGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRFDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP044314.1|WP_000372108.1|750501_751410_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP044314.1|WP_001090346.1|749072_750500_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARIDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP044314.1|WP_001173673.1|748467_749073_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP044314.1|WP_001246104.1|748094_748418_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP044314.1|WP_000517476.1|747589_747901_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP044314.1|WP_000246136.1|746860_747571_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQIPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP044314.1|WP_001219242.1|746381_746861_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP044314.1|WP_000568943.1|745335_746385_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP044314.1|WP_001295182.1|744593_745355_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP044314.1|WP_000063176.1|753333_753627_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP044314.1|WP_000144848.1|753623_754547_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPTIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP044314.1|WP_000281423.1|754543_755194_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTAQLLPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGRDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP044314.1|WP_000085053.1|755175_755922_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQGGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDHFHDLKVSLPKLQDECWWEGEHDGLVVSKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP044314.1|WP_000206429.1|755932_756988_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLSLLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP044314.1|WP_000029315.1|757002_757539_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDGHKATLRKWHEELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTCLSAVKTPDDLLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP044314.1|WP_001084076.1|757535_759098_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGIRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQDDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHRFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADGLLSKWNKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP044314.1|WP_001233938.1|759195_761895_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPTSSLSLFHSRFAFSDRQRIETKTLARFGKEGSSQRAGKALISTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPDEEWFGSAMRNSAYIYPDHGRIWLTQRVLRQQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYTTGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDNESCGYSATEGLIGKVG
>NZ_CP044314.1|WP_000956458.1|762088_762241_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP044314.1|WP_000039843.1|762505_763240_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP044314_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044314_2

768739-769987

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

20 spacers

cas3,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NZ_CP044314_2

>merge|NZ_CP044314|2|768739-769987|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCTTTTGTGCCCTGGCGTTTTGCTGGCTCTCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTTTGCCGCTGTCAGCATTGCTGGCGCGTAATACGGTTTATCCCCGCTGGCGCGGGGAACACCGTTCCTCGCATTATTTCCCTTTCTTCTTCGACGGTTTATCCCCGCTGGCGCGGGGAACACTCCGCATCGCTCATGCCGATAATCGGGCTCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTCGGCAGAGAATCGTTCGATTGCCCCTACATCGGTTTATCCCCGCTGGCGCGGGGAACACATCAACGTTATCGATTACAACTGACAGGGAGCCGGTTTATCCCCGCTGGCGCGGGGAACACCCGAACGGCTCGGCGCTCTCATACCCCCAAATCGGTTTATCCCCGCTGGCGCGGGGAACACTTACCGAAGTAATGGTCGAAACACAGAATTTTCGGTTTATCCCCGCTGGCGCGGGGAACACAGCACCACTGAAAATCTGTACGAAAGCAATAGCGGTTTATCCCCGCTGGCGCGGGGAACACTATTTCTGTAATGCTCAAAGATATAGCCGGATCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCAAAACAAACATCGGGGTACGCGTGGTGCCGGTTTATCCCCGCTGGCGCGGGGAACACAAAATTCATATTGATAAACACCGCGTTTGTATCGGTTTATCCCCGCTGGCGCGGGGAACACTTTACTACAATAGGTGGACACGCTACGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACACCGCCGCGGACTCACGAGCAGGCCATCACAGACCGGTTTATCCCCGCTGGCGCGGGGAACACCAGTTGTCTGATGTGTCGCTGGCCTGGCGGCACGGTTTATCCCCGCTGGCGCGGGGAACACCCGTTCATATTCGTTTCCTCGTGGCGCGATCTAGGTTTATCCCCGCTGGCGCGGGGAACACAATTGAGACGTTCCACGCAATTAAACAAGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACTTGTTGATAAAGTGGCGCGCCAGGTGCGTTTACGGTTTATCCCCGCTGGCGCGGGGAACACCGGTCGTCAGGTACTAATCTAAAGGCTGTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGCGTCCGTCGTCGTTTAAAGCGTCAATGCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044314|2|2|768739-769987|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	TTTTGTGCCCTGGCGTTTTGCTGGCTCTCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCCGCTGTCAGCATTGCTGGCGCGTAATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTCCTCGCATTATTTCCCTTTCTTCTTCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCGCATCGCTCATGCCGATAATCGGGCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGCAGAGAATCGTTCGATTGCCCCTACAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAACGTTATCGATTACAACTGACAGGGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGAACGGCTCGGCGCTCTCATACCCCCAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTACCGAAGTAATGGTCGAAACACAGAATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCACCACTGAAAATCTGTACGAAAGCAATAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCTGTAATGCTCAAAGATATAGCCGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCAAAACAAACATCGGGGTACGCGTGGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAATTCATATTGATAAACACCGCGTTTGTAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACTACAATAGGTGGACACGCTACGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCGCGGACTCACGAGCAGGCCATCACAGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGTTGTCTGATGTGTCGCTGGCCTGGCGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTCATATTCGTTTCCTCGTGGCGCGATCT
AGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGAGACGTTCCACGCAATTAAACAAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGTTGATAAAGTGGCGCGCCAGGTGCGTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGTCGTCAGGTACTAATCTAAAGGCTGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGCGTCCGTCGTCGTTTAAAGCGTCAATGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044314|2|2|768739-769987|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	TTTTGTGCCCTGGCGTTTTGCTGGCTCTCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCCGCTGTCAGCATTGCTGGCGCGTAATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTCCTCGCATTATTTCCCTTTCTTCTTCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCGCATCGCTCATGCCGATAATCGGGCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGCAGAGAATCGTTCGATTGCCCCTACAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAACGTTATCGATTACAACTGACAGGGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGAACGGCTCGGCGCTCTCATACCCCCAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTACCGAAGTAATGGTCGAAACACAGAATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCACCACTGAAAATCTGTACGAAAGCAATAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCTGTAATGCTCAAAGATATAGCCGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCAAAACAAACATCGGGGTACGCGTGGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAATTCATATTGATAAACACCGCGTTTGTAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACTACAATAGGTGGACACGCTACGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCGCGGACTCACGAGCAGGCCATCACAGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGTTGTCTGATGTGTCGCTGGCCTGGCGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTCATATTCGTTTCCTCGTGGCGCGATCT
AGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGAGACGTTCCACGCAATTAAACAAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGTTGATAAAGTGGCGCGCCAGGTGCGTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGTCGTCAGGTACTAATCTAAAGGCTGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGCGTCCGTCGTCGTTTAAAGCGTCAATGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044314|2|3|768800-769987|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCCGCTGTCAGCATTGCTGGCGCGTAATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTCCTCGCATTATTTCCCTTTCTTCTTCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCGCATCGCTCATGCCGATAATCGGGCTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGGCAGAGAATCGTTCGATTGCCCCTACAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAACGTTATCGATTACAACTGACAGGGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGAACGGCTCGGCGCTCTCATACCCCCAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTACCGAAGTAATGGTCGAAACACAGAATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCACCACTGAAAATCTGTACGAAAGCAATAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCTGTAATGCTCAAAGATATAGCCGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCAAAACAAACATCGGGGTACGCGTGGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAATTCATATTGATAAACACCGCGTTTGTAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACTACAATAGGTGGACACGCTACGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCGCGGACTCACGAGCAGGCCATCACAGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGTTGTCTGATGTGTCGCTGGCCTGGCGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTCATATTCGTTTCCTCGTGGCGCGATCT
AGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGAGACGTTCCACGCAATTAAACAAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGTTGATAAAGTGGCGCGCCAGGTGCGTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGTCGTCAGGTACTAATCTAAAGGCTGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGCGTCCGTCGTCGTTTAAAGCGTCAATGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044314.1\|WP_000987944.1\|767140_767506_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP044314.1\|WP_000029315.1\|757002_757539_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP044314.1\|WP_096549051.1\|771170_771704_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP044314.1\|WP_000206429.1\|755932_756988_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP044314.1\|WP_000581937.1\|777524_777773_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP044314.1\|WP_000085053.1\|755175_755922_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP044314.1\|WP_000210878.1\|774462_776100_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP044314.1\|WP_001084076.1\|757535_759098_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP044314.1\|WP_001233938.1\|759195_761895_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP044314.1\|WP_001199982.1\|770326_770998_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP044314.1\|WP_000956458.1\|762088_762241_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP044314.1\|WP_000036723.1\|773076_774375_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP044314.1\|WP_000039843.1\|762505_763240_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP044314.1\|WP_001071648.1\|776327_777119_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP044314.1\|WP_000211936.1\|765025_766825_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP044314.1\|WP_000226815.1\|777850_780085_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP044314.1\|WP_000034929.1\|772658_773021_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044314.1\|WP_000793004.1\|771717_772623_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP044314.1\|WP_001290706.1\|763313_765026_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP044314.1\|WP_000254745.1\|777189_777525_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138

Protein	Function_ID	Function_description	E-value
NZ_CP044314.1\|WP_000987944.1\|767140_767506_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
NZ_CP044314.1\|WP_000029315.1\|757002_757539_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.47989e-27
NZ_CP044314.1\|WP_096549051.1\|771170_771704_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	4.91939e-62
NZ_CP044314.1\|WP_000206429.1\|755932_756988_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.2231e-155
NZ_CP044314.1\|WP_000581937.1\|777524_777773_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP044314.1\|WP_000085053.1\|755175_755922_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.27305e-47
NZ_CP044314.1\|WP_000210878.1\|774462_776100_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP044314.1\|WP_001084076.1\|757535_759098_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP044314.1\|WP_001233938.1\|759195_761895_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.43239e-178
NZ_CP044314.1\|WP_001199982.1\|770326_770998_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	9.11521e-156
NZ_CP044314.1\|WP_000956458.1\|762088_762241_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP044314.1\|WP_000039843.1\|762505_763240_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NZ_CP044314.1\|WP_001071648.1\|776327_777119_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP044314.1\|WP_000211936.1\|765025_766825_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP044314.1\|WP_000226815.1\|777850_780085_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP044314.1\|WP_000036723.1\|773076_774375_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP044314.1\|WP_000793004.1\|771717_772623_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.06471e-80
NZ_CP044314.1\|WP_001290706.1\|763313_765026_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP044314.1\|WP_000254745.1\|777189_777525_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74

>NZ_CP044314.1|WP_000987944.1|767140_767506_+|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP044314.1|WP_000211936.1|765025_766825_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLTAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLTGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGELRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NZ_CP044314.1|WP_001290706.1|763313_765026_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP044314.1|WP_000039843.1|762505_763240_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>NZ_CP044314.1|WP_000956458.1|762088_762241_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP044314.1|WP_001233938.1|759195_761895_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPTSSLSLFHSRFAFSDRQRIETKTLARFGKEGSSQRAGKALISTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPDEEWFGSAMRNSAYIYPDHGRIWLTQRVLRQQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYTTGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDNESCGYSATEGLIGKVG
>NZ_CP044314.1|WP_001084076.1|757535_759098_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGIRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQDDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHRFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADGLLSKWNKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP044314.1|WP_000029315.1|757002_757539_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDGHKATLRKWHEELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTCLSAVKTPDDLLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP044314.1|WP_000206429.1|755932_756988_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLSLLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP044314.1|WP_000085053.1|755175_755922_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQGGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDHFHDLKVSLPKLQDECWWEGEHDGLVVSKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP044314.1|WP_001199982.1|770326_770998_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGSASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP044314.1|WP_096549051.1|771170_771704_+|LemA-family-protein
MLRTFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSNHEKDVLEAVTLARSQANRASSDLQQTPGNEQKLQAWQQAQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNASAH
>NZ_CP044314.1|WP_000793004.1|771717_772623_+|YgcG-family-protein
MKNLILLLVLICSSAFAVQVPVPEFAKYINDLTGTLTREEVSTLTSQIKTLTQKSHAQLIVLVVETTGDETIEQYATRVFERWQPGHKNLDDGILLVVAWQDHTVHIEIGYGLEGILTDAQSGQIIRNSIIPAFKKGDLAVGLQQGIGDIETRLSENDLVNNTSPDHPLPFSGWWALLVWAIVLTFISARGYVKTLGVICFAAIILAFVLPIAGYSGSWGVLATLLCFATPFLVVAIAFTPFGRKVRDSMRSANRPSRYERSNSASRHSSSSSSSSSSSFNNDNFSGGGGSSGGGGASGRW
>NZ_CP044314.1|WP_000034929.1|772658_773021_+|hypothetical-protein
MSKILANHPRLSKFVFGLFGAAGMIWLNKAFQGDELFQLITSLLALDTFVYFCIYSLINPIPEANDFLWDYKVHQRKYSSNISHNDFVSNVRNSRKIVRILILVGITFINVIALLTKLKM
>NZ_CP044314.1|WP_000036723.1|773076_774375_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP044314.1|WP_000210878.1|774462_776100_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP044314.1|WP_001071648.1|776327_777119_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP044314.1|WP_000254745.1|777189_777525_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP044314.1|WP_000581937.1|777524_777773_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP044314.1|WP_000226815.1|777850_780085_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS

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Crispr_ID: NZ_CP044314_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044314_3

3271352-3271448

Orphan

Consensus_repeat	Method
GCTTGACGCGTCTTATCAGGCCTACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044314_3

>merge|NZ_CP044314|3|3271352-3271448|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAACCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGATGCTTGACGCATCTTATCAGGCCTACAA

>NZ_CP044314|3|3|3271352-3271448|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAA	CCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGAT
GCTTGACGCATCTTATCAGGCCTACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044314.1\|WP_000580875.1\|3266665_3268333_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP044314.1\|WP_000912345.1\|3274596_3275982_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP044314.1\|WP_000255997.1\|3273928_3274423_-\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP044314.1\|WP_000988366.1\|3278969_3279662_+\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP044314.1\|WP_001297445.1\|3269612_3270428_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP044314.1\|WP_001295318.1\|3272576_3273086_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP044314.1\|WP_000706355.1\|3261973_3263119_+\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NZ_CP044314.1\|WP_000729154.1\|3276860_3277727_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP044314.1\|WP_000703894.1\|3265300_3266350_-\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP044314.1\|WP_000540996.1\|3263247_3264033_-\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
NZ_CP044314.1\|WP_000006887.1\|3259232_3260594_+\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP044314.1\|WP_000815522.1\|3271512_3272580_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP044314.1\|WP_001369891.1\|3278207_3278750_+\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NZ_CP044314.1\|WP_001143552.1\|3276017_3276539_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP044314.1\|WP_001297442.1\|3260650_3261952_+\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP044314.1\|WP_000212252.1\|3273203_3273926_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP044314.1\|WP_000190288.1\|3276646_3276859_-\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP044314.1\|WP_000495365.1\|3268342_3269602_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NZ_CP044314.1\|WP_000855386.1\|3270424_3271318_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP044314.1\|WP_001297443.1\|3264043_3265279_-\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471

Protein	Function_ID	Function_description	E-value
NZ_CP044314.1\|WP_000580875.1\|3266665_3268333_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP044314.1\|WP_000912345.1\|3274596_3275982_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP044314.1\|WP_000255997.1\|3273928_3274423_-\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
NZ_CP044314.1\|WP_000988366.1\|3278969_3279662_+\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	5.84958e-149
NZ_CP044314.1\|WP_001297445.1\|3269612_3270428_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.68465e-37
NZ_CP044314.1\|WP_001295318.1\|3272576_3273086_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NZ_CP044314.1\|WP_000706355.1\|3261973_3263119_+\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NZ_CP044314.1\|WP_000729154.1\|3276860_3277727_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP044314.1\|WP_000703894.1\|3265300_3266350_-\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP044314.1\|WP_000540996.1\|3263247_3264033_-\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	4.3298e-152
NZ_CP044314.1\|WP_000006887.1\|3259232_3260594_+\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP044314.1\|WP_000815522.1\|3271512_3272580_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.21739e-179
NZ_CP044314.1\|WP_001369891.1\|3278207_3278750_+\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	2.45834e-91
NZ_CP044314.1\|WP_001143552.1\|3276017_3276539_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.06651e-30
NZ_CP044314.1\|WP_001297442.1\|3260650_3261952_+\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP044314.1\|WP_000212252.1\|3273203_3273926_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.37025e-165
NZ_CP044314.1\|WP_000190288.1\|3276646_3276859_-\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NZ_CP044314.1\|WP_000495365.1\|3268342_3269602_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.8369e-131
NZ_CP044314.1\|WP_000855386.1\|3270424_3271318_+\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP044314.1\|WP_001297443.1\|3264043_3265279_-\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0

>NZ_CP044314.1|WP_000855386.1|3270424_3271318_+|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEDTLAGEAGTCISL
>NZ_CP044314.1|WP_001297445.1|3269612_3270428_+|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLTAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP044314.1|WP_000495365.1|3268342_3269602_+|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP044314.1|WP_000580875.1|3266665_3268333_+|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQSLTQVRRWDSACQKLSDASLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAITPASSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIRPLSPATQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP044314.1|WP_000703894.1|3265300_3266350_-|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGAPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP044314.1|WP_001297443.1|3264043_3265279_-|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPTGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVILSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPHPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP044314.1|WP_000540996.1|3263247_3264033_-|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGHAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NZ_CP044314.1|WP_000706355.1|3261973_3263119_+|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNGIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQVLVANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NZ_CP044314.1|WP_001297442.1|3260650_3261952_+|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTVLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLGMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP044314.1|WP_000006887.1|3259232_3260594_+|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDALGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>NZ_CP044314.1|WP_000815522.1|3271512_3272580_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLADRSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRADETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP044314.1|WP_001295318.1|3272576_3273086_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP044314.1|WP_000212252.1|3273203_3273926_-|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP044314.1|WP_000255997.1|3273928_3274423_-|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP044314.1|WP_000912345.1|3274596_3275982_+|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP044314.1|WP_001143552.1|3276017_3276539_-|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMVLMGMLWWRRR
>NZ_CP044314.1|WP_000190288.1|3276646_3276859_-|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP044314.1|WP_000729154.1|3276860_3277727_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP044314.1|WP_001369891.1|3278207_3278750_+|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIKLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>NZ_CP044314.1|WP_000988366.1|3278969_3279662_+|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

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Crispr_ID: NZ_CP044314_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044314_4

3837088-3837179

Orphan

Consensus_repeat	Method
GCATCAGAAGCAGGTAAAAAAGGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044314_4

>merge|NZ_CP044314|4|3837088-3837179|CRISPRCasFinder
GCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGGAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGG

>NZ_CP044314|4|4|3837088-3837179|CRISPRCasFinder
GCATCAGAAGCAGGTAAAAAAGGTGG	ACAGCACAGCGGGGGGAATTTCAAGAATGACCCGCAGCGC
GCATCTGAAGCAGGTAAAAAAGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044314.1\|WP_001143120.1\|3835819_3836047_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP044314.1\|WP_001240629.1\|3837292_3838621_-\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP044314.1\|WP_001307099.1\|3839746_3840547_-\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP044314.1\|WP_000979516.1\|3847718_3847928_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044314.1\|WP_001398499.1\|3843701_3847664_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP044314.1\|WP_001297176.1\|3841644_3842736_-\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP044314.1\|WP_000191700.1\|3843023_3843662_+\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP044314.1\|WP_000209854.1\|3830815_3831415_+\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP044314.1\|WP_001001196.1\|3839146_3839737_-\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP044314.1\|WP_001062102.1\|3828272_3830819_+\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP044314.1\|WP_001028087.1\|3838641_3839136_-\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP044314.1\|WP_001230242.1\|3827100_3828273_+\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP044314.1\|WP_001307708.1\|3840952_3841645_-\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP044314.1\|WP_000024561.1\|3831507_3831813_-\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP044314.1\|WP_000420629.1\|3831812_3832733_-\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP044314.1\|WP_001126780.1\|3840554_3840941_-\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP044314.1\|WP_001151437.1\|3836067_3836664_-\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP044314.1\|WP_001120112.1\|3826278_3826971_-\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP044314.1\|WP_001044263.1\|3834540_3835782_+\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP044314.1\|WP_000535359.1\|3832992_3834252_+\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074

Protein	Function_ID	Function_description	E-value
NZ_CP044314.1\|WP_001143120.1\|3835819_3836047_-\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP044314.1\|WP_001240629.1\|3837292_3838621_-\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP044314.1\|WP_001307099.1\|3839746_3840547_-\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	1.96403e-140
NZ_CP044314.1\|WP_001398499.1\|3843701_3847664_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP044314.1\|WP_001297176.1\|3841644_3842736_-\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP044314.1\|WP_000191700.1\|3843023_3843662_+\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.12845e-153
NZ_CP044314.1\|WP_000209854.1\|3830815_3831415_+\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	1.10573e-83
NZ_CP044314.1\|WP_001001196.1\|3839146_3839737_-\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.45614e-128
NZ_CP044314.1\|WP_001062102.1\|3828272_3830819_+\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP044314.1\|WP_001028087.1\|3838641_3839136_-\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	1.53375e-103
NZ_CP044314.1\|WP_001230242.1\|3827100_3828273_+\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP044314.1\|WP_001307708.1\|3840952_3841645_-\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	5.84226e-169
NZ_CP044314.1\|WP_000024561.1\|3831507_3831813_-\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	2.74017e-64
NZ_CP044314.1\|WP_000420629.1\|3831812_3832733_-\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP044314.1\|WP_001126780.1\|3840554_3840941_-\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP044314.1\|WP_001151437.1\|3836067_3836664_-\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP044314.1\|WP_001120112.1\|3826278_3826971_-\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP044314.1\|WP_001044263.1\|3834540_3835782_+\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP044314.1\|WP_000535359.1\|3832992_3834252_+\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0

>NZ_CP044314.1|WP_001151437.1|3836067_3836664_-|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP044314.1|WP_001143120.1|3835819_3836047_-|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP044314.1|WP_001044263.1|3834540_3835782_+|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGIVLIASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP044314.1|WP_000535359.1|3832992_3834252_+|YccE-family-protein
MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEEDTPCLECESLEKEFEEMQNDNDLSLFMRTLRTNDTQIYSGVSGGITYTIQYVQNVDIVRVSLPGRGSESITDFKGYYWYGFMEYIENITACDDVFSEYCLDDENMSIQPEWINTPGISDLDTGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAILVLKEHEYSWALGSHKTQKQVYEEFIKIVDKQTIEALVDTAFNDLREDVKTLFGVNLQSDNKIQGQGGFLSWSFLSFKKEFIDSCLNDKKCILHLPEFIFNDNKVRLVLDTDPEQRVNEVKNFLTALSDSICSLFIVNSNMASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAIY
>NZ_CP044314.1|WP_000420629.1|3831812_3832733_-|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHSDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP044314.1|WP_000024561.1|3831507_3831813_-|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVTHP
>NZ_CP044314.1|WP_000209854.1|3830815_3831415_+|molecular-chaperone-TorD
MTTLTAQQIACIYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLAAAVNALENRIAALTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVARCHQHDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP044314.1|WP_001062102.1|3828272_3830819_+|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP044314.1|WP_001230242.1|3827100_3828273_+|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP044314.1|WP_001120112.1|3826278_3826971_-|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP044314.1|WP_001240629.1|3837292_3838621_-|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPYERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAPVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQEP
>NZ_CP044314.1|WP_001028087.1|3838641_3839136_-|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARGQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP044314.1|WP_001001196.1|3839146_3839737_-|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTVEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_CP044314.1|WP_001307099.1|3839746_3840547_-|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP044314.1|WP_001126780.1|3840554_3840941_-|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP044314.1|WP_001307708.1|3840952_3841645_-|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP044314.1|WP_001297176.1|3841644_3842736_-|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP044314.1|WP_000191700.1|3843023_3843662_+|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEIFFNQTVENVQRIIIEGIRPR
>NZ_CP044314.1|WP_001398499.1|3843701_3847664_-|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPVERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESAQAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP044314.1|WP_000979516.1|3847718_3847928_+|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044314_4	4.1\|3837114\|40\|NZ_CP044314\|CRISPRCasFinder	3837114-3837153	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP019314	Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence	71972-72003	6	0.812
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	66681-66712	7	0.781
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	NC_018516	Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence	207611-207642	7	0.781
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	NZ_CP053970	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence	222835-222866	7	0.781
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	NZ_CP053979	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence	131047-131078	7	0.781
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	NZ_CP013277	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence	349369-349400	7	0.781
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	NZ_CP039723	Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence	116770-116801	7	0.781
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	NZ_CP009348	Bacillus thuringiensis HD1002 plasmid 2, complete sequence	349371-349402	7	0.781
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	NZ_CP009334	Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence	141808-141839	7	0.781
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	NZ_CP045024	Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence	348980-349011	7	0.781
NZ_CP044314_2	2.14\|769561\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769561-769592	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	555773-555804	7	0.781
NZ_CP044314_2	2.4\|768951\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768951-768982	32	NZ_CP038236	Leisingera sp. NJS201 plasmid unnamed2, complete sequence	2813-2844	8	0.75
NZ_CP044314_2	2.4\|768951\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768951-768982	32	NZ_CP016463	Bosea sp. RAC05 plasmid pBSY19_1, complete sequence	353558-353589	8	0.75
NZ_CP044314_2	2.9\|769256\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769256-769287	32	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	254266-254297	8	0.75
NZ_CP044314_2	2.9\|769256\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769256-769287	32	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	402616-402647	8	0.75
NZ_CP044314_2	2.9\|769256\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769256-769287	32	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	15995-16026	8	0.75
NZ_CP044314_2	2.9\|769256\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769256-769287	32	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	160650-160681	8	0.75
NZ_CP044314_2	2.9\|769256\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769256-769287	32	NZ_CP011156	Bacillus cereus strain HN001 plasmid pRML01, complete sequence	58852-58883	8	0.75
NZ_CP044314_2	2.9\|769256\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769256-769287	32	NC_020385	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence	58853-58884	8	0.75
NZ_CP044314_2	2.9\|769256\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769256-769287	32	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	376005-376036	8	0.75
NZ_CP044314_2	2.9\|769256\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769256-769287	32	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	146145-146176	8	0.75
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	MN434096	Klebsiella phage JIPh_Kp127, complete genome	8414-8445	8	0.75
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	MK630230	Klebsiella phage Spivey, complete genome	1815-1846	8	0.75
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	MN434094	Klebsiella phage AmPh_EK80, complete genome	8419-8450	8	0.75
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	MG459987	Klebsiella phage Sugarland, complete genome	8643-8674	8	0.75
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	MT380195	Klebsiella phage KP_LZD_B01, complete genome	3481-3512	8	0.75
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	KX845404	Klebsiella phage vB_Kpn_IME260, complete genome	8404-8435	8	0.75
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	KX845404	Klebsiella phage vB_Kpn_IME260, complete genome	121617-121648	8	0.75
NZ_CP044314_1	1.6\|752994\|32\|NZ_CP044314\|CRISPRCasFinder,CRT	752994-753025	32	AP014927	Ralstonia phage RSF1 DNA, complete genome	171005-171036	9	0.719
NZ_CP044314_1	1.8\|753116\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753116-753147	32	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	115828-115859	9	0.719
NZ_CP044314_1	1.8\|753116\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753116-753147	32	KY579375	Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome	4523-4554	9	0.719
NZ_CP044314_1	1.8\|753116\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753116-753147	32	EU030939	Sulfolobus spindle-shaped virus 5, complete genome	8793-8824	9	0.719
NZ_CP044314_1	1.8\|753116\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753116-753147	32	JF412294	EBPR podovirus 1, partial sequence	3991-4022	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP020898	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence	46007-46038	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013555	Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence	125777-125808	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP020950	Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence	134655-134686	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013587	Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence	68724-68755	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	166140-166171	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013598	Rhizobium sp. N741 plasmid pRspN741c, complete sequence	103164-103195	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013578	Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013544	Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence	36015-36046	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013566	Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence	125777-125808	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013502	Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence	103085-103116	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013508	Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence	103164-103195	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013519	Rhizobium sp. N113 plasmid pRspN113b, complete sequence	103163-103194	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013572	Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013492	Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence	103161-103192	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013497	Rhizobium sp. N621 plasmid pRspN621b, complete sequence	103161-103192	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP013592	Rhizobium sp. N871 plasmid pRspN871b, complete sequence	103085-103116	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	CP007643	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence	92301-92332	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NC_010996	Rhizobium etli CIAT 652 plasmid pB, complete sequence	100863-100894	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	97248-97279	9	0.719
NZ_CP044314_2	2.1\|768768\|32\|NZ_CP044314\|CRISPRCasFinder,CRT	768768-768799	32	MK249151	Blackfly microvirus SF02 isolate 049, complete genome	1908-1939	9	0.719
NZ_CP044314_2	2.3\|768890\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768890-768921	32	NC_017140	Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence	5097-5128	9	0.719
NZ_CP044314_2	2.4\|768951\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768951-768982	32	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	1036450-1036481	9	0.719
NZ_CP044314_2	2.4\|768951\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768951-768982	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1555010-1555041	9	0.719
NZ_CP044314_2	2.4\|768951\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768951-768982	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	619383-619414	9	0.719
NZ_CP044314_2	2.7\|769134\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769134-769165	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5210759-5210790	9	0.719
NZ_CP044314_2	2.7\|769134\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769134-769165	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	191956-191987	9	0.719
NZ_CP044314_2	2.7\|769134\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769134-769165	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1498191-1498222	9	0.719
NZ_CP044314_2	2.10\|769317\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	769317-769348	32	HQ615693	Synechococcus phage S-CRM01, complete genome	2748-2779	9	0.719
NZ_CP044314_1	1.9\|753177\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	753177-753208	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1679246-1679277	10	0.688
NZ_CP044314_2	2.1\|768768\|32\|NZ_CP044314\|CRISPRCasFinder,CRT	768768-768799	32	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	450688-450719	10	0.688
NZ_CP044314_2	2.2\|768829\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768829-768860	32	NZ_CP039902	Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence	33041-33072	10	0.688
NZ_CP044314_2	2.2\|768829\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768829-768860	32	NZ_CP039893	Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence	217865-217896	10	0.688
NZ_CP044314_2	2.2\|768829\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768829-768860	32	NZ_KY000025	Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence	208000-208031	10	0.688
NZ_CP044314_2	2.2\|768829\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768829-768860	32	NZ_KY000029	Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence	208000-208031	10	0.688
NZ_CP044314_2	2.4\|768951\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768951-768982	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	823434-823465	10	0.688
NZ_CP044314_2	2.4\|768951\|32\|NZ_CP044314\|CRISPRCasFinder,CRT,PILER-CR	768951-768982	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	682589-682620	10	0.688

1. spacer 4.1|3837114|40|NZ_CP044314|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

acagcacagcggggggaatttcaagaatgacccgcagcgc	CRISPR spacer
acagcacagcgggggtaatttcaagaatgacccgcagcgc	Protospacer
*************** ************************

2. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019314 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence) position: , mismatch: 6, identity: 0.812

-gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
gagattgt-cgccctgttgggcgagaacggtgc	Protospacer
 .*.**** ******* *******.*******

3. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

-gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
gaggacgt-tgccctggtcggcgaagacggtgg	Protospacer
 .** .** .******** ******.*******

4. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NC_018516 (Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

5. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053970 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

6. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053979 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

7. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013277 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

8. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039723 (Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

9. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009348 (Bacillus thuringiensis HD1002 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

10. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009334 (Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

11. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045024 (Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
gatttctctaatgcacaaagatatagctataa	Protospacer
 ****** ****** ************.. *

12. spacer 2.14|769561|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

cgccgcggactcacgagcaggccatcacagac-	CRISPR spacer
aggcgcgaactgacgagcaggccatc-cacgcg	Protospacer
 * ****.*** ************** ** .*

13. spacer 2.4|768951|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038236 (Leisingera sp. NJS201 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
ccggaactgctgatgccgatgatcgggctcga	Protospacer
.* * *..*** ********.**********.

14. spacer 2.4|768951|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 8, identity: 0.75

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
cacgccgagctcatcccgataatcggggtcga	Protospacer
. ***   ****** ************ ***.

15. spacer 2.9|769256|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaagaaagcaaata	Protospacer
*.**  ** *********** ********  .

16. spacer 2.9|769256|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

17. spacer 2.9|769256|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

18. spacer 2.9|769256|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

19. spacer 2.9|769256|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011156 (Bacillus cereus strain HN001 plasmid pRML01, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

20. spacer 2.9|769256|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

21. spacer 2.9|769256|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

22. spacer 2.9|769256|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agcaccactgaaaatctgtacgaaagcaatag	CRISPR spacer
aacaagacagaaaatctgtaggaaagcaaata	Protospacer
*.**  ** *********** ********  .

23. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to MN434096 (Klebsiella phage JIPh_Kp127, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

24. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to MK630230 (Klebsiella phage Spivey, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

25. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to MN434094 (Klebsiella phage AmPh_EK80, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

26. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to MG459987 (Klebsiella phage Sugarland, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

27. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to MT380195 (Klebsiella phage KP_LZD_B01, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

28. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to KX845404 (Klebsiella phage vB_Kpn_IME260, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

29. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to KX845404 (Klebsiella phage vB_Kpn_IME260, complete genome) position: , mismatch: 8, identity: 0.75

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
agtcacggcaatgctcaaaggcatagccggat	Protospacer
 .*. * *.***********..**********

30. spacer 1.6|752994|32|NZ_CP044314|CRISPRCasFinder,CRT matches to AP014927 (Ralstonia phage RSF1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

atctccagcgccttttcgacgcaacggtgcgc	CRISPR spacer
cacgccagcgcctgttcgacgaaacgggtctg	Protospacer
  * ********* ******* *****  *

31. spacer 1.8|753116|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaaacgcttcctctacattctctttttc	Protospacer
  ..*   *****.****** ***********

32. spacer 1.8|753116|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to KY579375 (Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaatcgctttctctactttctctttgtc	Protospacer
  ..*  .************.******** **

33. spacer 1.8|753116|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to EU030939 (Sulfolobus spindle-shaped virus 5, complete genome) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaatcgctttctctactttctctttgtc	Protospacer
  ..*  .************.******** **

34. spacer 1.8|753116|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to JF412294 (EBPR podovirus 1, partial sequence) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
gccttcgctgctttctcggccttctctttttc	Protospacer
 *   . *.******** .*************

35. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020898 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

36. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013555 (Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

37. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020950 (Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

38. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013587 (Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

39. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
aaggtcaccgccctgatcggcgaaaacggtgc	Protospacer
..* *   *******.* *************

40. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013598 (Rhizobium sp. N741 plasmid pRspN741c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

41. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013578 (Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

42. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013544 (Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

43. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013566 (Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

44. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013502 (Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

45. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013508 (Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

46. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013519 (Rhizobium sp. N113 plasmid pRspN113b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

47. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013572 (Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

48. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013492 (Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

49. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013497 (Rhizobium sp. N621 plasmid pRspN621b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

50. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013592 (Rhizobium sp. N871 plasmid pRspN871b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

51. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to CP007643 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

52. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NC_010996 (Rhizobium etli CIAT 652 plasmid pB, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

53. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

54. spacer 2.1|768768|32|NZ_CP044314|CRISPRCasFinder,CRT matches to MK249151 (Blackfly microvirus SF02 isolate 049, complete genome) position: , mismatch: 9, identity: 0.719

ttttgtgccctggcgttttgctggctctcgcg	CRISPR spacer
atttgttccctggcgttttgttgggacatggc	Protospacer
 ***** *************.***  * .*

55. spacer 2.3|768890|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NC_017140 (Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence) position: , mismatch: 9, identity: 0.719

cgttcctcgcattatttccctttcttcttcga	CRISPR spacer
ccgcgctcgctttgtttccctttcttctccat	Protospacer
*  . ***** **.**************.*.

56. spacer 2.4|768951|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 9, identity: 0.719

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
tccgtatcgctcatgtcgataatcctaattca	Protospacer
****.**********.********  . *. .

57. spacer 2.4|768951|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
agctcgaagcccatgccgatgatcgggctcgc	Protospacer
  * *.  **.*********.**********

58. spacer 2.4|768951|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 9, identity: 0.719

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
agctcgaagcccatgccgatgatcgggctcgc	Protospacer
  * *.  **.*********.**********

59. spacer 2.7|769134|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctcggcgctctcatacccccaaat	CRISPR spacer
tcgaacggctcggcgcccgcataccgttcgac	Protospacer
.***************.* ****** .. .*.

60. spacer 2.7|769134|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctcggcgctctcatacccccaaat	CRISPR spacer
acgaacgactcggcgcgctcatacgaacgttt	Protospacer
 ******.******** *******   *.  *

61. spacer 2.7|769134|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctcggcgctctcatacccccaaat	CRISPR spacer
acgaacgactcggcgcgctcatacgaacgttt	Protospacer
 ******.******** *******   *.  *

62. spacer 2.10|769317|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to HQ615693 (Synechococcus phage S-CRM01, complete genome) position: , mismatch: 9, identity: 0.719

tatttctgtaatgctcaaagatatagccggat	CRISPR spacer
aatttctgtattgctcaatgatatattgaggc	Protospacer
 ********* ******* ****** . .*..

63. spacer 1.9|753177|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
ttccctgccgccctggttggcgaatacggtgg	Protospacer
   ..   ********* ****** *******

64. spacer 2.1|768768|32|NZ_CP044314|CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttttgtgccctggcgttttgctggctctcgcg	CRISPR spacer
accggtgccctggcgctttgcaggctccttcc	Protospacer
 .. ***********.***** *****.. *

65. spacer 2.2|768829|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039902 (Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

66. spacer 2.2|768829|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039893 (Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

67. spacer 2.2|768829|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000025 (Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

68. spacer 2.2|768829|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000029 (Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

69. spacer 2.4|768951|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
tacgcatcgcccatgccgatgatcgccgcaac	Protospacer
* ********.*********.****   . .

70. spacer 2.4|768951|32|NZ_CP044314|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 10, identity: 0.688

tccgcatcgctcatgccgataatcgggctcgg	CRISPR spacer
tacgcatcgcccatgccgatgatcgccgcaac	Protospacer
* ********.*********.****   . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

257 : 34099

Escherichia_phage(56.1%)

holin,plate,tail,capsid,portal,lysis,integrase,terminase,head

attL 11706:11720|attR 33803:33817

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064579175.1\|257_1421_-	phage late control D family protein	A0A0F7LDR0	Escherichia_phage	4.5e-204	99.0
WP_001540336.1\|1420_1900_-\|tail	phage tail protein	Q858U6	Yersinia_virus	2.3e-85	100.0
WP_096843456.1\|1914_4362_-\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	0.0e+00	95.8
WP_000785970.1\|4354_4474_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001031303.1\|4506_4782_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_064550152.1\|4838_5357_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	4.2e-93	99.4
WP_069907206.1\|5369_6560_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	4.0e-224	99.2
WP_021529515.1\|6846_8073_-	DUF4263 domain-containing protein	Q858S8	Enterobacteria_phage	2.7e-183	100.0
WP_064579168.1\|8363_8891_-\|tail	tail fiber assembly protein	Q7Y4D3	Escherichia_virus	3.1e-91	95.4
WP_064579169.1\|8894_10868_-\|tail	phage tail protein	A0A0F7LDR4	Escherichia_phage	1.3e-166	58.5
WP_001285325.1\|10878_11409_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	2.3e-102	100.0
WP_064579170.1\|11401_12310_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	3.4e-162	99.7
11706:11720	attL	NA	NA	NA	NA
WP_000127163.1\|12314_12662_-\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
WP_001093716.1\|12658_13294_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	2.0e-113	99.1
WP_000255496.1\|13377_14163_+	hypothetical protein	NA	NA	NA	NA
WP_064579171.1\|14234_14687_-	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	6.9e-76	98.7
WP_000917146.1\|14679_15147_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	2.5e-81	98.1
WP_001300730.1\|15109_15283_-	hypothetical protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
WP_033811832.1\|15254_15680_-\|lysis	LysB family phage lysis regulatory protein	A0A0F7L9Y0	Escherichia_phage	8.0e-66	95.7
WP_001712252.1\|15667_16093_-	hypothetical protein	A0A0F7LBP4	Escherichia_phage	8.6e-60	96.5
WP_001144101.1\|16107_16605_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_064579185.1\|16604_16886_-\|holin	holin	A0A0F7LA12	Escherichia_phage	4.8e-43	98.9
WP_000846409.1\|16889_17093_-\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	3.0e-31	100.0
WP_000988646.1\|17092_17602_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.2e-89	99.4
WP_064579217.1\|17701_18445_-\|terminase	terminase endonuclease subunit	A0A0F7LBP7	Escherichia_phage	1.6e-122	97.2
WP_001248553.1\|18448_19522_-\|capsid	phage major capsid protein, P2 family	Q94MH9	Enterobacteria_phage	6.7e-202	99.4
WP_001085975.1\|19580_20435_-\|capsid	GPO family capsid scaffolding protein	Q94MI4	Enterobacteria_phage	3.5e-137	98.6
WP_000156872.1\|20608_22381_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	100.0
WP_096557573.1\|22380_23415_+\|portal	phage portal protein	Q7Y4E8	Escherichia_virus	6.0e-200	99.4
WP_071987867.1\|23782_24937_-	DNA cytosine methyltransferase	Q83VT0	Escherichia_phage	3.2e-210	99.4
WP_071526056.1\|24957_25227_+	helix-turn-helix transcriptional regulator	Q83VS9	Escherichia_phage	3.6e-40	100.0
WP_000866882.1\|25204_26260_+	restriction endonuclease, SacI family	Q83VS8	Escherichia_phage	2.2e-197	100.0
WP_050877419.1\|26353_28624_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	97.2
WP_000027664.1\|28613_28889_-	hypothetical protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
WP_001113264.1\|28885_29110_-	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_001277897.1\|29109_29412_-	hypothetical protein	A0A0F7LCL4	Escherichia_phage	8.5e-46	98.0
WP_000557705.1\|29411_29636_-	DUF2732 family protein	S4TP68	Salmonella_phage	1.4e-32	98.6
WP_000217670.1\|29699_30200_-	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_001081582.1\|30377_30653_-	hypothetical protein	Q1JS60	Enterobacteria_phage	1.3e-48	100.0
WP_000020919.1\|30774_31074_+	helix-turn-helix domain-containing protein	Q1JS61	Enterobacteria_phage	2.4e-48	100.0
WP_000985261.1\|31189_32203_+\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	4.1e-193	99.1
WP_000716757.1\|32467_32785_-	hypothetical protein	NA	NA	NA	NA
WP_000807362.1\|33199_34099_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
33803:33817	attR	NA	NA	NA	NA

DBSCAN-SWA_2

57525 : 132012

Enterobacteria_phage(41.18%)

holin,tail,tRNA,capsid,portal,lysis,protease,integrase,terminase,head

attL 79072:79092|attR 129518:129538

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295427.1\|57525_59559_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
WP_001215613.1\|59699_63494_+	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_000356741.1\|63503_67136_+	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_000636923.1\|67196_67514_+	hypothetical protein	NA	NA	NA	NA
WP_000074859.1\|68753_69842_+	MoxR family ATPase	NA	NA	NA	NA
WP_064579208.1\|69852_72132_+	hypothetical protein	NA	NA	NA	NA
WP_001292774.1\|72124_73261_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
WP_064579207.1\|73257_75258_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.0
WP_001295429.1\|75382_75844_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001295430.1\|75884_76355_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|76401_77121_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|77117_78803_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
79072:79092	attL	NA	NA	NA	NA
WP_001217533.1\|79317_79566_+	DinI-like family protein	S5MQI1	Escherichia_phage	1.0e-33	86.6
WP_064579209.1\|79835_80510_-	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	5.6e-114	89.7
WP_000438829.1\|80521_80734_-	hypothetical protein	NA	NA	NA	NA
WP_064579206.1\|80743_82456_-\|tail	phage tail protein	S5MDN9	Escherichia_phage	5.9e-67	51.7
WP_000078853.1\|82600_82741_-	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.9e-17	95.7
WP_151061602.1\|82939_86626_-	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	88.1
WP_074403980.1\|86618_86828_-	hypothetical protein	NA	NA	NA	NA
WP_074403982.1\|87547_88180_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	8.7e-101	91.0
WP_106901625.1\|88125_88869_-\|tail	phage tail protein	S5MQI8	Escherichia_phage	8.3e-151	99.2
WP_001365876.1\|88879_89578_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	1.4e-131	98.3
WP_000343411.1\|89577_89919_-\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	6.9e-52	82.3
WP_096549210.1\|89911_93154_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	89.2
WP_122993267.1\|93202_93412_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	98.6
WP_000710936.1\|93507_93882_-\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	3.9e-64	98.4
WP_001275414.1\|93896_94613_-\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	1.5e-125	98.7
WP_000133383.1\|94679_95024_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	4.2e-57	99.1
WP_000573396.1\|95020_95467_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	9.9e-75	98.6
WP_001007902.1\|95463_95814_-\|head	phage head closure protein	A0A0P0ZCU6	Stx2-converting_phage	2.0e-59	99.1
WP_000126028.1\|95824_96151_-\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	3.9e-52	97.2
WP_001365916.1\|96147_98733_-\|portal	phage portal protein	B6DZA1	Enterobacteria_phage	0.0e+00	96.3
WP_001063099.1\|98678_98900_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000172990.1\|98944_100882_-\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.7
WP_001398587.1\|100945_102607_-\|terminase	terminase large subunit	A0A0P0ZEI4	Stx2-converting_phage	0.0e+00	99.6
WP_000958387.1\|102603_103167_-\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
WP_000829192.1\|103455_103821_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.6e-62	96.7
WP_000095744.1\|103862_104063_+	DUF3950 domain-containing protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_000828070.1\|104194_104521_-	TonB family protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
WP_044696931.1\|104456_104708_-	hypothetical protein	H6WZK4	Escherichia_phage	2.2e-31	98.6
WP_042187665.1\|104629_104830_-	hypothetical protein	Q9T1L1	Enterobacteria_phage	1.1e-09	76.9
WP_000877795.1\|104857_105403_-	hypothetical protein	A0A0P0ZFJ1	Escherichia_phage	7.4e-64	68.6
WP_074403983.1\|105583_106051_-\|lysis	lysis protein	A0A0H4IT10	Shigella_phage	4.2e-68	88.4
WP_001280928.1\|106053_106185_-	hypothetical protein	A0A0P0ZG36	Escherichia_phage	4.5e-12	95.3
WP_000661712.1\|106279_106975_-	phage antirepressor protein	Q5MBW0	Stx1-converting_phage	2.8e-124	99.1
WP_001092873.1\|107248_107782_-	lysozyme	Q6H9V6	Enterobacteria_phage	1.3e-94	92.1
WP_001041949.1\|108293_109085_-	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	5.7e-33	85.5
WP_000284490.1\|109088_109304_-\|holin	holin	Q9ZWW2	Enterobacteria_phage	2.0e-33	98.6
WP_001290230.1\|109381_109627_-	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000143458.1\|109667_109847_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_064579199.1\|109984_111922_-	SASA family carbohydrate esterase	S5MDQ7	Escherichia_phage	0.0e+00	93.8
WP_000738072.1\|112423_112693_-	Shiga toxin Stx2a subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
WP_000649751.1\|112704_113664_-	Shiga toxin Stx2c subunit A	Q5TJL6	Enterobacteria_phage	4.3e-176	100.0
WP_064579085.1\|114046_115105_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	1.3e-205	98.3
WP_000917756.1\|115255_115453_-	hypothetical protein	S5MQK8	Escherichia_phage	6.8e-28	98.5
WP_001204809.1\|115668_116049_-	antitermination protein Q	S5M7R9	Escherichia_phage	1.4e-66	99.2
WP_001202275.1\|116067_117057_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-194	98.8
WP_001065352.1\|117108_117366_-	hypothetical protein	Q8W639	Enterobacteria_phage	1.2e-21	71.1
WP_040077785.1\|117362_118763_-	replicative DNA helicase	Q8W640	Enterobacteria_phage	4.9e-245	92.4
WP_000988196.1\|118759_119638_-	ATPase AAA	Q8W641	Enterobacteria_phage	2.0e-140	96.0
WP_039259893.1\|119648_120641_-	hypothetical protein	Q8W642	Enterobacteria_phage	1.3e-53	90.1
WP_021293441.1\|120637_120964_-	hypothetical protein	NA	NA	NA	NA
WP_000618002.1\|120960_121185_-	hypothetical protein	A0A1C9II64	Salmonella_phage	9.8e-15	52.1
WP_028125921.1\|121181_121376_-	hypothetical protein	NA	NA	NA	NA
WP_096549041.1\|121372_122104_-	hypothetical protein	Q8W643	Enterobacteria_phage	1.8e-81	72.0
WP_074403962.1\|122036_122213_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	3.1e-24	85.7
WP_064579084.1\|122232_122940_-	DNA-binding protein	Q8W645	Enterobacteria_phage	3.6e-95	76.1
WP_000944728.1\|123021_123255_-	Cro/Cl family transcriptional regulator	A0A1B5FPK9	Escherichia_phage	1.2e-28	77.0
WP_000800142.1\|123411_124101_+	LexA family transcriptional regulator	A0A1B5FPF4	Escherichia_phage	6.8e-115	87.8
WP_000387834.1\|124248_124941_+	helix-turn-helix transcriptional regulator	A0A1B5FPB8	Escherichia_phage	1.0e-38	63.6
WP_000147360.1\|124946_125147_+	hypothetical protein	NA	NA	NA	NA
WP_000553978.1\|125344_125527_+	hypothetical protein	Q8W652	Enterobacteria_phage	1.1e-08	50.9
WP_032253186.1\|125532_126105_+	hypothetical protein	Q8W653	Enterobacteria_phage	1.0e-76	70.7
WP_000780790.1\|126289_126478_+	hypothetical protein	NA	NA	NA	NA
WP_052891987.1\|126474_127302_+\|protease	serine protease	Q8W654	Enterobacteria_phage	4.5e-129	97.1
WP_001447615.1\|127342_127714_+	hypothetical protein	Q8W655	Enterobacteria_phage	1.4e-61	95.9
WP_001193437.1\|127905_128160_+	excisionase	Q859D3	Escherichia_coli_phage	3.0e-44	100.0
WP_000063636.1\|128193_129480_+\|integrase	site-specific integrase	Q6HA01	Enterobacteria_phage	1.2e-253	100.0
WP_042101647.1\|129515_130202_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	3.8e-102	99.5
129518:129538	attR	NA	NA	NA	NA
WP_001216963.1\|130261_130369_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|130349_131081_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569325.1\|131085_132012_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.8e-23	30.8

DBSCAN-SWA_3

729285 : 736425

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272924.1\|729285_731847_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
WP_001141340.1\|731952_732609_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	8.0e-49	46.3
WP_001369870.1\|732659_733427_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	56.3
WP_000847985.1\|733622_734531_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590384.1\|734527_735790_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-135	61.4
WP_001278994.1\|735786_736425_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_4

1816873 : 1827495

Enterobacteria_phage(88.89%)

integrase

attL 1816691:1816713|attR 1827980:1828002

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1816691:1816713	attL	NA	NA	NA	NA
WP_001218979.1\|1816873_1818043_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.7e-198	88.1
WP_064579111.1\|1818062_1819922_+	helicase	A0A097BY72	Enterococcus_phage	8.2e-14	22.1
WP_000186475.1\|1819918_1820344_+	hypothetical protein	NA	NA	NA	NA
WP_000446137.1\|1820671_1821244_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.8e-95	96.8
WP_000638634.1\|1821317_1821818_-	transactivation protein	NA	NA	NA	NA
WP_001283021.1\|1821814_1822549_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	2.3e-129	98.8
WP_001149160.1\|1823100_1823367_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_064579108.1\|1823363_1823963_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.1e-49	80.3
WP_001244665.1\|1823955_1824243_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
WP_000459318.1\|1824235_1824691_+	hypothetical protein	Q7M298	Enterobacteria_phage	4.7e-64	98.2
WP_000856729.1\|1824826_1825147_+	hypothetical protein	NA	NA	NA	NA
WP_106901637.1\|1825161_1827495_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	98.5
1827980:1828002	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2075391 : 2151665

Escherichia_phage(47.83%)

holin,plate,tRNA,capsid,portal,tail,lysis,protease,integrase,terminase,head

attL 2105998:2106044|attR 2135720:2135766

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000560983.1\|2075391_2075829_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_000080791.1\|2075825_2076815_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001162704.1\|2076878_2077787_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000897305.1\|2078015_2078327_+	hypothetical protein	NA	NA	NA	NA
WP_000356397.1\|2078327_2078618_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001295676.1\|2079222_2079441_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_001087409.1\|2079659_2079902_+	hypothetical protein	NA	NA	NA	NA
WP_000027706.1\|2080231_2081161_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_000829013.1\|2081157_2081793_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_000331377.1\|2081789_2082692_-	formate dehydrogenase subunit beta	NA	NA	NA	NA
WP_011310337.1\|2082704_2085755_-	formate dehydrogenase-N subunit alpha	A0A077SK27	Escherichia_phage	1.1e-07	23.8
WP_096549192.1\|2085948_2086782_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_001317404.1\|2086934_2087975_+	DUF3829 domain-containing protein	NA	NA	NA	NA
WP_033811809.1\|2088024_2089773_-	HTH domain-containing protein	NA	NA	NA	NA
WP_001019466.1\|2089772_2090843_-	aminopeptidase	NA	NA	NA	NA
WP_000446005.1\|2090832_2092284_-	PTS fructose-like transporter subunit IIBC	NA	NA	NA	NA
WP_000729591.1\|2092294_2092741_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA
WP_000619503.1\|2093053_2093368_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_001179766.1\|2093377_2094202_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_096549191.1\|2094376_2095636_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_000144056.1\|2095632_2097102_-	rhamnulokinase	NA	NA	NA	NA
WP_000217137.1\|2097389_2098226_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_001297062.1\|2098209_2099148_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_000063527.1\|2099144_2100179_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_001297064.1\|2100463_2101084_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	4.9e-64	59.8
WP_001166063.1\|2101343_2102327_+	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA
WP_001270260.1\|2102475_2103150_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_000580417.1\|2103255_2104629_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	3.8e-16	25.9
WP_001033722.1\|2104625_2105324_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_001223800.1\|2105473_2105974_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
2105998:2106044	attL	NA	NA	NA	NA
WP_000023384.1\|2106159_2107140_-\|integrase	tyrosine-type recombinase/integrase	U5N0A8	Enterobacteria_phage	4.7e-186	100.0
WP_001192857.1\|2107209_2107503_-	helix-turn-helix domain-containing protein	Q1JS45	Enterobacteria_phage	1.0e-48	100.0
WP_000453534.1\|2107655_2107928_+	hypothetical protein	Q1JS44	Enterobacteria_phage	1.5e-46	100.0
WP_000217670.1\|2108097_2108598_+	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_000557703.1\|2108661_2108886_+	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_001277961.1\|2108885_2109188_+	hypothetical protein	Q7Y4C1	Escherichia_virus	3.8e-46	99.0
WP_001113264.1\|2109187_2109412_+	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_000027664.1\|2109408_2109684_+	hypothetical protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
WP_042973449.1\|2109673_2111971_+	replication endonuclease	U5N0W3	Enterobacteria_phage	0.0e+00	99.5
WP_000825552.1\|2112046_2112592_-	cytolethal distending toxin type V subunit CdtC	G1BEM5	Escherichia_phage	4.9e-100	100.0
WP_000759934.1\|2112606_2113416_-	cytolethal distending toxin type III/V nuclease subunit CdtB	G1BEM4	Escherichia_phage	4.0e-151	100.0
WP_001284793.1\|2113412_2114189_-	cytolethal distending toxin type V subunit CdtA	G1BEM3	Escherichia_phage	7.9e-136	100.0
WP_050867561.1\|2114975_2116010_-\|portal	phage portal protein	Q7Y4E8	Escherichia_virus	9.3e-201	99.7
WP_000156872.1\|2116009_2117782_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	100.0
WP_001085972.1\|2117955_2118810_+\|capsid	GPO family capsid scaffolding protein	Q94MI4	Enterobacteria_phage	1.3e-139	100.0
WP_001248553.1\|2118868_2119942_+\|capsid	phage major capsid protein, P2 family	Q94MH9	Enterobacteria_phage	6.7e-202	99.4
WP_064579217.1\|2119945_2120689_+\|terminase	terminase endonuclease subunit	A0A0F7LBP7	Escherichia_phage	1.6e-122	97.2
WP_000988646.1\|2120788_2121298_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.2e-89	99.4
WP_000846409.1\|2121297_2121501_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	3.0e-31	100.0
WP_064579185.1\|2121504_2121786_+\|holin	holin	A0A0F7LA12	Escherichia_phage	4.8e-43	98.9
WP_001144101.1\|2121785_2122283_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_001712252.1\|2122297_2122723_+	hypothetical protein	A0A0F7LBP4	Escherichia_phage	8.6e-60	96.5
WP_033811832.1\|2122710_2123136_+\|lysis	LysB family phage lysis regulatory protein	A0A0F7L9Y0	Escherichia_phage	8.0e-66	95.7
WP_001300730.1\|2123107_2123281_+	hypothetical protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
WP_000917190.1\|2123243_2123711_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	9.7e-81	97.4
WP_001001780.1\|2123703_2124156_+	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	6.3e-77	100.0
WP_050877437.1\|2124222_2124858_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	2.9e-112	99.1
WP_000127163.1\|2124854_2125202_+\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
WP_001121496.1\|2125206_2126115_+\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	2.8e-161	99.3
WP_001285340.1\|2126107_2126719_+\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.7e-117	100.0
WP_047087886.1\|2126715_2128446_+\|tail	phage tail fiber protein	A0A0M3ULH6	Salmonella_phage	3.1e-84	64.3
WP_047087885.1\|2128445_2128883_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	7.3e-22	42.0
WP_069907206.1\|2129006_2130197_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	4.0e-224	99.2
WP_064550152.1\|2130209_2130728_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	4.2e-93	99.4
WP_001031303.1\|2130784_2131060_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_000785970.1\|2131092_2131212_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_064579114.1\|2131204_2133652_+\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	95.3
WP_064550148.1\|2133666_2134146_+\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	3.3e-84	98.7
WP_151061603.1\|2134145_2135309_+	phage late control D family protein	U5N3V4	Enterobacteria_phage	3.5e-204	98.4
WP_000468308.1\|2135389_2135608_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_001076742.1\|2135844_2136747_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
2135720:2135766	attR	NA	NA	NA	NA
WP_000591795.1\|2136927_2137890_+	6-phosphofructokinase	NA	NA	NA	NA
WP_001045689.1\|2138209_2139199_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000708998.1\|2139305_2140061_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_001216325.1\|2140115_2140883_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_000802226.1\|2140990_2141590_-	YiiQ family protein	NA	NA	NA	NA
WP_000155272.1\|2141690_2142131_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000655986.1\|2142342_2142642_+	DUF406 domain-containing protein	NA	NA	NA	NA
WP_000323556.1\|2142668_2143097_+	universal stress protein UspD	NA	NA	NA	NA
WP_000796320.1\|2143101_2143848_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_001250644.1\|2143944_2144955_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000136788.1\|2145090_2146599_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_000084268.1\|2146621_2147467_-	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
WP_001296623.1\|2147892_2148138_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000872908.1\|2148222_2148708_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_001307494.1\|2148800_2149727_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_001293343.1\|2149793_2151125_-	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
WP_000208242.1\|2151134_2151665_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_6

2906997 : 3005087

109

Shigella_phage(41.51%)

plate,tail,protease,transposase,integrase,head

attL 2920553:2920569|attR 2998473:2998489

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000077537.1\|2906997_2907528_-	hypothetical protein	A0A2D1GNR8	Pseudomonas_phage	3.7e-36	62.4
WP_001310454.1\|2907718_2907967_+	transcriptional regulator	A0A2D1GNH1	Pseudomonas_phage	1.3e-28	73.2
WP_096549161.1\|2907968_2910059_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2D1GNK9	Pseudomonas_phage	1.2e-165	45.4
WP_000129790.1\|2910135_2911068_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	1.2e-69	48.3
WP_000257925.1\|2911070_2911292_+	hypothetical protein	NA	NA	NA	NA
WP_096549162.1\|2911304_2911724_+	hypothetical protein	NA	NA	NA	NA
WP_033805330.1\|2911710_2911941_+	hypothetical protein	NA	NA	NA	NA
WP_064768961.1\|2912015_2912288_+	hypothetical protein	NA	NA	NA	NA
WP_095585931.1\|2912292_2912586_+	hypothetical protein	NA	NA	NA	NA
WP_096549163.1\|2912597_2913128_+	host-nuclease inhibitor protein Gam	C9DGL8	Escherichia_phage	9.4e-48	56.0
WP_001536807.1\|2913212_2913791_+	hypothetical protein	NA	NA	NA	NA
WP_096549164.1\|2913794_2914328_+	hypothetical protein	A0A0C4UQU2	Shigella_phage	2.2e-65	67.2
WP_000465562.1\|2914327_2914843_+	hypothetical protein	C9DGM0	Escherichia_phage	1.2e-47	55.4
WP_080029476.1\|2914846_2915398_+	AsnC family protein	NA	NA	NA	NA
WP_000621195.1\|2915394_2915580_+	hypothetical protein	NA	NA	NA	NA
WP_000021235.1\|2915618_2915951_+	hypothetical protein	NA	NA	NA	NA
WP_001086887.1\|2915943_2916141_+	hypothetical protein	A0A291AXE7	Shigella_phage	1.2e-05	34.5
WP_000370523.1\|2916130_2916427_+	hypothetical protein	NA	NA	NA	NA
WP_001214359.1\|2916423_2916933_+	DUF1018 domain-containing protein	A0A0C4UQU3	Shigella_phage	2.0e-26	41.9
WP_000852377.1\|2917002_2917428_+	transcriptional regulator	NA	NA	NA	NA
WP_001125304.1\|2917499_2918000_+	lysozyme	B6SD29	Bacteriophage	3.0e-27	42.6
WP_115801859.1\|2918034_2918463_+	endopeptidase	NA	NA	NA	NA
WP_137446104.1\|2918446_2918665_+	hypothetical protein	NA	NA	NA	NA
WP_000342747.1\|2918674_2918902_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_000270159.1\|2918882_2919191_+	DUF2730 family protein	NA	NA	NA	NA
WP_001279082.1\|2919187_2919478_+	hypothetical protein	A0A0C4UR00	Shigella_phage	4.7e-25	63.2
WP_000360581.1\|2919480_2920062_+	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	1.9e-49	57.0
WP_001057672.1\|2920061_2921726_+	hypothetical protein	A0A0C4UR29	Shigella_phage	1.4e-230	73.2
2920553:2920569	attL	NA	NA	NA	NA
WP_096549181.1\|2921725_2923315_+	DUF935 domain-containing protein	A0A0C4UQR8	Shigella_phage	5.0e-169	57.7
WP_095586074.1\|2923298_2924630_+\|head	phage head morphogenesis protein	A0A0C4UQY9	Shigella_phage	5.5e-153	59.0
WP_095586075.1\|2924751_2925225_+	phage virion morphogenesis protein	A0A0C4UR01	Shigella_phage	2.7e-38	54.6
WP_000850812.1\|2925401_2926526_+\|protease	protease	A0A0C4UQU6	Shigella_phage	7.5e-79	47.6
WP_096549165.1\|2926525_2927473_+\|head	head protein	A0A0C4UQR9	Shigella_phage	4.3e-120	65.9
WP_096549166.1\|2927516_2927912_+	hypothetical protein	NA	NA	NA	NA
WP_096549167.1\|2927908_2928328_+	DUF1320 domain-containing protein	A0A0C4UR02	Shigella_phage	1.6e-34	53.6
WP_096549168.1\|2928324_2928888_+	DUF1834 family protein	A0A0C4UQU7	Shigella_phage	2.8e-42	47.7
WP_096549169.1\|2928891_2929122_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_096549170.1\|2929121_2930603_+\|tail	phage tail protein	A0A0C4UQS0	Shigella_phage	8.5e-131	51.1
WP_000015475.1\|2930611_2930977_+\|tail	phage tail protein	NA	NA	NA	NA
WP_032307022.1\|2930991_2931468_+	hypothetical protein	A0A0C4UR03	Shigella_phage	2.3e-21	49.2
WP_001115266.1\|2931409_2931592_+	hypothetical protein	C9DGQ0	Escherichia_phage	7.2e-08	54.8
WP_096549171.1\|2931595_2933650_+	tape measure protein	A0A0C4UQU8	Shigella_phage	2.5e-72	36.3
WP_096549172.1\|2933636_2934995_+	multidrug DMT transporter permease	A0A0C4UR32	Shigella_phage	3.2e-52	31.6
WP_096549173.1\|2934978_2936106_+\|tail	phage tail protein	C9DGQ3	Escherichia_phage	9.8e-95	47.7
WP_072098124.1\|2936095_2936710_+\|plate	phage baseplate assembly protein V	A0A0C4UQZ3	Shigella_phage	8.0e-51	49.7
WP_000763304.1\|2936702_2937140_+	hypothetical protein	A0A0C4UR04	Shigella_phage	1.6e-40	57.6
WP_140436573.1\|2937139_2938222_+\|plate	baseplate J/gp47 family protein	A0A0C4UQU9	Shigella_phage	8.2e-99	53.2
WP_096096954.1\|2938212_2938770_+	YmfQ family protein	C9DGQ7	Escherichia_phage	2.4e-41	46.4
WP_096549182.1\|2938805_2939756_+\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	7.4e-27	81.7
WP_096549175.1\|2939755_2940478_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	9.2e-38	59.5
WP_096549176.1\|2940601_2942644_+	sialate O-acetylesterase	S5MDQ7	Escherichia_phage	5.6e-282	82.0
WP_032307036.1\|2942793_2942976_+	DUF1378 family protein	S5MBZ5	Escherichia_phage	1.3e-09	54.4
WP_001114107.1\|2943011_2943257_+	DUF826 domain-containing protein	NA	NA	NA	NA
WP_001310452.1\|2943873_2944074_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_096549177.1\|2944027_2944765_+	protein mom	A0A0C4UQZ7	Shigella_phage	5.8e-104	79.0
WP_096549178.1\|2944871_2945321_-	hypothetical protein	NA	NA	NA	NA
WP_000614334.1\|2945317_2948077_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	4.7e-82	28.4
WP_000343293.1\|2948085_2948847_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000246416.1\|2948851_2950183_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001080149.1\|2950185_2950710_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_001113703.1\|2950706_2951987_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_096549179.1\|2952011_2953094_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000393844.1\|2953057_2954908_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000611742.1\|2954911_2955325_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000056978.1\|2955331_2956807_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000123970.1\|2956857_2957082_-	hypothetical protein	NA	NA	NA	NA
WP_000037397.1\|2957116_2957617_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_001142958.1\|2958313_2958832_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_044527364.1\|2959041_2961183_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	8.2e-26	25.0
WP_000939262.1\|2964893_2965376_+	hypothetical protein	NA	NA	NA	NA
WP_122985282.1\|2965290_2965476_-	hypothetical protein	NA	NA	NA	NA
WP_001118038.1\|2967963_2968734_-	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_000532698.1\|2968887_2969361_+	C-lysozyme inhibitor	NA	NA	NA	NA
WP_000973081.1\|2969403_2971848_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_000284050.1\|2972087_2972666_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_000333380.1\|2972871_2973639_+	class II glutamine amidotransferase	NA	NA	NA	NA
WP_001225679.1\|2973609_2974350_-	murein L,D-transpeptidase	NA	NA	NA	NA
WP_000615976.1\|2974505_2974784_-	type II toxin-antitoxin system mRNA interferase toxin YafQ	NA	NA	NA	NA
WP_000729704.1\|2974786_2975047_-	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA
WP_000543895.1\|2975232_2976006_+	NlpC/P60 family protein	A0A1V0DZX6	Clostridioides_phage	1.2e-19	37.7
WP_001030483.1\|2976062_2976419_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_000598760.1\|2976411_2976690_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_001296890.1\|2976794_2978534_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
WP_001296899.1\|2978493_2979264_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_001226182.1\|2979334_2980390_+	DNA polymerase IV	NA	NA	NA	NA
WP_001059855.1\|2980386_2980839_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001316884.1\|2981057_2982224_+	RNA ligase RtcB family protein	A0A222ZMP7	Mycobacterium_phage	2.1e-31	31.7
WP_000602103.1\|2982220_2982835_+	peptide chain release factor H	NA	NA	NA	NA
WP_001293016.1\|2982891_2984349_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001291990.1\|2984609_2985068_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_000189543.1\|2985159_2986404_+	esterase FrsA	NA	NA	NA	NA
WP_000174677.1\|2986461_2986863_+	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000749882.1\|2986901_2987957_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.3e-117	60.6
WP_001285288.1\|2988244_2989348_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000893255.1\|2989359_2990613_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.8e-96	47.2
WP_001130500.1\|2990967_2992134_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.4e-144	62.0
WP_064579183.1\|2992204_2993776_-	hypothetical protein	NA	NA	NA	NA
WP_012311686.1\|2994393_2994966_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	5.3e-97	98.9
WP_000984201.1\|2994980_2995226_-	transcriptional regulator	Q7M294	Enterobacteria_phage	1.8e-41	100.0
WP_001283022.1\|2995222_2995957_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.3e-128	97.5
WP_001149156.1\|2996519_2996786_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	6.3e-45	98.9
WP_087530358.1\|2996782_2997382_+	ash family protein	Q7M2A7	Enterobacteria_phage	3.9e-50	81.0
WP_001244665.1\|2997374_2997662_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
WP_000459318.1\|2997654_2998110_+	hypothetical protein	Q7M298	Enterobacteria_phage	4.7e-64	98.2
WP_000856729.1\|2998245_2998566_+	hypothetical protein	NA	NA	NA	NA
2998473:2998489	attR	NA	NA	NA	NA
WP_096695747.1\|2998580_3000914_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	98.3
WP_001111349.1\|3001532_3001943_-	transcriptional regulator	NA	NA	NA	NA
WP_000121356.1\|3001921_3002878_-	molybdenum cofactor insertion chaperone PaoD	NA	NA	NA	NA
WP_000667065.1\|3002888_3005087_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	A0A0P0I429	Acinetobacter_phage	2.5e-38	25.8

DBSCAN-SWA_7

3274596 : 3339094

Enterobacteria_phage(42.59%)

tRNA,tail,portal,lysis,capsid,protease,transposase,integrase,terminase,head

attL 3284758:3284804|attR 3330568:3330614

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912345.1\|3274596_3275982_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143552.1\|3276017_3276539_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|3276646_3276859_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729154.1\|3276860_3277727_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_001369891.1\|3278207_3278750_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988366.1\|3278969_3279662_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_001369975.1\|3279692_3282302_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000691049.1\|3282314_3283322_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001250425.1\|3283332_3283848_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805428.1\|3283850_3284483_-	fimbriae biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
3284758:3284804	attL	NA	NA	NA	NA
WP_001369915.1\|3284817_3285981_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.4e-199	86.3
WP_012599996.1\|3285836_3286292_-	helix-turn-helix domain-containing protein	U5P4J3	Shigella_phage	3.4e-62	83.3
WP_000206813.1\|3286207_3286513_-	hypothetical protein	U5P0J0	Shigella_phage	1.4e-48	95.0
WP_001242707.1\|3286512_3286875_-	phage protein	K7PH61	Enterobacteria_phage	4.4e-65	98.3
WP_000008170.1\|3286865_3287402_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	9.0e-99	97.8
WP_000081287.1\|3287529_3288354_-	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
WP_000135682.1\|3288419_3288782_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_000559922.1\|3289252_3289768_+	hypothetical protein	NA	NA	NA	NA
WP_000450738.1\|3289995_3290622_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	2.5e-47	48.8
WP_000205494.1\|3290719_3290920_+	cell division protein	NA	NA	NA	NA
WP_000515870.1\|3290957_3291509_+	hypothetical protein	U5P4K1	Shigella_phage	1.7e-100	98.9
WP_001250269.1\|3291684_3291864_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_001369913.1\|3291853_3292795_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	4.9e-140	93.0
WP_001573323.1\|3292791_3293286_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	6.2e-86	97.5
WP_000210176.1\|3293285_3293612_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.3e-52	97.2
WP_000767127.1\|3293608_3293998_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
WP_001061408.1\|3294017_3294815_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	7.5e-150	99.6
WP_001358249.1\|3294822_3295812_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.4e-190	97.0
WP_001204780.1\|3295829_3296213_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.0e-56	84.2
WP_000737283.1\|3296402_3297500_-	porin	Q1MVN1	Enterobacteria_phage	4.8e-155	76.3
WP_000670959.1\|3298088_3298304_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	3.4e-33	98.6
WP_001135281.1\|3298303_3298801_+	lysozyme	M1FJA0	Enterobacteria_phage	1.1e-90	98.2
WP_001228697.1\|3299017_3299200_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	1.4e-16	78.3
WP_000738500.1\|3299290_3299584_-	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	5.7e-47	97.9
WP_000079503.1\|3299874_3300285_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-71	98.5
WP_001031427.1\|3300570_3300777_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
WP_001421937.1\|3300941_3301136_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	8.7e-28	100.0
WP_032146712.1\|3301151_3301409_-	hypothetical protein	A0A0K2FJC5	Escherichia_phage	6.8e-12	100.0
WP_000453587.1\|3301524_3302070_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001027283.1\|3302044_3303970_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
WP_000198149.1\|3303966_3304173_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001369921.1\|3304169_3305771_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.9e-309	98.9
WP_000123273.1\|3305751_3307071_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.6e-232	98.2
WP_001369910.1\|3307080_3307413_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.1e-54	98.2
WP_000063218.1\|3307468_3308494_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.4e-188	97.7
WP_000158868.1\|3308535_3308931_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_000753019.1\|3308942_3309296_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.6e-62	98.3
WP_000975051.1\|3309307_3309886_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.5e-80	97.9
WP_000683105.1\|3309882_3310278_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_001345558.1\|3310285_3311026_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.0e-128	96.7
WP_000479154.1\|3311041_3311464_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	9.7e-72	99.3
WP_000459458.1\|3311445_3311880_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.5e-64	99.2
WP_000847379.1\|3314430_3314760_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_001152639.1\|3314759_3315458_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
WP_000194780.1\|3315463_3316207_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
WP_071532093.1\|3316143_3316776_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.4e-95	99.0
WP_000515725.1\|3316836_3320250_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.2
WP_001233071.1\|3320320_3320920_+	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	4.4e-110	98.5
WP_000279163.1\|3320984_3323945_+	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	4.0e-55	53.7
WP_000885616.1\|3323944_3324520_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_000086514.1\|3324617_3325208_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	7.3e-25	38.8
WP_000836768.1\|3325524_3325758_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_120795384.1\|3325826_3325940_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000239874.1\|3326305_3326974_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937502.1\|3327030_3327336_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
WP_001226378.1\|3327519_3329004_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201825.1\|3329190_3330144_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001177464.1\|3330657_3331419_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
3330568:3330614	attR	NA	NA	NA	NA
WP_001224569.1\|3331601_3332492_-	DUF4434 family protein	NA	NA	NA	NA
WP_000662376.1\|3332492_3335465_-	phage receptor	NA	NA	NA	NA
WP_000383954.1\|3335451_3337689_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_000394594.1\|3337957_3339094_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

3677388 : 3695080

uncultured_Caudovirales_phage(76.92%)

capsid,protease,portal,integrase,terminase,head

attL 3676714:3676728|attR 3681562:3681576

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3676714:3676728	attL	NA	NA	NA	NA
WP_047083650.1\|3677388_3678627_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-126	53.7
WP_024213440.1\|3679035_3679230_+	AlpA family phage regulatory protein	A0A2H4JB58	uncultured_Caudovirales_phage	7.7e-16	66.1
WP_077792655.1\|3679323_3680238_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_001824715.1\|3680230_3680458_+	hypothetical protein	NA	NA	NA	NA
WP_000770163.1\|3680463_3680763_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_001672401.1\|3680759_3682892_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.1e-174	53.1
3681562:3681576	attR	NA	NA	NA	NA
WP_047083326.1\|3683264_3683516_+	hypothetical protein	NA	NA	NA	NA
WP_064579075.1\|3683512_3683923_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_064579076.1\|3683933_3684206_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_064579077.1\|3684494_3685652_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	7.3e-138	65.1
WP_001475696.1\|3685707_3686265_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	4.1e-62	64.1
WP_123004769.1\|3686302_3687478_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	6.2e-185	80.2
WP_062877204.1\|3687474_3687813_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.9e-30	51.8
WP_000134111.1\|3687809_3688106_+	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	4.0e-32	65.3
WP_001145908.1\|3688105_3688546_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	7.8e-56	67.8
WP_024166058.1\|3688529_3688712_+	hypothetical protein	NA	NA	NA	NA
WP_000113645.1\|3688836_3689193_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
WP_000127882.1\|3689176_3690838_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	5.7e-277	81.2
WP_062881264.1\|3690851_3691133_+	hypothetical protein	NA	NA	NA	NA
WP_072004446.1\|3692116_3692317_-	hypothetical protein	NA	NA	NA	NA
WP_000520781.1\|3692452_3692773_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000934041.1\|3692803_3695080_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5

DBSCAN-SWA_9

3953297 : 4073527

163

Escherichia_phage(25.83%)

holin,plate,tail,portal,capsid,protease,tRNA,integrase,terminase,head

attL 3971893:3971914|attR 4037077:4037098

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000074972.1\|3953297_3954416_-\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	1.5e-82	43.6
WP_054250470.1\|3954384_3954654_-	excisionase	NA	NA	NA	NA
WP_096560541.1\|3954715_3957187_-	exonuclease	A0A192Y6E0	Salmonella_phage	1.7e-54	56.0
WP_064579146.1\|3957282_3957471_-	DUF1482 family protein	NA	NA	NA	NA
WP_000450222.1\|3957467_3957656_-	cell division inhibitor	NA	NA	NA	NA
WP_000390585.1\|3957952_3958195_+	hypothetical protein	NA	NA	NA	NA
WP_000559918.1\|3958184_3958700_+	hypothetical protein	NA	NA	NA	NA
WP_000380318.1\|3958813_3958966_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_032211256.1\|3959243_3959531_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_064579147.1\|3959531_3959723_-	hypothetical protein	NA	NA	NA	NA
WP_064579148.1\|3959691_3960153_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	1.2e-09	55.4
WP_000448216.1\|3960172_3960544_-	hypothetical protein	NA	NA	NA	NA
WP_021577226.1\|3960646_3960928_+	hypothetical protein	NA	NA	NA	NA
WP_000693827.1\|3960931_3961357_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_052909572.1\|3961425_3962457_+	phage replisome organizer	A0A0U2RT81	Escherichia_phage	8.4e-85	69.1
WP_001379651.1\|3962488_3962911_+	replication protein	A0A0U2JGJ0	Escherichia_phage	5.7e-72	90.0
WP_047082289.1\|3962944_3963661_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	8.7e-73	62.1
WP_000017341.1\|3963657_3963975_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.4e-35	75.0
WP_053294093.1\|3963971_3964277_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	1.7e-49	92.1
WP_022581296.1\|3964424_3964607_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	3.8e-25	93.3
WP_001289992.1\|3964772_3965288_+	hypothetical protein	A0A076GCN9	Escherichia_phage	1.1e-37	78.6
WP_001398985.1\|3965521_3965734_+	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.4e-16	67.1
WP_064579150.1\|3965900_3966173_+	hypothetical protein	I6PCV7	Cronobacter_phage	4.2e-12	50.8
WP_032284906.1\|3966174_3967224_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	7.7e-110	54.6
WP_000904388.1\|3967236_3967611_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.8e-35	63.6
WP_000762903.1\|3967607_3968429_+	hypothetical protein	K7P7B9	Enterobacteria_phage	2.9e-80	59.7
WP_000917741.1\|3968655_3968853_+	hypothetical protein	A0A0P0ZDH6	Stx2-converting_phage	8.0e-29	100.0
WP_064579151.1\|3969003_3970062_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	2.1e-208	99.7
WP_000649753.1\|3970444_3971404_+	Shiga toxin Stx2c subunit A	Q776Q3	Enterobacteria_phage	5.6e-176	100.0
WP_000738072.1\|3971415_3971685_+	Shiga toxin Stx2a subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
3971893:3971914	attL	NA	NA	NA	NA
WP_151061607.1\|3972549_3974487_+	DUF1737 domain-containing protein	S5MDQ7	Escherichia_phage	0.0e+00	94.3
WP_000143458.1\|3974624_3974804_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290230.1\|3974844_3975090_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000284490.1\|3975167_3975383_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	2.0e-33	98.6
WP_039264424.1\|3975386_3976178_+	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	4.0e-34	86.7
WP_001092874.1\|3976689_3977223_+	lysozyme	Q6H9V6	Enterobacteria_phage	1.4e-99	95.5
WP_062896309.1\|3977379_3977562_+	hypothetical protein	NA	NA	NA	NA
WP_071974579.1\|3977930_3978137_+	hypothetical protein	H6WRZ6	Salmonella_phage	4.6e-11	63.2
WP_000735655.1\|3978201_3978426_+	hypothetical protein	NA	NA	NA	NA
WP_032315111.1\|3978386_3978587_+	hypothetical protein	Q9T1L1	Enterobacteria_phage	9.0e-12	75.6
WP_001405844.1\|3978918_3979425_+	DNA-packaging protein	O64316	Escherichia_phage	1.6e-33	48.5
WP_001499025.1\|3979396_3981325_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.7e-259	65.7
WP_000259002.1\|3981308_3981515_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_096549216.1\|3981511_3983104_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.5e-186	61.5
WP_001253971.1\|3983093_3984599_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.6e-100	52.6
WP_096549215.1\|3984635_3984983_+\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	5.8e-22	57.0
WP_064549420.1\|3985040_3986069_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.9e-114	61.9
WP_047081403.1\|3986120_3986504_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_001204531.1\|3986496_3986850_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.8e-40	69.2
WP_000974993.1\|3986865_3987441_+\|tail	tail protein	A0A2R9YJK4	Escherichia_phage	2.9e-50	57.8
WP_000683075.1\|3987437_3987833_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	2.2e-57	80.9
WP_052903742.1\|3987840_3988590_+\|tail	phage tail protein	S5M7Q5	Escherichia_phage	3.1e-129	93.2
WP_001299690.1\|3988605_3989037_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
WP_072032653.1\|3989063_3989477_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	83.8
WP_096549214.1\|3989457_3992037_+\|tail	phage tail tape measure protein	S5MBY3	Escherichia_phage	0.0e+00	86.0
WP_000847280.1\|3992033_3992363_+\|tail	phage tail protein	S5MW28	Escherichia_phage	1.2e-58	99.1
WP_106901605.1\|3992362_3993061_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	1.2e-132	99.1
WP_106901606.1\|3993071_3993815_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	1.6e-146	96.4
WP_072121435.1\|3993760_3994393_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	4.3e-100	90.5
WP_106901607.1\|3994632_3998319_+	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	88.0
WP_000078853.1\|3998517_3998658_+	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.9e-17	95.7
WP_050867622.1\|3998801_4000460_+\|tail	phage tail protein	S5MDN9	Escherichia_phage	5.9e-72	53.4
WP_000438830.1\|4000469_4000682_+	hypothetical protein	NA	NA	NA	NA
WP_001373129.1\|4000693_4001368_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	3.3e-114	90.1
WP_022581964.1\|4001531_4001861_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_000799399.1\|4002026_4002890_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000531601.1\|4002873_4004010_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	9.4e-29	39.8
WP_000359432.1\|4004259_4005489_+	peptidase T	NA	NA	NA	NA
WP_000456506.1\|4005634_4006756_-	cupin domain-containing protein	NA	NA	NA	NA
WP_000085265.1\|4007004_4008234_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.5e-133	55.9
WP_000953271.1\|4008608_4008797_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	5.9e-13	64.2
WP_000103621.1\|4009334_4009514_-	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	1.5e-10	58.6
WP_000184034.1\|4009734_4009962_-	hypothetical protein	NA	NA	NA	NA
WP_000201463.1\|4010019_4010199_-	hypothetical protein	NA	NA	NA	NA
WP_001398590.1\|4010391_4010955_+	host cell division inhibitor Icd-like protein	Q8SBF3	Shigella_phage	8.0e-13	40.0
WP_032279725.1\|4010941_4011142_+	hypothetical protein	NA	NA	NA	NA
WP_000728896.1\|4011147_4011447_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000833612.1\|4011443_4012841_+	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.5e-113	49.2
WP_024200918.1\|4013043_4013295_+	hypothetical protein	NA	NA	NA	NA
WP_032317163.1\|4013408_4013606_+	hypothetical protein	NA	NA	NA	NA
WP_000126663.1\|4013615_4014026_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000233314.1\|4014036_4014285_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001142405.1\|4014425_4014650_+	hypothetical protein	NA	NA	NA	NA
WP_001137342.1\|4014941_4016099_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	2.1e-137	64.9
WP_000504057.1\|4016138_4016711_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	3.6e-61	63.0
WP_140436580.1\|4016748_4017924_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	6.2e-185	80.2
WP_001020671.1\|4017920_4018259_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.5e-30	51.8
WP_000134113.1\|4018255_4018552_+	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	4.0e-32	65.3
WP_001145905.1\|4018551_4018992_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.5e-62	72.6
WP_074404611.1\|4018975_4019158_+	hypothetical protein	NA	NA	NA	NA
WP_000113645.1\|4019280_4019637_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
WP_000127881.1\|4019620_4021282_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	2.0e-277	81.4
WP_000133415.1\|4021295_4021577_+	hypothetical protein	NA	NA	NA	NA
WP_000735412.1\|4022426_4023887_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|4023886_4024558_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423729.1\|4024725_4026096_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
WP_001297479.1\|4026099_4026741_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001297484.1\|4026776_4027883_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476089.1\|4027936_4028398_-	phosphatase NudJ	NA	NA	NA	NA
WP_096549218.1\|4028390_4029068_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444487.1\|4029239_4030490_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_000885267.1\|4030896_4033224_-	ATPase AAA	NA	NA	NA	NA
WP_064579187.1\|4033542_4034670_-\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	1.6e-121	60.5
WP_001527050.1\|4034650_4034896_-	phage excisionase	NA	NA	NA	NA
WP_000008212.1\|4034950_4035487_-	HD family hydrolase	U5P0T3	Shigella_phage	3.9e-94	94.3
WP_000081287.1\|4035615_4036440_-	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	100.0
WP_000135682.1\|4036505_4036868_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_000141753.1\|4037305_4037551_+	hypothetical protein	NA	NA	NA	NA
4037077:4037098	attR	NA	NA	NA	NA
WP_001514782.1\|4037468_4037744_-	hypothetical protein	Q8SBF7	Shigella_phage	7.0e-47	97.8
WP_001369946.1\|4037752_4037956_-	ClpX C4-type zinc finger	A0A1C9IHZ4	Salmonella_phage	8.9e-15	68.3
WP_001369890.1\|4038232_4038925_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	2.3e-126	99.6
WP_001191674.1\|4039022_4039283_+	helix-turn-helix transcriptional regulator	S5FKP1	Shigella_phage	7.1e-41	100.0
WP_000515847.1\|4039275_4039827_+	hypothetical protein	S5FXP0	Shigella_phage	2.9e-100	98.4
WP_001250269.1\|4040002_4040182_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104988.1\|4040171_4041113_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	8.6e-153	99.4
WP_001369966.1\|4041602_4042256_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	2.5e-127	99.1
WP_096549146.1\|4042252_4042579_+	LexA family transcriptional regulator	A5LH73	Enterobacteria_phage	4.5e-53	99.1
WP_000767113.1\|4042575_4042965_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_001061425.1\|4042984_4043827_+	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	6.3e-139	91.5
WP_033812102.1\|4043834_4044824_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.6e-194	99.4
WP_001205449.1\|4044841_4045189_+	antitermination protein Q	A0A0P0ZCW0	Stx2-converting_phage	8.0e-56	85.0
WP_001198055.1\|4045202_4046294_-	MBL fold metallo-hydrolase	Q332C0	Clostridium_botulinum_C_phage	5.3e-05	35.4
WP_106901609.1\|4046273_4046405_+	hypothetical protein	NA	NA	NA	NA
WP_000143147.1\|4046886_4047603_-	hypothetical protein	NA	NA	NA	NA
WP_001120498.1\|4047978_4048305_+\|holin	phage holin, lambda family	S5FM86	Shigella_phage	3.4e-56	98.1
WP_001148537.1\|4048308_4048785_+	glycoside hydrolase family protein	S5FV07	Shigella_phage	8.3e-88	98.7
WP_001369893.1\|4048768_4049161_+	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	6.5e-54	89.2
WP_122985440.1\|4049045_4049321_+	peptidase	U5P461	Shigella_phage	9.8e-33	82.4
WP_001140095.1\|4049613_4049964_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	6.8e-63	95.7
WP_000929173.1\|4050090_4050585_+\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	1.3e-88	100.0
WP_072011717.1\|4050818_4052315_+\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	7.4e-300	99.8
WP_000605606.1\|4052326_4052509_+	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
WP_000466253.1\|4052508_4053750_+\|portal	phage portal protein	U5P411	Shigella_phage	2.6e-242	99.5
WP_001398562.1\|4053727_4054378_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	7.3e-119	99.5
WP_000257511.1\|4054392_4055598_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	1.2e-223	99.5
WP_000601360.1\|4055647_4055848_+	hypothetical protein	S5FNU1	Shigella_phage	3.8e-26	97.0
WP_000927719.1\|4055850_4056174_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_000702388.1\|4056170_4056581_+\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
WP_000213502.1\|4056555_4057062_+	hypothetical protein	M1FPE2	Enterobacteria_phage	1.7e-91	100.0
WP_000779292.1\|4057058_4057619_+	hypothetical protein	M1FQV7	Enterobacteria_phage	1.0e-105	100.0
WP_000497751.1\|4057627_4057798_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_000155716.1\|4057781_4059278_+\|tail	tail sheath protein	M1FN90	Enterobacteria_phage	1.2e-273	99.2
WP_000090998.1\|4059277_4059634_+	hypothetical protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_000811154.1\|4059633_4059903_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	7.8e-43	98.9
WP_001303047.1\|4059869_4060058_+	hypothetical protein	NA	NA	NA	NA
WP_000807196.1\|4060044_4061880_+\|tail	phage tail tape measure protein	Q8SBG9	Shigella_phage	1.5e-307	99.3
WP_000219910.1\|4061940_4063269_+	DNA circularization protein	Q8SBG8	Shigella_phage	2.5e-246	98.9
WP_000999507.1\|4063265_4064345_+	hypothetical protein	U5P0H6	Shigella_phage	4.5e-206	99.4
WP_001259081.1\|4064344_4064893_+\|plate	phage baseplate assembly protein V	Q8SBG6	Shigella_phage	1.5e-96	99.5
WP_000424732.1\|4064892_4065318_+	hypothetical protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_000785311.1\|4065304_4066363_+\|plate	baseplate J/gp47 family protein	Q8SBG4	Shigella_phage	8.1e-200	98.6
WP_000383545.1\|4066353_4066938_+	YmfQ family protein	O22003	Shigella_phage	2.4e-113	99.5
WP_000554690.1\|4066941_4067724_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	5.4e-92	97.6
WP_001057699.1\|4067723_4068326_+\|tail	tail fiber assembly protein	A0A0F7LDQ5	Escherichia_phage	8.9e-95	88.4
WP_096549148.1\|4068297_4068729_-\|tail	phage tail protein	A0A0F7LDZ0	Escherichia_phage	4.8e-42	73.7
WP_032193144.1\|4068731_4069127_-	hypothetical protein	F1BUP1	Erwinia_phage	6.0e-15	37.8
WP_000905000.1\|4069156_4069711_+	site-specific DNA recombinase	A0A1S6L009	Salmonella_phage	4.4e-88	88.9
WP_000557907.1\|4069817_4070651_+	5-methylcytosine-specific restriction enzyme A	NA	NA	NA	NA
WP_000943926.1\|4070884_4071049_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-24	100.0
WP_001307134.1\|4071151_4071475_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	8.0e-42	65.4
WP_032141808.1\|4072007_4072118_-	hypothetical protein	NA	NA	NA	NA
WP_000373101.1\|4072170_4072575_-	DUF1398 domain-containing protein	NA	NA	NA	NA
WP_000332302.1\|4072795_4073527_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	2.7e-53	50.5

DBSCAN-SWA_10

4171423 : 4240619

Escherichia_phage(27.78%)

holin,capsid,portal,tail,lysis,protease,integrase,terminase,head

attL 4171245:4171272|attR 4226814:4226841

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4171245:4171272	attL	NA	NA	NA	NA
WP_000113693.1\|4171423_4172554_-\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	4.0e-104	51.4
WP_000113183.1\|4172531_4172780_-	excisionase	NA	NA	NA	NA
WP_151061608.1\|4172844_4175316_-	exonuclease	A0A192Y6E0	Salmonella_phage	1.7e-54	56.0
WP_000092839.1\|4175411_4175600_-	DUF1482 family protein	NA	NA	NA	NA
WP_000450222.1\|4175596_4175785_-	cell division inhibitor	NA	NA	NA	NA
WP_038812338.1\|4176333_4176636_+	hypothetical protein	NA	NA	NA	NA
WP_001365839.1\|4176559_4176928_-	hypothetical protein	NA	NA	NA	NA
WP_000380317.1\|4176939_4177092_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	5.1e-07	53.2
WP_001003380.1\|4177281_4177689_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	5.5e-24	45.4
WP_000476991.1\|4177766_4177994_+	transcriptional regulator	NA	NA	NA	NA
WP_000705131.1\|4177977_4178499_+	hypothetical protein	NA	NA	NA	NA
WP_096549153.1\|4178479_4179445_+	hypothetical protein	U5P0A0	Shigella_phage	1.3e-55	61.8
WP_096549154.1\|4179451_4180192_+	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	1.4e-113	82.7
WP_000450858.1\|4180221_4180983_+	DUF1627 domain-containing protein	A0A088CE47	Shigella_phage	8.4e-74	64.0
WP_000215513.1\|4181042_4181237_+	hypothetical protein	NA	NA	NA	NA
WP_000211993.1\|4181578_4182130_+	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	5.5e-43	53.3
WP_000882661.1\|4182344_4182557_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.6e-28	94.3
WP_000042395.1\|4182659_4182977_-	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001452497.1\|4183565_4183793_+	hypothetical protein	NA	NA	NA	NA
WP_024199763.1\|4183846_4184116_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.2e-11	52.5
WP_050877448.1\|4184117_4185167_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.5e-110	54.3
WP_000904164.1\|4185179_4185542_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-34	61.9
WP_001064918.1\|4185534_4186200_+	antiterminator	I6PDF8	Cronobacter_phage	1.6e-60	52.0
WP_000342737.1\|4186453_4187167_+	hypothetical protein	NA	NA	NA	NA
WP_000917733.1\|4187340_4187538_+	hypothetical protein	S5MQK8	Escherichia_phage	6.8e-28	96.9
WP_064579144.1\|4187688_4188747_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	4.4e-206	98.6
WP_000271631.1\|4189227_4189656_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_000382067.1\|4190352_4191078_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024166055.1\|4191167_4191446_+	hypothetical protein	NA	NA	NA	NA
WP_071532096.1\|4192059_4192284_+	hypothetical protein	NA	NA	NA	NA
WP_062878147.1\|4192942_4194907_+	SASA family carbohydrate esterase	A0A0P0ZBH7	Stx2-converting_phage	8.0e-294	78.3
WP_000142780.1\|4195041_4195221_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	5.4e-24	93.2
WP_001290230.1\|4195261_4195507_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000284506.1\|4195584_4195800_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_024200907.1\|4195803_4196472_+	hypothetical protein	Q08JA0	Stx2-converting_phage	6.0e-60	76.7
WP_001063216.1\|4196451_4196772_-	hypothetical protein	NA	NA	NA	NA
WP_000992036.1\|4196897_4197431_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	7.4e-101	97.2
WP_072024677.1\|4197587_4197770_+	hypothetical protein	NA	NA	NA	NA
WP_024173692.1\|4197918_4198386_+\|lysis	lysis protein	A0A0H4IT10	Shigella_phage	7.9e-67	87.1
WP_106901626.1\|4198497_4199121_+	Rha family transcriptional regulator	A0A0P0ZFJ1	Escherichia_phage	3.5e-62	67.6
WP_042187665.1\|4199148_4199349_+	hypothetical protein	Q9T1L1	Enterobacteria_phage	1.1e-09	76.9
WP_044696931.1\|4199270_4199522_+	hypothetical protein	H6WZK4	Escherichia_phage	2.2e-31	98.6
WP_000828070.1\|4199457_4199784_+	TonB family protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
WP_000095744.1\|4199915_4200116_-	DUF3950 domain-containing protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_000829192.1\|4200157_4200523_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.6e-62	96.7
WP_000958387.1\|4200811_4201375_+\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
WP_001398587.1\|4201371_4203033_+\|terminase	terminase large subunit	A0A0P0ZEI4	Stx2-converting_phage	0.0e+00	99.6
WP_000172990.1\|4203096_4205034_+\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.7
WP_001063099.1\|4205078_4205300_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_001365916.1\|4205245_4207831_+\|portal	phage portal protein	B6DZA1	Enterobacteria_phage	0.0e+00	96.3
WP_000126028.1\|4207827_4208154_+\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	3.9e-52	97.2
WP_001007902.1\|4208164_4208515_+\|head	phage head closure protein	A0A0P0ZCU6	Stx2-converting_phage	2.0e-59	99.1
WP_000573396.1\|4208511_4208958_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	9.9e-75	98.6
WP_000133383.1\|4208954_4209299_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	4.2e-57	99.1
WP_001275414.1\|4209365_4210082_+\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	1.5e-125	98.7
WP_000710936.1\|4210096_4210471_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	3.9e-64	98.4
WP_122993267.1\|4210566_4210776_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	98.6
WP_096549210.1\|4210824_4214067_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	89.2
WP_000343412.1\|4214059_4214401_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.6e-51	82.1
WP_000738904.1\|4214599_4215763_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-140	66.9
WP_001499019.1\|4215973_4216672_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	2.1e-132	98.7
WP_106901611.1\|4216682_4217426_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	4.6e-141	93.9
WP_122993618.1\|4217371_4218004_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.9e-100	91.0
WP_106901612.1\|4218914_4222610_+	DUF1983 domain-containing protein	Q6H9T2	Enterobacteria_phage	0.0e+00	84.2
WP_001270059.1\|4222678_4223302_+	Ail/Lom family outer membrane beta-barrel protein	A0A1U8QHD6	Enterobacteria_phage	9.0e-66	59.9
WP_064579137.1\|4223451_4224639_+\|tail	phage tail protein	S5MDN9	Escherichia_phage	1.5e-53	97.3
WP_001049908.1\|4224707_4225379_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	2.8e-105	83.0
WP_001079499.1\|4226991_4227498_-	ferritin-like domain-containing protein	NA	NA	NA	NA
4226814:4226841	attR	NA	NA	NA	NA
WP_001056491.1\|4227543_4228044_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|4228129_4228309_-	general stress protein	NA	NA	NA	NA
WP_000443056.1\|4228689_4229496_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209516.1\|4229495_4230689_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_024177467.1\|4230700_4232059_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.0e-37	41.2
WP_000763511.1\|4232062_4233658_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194592.1\|4233657_4235220_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|4235311_4235356_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285661.1\|4235493_4236375_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|4236371_4236992_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001291216.1\|4237092_4237965_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278906.1\|4238004_4238595_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559280.1\|4238591_4239350_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.5e-06	25.0
WP_000422045.1\|4239569_4240619_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_11

4308759 : 4331036

Salmonella_phage(19.05%)

integrase

attL 4302593:4302607|attR 4330151:4330165

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4302593:4302607	attL	NA	NA	NA	NA
WP_000945005.1\|4308759_4309275_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.4e-24	42.8
WP_096549061.1\|4309493_4310729_+\|integrase	tyrosine-type recombinase/integrase	I6R9B6	Salmonella_phage	6.1e-98	45.1
WP_047631195.1\|4310686_4310905_-	hypothetical protein	A0A1P8DTG1	Proteus_phage	9.2e-10	44.3
WP_096549062.1\|4310897_4311560_-	hypothetical protein	NA	NA	NA	NA
WP_021518993.1\|4311751_4312183_-	recombination protein NinB	A0A2I6PIF6	Escherichia_phage	3.5e-37	53.5
WP_096549063.1\|4312169_4312385_-	hypothetical protein	NA	NA	NA	NA
WP_096549064.1\|4312381_4312594_-	hypothetical protein	NA	NA	NA	NA
WP_096549065.1\|4312590_4313148_-	hypothetical protein	NA	NA	NA	NA
WP_096549066.1\|4313227_4314649_-	AAA family ATPase	A0A192Y673	Salmonella_phage	1.9e-140	57.4
WP_096549067.1\|4314667_4315786_-	hypothetical protein	M9QWT5	Shigella_phage	1.5e-151	67.1
WP_096549068.1\|4315818_4316622_-	hypothetical protein	A0A248SL11	Klebsiella_phage	3.1e-34	35.5
WP_096549069.1\|4317964_4318210_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_096549070.1\|4318517_4319165_+	helix-turn-helix domain-containing protein	A0A286S2B2	Klebsiella_phage	5.7e-55	51.4
WP_096549071.1\|4319640_4319931_+	hypothetical protein	NA	NA	NA	NA
WP_096549072.1\|4320077_4320722_+	ERF family protein	I6RSN3	Salmonella_phage	5.6e-55	54.5
WP_096549073.1\|4320705_4321314_+	hypothetical protein	A0A173GAX4	Staphylococcus_phage	2.1e-11	45.6
WP_096549074.1\|4321313_4321763_+	single-stranded DNA-binding protein	H9C0R6	Aeromonas_phage	7.5e-22	49.5
WP_096549130.1\|4321821_4322265_+	hypothetical protein	A0A2H4YHG9	Raoultella_phage	2.2e-26	47.5
WP_096549075.1\|4322248_4322530_+	hypothetical protein	G9L665	Escherichia_phage	5.5e-07	35.8
WP_096549076.1\|4322542_4322788_+	hypothetical protein	NA	NA	NA	NA
WP_089580304.1\|4323025_4323298_+	toxin-antitoxin system toxin subunit	NA	NA	NA	NA
WP_096549077.1\|4323288_4323480_+	hypothetical protein	NA	NA	NA	NA
WP_096549078.1\|4323469_4323802_+	hypothetical protein	NA	NA	NA	NA
WP_096549079.1\|4323813_4324434_+	hypothetical protein	NA	NA	NA	NA
WP_057697143.1\|4324533_4324716_+	hypothetical protein	NA	NA	NA	NA
WP_057697142.1\|4324727_4324946_+	hypothetical protein	NA	NA	NA	NA
WP_096549080.1\|4325134_4325329_+	hypothetical protein	NA	NA	NA	NA
WP_096549081.1\|4325318_4325522_+	hypothetical protein	H6WCL9	Enterobacteria_phage	1.1e-28	80.6
WP_096549082.1\|4325522_4325744_+	cell division protein FtsK	NA	NA	NA	NA
WP_057697174.1\|4325763_4325997_+	hypothetical protein	H6WCM1	Enterobacteria_phage	5.8e-34	90.9
WP_096549083.1\|4326006_4326546_+	phage N-6-adenine-methyltransferase	H6WCM2	Enterobacteria_phage	4.8e-100	91.1
WP_096549084.1\|4327019_4327517_+	hypothetical protein	NA	NA	NA	NA
WP_096549085.1\|4327523_4328051_+	hypothetical protein	A0A0K0VLD3	Klebsiella_phage	1.3e-28	45.1
WP_096549131.1\|4328031_4328766_+	DNA cytosine methyltransferase	A0A192Y8I6	Enterobacteria_phage	2.2e-87	64.4
WP_096549086.1\|4329120_4329726_+	protein NinG	G0ZNC4	Cronobacter_phage	2.6e-41	53.1
WP_096549087.1\|4329722_4330142_+	RusA family crossover junction endodeoxyribonuclease	F1C5C9	Cronobacter_phage	4.2e-35	54.8
WP_096549088.1\|4330125_4330308_+	hypothetical protein	NA	NA	NA	NA
4330151:4330165	attR	NA	NA	NA	NA
WP_096549089.1\|4330307_4331036_+	antitermination protein	A0A0M4RTW7	Salmonella_phage	1.1e-35	34.6

DBSCAN-SWA_12

4335184 : 4353685

Salmonella_phage(58.82%)

head,tail,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057697172.1\|4335184_4335397_+	hypothetical protein	A0A1V0E5H9	Salmonella_phage	3.8e-08	60.0
WP_072147474.1\|4335393_4335885_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	7.3e-55	62.8
WP_096549100.1\|4335872_4336343_+\|lysis	lysis protein	NA	NA	NA	NA
WP_096549101.1\|4336352_4336655_+	hypothetical protein	NA	NA	NA	NA
WP_096549102.1\|4336930_4337473_+	hypothetical protein	C6ZR72	Salmonella_phage	1.7e-20	44.1
WP_096549103.1\|4338283_4338766_+	DNA-binding protein	Q716H4	Shigella_phage	2.8e-22	41.1
WP_096549104.1\|4338768_4340247_+	DNA-packaging protein	G0ZND4	Cronobacter_phage	1.8e-197	68.5
WP_096549105.1\|4340325_4341699_+	DUF1073 domain-containing protein	H6WRT0	Salmonella_phage	6.7e-146	58.9
WP_096549132.1\|4341688_4342585_+\|head	phage head morphogenesis protein	H6WRT1	Salmonella_phage	1.6e-71	49.5
WP_096549106.1\|4342575_4343910_+	hypothetical protein	A0A1V0E5Q9	Salmonella_phage	3.4e-110	52.3
WP_096549107.1\|4343926_4344298_+	hypothetical protein	G0ZND8	Cronobacter_phage	2.6e-20	42.8
WP_096549108.1\|4344315_4345365_+	hypothetical protein	Q5G8Y0	Enterobacteria_phage	2.7e-131	64.4
WP_096549109.1\|4345431_4345818_+	hypothetical protein	Q5G8X8	Enterobacteria_phage	3.8e-38	60.9
WP_096549110.1\|4345820_4346006_+	hypothetical protein	NA	NA	NA	NA
WP_096549111.1\|4345998_4346385_+	hypothetical protein	NA	NA	NA	NA
WP_096549112.1\|4346396_4346831_+	hypothetical protein	A0A1V0E5P5	Salmonella_phage	5.3e-41	57.9
WP_096549113.1\|4346827_4347214_+	hypothetical protein	Q5G8X4	Enterobacteria_phage	2.8e-41	62.5
WP_096549114.1\|4347227_4347734_+	hypothetical protein	A0A1V0E5P2	Salmonella_phage	7.6e-55	64.9
WP_096549133.1\|4347778_4348459_+	hypothetical protein	H6WRU2	Salmonella_phage	1.4e-40	41.3
WP_096549115.1\|4348473_4349085_-	hypothetical protein	NA	NA	NA	NA
WP_096549116.1\|4349212_4352089_+	tape measure protein	Q5G8W8	Enterobacteria_phage	1.6e-69	38.7
WP_096549117.1\|4352123_4352303_-	hypothetical protein	NA	NA	NA	NA
WP_096549118.1\|4352302_4352482_-	hypothetical protein	NA	NA	NA	NA
WP_089580209.1\|4352719_4352974_-	hypothetical protein	NA	NA	NA	NA
WP_096549119.1\|4353331_4353685_+\|tail	phage tail protein	A0A1V0E5N3	Salmonella_phage	6.5e-45	75.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044314

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection