CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044334	Xanthomonas arboricola pv. pruni strain 15-088 chromosome, complete genome	3 crisprs	cas3,WYL,DEDDh,DinG,csa3	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044334_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044334_1

2531872-2531972

Orphan

Consensus_repeat	Method
GTGCAGGTGCGTCCGTCGGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044334_1

>merge|NZ_CP044334|1|2531872-2531972|CRISPRCasFinder
GTGCAAGTCCGCCCGTCGGCAGACCAGATCGCCCAGCAGGCGCTGGAGCGCAGCAGCGACATCCCTACCCTGGCCGCCGTGCAGGTGCGTCCGTCGGCCGA

>NZ_CP044334|1|1|2531872-2531972|CRISPRCasFinder
GTGCAAGTCCGCCCGTCGGCAGA	CCAGATCGCCCAGCAGGCGCTGGAGCGCAGCAGCGACATCCCTACCCTGGCCGCC
GTGCAGGTGCGTCCGTCGGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044334.1\|WP_039511134.1\|2531053_2531374_-\|DUF4156-domain-containing-protein	unknown	unknown	gnl\|CDD\|372679
NZ_CP044334.1\|WP_003468167.1\|2519768_2519927_-\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP044334.1\|WP_039511126.1\|2534220_2534841_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044334.1\|WP_043088018.1\|2534975_2535782_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP044334.1\|WP_043088017.1\|2526999_2528703_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|225100
NZ_CP044334.1\|WP_039511140.1\|2519991_2521002_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187552
NZ_CP044334.1\|WP_043088019.1\|2536217_2537558_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP044334.1\|WP_026064544.1\|2541854_2542880_-\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP044334.1\|WP_016903994.1\|2529935_2530952_-\|3-oxoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|181732
NZ_CP044334.1\|WP_039511138.1\|2521092_2522751_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236443
NZ_CP044334.1\|WP_039511128.1\|2532892_2534116_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP044334.1\|WP_043088016.1\|2524496_2526998_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|368155
NZ_CP044334.1\|WP_039814173.1\|2523068_2523452_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NZ_CP044334.1\|WP_039511148.1\|2523597_2524500_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|179147
NZ_CP044334.1\|WP_039511130.1\|2532256_2532733_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NZ_CP044334.1\|WP_039511136.1\|2528699_2529863_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP044334.1\|WP_016903394.1\|2542895_2543411_-\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP044334.1\|WP_043088020.1\|2537542_2538985_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP044334.1\|WP_043088021.1\|2539031_2540759_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP044334.1\|WP_016904049.1\|2541105_2541702_+\|Ax21-family-protein	unknown	unknown	gnl\|CDD\|275096

Protein	Function_ID	Function_description	E-value
NZ_CP044334.1\|WP_039511134.1\|2531053_2531374_-\|DUF4156-domain-containing-protein	gnl\|CDD\|372679	pfam13698, DUF4156, Domain of unknown function (DUF4156). The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.	4.23923e-11
NZ_CP044334.1\|WP_003468167.1\|2519768_2519927_-\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00222793
NZ_CP044334.1\|WP_043088018.1\|2534975_2535782_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	4.26493e-05
NZ_CP044334.1\|WP_043088017.1\|2526999_2528703_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	3.47297e-45
NZ_CP044334.1\|WP_039511140.1\|2519991_2521002_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187552	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs. Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.82366e-82
NZ_CP044334.1\|WP_043088019.1\|2536217_2537558_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	5.1171e-176
NZ_CP044334.1\|WP_026064544.1\|2541854_2542880_-\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	1.64522e-179
NZ_CP044334.1\|WP_016903994.1\|2529935_2530952_-\|3-oxoacyl-ACP-synthase-III	gnl\|CDD\|181732	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
NZ_CP044334.1\|WP_039511138.1\|2521092_2522751_-\|AMP-binding-protein	gnl\|CDD\|236443	PRK09274, PRK09274, peptide synthase; Provisional.	0
NZ_CP044334.1\|WP_039511128.1\|2532892_2534116_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.27526e-21
NZ_CP044334.1\|WP_043088016.1\|2524496_2526998_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|368155	pfam04851, ResIII, Type III restriction enzyme, res subunit.	3.98524e-09
NZ_CP044334.1\|WP_039814173.1\|2523068_2523452_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	2.09188e-19
NZ_CP044334.1\|WP_039511148.1\|2523597_2524500_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|179147	PRK00870, PRK00870, haloalkane dehalogenase; Provisional.	1.63479e-47
NZ_CP044334.1\|WP_039511130.1\|2532256_2532733_+\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	8.03507e-80
NZ_CP044334.1\|WP_039511136.1\|2528699_2529863_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	2.94441e-57
NZ_CP044334.1\|WP_016903394.1\|2542895_2543411_-\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	2.82576e-69
NZ_CP044334.1\|WP_043088020.1\|2537542_2538985_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.8977e-31
NZ_CP044334.1\|WP_043088021.1\|2539031_2540759_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP044334.1\|WP_016904049.1\|2541105_2541702_+\|Ax21-family-protein	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	1.72082e-106

>NZ_CP044334.1|WP_039511134.1|2531053_2531374_-|DUF4156-domain-containing-protein
MRVLMLSVLVATTATACTWVPIEQSGKGVQVLPAGPVPAGCQQQGEVVVSVKSKVGFYNRNPLRVQEELETLARNEAPGANANTVQAQSQPADGSQRFNAFRCPPR
>NZ_CP044334.1|WP_016903994.1|2529935_2530952_-|3-oxoacyl-ACP-synthase-III
MLFQNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIRTDVLGDVAGIHARRLWDQDVQASDAATQAARKALLDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARTELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFLAAKQAMGWAVDELDQFVIHQVSRPHTASFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALMGIGSGLNCSMAEVVW
>NZ_CP044334.1|WP_039511136.1|2528699_2529863_-|Fic-family-protein
MSEAGMESVSKFIAELPYNDLPLLPPAGDIETRSLLKACINARTALAELKQATALLPNPTVLINTIPILEAQASSEIENIVTTTDELFRYAEDQDKAQKPATKEALRYRSALYEGFQSLQQRPLCTDTSVVVCSRIKAVQMQIRRVPGTALANDQTQQIIYTPPVGETLLRDKLANWERFIHDNTDVDPLIRMAVAHYQFEAIHPFTDGNGRTGRVLNLLMLIEQGLLDLPVLYLSRYIIRHRSDYYRLLLDVTRHGNWAEWIHYMLAAVAETAAWTTAKIQAIRGLEAQARDYIRDQATKAYSRELVDVIFNQPYCRIQNVVDMVGVTRQTAARHLKELADIGVLHDQRQGKEKLFLHPAFLRLLSNDDNQLPAYRMPARNVEPNT
>NZ_CP044334.1|WP_043088017.1|2526999_2528703_-|site-specific-DNA-methyltransferase
MTKKYDHLDRQTLIGLLQRRDAERQLGLVWERDEIEADQALNDDFVALSLDAGLSHGEAPWDNLIIEGDNYDALRALRMTHKGAIRCIYIDPPYNTGNKDFVYNDHFVDKTHRFRHSLWLEFMYRRLQLAKELLADDGVIFVSIDDNEVFRLGMLMDRVFGEDNKAGIVIWKNVTDNNPSRIVTEHEYIFAYCRKIESCSSVWKSSDIAVKNLLLEKERDILGAGLTESELQSEYTLWFRSVKDQLTPLDNYKFIDKGGIYAGSRSVHNPGKEGYRYDVIHPVTGKACKQPLMGYRFPKETMRELLEGDRILFGEDERKLIEIKTYVSEYKQKLASVVDLDGRAGANEVKSIFEDKKVFNNPKPVQLLKDILSYVTSDQDTVLDFFSGSGSTAHAVAKLNAEDGGNRKFILVSSTEATEDTPDKNLCRDVCAERVRRVLGGYTNAKGQPVEGLGGGFAYLRTRRIPKHRLALKLDHAEVWHALQLLHSRPLSPWSGGGFVSDGELAYLADFQAAHVEQLREWLRTRTAAVAVVYTWSTERLNGLLGETVADLSLLPLPHHLRERFGR
>NZ_CP044334.1|WP_043088016.1|2524496_2526998_-|DEAD/DEAH-box-helicase-family-protein
MPMPLKEFQTVICDGIVAQFGEVRALYRQIAAAAPDRIDEARRKDAAIVLQAPTGAGKTRMAIEVMRRLSVEERVLWFWFAPFTGLVEQSRKVLTHQAPELAMLELDADRQLDAVRGGGVFVVTWASLAARKAESRRARQRGDAGMSIDDVIAMAREQGLRIGCVVDEAHHGFQRETLARAFFCDVLKPDYALLMTATPRDTDMKAFERATGYFVGEPADWASVSRADAVDAGLLKRGVRMVRFIARDGDTAQLVDFEHLALRECVQMHRTIRKTLVGVDIALTPLMLVQVPDGKVAQEAARTYLVEQLGFDATAVRVHTAAEPDPDLLLLAQDPTVEVLIFKMAVALGFDAPRAFTLAALRGTRDPSFGVQVIGRIMRRHALLQAQMDALPVLDHGYVFLANSESQEGLLLAGAQINTLTKQAPELGTQTVVTMIGDGASLQVVRSGEPLSLLVSRAGVHVLDAEAERDAVSSADTTSEVADALVGTPFAGMANATQAALEMFGGEGAWPAQAKSVAGAFVLAQENIYRYPRRHDAPDRLRGEKLPPVSADFEAGLAAHVNFSPEVLADRLRGKVQVQRLDTDLFAGHRVAEDGSDLWANLSPQAVAEKAEQIRLRLVEANDRELYRRLLERFVRAIEASGAEVPEDEELQMRQLDLLLVRRPGLLREAFKSLRQGQVLDVDVLLPAELFSDQPLRSANRGLYGVFPAGLNQDELAIAERLDASTQVRWWHRNQPKSGIGLYRWDEGDGFYPDFVVSVAERSAPGIALLELKGDHLWGKPSEVDKSAAIHREYGAVFMVGRKRGERDFFYLRELGGRLERAGSFDLDRMRFT
>NZ_CP044334.1|WP_039511148.1|2523597_2524500_-|alpha/beta-fold-hydrolase
MNYPGYPFTPQRLEVRPGIAMSYLDEGPRDGEVVVMLHGNPSWSYLWRHLVSGLSDRYRCIVPDHIGMGLSDKPDDAPDAQPRYDYTLQSRVDDLDTLLRHLGITGPVTLTVHDWGGMIGFGWALSHHAQVKRLVITNTAAFPLSPEKPMPWQIAMGRHWGPGEWFIRTFNAFSSGASWFGVSRRMPAEVRRAYVAPYDNWRNRISTIRFMQDIPLSPADQAWSLLERSAQALPSFADRPAFIAWGLRDICFDKHFLAGFRKALPNAEVTAFDDANHYVLEDKHEVLVPAIRAFLERNPL
>NZ_CP044334.1|WP_039814173.1|2523068_2523452_+|YkgJ-family-cysteine-cluster-protein
MAHPCLTCGACCAYFRVSFHWSETDPALGGRVPIELTDALRTHERVMRGTSQSQPRCIALDADIGRYSRCSIHDRRPSACAAVPASLEFGQRSAQCDKSRLAHGLHALTDADWLGVDEAQRNPLPPL
>NZ_CP044334.1|WP_039511138.1|2521092_2522751_-|AMP-binding-protein
MTTTTLCNIAATLPELARERPEQIAIRCPGRRAANGFAAYDVTLSYAELDARSDAIAAGLALHGIGRGARAVVMVRPSPEFFLLMFALFKAGAVPVLVDPGIDKRALKQCLDEAQPQAFIGIPLAQLARRLLRWARSAKQIVSVGGRYGWGGVTLARVERDGAGAGSQLANTGPDDVAAILFTSGSTGVPKGVVYRHRHFVGQIELLRNAFGMQPGGVDLPTFPPFALFDPALGLTSVIPDMDPTRPATADPRKLHDAIDRFGVTQLFGSPALMRVLADHGQPLPNVRLATSAGAPVPPDVVAKIRALLPEDAQFWTPYGATECLPVAAIEGRTLDATRAATEAGAGTCVGQAVAPNEVRIIAIDDAAIPEWSGARVLAVGEVGEITVAGPTTTDTYFNRDAATRIAKIRERNADGSERIVHRMGDVGYFDAEGRLWFCGRKTHRVETATGPLYTEQVEPVFNVHPQVRRTALVGVGAPGQQQPVLCVELQPGVAASAFAQVETALRALGAAHPHTAGITRFLRHSGFPVDIRHNAKIGHETLAIWAAQQRG
>NZ_CP044334.1|WP_039511140.1|2519991_2521002_-|NAD-dependent-epimerase/dehydratase-family-protein
MRILVTGGGGFLGQALCRGLIARGHEVVSFQRGDYPVLQSLGVGQIRGDLADPQAVRHAFAGIDAVFHNAAKAGAWGSYDSYHQANVVGTQNVLDACRANGVSRLIYTSTPSVTHRATNPVEGLGADEVPYGEDLRAAYAATKAIAERAVLAANDAQLATVALRPRLIWGPGDNHLLPRLAARARAGRLRMVGDGSNLVDSTYIDNAAQAHFDAFAHLAAGAACAGKAYFISNGEPLPMRELLNRLLAAVDAPAVTRSLSFKTAYRIGAICETMWPLLRLPGEVPLTRFLVEQLCTPHWYSMEPARRDFGYMPQVSIEEGLQRLRSSSSNDIAITR
>NZ_CP044334.1|WP_003468167.1|2519768_2519927_-|DUF1328-domain-containing-protein
MLHYAIIFFVIAIIAAVLGFSGIAGAATNIAWILFVVFLILAVISMFRRGKV
>NZ_CP044334.1|WP_039511130.1|2532256_2532733_+|tRNA-(cytidine(34)-2'-O)-methyltransferase
MSAPVLDVILFQPEIPHNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYASLQVHADLPTALAAIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPADVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWDFSGGR
>NZ_CP044334.1|WP_039511128.1|2532892_2534116_-|MFS-transporter
MRMSTPRPRGSRALEALHFSVADVQDGLGPFLSVFLQSRGWSVAAIGTVMSVGGIAGMLATTPAGALVDSTRRKRAVVVVGCLAILLATALIWLHPTSSGVVTAQIVSALAAAGIGPALTGITLGLVHARGFDHQLARNQVANHAGNMLAAVLAGWLGWRYGFAAVFVLTAAFGVLAIAAVLLIPSAAIDHRAARGLGHADGVDTLSGWRVLLTCRPLALLAITLGLFHLGNAAMLPLYGMAIVAAHAGDANALTATTIVVAQATMVGVALLAMRWIRVHGHWWVLLVAFMALPLRALVAASLIHGWGVFPVQILDGLGAGLQAVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSPALGGWLAHAFGYRFAFLALGGIALLAVALWAGCRGMLQAATDAQAMQ
>NZ_CP044334.1|WP_039511126.1|2534220_2534841_-|hypothetical-protein
MHWVDPDFLPETRGTLARFLLNPKADIDGLLLTDGTEVHTPPHLSAALLKALKPGSTLSVRGLKPRDVDMLVALAIDPEGGKRIVDEGPHGPHAKPKPKPPAGKPPKPQLTQHSGTIARLLHGPHGQVHGVLLDDEVTVRFPPHAGEDFAKQLVVGKTLVAEGDTRTTPHGVLVHAHALGAKAASLKQIEHPHGPGVHKPKPKPKP
>NZ_CP044334.1|WP_043088018.1|2534975_2535782_-|hypothetical-protein
MIRQTALAFALACSVATAAAQAPTPPVAPRAPVGTPPPAPPLPPAPPAPPAPPAPVAATPVRITGTVERFMLNPNGEVDGLWLRDGTQVAFAPHLSAQLQAAVRRGDTVSVQGYRLGSLPVLRASSIRSNRGGREVVDQPPTGAMPPAPPAPAALTPLQAEGRIERLVYGPGGETSGALLSDGTLVRMPPHLALQFGDLLRAGAPLSVSGFGVATANGRAIEATQLGRDRASQRALFSPPRPDGPVPPAPPAPPVPPAAPPAPAPAPR
>NZ_CP044334.1|WP_043088019.1|2536217_2537558_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MARILIIDDDAAFLTTLQATLRSLGHTVIAVDNGADGLLRLNEGGIELAFVDFRMPGMDGIQVLRARADDPRARQVPLVMLTAYASSGNTIEAMTLGAFDHLVKPVGRADIVEVVERALASRADADADAAASEPPDDDDGLVGHSPAMRTVHKRIGLAAASDLPVLITGETGTGKELVARALHRASARANAAFVAVNCAAIPLELMESELFGHRKGAFSGATSDRIGLIREADGGTLFLDEIGDMPLPMQAKLLRFLQEGEVTPLGGRGAQKVDVRVLAATHRDLAAWVAAGQFRSDLRYRLNVVPIELPPLRERGQDIVLLAQYFLRSGEGAARTLSADAQARLLAYPWPGNVRELRNVMQRSQLLVRGHSIVAADLDDALEYDAEQPTTAAPPEGSLPEAVARLERQMIQDALAHSGGNRAEAARRLGIHRQLLYRKLDEYGLQ
>NZ_CP044334.1|WP_043088020.1|2537542_2538985_-|HAMP-domain-containing-histidine-kinase
MPRSLLRQLLLIWVVILAACVGVATMLYGLYRQTEGVRLDDARQQLTAQCARIVQRYAGASEAARSGDNGAGLAAVVVQLVLADAPGVEGGVWNLDKGFVAYAYPTYDGSDHKTDIPAAEWTTIVNTARQSAVGNKVVDFRRDGSREVVLISACPLAAGTAAWTMSRVPASTSDAWRPLAIGMLLIFAMVAVSAIALGVVVRRWSQRLQRIQQALAADTELPQIPVTGAPELDRLGAAVSDYAQRNAQALAQTRRLADELARHERLAALGRLTATVAHEIRNPIATMRLAVENEIATRQGTPDDAAHGELMLGQIRRLDGVVESLLGMVQPIRLQLETVMVQDWLASLLDPAVLPPGAPAPQLRVPDAPLQWMLDPQQLGRAVHNLLRNALQHADAGSAVTLEASARDGLLQLQVSNRGAAIADAIASQLFEPFVSGRADGNGLGLALVREIARAHGGQVRYAHADGMTHFILELPWRAS
>NZ_CP044334.1|WP_043088021.1|2539031_2540759_-|ubiquinone-dependent-pyruvate-dehydrogenase
MAKKKTLARFLAETLQSAGVERIWGLTGDSLNGLTDALREMQTIEWMHVRHEEVAAFAAGAEAAVTGKLAVCAGSCGPGNLHLINGLFDCHRSRQPVLAIAAHIPSSEIGLNYFQETHPQELFRECSHFVELVTNPAQLPEVLHRAMRAAILQQGVAVVVIPGDIALLEVDKHIPTAWPQLRQPRVLPAPEDVQQLAELLQQSEAITLLCGSGCAGAHDAVVALADTLGAPIVHALRGKEHVEWENPFDVGMTGLIGFSSGYHAMLNCDTLIMLGTDFPYRQFYPKDATIVQVDRDPSALGRRTPLQLGIAADVGETIAALLPQLQRREKRDFLDKALAHYRKAREGLDDLAVPADPGEPLHPQFVARMISQIADQDAVFTCDVGTPTVWAARYLRMNGQRRLLGSFNHGSMANAMPQALGAQSAYPGRQVIALSGDGGFAMLMGDFISLAQLRLPVKIVVFNNASLGFVAMEMKAAGYLDTGTELRNPDFAAMSNAMGILGIRVDESAQLERALRQAFAHSGPALVDVRIATQELAVPPAIKLEQAKGMGLYLLKAVMSGRGDEVIDLVKTNMR
>NZ_CP044334.1|WP_016904049.1|2541105_2541702_+|Ax21-family-protein
MKNSLLALGLLAALPFAASAAENLSYNFVEGDYVRTPTEGRDADGWGVKASYAVAPNFHVFGDYSKQNADDNDNVFESSNSDFQQWGVGVGYNQEIATSTDFVARVAYRKLDLDTPNISFDGYSVEAGLRNAFGEHFEVYALAGYEDFSKKRGIDIGDNFYGRLGAQVKLNQNWGINGDIRMDGDGNKEWSVGPRFSW
>NZ_CP044334.1|WP_026064544.1|2541854_2542880_-|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MSDSTQKIAVLGAGSWGTALAALLARHGHPTVLWGRDAAMVDTIDRTHENARYLPGIALPESLRATTDLQLAIADAGWILVVVPSHAFTETIRLIAPLRPAGAGVAWATKGFEPGSGRFLHEVARDILGPGVPLAVVTGPSFAKEVTLGLPTAITVHGDDAAFAQVVADAMHGPTFRAYTGDDMVGAELGGAMKNVLAVATGVADGMQLGLNARAGLITRGLNEMLRLAAAIGARPETLMGLAGLGDLVLTCTGDLSRNRRLGLALGRGQSLNDAIREIGQVVESVQTADEVMRQAEHHGIELPISNAVRAVLHGEITPEAGLKELLARERKPEYPQTLFT
>NZ_CP044334.1|WP_016903394.1|2542895_2543411_-|protein-export-chaperone-SecB
MSDEIINGAVAPADAAAGPAFTIEKIYVKDVSFESPNAPSVFNDANQPELQLNLNQKVQRLNDNAFEVVLAVTLTCTAGGKTAYVAEVQQAGVFGLVGLEPQAIDVLLGTQCPNILFPYVRTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRSQGEGTSLADSEPAGNA

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Crispr_ID: NZ_CP044334_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044334_2

2644489-2644601

Orphan

Consensus_repeat	Method
TTATTTGGGCACCTTCTTCCCTTGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044334_2

>merge|NZ_CP044334|2|2644489-2644601|CRISPRCasFinder
TTATTTGGGCACCTTCTTCCCTTGTGAAGATCCACCCTTCGGGCACCTTCTCCTACAAGCGGGAGAAGAGTAATGGTGCGCTGGGTTATTTGGGCGCCTTCTTCCCTTGTGAA

>NZ_CP044334|2|2|2644489-2644601|CRISPRCasFinder
TTATTTGGGCACCTTCTTCCCTTGTGAA	GATCCACCCTTCGGGCACCTTCTCCTACAAGCGGGAGAAGAGTAATGGTGCGCTGGG
TTATTTGGGCGCCTTCTTCCCTTGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044334.1\|WP_126750777.1\|2630577_2631686_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP044334.1\|WP_039510549.1\|2662682_2663843_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	unknown	unknown	gnl\|CDD\|183033
NZ_CP044334.1\|WP_039515507.1\|2642267_2643416_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|225412
NZ_CP044334.1\|WP_054590722.1\|2655018_2658369_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226233
NZ_CP044334.1\|WP_016902904.1\|2658365_2658770_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044334.1\|WP_026064417.1\|2653002_2653302_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044334.1\|WP_039515512.1\|2651793_2652816_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NZ_CP044334.1\|WP_039515504.1\|2641801_2642281_-\|DUF4411-family-protein	unknown	unknown	gnl\|CDD\|373028
NZ_CP044334.1\|WP_081327714.1\|2636770_2637244_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP044334.1\|WP_043087966.1\|2637673_2638888_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP044334.1\|WP_039515509.1\|2644621_2648488_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP044334.1\|WP_043087784.1\|2639854_2640508_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044334.1\|WP_043087786.1\|2648727_2651508_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP044334.1\|WP_016902908.1\|2661979_2662546_+\|DUF1295-domain-containing-protein	unknown	unknown	gnl\|CDD\|367862
NZ_CP044334.1\|WP_039515532.1\|2660720_2661920_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP044334.1\|WP_054590733.1\|2635258_2635819_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP044334.1\|WP_054590732.1\|2636050_2636404_-\|type-I-addiction-module-toxin,-SymE-family	unknown	unknown	gnl\|CDD\|370150
NZ_CP044334.1\|WP_043087787.1\|2639074_2639773_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044334.1\|WP_039515515.1\|2653517_2654726_-\|trans-2-enoyl-CoA-reductase-family-protein	unknown	unknown	gnl\|CDD\|237460
NZ_CP044334.1\|WP_126750744.1\|2640589_2641078_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008

Protein	Function_ID	Function_description	E-value
NZ_CP044334.1\|WP_039515512.1\|2651793_2652816_+\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	6.18768e-88
NZ_CP044334.1\|WP_039510549.1\|2662682_2663843_+\|FMN-dependent-L-lactate-dehydrogenase-LldD	gnl\|CDD\|183033	PRK11197, lldD, L-lactate dehydrogenase; Provisional.	0
NZ_CP044334.1\|WP_039515507.1\|2642267_2643416_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	1.80693e-14
NZ_CP044334.1\|WP_054590722.1\|2655018_2658369_+\|AAA-family-ATPase	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	6.5442e-23
NZ_CP044334.1\|WP_126750777.1\|2630577_2631686_+\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.92503e-26
NZ_CP044334.1\|WP_039515504.1\|2641801_2642281_-\|DUF4411-family-protein	gnl\|CDD\|373028	pfam14367, DUF4411, Domain of unknown function (DUF4411). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 153 and 170 amino acids in length. There is a single completely conserved residue D that may be functionally important.	4.26959e-13
NZ_CP044334.1\|WP_081327714.1\|2636770_2637244_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	1.62195e-07
NZ_CP044334.1\|WP_043087966.1\|2637673_2638888_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.61475e-05
NZ_CP044334.1\|WP_039515509.1\|2644621_2648488_-\|hypothetical-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	3.91723e-05
NZ_CP044334.1\|WP_043087786.1\|2648727_2651508_-\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NZ_CP044334.1\|WP_016902908.1\|2661979_2662546_+\|DUF1295-domain-containing-protein	gnl\|CDD\|367862	pfam04191, PEMT, Phospholipid methyltransferase. The S. cerevisiae phospholipid methyltransferase (EC:2.1.1.16) has a broad substrate specificity of unsaturated phospholipids.	1.82638e-22
NZ_CP044334.1\|WP_039515532.1\|2660720_2661920_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.15664e-39
NZ_CP044334.1\|WP_054590733.1\|2635258_2635819_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.46362e-25
NZ_CP044334.1\|WP_054590732.1\|2636050_2636404_-\|type-I-addiction-module-toxin,-SymE-family	gnl\|CDD\|370150	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system. SymE (SOS-induced yjiW gene with similarity to MazE ) is an SOS-induced toxin. It inhibits cell growth, decreases protein synthesis and increases RNA degradation. It may play a role in the recycling of RNAs damaged under SOS response-inducing conditions. It is predicted to have an AbrB fold, similar to that of the antitoxin MazE. Its translation is repressed by the antisense RNA SymR, which acts as an antitoxin.	2.0009e-19
NZ_CP044334.1\|WP_039515515.1\|2653517_2654726_-\|trans-2-enoyl-CoA-reductase-family-protein	gnl\|CDD\|237460	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV.	0
NZ_CP044334.1\|WP_126750744.1\|2640589_2641078_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.000536336

>NZ_CP044334.1|WP_039515507.1|2642267_2643416_-|ImmA/IrrE-family-metallo-endopeptidase
MERLKAFNPQRLQWCMADAQIDAGHLARDVGISERTLTRAMEGQTGLTFIQLQRLGKYFGRTPLFFLEQGVPEPQQIRSPQFRTILNQQHNLDQKIKRIIQLAEWQREAYIDLLDEIDAEERIQFDPPDLVGITPSSAARQAREWLGIQNESSFEQYRAAIERRGILVFRTNGYAGKWQIPSAHPTIGFSLYHSSYPIIVVRKESVEARQTFTLAHELGHLLLFRESTIDSVDSLNSHARKERLANEFAGYFLIPQASLNQIDTLGLSDEPATLEAQLQKFRRLWGVSTDTILIRLIASNRLEQIVYDEFKVWRDSRPAEESQGGNREWRHREPRHILGDTYVRAVLQALDANKLSIVKASKYLDDLKLTDLRQLERYYAGA
>NZ_CP044334.1|WP_039515504.1|2641801_2642281_-|DUF4411-family-protein
MRVLDASSALHAWDNYPIENLPTIWEWLRAELSAGRMAIPRVAMDEIGHISPDCRQWLHDIEGFNPVDVDNVIAGHAMLINGELGVQNDQYGTGVDANDVIIVATAKAKGFVLISNESRQPSLPANKKKYKIPAVCNLQPVSVPCINFADLIRVSNRVF
>NZ_CP044334.1|WP_126750744.1|2640589_2641078_-|hypothetical-protein
MISASPGEHETRELKRVDNPSEAPGEVLIWTKNIRDELRATIPVYSELDELRETIERHVKEHVENPQQPFTQEESDELRGKLDELMAKFQEMQENHELTQQEVNRLNQEIAALKANLSGYPKGTWYKTAASKLWLAVSKVGTSKESRQVISKVAHKMLGLDQ
>NZ_CP044334.1|WP_043087784.1|2639854_2640508_-|hypothetical-protein
MISEKTVELNLTTEFINWLSHQHNTLYFALGPTQAQEAQWGFDAGVFGNSTGALIQYKRAYVNGSVWEWRLNRTKAKDQLFRLQQLEAAGHAVFYAFPYFHTLSQLQTNRRRLLLHTFWFKPSQIVPSGGPNGHHEVRYDSTTKKWSVHSEEGIEMPPPMSLGEVISAFDNPENNLAALAEAFNLIVVGPEDTLIERQEEHDNSALSGICIVGRGDA
>NZ_CP044334.1|WP_043087787.1|2639074_2639773_-|hypothetical-protein
MFDALHPTKREMMSYGDYLKFALDLNCARPNDAPAVRCPVCRRAMKARAGQTKADGHFYHDDSIFCPTKDPASRPYLKLTPTCQDAAVIQENRKFGMANLELIYARLKSIAPYLDFKEFIEILKEAKRLNIYGYANLIATDLPYVYVTLINFLPSASYQKIRKLKFCFFYEEKIHSFEELWIKKGFSSDLFRISYRNGATQKVTKIDTTTGYLSEPPATMTDKQKKWCYDVL
>NZ_CP044334.1|WP_043087966.1|2637673_2638888_+|IS4-family-transposase
MRASEVLQKCLSNSLSGMHALRQRSLLRAVEALLHGGRLTLIDLARAWPGATRVRAPLKACDRLLCNRRLYAERSVVERDMAHWLLRGEQPVIVIDWSDLKPDKSWCLLRAAVPVGGRTLTLLDMVVSGKQQGSPGAEKRFLQQLRALIPDDVRPILVTDAGFRTPWFRAVSAMGWDWVGRLRGRTQVKPQGAPDDAAQWIDSRRLHALASNRAHELPPMQANRSDPLDCRLVLYAKTRQGRQQRNRRSPAKVSRASSSLKAAAREREPWLIVASPQLQAPSAKQLVNLYARRMQIELAFRDLKSHRYGQAMEDSLTRRGERLQILLLLNTLATFASWLAGLGCEATGIARWLAPRSSTRKLYSTLRVGREALVRHWPMEPVSRWLDRLRTLHDTVREQMTLVL
>NZ_CP044334.1|WP_081327714.1|2636770_2637244_-|nuclear-transport-factor-2-family-protein
MSRSITAFFVFSLVLATGPLHGQNVTERTKPIAVPSIELPHELDRVLRDYERAWRKGDAGALAALFAEDGFLLQSDHPPIRGRTAIQAAYEGSSGGPLRLRSIGFSAEDKIAYIIGAYGYGDAPGDIGKFTLTLHRAPGKPWLIFSDMDNLNASAKR
>NZ_CP044334.1|WP_054590732.1|2636050_2636404_-|type-I-addiction-module-toxin,-SymE-family
MRRPTSSPKPARKRATVPPPTEIGWHSLDPSIPPRPYLERTPIPEPRPDPNKPRRPGHPRAPQHCTVGYGYYPDSHQRIPTLRLRGRWLEQLGFTIGSKLHIRMRNGELVVTVAPAE
>NZ_CP044334.1|WP_054590733.1|2635258_2635819_-|RNA-polymerase-sigma-factor
MSGYTRVRHTTRWRVREEPAAGRARFDQAIGLLHADLLAYMRRRLRDRDTADDLTQETLLRLLGYRDAPDIGDYALLMYRIAHNVVLEHWRTRHRRHANAHVALDLIAQLAADGAHVDQIADARRILQHLHTHTLPALPPRCRQAFILNRIDGLTYPQVAAAMDISIKMAEKHISRALAACRAIVS
>NZ_CP044334.1|WP_126750777.1|2630577_2631686_+|IS3-family-transposase
MRKSKFTESQIVATLKQVEGGRQVKDVCRELGISDATYYVWKSKYGGMEAADVQRLRDLETEHSKLKRMYAELAMENHALKDVIAKKPVDPAHKRPLLAWLIEQHGWSERRACSVVGVARSTMRYQRRPDRDDEVIALLSELAERFPERGFGKLFQIIRRRGHVWNHKRVWRVYCLMKLNQRRRSRRRVPARHPQPLACGDRPNAGWSIDFMSDALWDGRRFRTFNVIDDFSREALAIEVDLNLPAARVIRTLERIAAWRGYPDKLRLDNGPEFVALALSEWAERKGIALDFIEPGRPMQNGFIERFNGSYRRGVLDMHIFRTLSEVREQTEHWLADYNQQIPHDSLDGLTPAEFREQHQPQTSSFSWH
>NZ_CP044334.1|WP_039515509.1|2644621_2648488_-|hypothetical-protein
MSVSKFLLGMLCLIALPVSAATTTAPELLFRVSADRDLQADAARGDGVPNFRDKITLVPTGKRGNAIEWADDGVLSWNAPGNLYTQRGTLGFFWRARYPVGEAPFVIFRVGYADHTSWDMAWLRIDWNGHGFDAFVTDANLARTRVSFKLDKNPTASDWTHLAFAWDETRGVRLYVDGKEAARVDCGAPCANGSALDFDAALDQFGLAGRVMSPHQVQSRYNFLRGSDFDEIRIYDRMLDASGAAALARLQEPATAEAPTGNAQHAAFLHRFGWDNGHAPPLLSAPVTRIRKVEFADARDLKQWMWKATDGIAETTWPGVYNRSRLPGRDDYFQLPDWNTYVEGGKALDLTLPNEPFNRIELRGAAYGQASYAAPNAQAQPLFARSQGVVRSVDQFPERRGGTLRFANTAQETPIQEIWAYNVQPGEVPKGSAQLSYTVRSDIQPDYDNLAPLRDVIAGRYPPGERQTVIALPTKAPARKRPSDKAAAGAQQPIVHILVPSSLGNPPPDQALMRSWSYGWENMHDGLDGIAITLPALNLPATHNGSIPLNIRIKDPIWPARDMIDVSVAVTPGQARTLWLDLRDRILSNDSLMLSIAAAAPGFNANALDGTQLQLVFKPRAEAIKEHVADRFNQVKDNWGFLVEEHTTSKRQLLYKRLDADITDLLRVDPGHALGRQYWNDISYANQGTLPVDMPTVPKGVPAWAFWQLQDLSATRRYIRWWIEQRQVAYGDFGGGISDDSDLVQQWPGVALMGVDPDMLNASMLALSDANYRNGMFTNGLSTIETDELHSYEEGINLNSALLYLNWGDPRTVERLMETVKAFDTIIQVNPQGHLLFASNWFGGRKVYREPNWQWQKPYSFPIVHPAILLGGYNADPNSRRIVTGLADGYLAHAYTNAKGNWALPNEINWQTGKTRGGELFEGSGGADTLHTFWAAYRFTGEQRYLKPIDYRVANSGPNGLSLLNENFLDVMGKRNDWSGKLIDAANKDDDSAPDFPHHVAWEQTGNLEYLAAIYRSEAREKLQNFYMNTEGHWWSDRVESPTVNLQRARLGGVALKRNQTYPGHTVSWRFNDPEAATQVAIAIPAPQQDRFTVIAYNTSNKAQRASMTGWNVAPGQWRITQGVSKGNDGKLDSAGKTQEVAFEKSAAIDIDFPAGRTTVLQLERIAATTPVELRPDLGIGHGDVRVTADAIEVTVHSLGHADAPAGFVVLEDARGKELARGAFPALAAPRDLQPITTQVRLPLTNAANIKAAQLRVITEGDVAEITELNNRLSLPTPTSAGTAKNTQ
>NZ_CP044334.1|WP_043087786.1|2648727_2651508_-|TonB-dependent-receptor
MQLRTTSRKTPVTLLALSIGLALSGHLAAQETTQAPAEPAVDLDTVTVTGYRASVEKALDIKRGEAGVVDAIVAEDIGKFPDLNLAESLQRIPGVVITREAGEGRAISVRGLGPEFTRVRINGMEALTTVGAGDQSGGTNRGRGFDFNVFASDLFSQLIARKTASADVEEGSLGATVDLRTARPFDYNGFTFAASGQAAYNAMAEKANPRVAALIANTWADNTFGALLSVAYTEREVLEEGANTGRWANGPSNGNFSAASPYAAARSADVYHPRFPRYTQQIHDQQRLGVTGSLQWKPTDRTTLSLDALYSKIDAKRDEHYIEAISFSRNRDGLTPRRPERDGKPGTIVRNGEIRNNALVYGEFDNVDIRSENRHDEWNTKFTQVSLDLEHRFNDDFSIDARVGTSRSAHENPVQTTIIMDKYDVDGYSYDYRGNSRAPVLNYGIDPTNPAGWELAEIRLRPQSVDNDFDTGQIDFNWNISPGFRLKGGVLAKNYSFSTVELRRANELSVPTFANGSTIVPADLTEQAGLKGINGSPSSWVVPNLDAVADLFGIYSNSGTFAVAPRVNNSRSVEEKDRGVWLMGEFSTDLGAIPLSGNFGVRYVRTEQESTGYALINNAPALTTVGRKYNNTLPSFNLVAELAPDLLLRLGAAKVMSRPGLGSLTPGVTVAVAGGARTVAGGNPDLDPIEATNVDLGLEWYFNEGAMLGVGLFYKDIESFIQTAREVRPYSSSGLPASLLEGTGATVNDDFAFSIPLNTPGGELKGVEANYTQPFTFLPGKWANLGVQLNYTWVDSQIQYLASSGAPVMKNDLLGLSRSSWNATLFYEGESFAGRVSATNRDDYLTQAPGAETGFNVDGVHGMTGTTILDASLRYKISKQLELSLEGINLTNEASDEWVSSPRTGQLPLQYAETGRQYLLGLRYKF
>NZ_CP044334.1|WP_039515512.1|2651793_2652816_+|sugar-kinase
MSRARILCFGELLLRLGAPGHELLLQQPRLDVHCGGAEANVGVSLAHFGHDVAMVSTVADNPLGAAVLGELRRHDVDTRHVRRVDGRMGLYFLTTGAIHRPSEVVYDRADSAFALAPADAYDWPALLDGVQWLHLSGVSPALGADVAQATLAAARAARAAGVKVSFDGNYRPKLWQRWQGDARGILHQLFACADVVFADYRDIGVVLGGEFPQDTLEARVEAAAQQAFAAFPQLQLMACTQRVAHNVDHHSLGALLVPRSGAVARAPSEELSPIIDRIGGGDAFAAGVLHGLIEGWSLDDTVRFGLAAGCLKHSIPGDFNPLSVADVQACVGDARFDVRR
>NZ_CP044334.1|WP_026064417.1|2653002_2653302_-|hypothetical-protein
MDKLIAHLLLAFLVSAVCAVLLRVMRVHFALKATANFAITTAVVCTAVMQDGSAPPWQDALLIASFFSVPASVGVVLVSAVMAWVANKRRARGRRKAAI
>NZ_CP044334.1|WP_039515515.1|2653517_2654726_-|trans-2-enoyl-CoA-reductase-family-protein
MIIHPKVRGFICTTTHPLGCERNVLEQIAATRARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGSPSKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAREKVIELIKTEMGGQVDLVVYSLASPVRKLPGTGEVKRSALKPIGNTYTATAIDTNKDTIIQASIEPASEQEIEDTVTVMGGQDWELWIDALEGAGVLADGARSVAFSYIGTEITWPIYWHGALGKAKVDLDHTAQRLNARLAKRGGSANVAVLKSVVTQASAAIPVMPLYISMVYKIMKEKGLHEGTIEQLDRLFRERLYREDGQPAEVDAENRLRLDDWELRDDVQDACKALWPQVTTENLFQLTDYAGYKHEFLKLFGFERDDVDYDADVDPDVKFDCIELG
>NZ_CP044334.1|WP_054590722.1|2655018_2658369_+|AAA-family-ATPase
MSLRSERVTQLGSVPRFRLGPLLVEPERLALIDDGQTIALEPRMMEVLIALAERAGEVVSAEQLLIEVWHGSFYGDNPVHKTIAQLRRKLGDDSRQPRYIETIRKRGYRLLPKVVFPDDYRGAVMGTQVWGHGSPYVGLQAFDPAHAEVFFGRSHAIAQVLGAMRAQLHSQRGLVLVSGASGCGKTSLLRAGVVPLLAQPGGLDSLEAIAVAYCNLAQCRGGDVLDTLARALGDWTAGGRAVFSPAQMAALPEWLQRPAPLHAAIGEAMRQRAPARDSAQTQRHLLLVIDHAEALVATPGITDADRAALAAALQALCSSAQVAVLMLTRSDFYPRLIDALPQIVELKRGDGHVDLLALRDGEIGQIIRVPAAMAGLRFEEDRDSASRLDDVLRDATARQPDALPLLQHLLHALHAQRSDDGLLTFAAYRALGGLEGALAHHAEHTFRALPAAAQAALGEVLSLLSVIHPDSDAVTARRALWSALPAHGAARVLVDAFVQARLFVSELVAGEPGFAVAHEALLRQWPRAAEWIHENRRLLQARKRLQLAAQRWAAEGRRSDHLLNSGRPLSEAREAARRMPQDLDALDHAFLHACERSQRRRRGLYAAAATLLVVLASASMLLGWQARQAQQVAEQRRDQAQQLVSYMLGDLAEQLRTVGNLKLLDSVGSRALRYLEDLPSASMQTGDLINHARALRTTGEVLMNQGKLDEAQAAFTRAAATAEQARARAPASLEAHAETGQTAYWLGDLAYRSKQLPVAQRYWSQYLAACEHLVRAAPQDPHWQLELSYALNNLGTLAKEQGRTGAAIGLFARSIALKRQLLARTPDNAALRYELVDSLSWLSLAQEMQGSLAPAEQGYREQIAMLRVLVEHDPDAHAWRRRLAGSLIRVSNLALARGQLHQAQTDAQDSLRMLQALVALQPDNVAWRRDLAHADAQIGWMAALDGQPELAVRHLERARQTMAGLLTQAQPLPEWQWLDAIIALRLERVQRTRAGDHADGLASIVAQLDALHRARPDDLLGLAALAQALVWQGEQQAAAGDAAGARAAWQRAVAVLGKDIGNSRDKNLLDPWIRAQVHLGQRSAVTQQLGWLYHAGYRHPGFVSLYAPLFKEQDSS
>NZ_CP044334.1|WP_016902904.1|2658365_2658770_+|hypothetical-protein
MTDFKIKLTVARVGFGGNTGAGEYFYSFAPDLLIVDKHDKASTLLYYFDEDVVPRHFKIRSLLSSDALKQIGQPTISPDGRSVQVTNANSVPTLIFLTIIVEDESRKDKKTWFSCDPQVGNDPQINPQETPPRP
>NZ_CP044334.1|WP_039515532.1|2660720_2661920_-|sensor-histidine-kinase
MAGAAGHRSHLPEVTFCTRTIAEWPRGRQHRRMHSSPSHLSHPLRLAGAFTIAAVALSFMPDASPQGAWRWGVLAGFTALFLLHTVLPSLHALRTAATLLQAVLALLLVWMEPRAGTAPVLLVMLVAQAGMTWPPVRVLLLALALNAGMYALLVQAGFERPWLIVGIYAGFQAFAALTAHYARSAERARDALAYVNADLLATRALLADSARDAERLRLARELHDVAGHKLTAMRINLRLLGADPALARRDEVAVVEQLSAELLADIRNVVQSLRDDQGLDLQTALRALAAPFPRPALRLQIDPAVRITDARVAELLLRLVQEALTNAVRHADANEVAVHLQCVDAQLQVDICDDGRRAERIREGNGITGMRERLAALHGQLELGRTPTGGMHLMARLPA
>NZ_CP044334.1|WP_016902908.1|2661979_2662546_+|DUF1295-domain-containing-protein
MSASSLFLALTLVWGGYELLLSRRRRANDGGAHDQGTLQQLWWVLSVAVAIAVALAYSGLARWPQGWYAPLQWAGCALIVSGLALRVWAIQVLARWFTVDVTIQPDHQLVRSGPYRWLRHPSYTGALMAFYGLALGMGNGLSVAAIVVPVTWVFLHRIRIEEAALQRAFPLAYPAYAAQSRRLLPLVW
>NZ_CP044334.1|WP_039510549.1|2662682_2663843_+|FMN-dependent-L-lactate-dehydrogenase-LldD
MIISAASDYRAAAQARLPPFLFHYIDGGAYAEHTLRRNVADLADIALRQRVLRNMSDLSLGTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGLLGRPHDLGNISTYRGSPTGLQDYIGWLGANFDPSIAWKDLEWIREFWTGPMVIKGILDPDDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGQLKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGVENLLTLIEREMRVAMTLTGTHSIAEISSDALSRVTRENAGAP

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Crispr_ID: NZ_CP044334_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044334_3

3012114-3012191

Orphan

Consensus_repeat	Method
CTGTCGCGCGCGAGCGCGCTCCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044334_3

>merge|NZ_CP044334|3|3012114-3012191|CRISPRCasFinder
CTGTCGCGCGCGAGCGCGCTCCTACGGGCGATGAGGCCTTCCCGCCGGCACCCTGTCGCGCGCAAGCGCGCTCCTACG

>NZ_CP044334|3|3|3012114-3012191|CRISPRCasFinder
CTGTCGCGCGCGAGCGCGCTCCTACG	GGCGATGAGGCCTTCCCGCCGGCACC
CTGTCGCGCGCAAGCGCGCTCCTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044334.1\|WP_126750643.1\|3005164_3006784_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|199835
NZ_CP044334.1\|WP_039513556.1\|2999825_3003686_+\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_CP044334.1\|WP_016903873.1\|2998047_2999829_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_CP044334.1\|WP_039512764.1\|3019413_3019782_+\|L-rhamnose-mutarotase	unknown	unknown	gnl\|CDD\|377501
NZ_CP044334.1\|WP_039513553.1\|3003971_3004406_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044334.1\|WP_126750644.1\|3004425_3004866_+\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|223828
NZ_CP044334.1\|WP_016901778.1\|3017179_3017929_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP044334.1\|WP_039512776.1\|3008205_3009588_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340890
NZ_CP044334.1\|WP_069686681.1\|3015820_3016405_-\|manganese-efflux-pump-MntP-family-protein	unknown	unknown	gnl\|CDD\|224882
NZ_CP044334.1\|WP_039512753.1\|3026064_3027696_+\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350116
NZ_CP044334.1\|WP_126750642.1\|3009650_3012005_+\|NdvB-protein	unknown	unknown	gnl\|CDD\|213064
NZ_CP044334.1\|WP_039512770.1\|3012274_3015724_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|271357
NZ_CP044334.1\|WP_039512761.1\|3020250_3021570_-\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440
NZ_CP044334.1\|WP_039814795.1\|3022052_3022910_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP044334.1\|WP_039513559.1\|2995119_2997870_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP044334.1\|WP_043087732.1\|3024704_3025712_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381378
NZ_CP044334.1\|WP_104567303.1\|3023068_3023971_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187626
NZ_CP044334.1\|WP_039512778.1\|3007462_3008047_-\|gluconokinase	unknown	unknown	gnl\|CDD\|225804
NZ_CP044334.1\|WP_016903869.1\|3004846_3005074_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044334.1\|WP_039512767.1\|3018109_3019417_+\|L-fucose:H+-symporter-permease	unknown	unknown	gnl\|CDD\|340952

Protein	Function_ID	Function_description	E-value
NZ_CP044334.1\|WP_126750643.1\|3005164_3006784_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|199835	cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase). This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.	4.42577e-41
NZ_CP044334.1\|WP_039513556.1\|2999825_3003686_+\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP044334.1\|WP_016903873.1\|2998047_2999829_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	5.54742e-154
NZ_CP044334.1\|WP_039512764.1\|3019413_3019782_+\|L-rhamnose-mutarotase	gnl\|CDD\|377501	pfam05336, rhaM, L-rhamnose mutarotase. This family contains L-rhamnose mutarotase which is a glycosyl hydrolase that converts the monosaccharide L-rhamnopyranose from the alpha to the beta stereoisomer. In Escherichia coli this enzyme is the product of the rhaM gene (also known as yiiL). The tertiary structure has been solved, in complex with L-rhamnose, and the catalytic mechanism determined. His22 is the proton donor. The enzyme naturally exists as a dimer.	7.43235e-36
NZ_CP044334.1\|WP_126750644.1\|3004425_3004866_+\|3-dehydroquinate-dehydratase	gnl\|CDD\|223828	COG0757, AroQ, 3-dehydroquinate dehydratase II [Amino acid transport and metabolism].	0.00153205
NZ_CP044334.1\|WP_039512778.1\|3007462_3008047_-\|gluconokinase	gnl\|CDD\|225804	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism].	1.7569e-60
NZ_CP044334.1\|WP_039512776.1\|3008205_3009588_+\|MFS-transporter	gnl\|CDD\|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.0096e-130
NZ_CP044334.1\|WP_069686681.1\|3015820_3016405_-\|manganese-efflux-pump-MntP-family-protein	gnl\|CDD\|224882	COG1971, COG1971, Predicted membrane protein [Function unknown].	3.03703e-61
NZ_CP044334.1\|WP_039512753.1\|3026064_3027696_+\|family-43-glycosylhydrolase	gnl\|CDD\|350116	cd09002, GH43_XYL-like, Glycosyl hydrolase family 43, beta-D-xylosidase (uncharacterized). This glycosyl hydrolase family 43 (GH43) subgroup includes enzymes that have been annotated as having beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	0
NZ_CP044334.1\|WP_126750642.1\|3009650_3012005_+\|NdvB-protein	gnl\|CDD\|213064	cd11748, GH94N_NdvB_like, Glycoside hydrolase family 94 N-terminal-like domain of NdvB-like proteins. The glycoside hydrolase family 94 (previously known as glycosyltransferase family 36) includes cellobiose phosphorylase (EC:2.4.1.20), cellodextrin phosphorylase (EC:2.4.1.49), chitobiose phosphorylase (EC:2.4.1.-), amongst other members. Their N-terminal domain is involved in oligomerization and may play a role in catalysis, but it is separate from the catalytic domain [an (alpha/alpha)(6) barrel)]. The GH64N domain, as represented by this model, is found at the N-terminus of largely uncharacterized proteins, some members from Xanthomonas campestris and related organisms are annotated as NdvB (nodule development B) gene products, glycosyltransferases required for the synthesis of cyclic beta-(1,2)-glucans, which play a role in interactions between bacteria and plants.	0
NZ_CP044334.1\|WP_039512770.1\|3012274_3015724_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	4.3835e-68
NZ_CP044334.1\|WP_039512761.1\|3020250_3021570_-\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NZ_CP044334.1\|WP_039814795.1\|3022052_3022910_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	3.8332e-103
NZ_CP044334.1\|WP_039513559.1\|2995119_2997870_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.63439e-27
NZ_CP044334.1\|WP_043087732.1\|3024704_3025712_-\|aldo/keto-reductase	gnl\|CDD\|381378	cd19152, AKR_AKR15A, AKR15A family of aldo-keto reductase. The AKR15 family includes Microbacterium luteolum pyridoxal 4-dehydrogenase (PLD), Pseudomonas sp. D-threo-aldose 1-dehydrogenase (FDH), and similar proteins. PLD (EC1.1.1.107) catalyzes irreversible oxidation of pyridoxal. FDH(EC1.1.1.122), also called (2S,3R)-aldose dehydrogenase, or L-fucose dehydrogenase, catalyzes the oxidation of L-fucose to L-fuconolactone in the presence of NADP(+). It is also active against L-galactose, and to a much lesser degree, D-arabinose. FDH (EC1.1.1.122), also called (2S,3R)-aldose dehydrogenase, or L-fucose dehydrogenase, catalyzes the oxidation of L-fucose to L-fuconolactone in the presence of NADP(+). It is also active against L-galactose, and to a much lesser degree, D-arabinose.	8.21801e-108
NZ_CP044334.1\|WP_104567303.1\|3023068_3023971_-\|SDR-family-oxidoreductase	gnl\|CDD\|187626	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs. Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).	1.45718e-113
NZ_CP044334.1\|WP_016901778.1\|3017179_3017929_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.84424e-39
NZ_CP044334.1\|WP_039512767.1\|3018109_3019417_+\|L-fucose:H+-symporter-permease	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.7142e-146

>NZ_CP044334.1|WP_126750642.1|3009650_3012005_+|NdvB-protein
MAPSADGTRYALYSPTAMPNAGGFLWNRRMMLQLTCRGYATGQFMQPEPAKYAHAPLLEARNFMMPEQPYYAHHPGRFFYLKDEDSGALYSVPHEPVRATPEQFAFSAGKHDVRWRVRHDGIVVDLCVALPTDDAVELWECRVHNQSGRTRRLSLYPYFPIGYMSWMHQGGAYEPALGGIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQPPVAWDAQQMAFEGEGGLHAPSAIQAEQLGNSDAHYENPAAALQYRLTLDADAASVYRFAFGPAKDDAEIAALRARYLSEAGFAAAARDYAQYLQGGQGCAQIATPDPALDNLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDGILLVEGAELKYINQVPHTDHCVWLPIFLSAYLAETGDASVLDAVVRTHDGQALSVAERLDAAMQWLLDARDARGLSFIAQGDWCDPMNMVGWRGKGVSGWLTVATAYALRLWSCICAAHGRSAQAETFAQAVQAINADANRELWDGKWYARGITDDGVRFGIAEDVEGRIYLNPQSFALLAGTADSAQRAALLEAVREQLHTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHAAAFYLYSLYQIGEADRAWEILRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLEGLFGLVGEGDAFAIRPQLPSHWPQARVTRQFRGAQFEVTLTREPGRTHVDVEVDGTACPDQRVNGIVAGRTYQVRVRLPG
>NZ_CP044334.1|WP_039512776.1|3008205_3009588_+|MFS-transporter
MTSSPATSPASARLRWREKLGYGAGDLGLNLYWANISAFLLIFYTDTMHLPAAAVGTMILLTKIADAIADPAMGALADRTRSRWGKFRPYLLWGAVPMAVTGVLAYTTPALDQNGRMWWATISFLVMMLAYTVVSIPYSALSGVITADSSQRTSLISLRFIAAFAGTTLVNYCTLDLVAWFGAGNDALGWQRTMMLYGAVAVALFVTVALTTRERVQPPPQQRTPIRRDIADLLQNKPWCVLFVLSLIIMITIVMRGGAGVYYLKYYVQRPDLTGLFLGGYSVSLAVGAAITPVLTRHWDKRQLMTALMAVVGVLSCLMFFIPADAVWAIFALNMLIGLALGPKSPLAFSMYADSADYTEWRTGRRATAMTFAAATFSQKLGGALASAGIAWVLAGMGYVANSAQSAGSLTGIVLLLTVIPGAVALLAAWTMRFYPLDDGLLRRIQHELAARKRDEQEHR
>NZ_CP044334.1|WP_039512778.1|3007462_3008047_-|gluconokinase
MDTAAPATPASASPLAIVVMGVSGSGKTTIAQALAAHYGYRFLDADDYHSVAARAQMAAGQPLTDAMRLPWVELLAATLRDCVQAGESVVLAFSGLRGTHRQLLRRSGIPIRFVFLHAAPHVIAARLSARAGHFMPASLLDSQLQTLELPLDEADVVSVDVDATVAEVVQDAIAQLALIAPAAAHTAVPSPQSA
>NZ_CP044334.1|WP_126750643.1|3005164_3006784_-|PQQ-binding-like-beta-propeller-repeat-protein
MSSLDTQAFARSGQVWRSFGNQLPFASPTSWTTAGGGYLNQRFAPGEWKINRTTVKGLKPAWTLTTTGDISATPSVEGGTLYVPDWGGTLYSVDTQTGKPNWQAKLSDYTGNANSVTRNTPAISANSIIVGDQAAGTVLAIDKKTGKLLWKTTAEANPQARITSSPVIYGNRVYVPVSSRDWGNLDPTHTFSFRGSVVALDLNTGKKVWQFYNVPEGYTGASVWGQVAIDPISRRLYFGTGNNYNIPASVGNCVSNARAYRGSELTVQDELACMAPDNYVDSVISLNLDTGKLVWADRAQGYDAWNLSCLVAPTNGLCPNTQATNLTGPDYDFGGAGVQLFTVWRDGKAQQLVGAGQKSGIYWAFDAKTGAKVWSTQVGPGGATGGVEWGTAFDPYKSQVYVAINNSTNATYTLGPANTQSHNGGSWAALDAATGRIKWQVKVPGINRVNPNVPAGGQGSLTVSPNLLYAGSMAGNMVALDTDTGATLWNHDATGSVISSPAIVDGALYWGAGYDLFNFGTAATANQLTKFVPEASPAK
>NZ_CP044334.1|WP_016903869.1|3004846_3005074_+|hypothetical-protein
MSTSVPELRQLHYFADYEGYCDGRPVLWGQLAHSVDVPADGVLDAAGLVTALRRRAAEAHGLEAGQIRLCQVTRL
>NZ_CP044334.1|WP_126750644.1|3004425_3004866_+|3-dehydroquinate-dehydratase
MIVRGPEAAMPLVRGPQPLPRAVIRQLVQCAGDAGKTVALRACGSEQELLDALRVAGQARMEIALIDPGSCVDSVRLHRVLSALPYPFVEAHDDSVDRPERCLPDGFGQRIATVRGYCAQSYLLGLEIALEHLGCTEIQGDVHVGT
>NZ_CP044334.1|WP_039513553.1|3003971_3004406_+|hypothetical-protein
MCILILQGPQADPAQMAPIQLPECAGRALRTLACADVGGLIAGLQAAGGDAEVELVLLDSGDLSASERAQVHATALRAALDALPAPYIELHTDAAHELEPWLHPQHAPLAVVITPHDAPRAYAMSLGIAARCLPLLCAPLRAAA
>NZ_CP044334.1|WP_039513556.1|2999825_3003686_+|translocation/assembly-module-TamB
MSTPTPTPPPAPRRARFYRRRRFWVGSGLTVLGLVLLALIAVYWLLQTVAGRDVLLAQVTARLPVGATFTYGKVEGPVAGPLTLRDVDFRYQDIHFTAERVYLEPDLRPLLGRKLQLDAVQVSNASLNLGKSEEPFTLPSWPESLPQINVPLAIQADKIDVENLRITQLQQPMIVLHKVQGGLEVATGELRTRNLVVDTDMGEFRLHGDYVPNDDYRADLTATAVLPAARGRTPASLGLVARGDLDKMEVAIAGRAPAPLQASLVFTGRDDPTWAFKAVTDALDTSLLMPATNGQYAAPATPIALNLQASGKGGNADLQGSVKQGELSATLQPSHISLLDQVITVEPLVIDAFEGRAQLRGTADFRDTQNPSFRFAVNASGLRFTPTPDPATPDAPVVPVELVDARLGVAGNLKAWAAIGRATLERDGQQAALVFDSRGNDQRAQLKQVQAKTPGGSLDLTGEVGWTPELQWDVSAQLAKFDPGYFAPGWNGNLSGKVASKGRQLPAPAGGVSPGFEATADIPSLTGQLRQRALSANGKFALRGEQGEGQLQLSLGNSRITAKGKVGDQLDIAAQLQPLQLDDVLPGATGTMRGQLQVSGRRDAPDITADLVGNGLRWNDYSAQSISLRGRLPWRGSDGQLALQGTAIEAGVVLDSLRVQARGAVEALRLDADIANSMANVALQGDVRRNGERWQGQVATLRIAPAKGDAWALRQPAQFSTDGAAFTLSDTCLGAATGGALCASANWPREGMVVHGDALPLSLVQPWLPKQEGRQIYLRGELALDGSFKPRGNAWEGSFRIASPEGGIRLGETRYAAVAGNPNRGELLRYDQFSVQADFTPQQIQAKLGIGFQGAGFVDAKFNTGWDAYAPLNGELYLNMSRLYWLELVVADVVQPKGLVEGHVSLRGTRDKPLLGGDATLSNFTAEYPSMGLTLSEGKGRFDALPDGSAKITASAKSGQGTLNIDGGLSWFGTSTPLLLNIRGENVLAYNTSELRIIANPDMQFGITDNTMQLRGKVTVPEADIDLERLDRGTSVSEDVVVLDPVDPEEAPASPLDMDLAIVLGDKVNMSGFGLKGGLSGQMQIRARPGREMTANGGLDVRGRYKAYGQDLTISRGQLTWNNNIVSDPRVSLRAERKVGDVTAGIDVSGRAESPRADVWSEPAMSQSEALSYLVLGRGLSTASSDETQQVSAASAALSAGSSLIASQIGAKLGLDEAGVSESSTVGSVVGFGKYLSPKLYVGYGVSMVGSGSVLTLKYLLSRGFDIEAESSTVETKGSVNWRREK
>NZ_CP044334.1|WP_016903873.1|2998047_2999829_+|outer-membrane-protein-assembly-factor
MLKAAFALSLLCTLFVPLQAVARATIDKIEIKGLDDDADAEMIENIEVSLSLYEAVGKEQGESRLEYLLAQAERQTREALEPFGYYSPTIELAAPRTGDKVTVVITVERGEPVRVRQSHISITGWAEQDRYLGQDLKQFEPREGQVFSHPQYEASKVRITRRLAERGYFDADFTQRRVAVTRAEHAADIDLNWDSGRRYDMGKVRFDYDYFRPGLFEPLVYWDEGSYYHEGKLDRLRESLTKLDYFSTIDIQPKPEEADDQGRVPVDVKLTRAKRTVYTSGLSYGSESGAGVRGGVERRYVNSRGHKMDTQLDYAQNRKSLTTSYRVPAFRWLDGWYTASARLYDEQTEYIDLRNVKLTGSRSGQINERWSAIASINALRERWRFSSGSDFTDAVYETSTLIYPQLQVNYVNVDDRLFPRSGVSGQAFIRGGAEGAGSDTNFGQLYGQLRWFLGAGDNGRVILRGEGGTTWTSDLVAMPPSLRFFAGGANSIRGYAFREVGPRTPKPDEFALGAKNVVTASAEYEHYLKGGPWGGAVFVDSGSAFDDTPDWHTGIGFGLRWRSPVGPVRVDIAHGLNDPDSQFQLYIDIGANL
>NZ_CP044334.1|WP_039513559.1|2995119_2997870_-|TonB-dependent-receptor
MKRHLLVNAVCAALAMPSLAMAQSQGAVTELNKVTVTGSLIPRSQVETATPVFSITAQDIQRRGFKDVYDVLRSQPMATGSVQDGQFSGGFTAGAKSLSLLGLDPGFTLVLIDGRPMADYPLLYNGQSNFVDLASVPVGMVERIDVAPGNQSSIYGSSAIAGVVNIILKKHIDGVQMNYRMGTYDGGGGNNQRFQLTGGSTLGKADIVWGLQLNNQDPIYGFQRRDFDSTSDNPDPTLRYGSRIALHNTPTTYIDPGAANCDALGPLFNGSVQYDNRANRGNFCSSRTEPGYASILNKERSASGYANLTYAFNDNTQGYATLLLNRTKVEVNGGPRFWQTSSDTGGLFYNQDSQQLEGYQRIFAPEETGNLDFNNDRQTADSYNIAAGIKGGLGASNWTYDAYYARAEYRIDNRQQWPLADRIEDFFREQFLGAQQGEYYVYPIYSPNDANFYRALTPAQYRSFNDEIRTKSRTWTQNLNLQLTNTELFNLPAGAVGVAGVLQAGNQYWENPTDQRVIAGDFYQLTGTQGSGKRENWAAAFEMRVPILNTLTANLSGRYDDYKNQGGGGDSKFTYKAALEFRPIDSLLFRGNYATAFKAPDMAFSFAGDSGFFQGVNDYYRCALEEPNVPIADCTYGGTSIAGRRAGNRDLQSITAKSWGYGVVWSPSARFSVNADYYNIKIDDKVSDLSTDNLLQTESACRLGSLDISSPTCVDALSRIDRTAADAPVPNRLSNIRINPINISNEEISGVLSKATYNLATESWGLFVFDAQYNLTLKHESQQFPQDPVRDLLSEPFFSFEFRSIVNASVTWQKDAWTTTLFAERNGRTPNFVAQQSTDGYAVEGARKVGAWTRLNATLDYAVNDDISLTATVNNLANTRPPRDRTYTSYPYYNIFSYTGYGRSYMLELNWRFGAH
>NZ_CP044334.1|WP_039512770.1|3012274_3015724_+|hybrid-sensor-histidine-kinase/response-regulator
MVSSWILLLVSVGYAVLLFGVAWWGDRRPLYPERPWLRPAVYSLALAVYCSSWTFYGAVGSAVRNGIGYLPIYLGPLLLLLFGWRIIERLALIARAENTVSIADFISSRYGRSRRLAALVAVIALVGIVPYLALQYKAVAMSLEVLTGHSSAGRGILADPALYVALLMALFATLFGTRQVDATEHHRGMMLAIALESVIKLIAIVAVGLFAWVWLSDHQVPIADSARTLFEHTPSVGFVSQTLLSFLAVICLPRQFHVAVVECSDVGDIRRARWLFGAYLVIISAMVVPIASAGVALFGKGSTVVDDAVVLALPLSQGNTVLALVAYVGGFSAATGMVIVASIALATMVSNDLVMPVLLRRRGSADARAAVASRVLWIRRVAILLLALIAYGYHRSMANDTTLAAYGLMAFAAVAQFAPGVIGGLYWRGASRKGVETGMVLGFMTWIYTLLLPAATRAGWLQPEWLVDGPFGIAWLQPQQLFGMRGWDPLAHGTFWSLLINVGAMMLVSARWRPGVDERLRAAPFLDPYAQRPAVAGDWPGHVRVADLQALAERVVGERHAHRAFVDQAVLLERELQPTVVADRAWVQFTERLLAASIGAASARLVLTSLLRGSGMDLGEVVAVLDEAGQELRFNREILSTTLENISAAVSVVDPEMRLTAWNRRYQQLFGYPDGMLYVGRPVADLIRYNAERGELGEGDIEDQIDRRIRHMRAGSPHVFERTRSDGKVIEMRGQALPGGGYVTSYNDITDYKRAERALLDANENLEQRVADRSREAELAQQSKTRFLAAISHDVLQPLNAARLFASALRESHQNNEEQRHLAERVDASLRAAEELLDGLLDVSRLDAGGLRPTVEDFDASALMHELAAQYAPVASSRGLQLQVHCRPLWVRSDRRLLRRVMQNFLANALRYTRQGRIVLGMRGRGAHVELQVWDTGPGIPEHHMRQIFEEFRRYQQPFDWGEQGLGLGLSICQRISRLLDHDLSARSQVGRGSMFSILLPRVAAVPLPPVLPVAVARALPSGDSLAGLRVLCVDNDREILDGMRALLGRWQVEVITASTVDQALERAREQPDLMLVDYHLHDRLDGLDTLDALQAVATAPIAGALLTADGRDELKQLARARGYRLLTKPVKPASLRAFLSAHHDAKTR
>NZ_CP044334.1|WP_069686681.1|3015820_3016405_-|manganese-efflux-pump-MntP-family-protein
MSPFSIVLIGFAMSTDAFAAAIGKGAAMRKPQWRDALRAGLIFGCIEAITPVIGWLLGRAASSYVSDYDHWIAFVLLGALGTHMIVAGLRNDADDAEEATSEMPKRHGLLALATTGFATSIDAMAVGVSLAFLDVHIGVVAVVVGLCTFSMVTAGVMLGRVLGNLIGKRAEILGGLILVIVGSVILYEHLSGAA
>NZ_CP044334.1|WP_016901778.1|3017179_3017929_-|helix-turn-helix-domain-containing-protein
MSTEPAKYRAPALDKGLDILELLARQAQPMSMGAISQGIGRSRGEIFRMLQVLEERGYLTRDGEGDYVLTNRLFMLGMQQPQVQSISEAALPVMRRLADAIYQPCHLVAPSGDQIVVIAQMDVPSDLGLVVRPGHRRPLTHSSSGLVLFAFQQPEVQARWLDMLDASEVPFERAQFLAAAAQARNDGYAMQPSEAVVGVVDLTAPILQRGSATYTLTVPFIARRPELVGPHAALQALCAATAEISAALM
>NZ_CP044334.1|WP_039512767.1|3018109_3019417_+|L-fucose:H+-symporter-permease
MHHSDIAASPRGNLARTAMVPLLLIVSLFFLWGMANNLNDILIKQFKKAFELTDLQAGLVQSAFYLGYFVFAMPAAMFMRRYSYKAAVVLGLLLYACGAFLFYPAAQVHTYWLFLLALFVIASGLAFLETTANPLVTVLGPAEGAARRLNLAQAFNPLGSITGVLVGQHFIFSGVEHTPAELAAMAPAAREAFFAAESSAVQTPYLIIGAVVVLWAILIALVRFPTGAPESDSGVAPKRARFGELLRNRRFMFSVVAQFFYVGAQVGIWSYLIRYLQDAVPGTPEKTAATYLTISLVLFMAGRFIGTALLRYLAPARLLASFATINLLLCAVAIALPGWTGLYALVAASVFMSVMFPTIFALGLDGMHDDARKLGSSLLVMSIIGGALLTAVMGAVSDMAGIHWAMVVPGGCFAVILLFALRARRAAPVIAGAGA
>NZ_CP044334.1|WP_039512764.1|3019413_3019782_+|L-rhamnose-mutarotase
MSTRRLCYVLDLHDDPQLIAEYERWHRPSEVWPEVVASLQQAGIQELEIFRSGDRLVMLMEVGDDYDPAAKAARDAADPRIQAWEDLMWRFQKPLPGSAPGEKWREAGRIFALSAAVGAGQG
>NZ_CP044334.1|WP_039512761.1|3020250_3021570_-|L-fuconate-dehydratase
MSTIIALDTHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDAPDDLAGYGLVFTIGRGNDVQTAAVAALAEHVVGLSVEEVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAAKKPLWRYIAELSPEQLVDTIDFRYLTDALTRDEALAILRAAQPQRAQRIATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIHRCRLAREAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRMVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFDIRVFPHAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIRHGRYLAPQAAGFSAEMHPASIAEFSYPDGRFWVEDMATAKA
>NZ_CP044334.1|WP_039814795.1|3022052_3022910_-|fumarylacetoacetate-hydrolase-family-protein
MKLVRVGAPGQERPGLIDGEGRIRDLSGVIDDVAGEHITNAGLDKLRALDVSTLPLLDGELRYGAAVGQIGKFICVGLNYADHAAESGMDVPKMPILFMKATTAVTGPNDTVIIPRGSVKSDWEVELGVVIGDVARDVAVDDALNHVAGYAVINDLSEREFQLEHGGQWVKGKSADTFGPIGPWLVTRDEIADPQNLSMWLEVNGHRYQNGSTRTMVFGVAELVSHISRYMTLMPGDVISTGTPPGVGLGQKPPVYLKPGDVMELEIEGLGRQRQPVVAHPRDAA
>NZ_CP044334.1|WP_104567303.1|3023068_3023971_-|SDR-family-oxidoreductase
MVRHRTAAGRHIRRRPRRSGVRRQRTHVLSSATAGGPHLRNLFGMTVSIPATPNDRLHGKRCLITAAGAGIGRESALACARAGAQVIATDIDAAALQALAAESEAITTQLLDVTDASAVAALVAAHGPFDVLFNCAGFVHQGSILDCDEPAWRRSFSINVDAMYYTCKAVLPGMLERGRGSIINMSSVASSIKGVPNRFVYGVTKAAVIGLSKAIAADYVAQGVRCNAICPGTIKTPSLGQRVKALGGDEQAVWKSFTDRQPMGRLGDPREIAQLVVYLASDESSFTTGQTHIIDGGWSN
>NZ_CP044334.1|WP_043087732.1|3024704_3025712_-|aldo/keto-reductase
MTIARQRLGNTDVQLSALGFGAAPIGNLYAEVDEGQALAAVAAAFEAGIRHFDTAPYYGYGLSESRLGRGLAGVPRGAYTLSTKVGRCIYDDAQAAAGRDGFAVAGRRAEFDYSADGVRRAFASSLERLGTDYIDVLLLHDIGALTHGDNHANVLRQALEEALPAMAELKAAGACGAIGLGVNEQDVALEVLPRFPLDCVMLAGRYTLLEQHGARALLEQAQQRNVAILSAGPYSSGLLSDARGPGATYNYAPVDAATLQHAQRLYAACAAFEVDIGAAALQFPLAHPAVTTVVAGMRTVAEVQSAAARLQAAIAPALWQRLRDGGLLDADLPTP
>NZ_CP044334.1|WP_039512753.1|3026064_3027696_+|family-43-glycosylhydrolase
MPTTTRRDLFKVLAAGAVVAPLSPSALAGDARAACTGTPQWARGIEGRRKADLGNGTYLNPIVAGDHPDPTILKDGDAYYMTFSSFLSYPGIVLWHSTDLVNWTPLGPALRKQLGTIWALDLCKHDGRYFIYIPANPDDKGWSIFVIWADDIRGPWSDPIDLQIAAGCIDPGHVLGEDGKRYLFVNGIRKLRLRDDGLATDGQVEPAYAPWRYPDDWIVENFAPEGPKLTWHDGWLYLVTAVGGTAGPVTGHMVIAARARSVHGPWEHCPHNPLVRTQSEQEPWWSRGHATLVEGPRGDWWMVYHCYENGFRTLGRQTLLEPIEWTADGWFRATGGDLSRPLRTPARANATGNAALSGFALSDDFSSDRFGTQWRLYAPGPGEQARVHRADRSLTLACSGSSPADSSPLTCGVPDRGYVAEVTLELIGNAGGGLLLFYNHKAFVGIGVTPDTIKTYEYSEELVWARAPNTHRRIRLRLSNEAHVVTFDYSFDDGRQWIRHPTRMEMSGFHHNVFGGFLSLQLGIYAAQQGAVVLRDFRYRALR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044334_3	3.1\|3012140\|26\|NZ_CP044334\|CRISPRCasFinder	3012140-3012165	26	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	186968-186993	4	0.846
NZ_CP044334_3	3.1\|3012140\|26\|NZ_CP044334\|CRISPRCasFinder	3012140-3012165	26	NZ_CP024427	Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence	108342-108367	4	0.846
NZ_CP044334_3	3.1\|3012140\|26\|NZ_CP044334\|CRISPRCasFinder	3012140-3012165	26	NZ_CP020443	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence	118022-118047	4	0.846
NZ_CP044334_3	3.1\|3012140\|26\|NZ_CP044334\|CRISPRCasFinder	3012140-3012165	26	NZ_CP016288	Rhizobium leguminosarum strain Vaf10 plasmid unnamed7, complete sequence	179815-179840	5	0.808

1. spacer 3.1|3012140|26|NZ_CP044334|CRISPRCasFinder matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.846

ggcgatgaggccttcccgccggcacc	CRISPR spacer
ggcgatgaggccttgccggcggcgcg	Protospacer
************** *** ****.*

2. spacer 3.1|3012140|26|NZ_CP044334|CRISPRCasFinder matches to NZ_CP024427 (Paracoccus yeei strain TT13 plasmid pTT13-5, complete sequence) position: , mismatch: 4, identity: 0.846

ggcgatgaggccttcccgccggcacc	CRISPR spacer
ggcgatgaggccttgccggcggcgcg	Protospacer
************** *** ****.*

3. spacer 3.1|3012140|26|NZ_CP044334|CRISPRCasFinder matches to NZ_CP020443 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.846

ggcgatgaggccttcccgccggcacc	CRISPR spacer
ggcgatgaggccttgccggcggcgcg	Protospacer
************** *** ****.*

4. spacer 3.1|3012140|26|NZ_CP044334|CRISPRCasFinder matches to NZ_CP016288 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed7, complete sequence) position: , mismatch: 5, identity: 0.808

ggcgatgaggccttcccgccggcacc	CRISPR spacer
ggcgatcaggccttcccgcgggccgt	Protospacer
****** ************ ***  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

281327 : 292834

Xanthomonas_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039509737.1\|281327_281516_+	hypothetical protein	A0A077JGB8	Xanthomonas_phage	1.5e-24	95.1
WP_069686676.1\|281677_282652_+	replication initiation protein	A0A077JDC0	Xanthomonas_phage	3.9e-116	61.6
WP_051634090.1\|282648_282942_+	hypothetical protein	A0A1W6DXU2	Xanthomonas_phage	5.1e-11	42.4
WP_126750672.1\|283080_283197_+	hypothetical protein	NA	NA	NA	NA
WP_015471906.1\|283227_283356_+	hypothetical protein	NA	NA	NA	NA
WP_039509954.1\|283904_284729_+	hypothetical protein	Q9XJ91	Xanthomonas_phage	2.4e-34	75.8
WP_039509957.1\|284739_285060_+	hypothetical protein	NA	NA	NA	NA
WP_039509960.1\|285061_286393_+	filamentous phage phiLf protein I	Q4LAU4	Stenotrophomonas_phage	2.7e-128	55.7
WP_081327660.1\|286412_286724_-	chloride channel protein	A0A1W6DXV7	Xanthomonas_phage	4.6e-47	86.4
WP_039509963.1\|287354_287720_+	hypothetical protein	Q38057	Xanthomonas_phage	2.2e-24	54.3
WP_082330025.1\|287787_288099_+	chloride channel protein	A0A1W6DXV7	Xanthomonas_phage	8.8e-46	88.3
WP_039509960.1\|288118_289450_-	filamentous phage phiLf protein I	Q4LAU4	Stenotrophomonas_phage	2.7e-128	55.7
WP_039509957.1\|289451_289772_-	hypothetical protein	NA	NA	NA	NA
WP_039509954.1\|289782_290607_-	hypothetical protein	Q9XJ91	Xanthomonas_phage	2.4e-34	75.8
WP_015471906.1\|291155_291284_-	hypothetical protein	NA	NA	NA	NA
WP_126750672.1\|291314_291431_-	hypothetical protein	NA	NA	NA	NA
WP_051634090.1\|291569_291863_-	hypothetical protein	A0A1W6DXU2	Xanthomonas_phage	5.1e-11	42.4
WP_043088480.1\|291859_292834_-	replication initiation protein	A0A077JDC0	Xanthomonas_phage	1.5e-115	61.3

DBSCAN-SWA_2

763324 : 883844

111

Stenotrophomonas_phage(50.0%)

terminase,plate,head,tRNA,holin,tail,integrase,capsid,transposase,portal

attL 784590:784649|attR 850790:851988

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043088046.1\|763324_765703_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_016903312.1\|765829_766825_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	3.9e-31	35.6
WP_016903313.1\|767087_767447_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_002811096.1\|767457_767655_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_080639730.1\|767895_768438_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.9e-14	35.2
WP_039815152.1\|768486_770391_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	3.4e-124	35.7
WP_150861873.1\|770708_771839_+	substrate-binding domain-containing protein	C6ZCU4	Enterobacteria_phage	3.8e-14	27.6
WP_126750776.1\|772282_774061_-	cyclomaltodextrin glucanotransferase	NA	NA	NA	NA
WP_039514038.1\|773955_775434_-	MFS transporter	NA	NA	NA	NA
WP_043087860.1\|775430_777617_-	Six-hairpin glycosidase-like protein	NA	NA	NA	NA
WP_043104766.1\|777859_779938_+	glycoside hydrolase family 97 protein	NA	NA	NA	NA
WP_150861874.1\|780183_783009_+	TonB-dependent receptor	NA	NA	NA	NA
784590:784649	attL	NA	NA	NA	NA
WP_126750777.1\|784606_785715_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.5e-43	37.9
WP_004666662.1\|786989_787367_+	hypothetical protein	NA	NA	NA	NA
WP_004666661.1\|787527_787923_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_003108276.1\|787919_788171_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_004666660.1\|788349_788922_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	5.6e-46	54.9
WP_126750905.1\|788950_791980_+\|transposase	Tn3-like element ISPsy42 family transposase	NA	NA	NA	NA
WP_039516423.1\|793159_794449_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_081327695.1\|794597_795017_-	hypothetical protein	NA	NA	NA	NA
WP_080639732.1\|795583_796072_-	DUF4189 domain-containing protein	NA	NA	NA	NA
WP_051634063.1\|796082_797132_-	type IV secretion system protein	NA	NA	NA	NA
WP_081327696.1\|797171_798488_-	peptidoglycan-binding protein	B3FJD7	Pseudomonas_phage	3.1e-07	33.6
WP_039516416.1\|798606_799227_-	hypothetical protein	NA	NA	NA	NA
WP_039815203.1\|799595_800084_-	DUF4189 domain-containing protein	NA	NA	NA	NA
WP_104613370.1\|800514_801000_-	DUF4189 domain-containing protein	NA	NA	NA	NA
WP_039516413.1\|801040_802123_-	type IV secretion system protein	NA	NA	NA	NA
WP_016901057.1\|802219_802969_-	hypothetical protein	NA	NA	NA	NA
WP_150861875.1\|803033_805487_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_016901062.1\|805588_805900_-	hypothetical protein	NA	NA	NA	NA
WP_016901064.1\|805892_806303_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_104567812.1\|806361_807201_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_087962231.1\|807251_808310_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_039516406.1\|808306_809476_-	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_039516403.1\|809472_810240_-	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_126750694.1\|810236_811271_-	type IV secretion system protein	NA	NA	NA	NA
WP_016901077.1\|811382_811793_-	hypothetical protein	NA	NA	NA	NA
WP_039516401.1\|812142_813816_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_039516399.1\|813851_814094_-	hypothetical protein	NA	NA	NA	NA
WP_039516394.1\|814795_816817_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_081327694.1\|816965_817499_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_039516391.1\|817712_818954_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	4.1e-118	53.9
WP_150861941.1\|819643_819772_-	hypothetical protein	NA	NA	NA	NA
WP_039516381.1\|819864_820137_-	hypothetical protein	NA	NA	NA	NA
WP_161600666.1\|820135_820303_+	hypothetical protein	NA	NA	NA	NA
WP_150861942.1\|820304_820679_-	hypothetical protein	V9IQL6	Stenotrophomonas_phage	9.0e-21	51.2
WP_043087488.1\|820808_821081_-	hypothetical protein	NA	NA	NA	NA
WP_039516369.1\|821404_821623_-	hypothetical protein	NA	NA	NA	NA
WP_150861943.1\|821946_824619_-	bifunctional DNA primase/helicase	V9IQW5	Stenotrophomonas_phage	0.0e+00	69.2
WP_043104828.1\|824651_824864_-	hypothetical protein	NA	NA	NA	NA
WP_039516267.1\|824860_825139_-	hypothetical protein	NA	NA	NA	NA
WP_008572766.1\|825149_825470_-	hypothetical protein	V9IQW3	Stenotrophomonas_phage	2.0e-24	58.7
WP_094184631.1\|825472_825721_-	hypothetical protein	NA	NA	NA	NA
WP_039516264.1\|825806_826238_+	transcriptional regulator	E5E3P4	Burkholderia_phage	9.1e-09	31.1
WP_094184632.1\|826507_826828_+	hypothetical protein	NA	NA	NA	NA
WP_039516261.1\|826846_827833_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	4.4e-91	54.8
WP_039516259.1\|827829_828231_-\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	4.6e-39	62.9
WP_150861876.1\|828243_831114_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	5.6e-211	50.5
WP_005922203.1\|831143_831257_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	4.2e-06	68.6
WP_039509970.1\|831265_831568_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	3.7e-25	66.3
WP_039509971.1\|831613_832123_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	2.1e-73	81.1
WP_043105368.1\|832152_833319_-\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	1.4e-133	63.4
WP_039510418.1\|833330_833690_-\|plate	baseplate assembly protein	V9IQW0	Stenotrophomonas_phage	6.6e-37	65.3
WP_043105367.1\|833686_834250_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	6.9e-25	46.4
WP_039510420.1\|834392_835067_-	hypothetical protein	NA	NA	NA	NA
WP_016850455.1\|835069_835363_-	hypothetical protein	NA	NA	NA	NA
WP_043105366.1\|835435_837235_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	1.4e-82	39.2
WP_005922192.1\|837247_837793_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	3.2e-51	56.0
WP_043105364.1\|837785_838676_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	3.4e-82	52.4
WP_150861877.1\|838857_839304_+	hypothetical protein	NA	NA	NA	NA
WP_005929469.1\|839449_839896_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	1.6e-40	60.1
WP_039510118.1\|839883_840303_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	1.1e-40	65.9
WP_039510117.1\|840299_840788_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	2.6e-28	52.4
WP_150861878.1\|840787_841429_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	1.4e-50	62.7
WP_005922189.1\|841425_841701_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	1.3e-21	59.8
WP_005929454.1\|841693_842050_-	membrane protein	V9IQG9	Stenotrophomonas_phage	3.5e-22	56.1
WP_008572714.1\|842054_842264_-\|tail	tail protein	K4PAW7	Burkholderia_phage	2.0e-14	58.0
WP_039510111.1\|842263_842731_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	6.4e-32	50.3
WP_043105363.1\|842831_843551_-\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	5.9e-69	62.9
WP_039510109.1\|843554_844568_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	2.7e-136	70.8
WP_039514795.1\|844614_845457_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	2.4e-69	54.4
WP_078586678.1\|845578_847363_+\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	1.0e-271	76.7
WP_039514779.1\|847362_848376_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	4.0e-140	72.5
WP_039514777.1\|848401_848647_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	7.4e-16	55.0
WP_039514774.1\|848564_849269_+	site-specific DNA-methyltransferase	V9IQV5	Stenotrophomonas_phage	1.3e-105	76.8
WP_094184646.1\|849366_850443_+	ParA family protein	H2BD62	Pseudomonas_phage	6.4e-35	31.2
WP_126750777.1\|850806_851915_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.5e-43	37.9
WP_150861879.1\|852370_852715_-	hypothetical protein	NA	NA	NA	NA
850790:851988	attR	NA	NA	NA	NA
WP_011347842.1\|852886_854263_-\|transposase	IS5-like element ISXca5 family transposase	K4ICS3	Acidithiobacillus_phage	4.6e-62	47.0
WP_150861880.1\|858217_858862_-	DUF1629 domain-containing protein	NA	NA	NA	NA
WP_081327693.1\|860425_860851_-	type IV pilin protein	NA	NA	NA	NA
WP_039512159.1\|860853_862989_-	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_039512158.1\|864620_865133_-	pilus assembly protein	NA	NA	NA	NA
WP_080716285.1\|865129_866104_-	type IV pilus assembly protein PilW	NA	NA	NA	NA
WP_039512157.1\|866139_866574_-	type IV pilus modification protein PilV	NA	NA	NA	NA
WP_081327649.1\|866581_867190_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_039512160.1\|867805_868357_+	sensor protein lytS	Q9EYF3	Enterobacteria_phage	1.7e-20	37.2
WP_039816782.1\|868374_869760_-	LOG family protein	NA	NA	NA	NA
WP_039510850.1\|869865_873081_-	TonB-dependent receptor	NA	NA	NA	NA
WP_006450537.1\|873534_874134_-	YhgN family NAAT transporter	NA	NA	NA	NA
WP_039510665.1\|874130_874874_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_006450539.1\|874870_875191_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_039510668.1\|875312_875891_+	superoxide dismutase	NA	NA	NA	NA
WP_039510670.1\|876030_877176_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_039510673.1\|877172_877676_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.8e-16	38.7
WP_024937963.1\|877734_878004_+	hypothetical protein	NA	NA	NA	NA
WP_039510679.1\|878000_878885_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_126750697.1\|878926_879994_+	DUF2272 domain-containing protein	NA	NA	NA	NA
WP_039510894.1\|880215_882330_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_003485583.1\|882499_882760_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_039512180.1\|882917_883844_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA

DBSCAN-SWA_3

2768576 : 2838596

Arthrobacter_phage(27.27%)

tail,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003482177.1\|2768576_2769269_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_026064111.1\|2769486_2770827_+	outer membrane protein transport protein	NA	NA	NA	NA
WP_039816496.1\|2770947_2771649_+	2OG-Fe(II) oxygenase	E3SK61	Synechococcus_phage	1.0e-17	46.3
WP_039514720.1\|2771745_2772840_-	PA0069 family radical SAM protein	NA	NA	NA	NA
WP_016901831.1\|2772975_2774436_+	cardiolipin synthase	NA	NA	NA	NA
WP_024939143.1\|2774510_2774780_+	hypothetical protein	NA	NA	NA	NA
WP_039514723.1\|2774790_2775558_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_039514725.1\|2775685_2776093_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_011035269.1\|2776447_2776858_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_039514729.1\|2776861_2777287_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_005912445.1\|2777332_2778094_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_039518127.1\|2778179_2778851_-	energy transducer TonB	NA	NA	NA	NA
WP_039509610.1\|2779004_2780201_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_016901838.1\|2780352_2781159_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_039509608.1\|2781221_2782058_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_016901840.1\|2782125_2784570_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	3.5e-113	34.7
WP_039512805.1\|2784684_2785791_-	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_016901842.1\|2786877_2787978_-	DNA polymerase III subunit beta	A0A0A8IL17	Aurantimonas_phage	7.4e-55	38.1
WP_016901843.1\|2788255_2789584_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_002805908.1\|2789826_2789967_+	50S ribosomal protein L34	NA	NA	NA	NA
WP_039512801.1\|2790005_2790452_+	ribonuclease P protein component	NA	NA	NA	NA
WP_043087383.1\|2790467_2792189_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_126750749.1\|2792282_2794985_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_039512794.1\|2795149_2796490_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_039512791.1\|2796658_2797519_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_039512788.1\|2797713_2800014_+	TonB-dependent receptor	NA	NA	NA	NA
WP_126750757.1\|2800252_2801365_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_039512785.1\|2801450_2802239_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_016901852.1\|2802586_2803543_-	TerC family protein	K4F9T9	Cronobacter_phage	3.8e-31	31.1
WP_039515488.1\|2803804_2804971_+	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_039816449.1\|2805004_2805322_+	membrane protein	NA	NA	NA	NA
WP_081327589.1\|2805548_2805851_-	hypothetical protein	NA	NA	NA	NA
WP_039515484.1\|2806495_2807083_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_039515481.1\|2807085_2808054_+	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_051633976.1\|2808210_2810982_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	6.9e-17	39.9
WP_039515476.1\|2811011_2813120_+	7-beta-(4-carbaxybutanamido)cephalosporanic acid acylase	NA	NA	NA	NA
WP_039515473.1\|2813203_2813680_+	hypothetical protein	NA	NA	NA	NA
WP_039515471.1\|2813751_2815008_+	peptidase M19	NA	NA	NA	NA
WP_043087259.1\|2815484_2816795_+	MFS transporter	NA	NA	NA	NA
WP_039515468.1\|2816820_2817990_+	glycerate kinase	W6LM47	Streptococcus_phage	9.6e-45	40.2
WP_039515465.1\|2819449_2821201_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	7.0e-15	30.3
WP_016902101.1\|2821337_2821730_+	DUF2628 domain-containing protein	NA	NA	NA	NA
WP_043087261.1\|2822688_2825166_+	glycoside hydrolase family 92 protein	NA	NA	NA	NA
WP_039816211.1\|2825605_2827021_-	amino acid permease	NA	NA	NA	NA
WP_016902107.1\|2827202_2827583_-	hypothetical protein	NA	NA	NA	NA
WP_039816209.1\|2827842_2829426_+	DNA recombination protein RmuC	NA	NA	NA	NA
WP_115510584.1\|2829647_2830013_+	hypothetical protein	NA	NA	NA	NA
WP_039816204.1\|2830164_2830716_+	glutathione peroxidase	NA	NA	NA	NA
WP_051633977.1\|2831068_2831488_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_039816202.1\|2831649_2832705_-	VacJ family lipoprotein	NA	NA	NA	NA
WP_039514623.1\|2832715_2833015_-	STAS domain-containing protein	NA	NA	NA	NA
WP_043087264.1\|2833004_2833667_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016902127.1\|2833663_2834209_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_016902129.1\|2834220_2834970_-	ABC transporter permease	NA	NA	NA	NA
WP_039514620.1\|2834969_2835764_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.4e-09	28.5
WP_016902133.1\|2835999_2836287_+	hypothetical protein	NA	NA	NA	NA
WP_051633978.1\|2836293_2836821_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_039514617.1\|2836857_2837394_-\|tail	phage tail protein	A0A218M5J0	Arthrobacter_phage	1.2e-10	31.5
WP_039514615.1\|2837451_2837979_-\|tail	phage tail protein	A0A222ZH31	Arthrobacter_phage	2.0e-10	30.1
WP_016902137.1\|2838050_2838596_-\|tail	phage tail protein	A0A0U4JQ24	Arthrobacter_phage	2.1e-10	32.1

DBSCAN-SWA_4

3382852 : 3460658

Stenotrophomonas_phage(50.0%)

terminase,plate,head,tRNA,holin,tail,integrase,capsid,transposase,portal

attL 3393816:3393835|attR 3448905:3448924

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039515356.1\|3382852_3383416_-\|tRNA	tRNA threonylcarbamoyladenosine biosynthesis protein RimN	NA	NA	NA	NA
WP_043087498.1\|3383425_3385924_-	DNA topoisomerase I	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	3.2e-114	35.1
WP_039515353.1\|3386106_3387339_-	RDD family protein	NA	NA	NA	NA
WP_039515351.1\|3387366_3388101_-	DUF4339 domain-containing protein	NA	NA	NA	NA
WP_003484452.1\|3388138_3388612_-	DUF494 domain-containing protein	NA	NA	NA	NA
WP_043087496.1\|3388655_3389792_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_026064326.1\|3389863_3391000_-	LysM peptidoglycan-binding domain-containing protein	G3MBQ1	Bacillus_virus	1.3e-09	57.1
WP_016902506.1\|3391131_3391644_+	peptide deformylase	E3SLL2	Synechococcus_phage	5.2e-19	42.1
WP_039515347.1\|3391951_3392875_+\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
WP_126750668.1\|3392871_3394185_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
3393816:3393835	attL	NA	NA	NA	NA
WP_039515343.1\|3394233_3395955_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_043087495.1\|3396108_3397386_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_039514517.1\|3397456_3398281_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_126750663.1\|3398281_3399340_+	CDP-glycerol glycerophosphotransferase	NA	NA	NA	NA
WP_043087493.1\|3399429_3400935_-	PH domain-containing protein	NA	NA	NA	NA
WP_014125894.1\|3401815_3402886_-	hypothetical protein	NA	NA	NA	NA
WP_014125895.1\|3402970_3404248_-	lytic murein transglycosylase	NA	NA	NA	NA
WP_039515325.1\|3404379_3407370_-\|transposase	Tn3-like element TnXax1 family transposase	A0A1B0V7H9	Salmonella_phage	9.9e-86	27.4
WP_014125897.1\|3407377_3408652_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_011345701.1\|3408835_3409903_+	cointegrate resolution protein T	NA	NA	NA	NA
WP_011345700.1\|3409890_3410928_-	hypothetical protein	NA	NA	NA	NA
WP_150861910.1\|3411965_3413042_+	avirulence protein	NA	NA	NA	NA
WP_150861949.1\|3413312_3413804_-	PH domain-containing protein	NA	NA	NA	NA
WP_039514516.1\|3413942_3415076_-	GTP cyclohydrolase II RibA	A0A2H4PQS2	Staphylococcus_phage	2.1e-28	41.5
WP_039514515.1\|3415320_3415842_+	N-acetyltransferase	NA	NA	NA	NA
WP_016902495.1\|3415896_3416811_-	lauroyl acyltransferase	NA	NA	NA	NA
WP_039514514.1\|3416911_3417352_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_039514513.1\|3417459_3419334_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.8e-37	35.5
WP_039514512.1\|3419594_3419834_+	hypothetical protein	NA	NA	NA	NA
WP_043087490.1\|3420259_3421447_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	1.1e-109	51.4
WP_029820462.1\|3421446_3421671_-	hypothetical protein	V9IQX6	Stenotrophomonas_phage	5.7e-15	58.5
WP_108723503.1\|3422142_3422271_-	hypothetical protein	NA	NA	NA	NA
WP_039514509.1\|3422363_3422636_-	hypothetical protein	NA	NA	NA	NA
WP_157849481.1\|3422634_3422802_+	hypothetical protein	NA	NA	NA	NA
WP_043087489.1\|3422803_3423178_-	hypothetical protein	V9IQL6	Stenotrophomonas_phage	2.9e-19	48.8
WP_043087488.1\|3423307_3423580_-	hypothetical protein	NA	NA	NA	NA
WP_039516369.1\|3423903_3424122_-	hypothetical protein	NA	NA	NA	NA
WP_126750669.1\|3424445_3427118_-	toprim domain-containing protein	V9IQW5	Stenotrophomonas_phage	0.0e+00	69.8
WP_039509719.1\|3427151_3427364_-	hypothetical protein	NA	NA	NA	NA
WP_039509717.1\|3427360_3427639_-	hypothetical protein	NA	NA	NA	NA
WP_039408422.1\|3427972_3428230_-	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	8.6e-07	44.6
WP_039509714.1\|3428300_3428732_+	helix-turn-helix transcriptional regulator	E5E3U2	Burkholderia_phage	1.3e-07	33.0
WP_039509712.1\|3428945_3429992_+	hypothetical protein	NA	NA	NA	NA
WP_126750664.1\|3430005_3431145_+	hypothetical protein	NA	NA	NA	NA
WP_039509708.1\|3431154_3432144_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	7.5e-91	54.2
WP_039509705.1\|3432140_3432542_-\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	1.5e-37	59.1
WP_043087485.1\|3432554_3435425_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	7.5e-192	48.4
WP_017120157.1\|3435454_3435568_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	5.4e-06	65.7
WP_039509749.1\|3435576_3435879_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	2.2e-25	67.4
WP_043087481.1\|3435924_3436434_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	1.3e-70	76.9
WP_039509752.1\|3436464_3437631_-\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	1.9e-133	63.3
WP_039509753.1\|3437642_3438002_-\|plate	baseplate assembly protein	V9IQW0	Stenotrophomonas_phage	7.3e-36	64.4
WP_043087479.1\|3437998_3438568_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	8.9e-28	48.1
WP_039509754.1\|3438767_3439214_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_039509755.1\|3439217_3439892_-	hypothetical protein	NA	NA	NA	NA
WP_039509757.1\|3439894_3440188_-	hypothetical protein	NA	NA	NA	NA
WP_043087477.1\|3440260_3442060_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	4.0e-82	38.5
WP_039510022.1\|3442072_3442618_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	6.5e-52	56.6
WP_054590695.1\|3442610_3443501_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	5.5e-85	54.4
WP_039510018.1\|3443629_3444574_-	diguanylate cyclase	NA	NA	NA	NA
WP_051634040.1\|3444748_3445150_-	response regulator	NA	NA	NA	NA
WP_039510016.1\|3445249_3445699_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	5.9e-35	55.4
WP_039510014.1\|3445686_3446106_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	4.4e-40	65.2
WP_039510011.1\|3446102_3446591_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	2.6e-28	52.4
WP_126750665.1\|3446590_3447232_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	2.9e-51	63.3
WP_005922189.1\|3447228_3447504_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	1.3e-21	59.8
WP_039510008.1\|3447496_3447853_-	membrane protein	V9IQG9	Stenotrophomonas_phage	1.0e-21	56.1
WP_005917735.1\|3447857_3448067_-\|tail	tail protein	K4PAW7	Burkholderia_phage	7.0e-15	59.4
WP_039510005.1\|3448066_3448534_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	5.4e-31	48.4
WP_039510002.1\|3448632_3449352_-\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	6.3e-71	64.1
3448905:3448924	attR	NA	NA	NA	NA
WP_039510000.1\|3449355_3450369_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	7.9e-136	70.2
WP_039509997.1\|3450415_3451258_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	1.1e-66	52.7
WP_039509993.1\|3453162_3454170_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	3.4e-139	72.1
WP_039509991.1\|3454203_3454866_-	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_039509989.1\|3455310_3456507_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_081327608.1\|3456506_3457169_-	response regulator transcription factor	NA	NA	NA	NA
WP_126750777.1\|3457828_3458937_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.5e-43	37.9
WP_043087966.1\|3459443_3460658_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	2.5e-56	35.0

DBSCAN-SWA_5

3656040 : 3662420

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039513612.1\|3656040_3657096_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.2e-83	48.2
WP_039513609.1\|3657159_3658047_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.5e-95	57.5
WP_016903935.1\|3658043_3658601_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.1e-44	47.8
WP_039513605.1\|3658597_3659506_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	35.4
WP_043087332.1\|3659621_3661025_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.3e-48	30.1
WP_043087333.1\|3661073_3662420_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	3.7e-32	26.5

DBSCAN-SWA_6

4629912 : 4695300

Klosneuvirus(18.18%)

plate,tRNA,tail,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039512206.1\|4629912_4632555_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	3.5e-175	40.3
WP_024939734.1\|4632966_4633608_+	hypothetical protein	NA	NA	NA	NA
WP_039512205.1\|4633793_4634822_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_043088358.1\|4634818_4635688_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_024939731.1\|4635745_4636156_+	ribosome silencing factor	NA	NA	NA	NA
WP_043088357.1\|4636167_4637283_+	J domain-containing protein	NA	NA	NA	NA
WP_039515719.1\|4637507_4639049_-	DUF839 domain-containing protein	NA	NA	NA	NA
WP_016903756.1\|4639170_4639641_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_039515716.1\|4639879_4640551_-	energy transducer TonB	NA	NA	NA	NA
WP_043105585.1\|4640849_4641584_-	SIMPL domain-containing protein	NA	NA	NA	NA
WP_039515714.1\|4641706_4642279_+	Maf-like protein	NA	NA	NA	NA
WP_024939725.1\|4642278_4643778_+	ribonuclease G	NA	NA	NA	NA
WP_150861931.1\|4643947_4647904_+	TIGR02099 family protein	NA	NA	NA	NA
WP_039512197.1\|4647987_4648743_-	hypothetical protein	NA	NA	NA	NA
WP_024940782.1\|4648842_4650288_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_016904884.1\|4650439_4651021_-	ribosome-associated protein	NA	NA	NA	NA
WP_039512196.1\|4651073_4652441_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_100224808.1\|4652614_4652998_+	DUF4870 domain-containing protein	NA	NA	NA	NA
WP_016903976.1\|4654668_4655544_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_016903977.1\|4655545_4655809_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_043087311.1\|4655840_4657136_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_039512195.1\|4657227_4658934_-	alkaline phosphatase	NA	NA	NA	NA
WP_039512194.1\|4659075_4660416_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_115655264.1\|4660587_4661262_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_039512192.1\|4661368_4661860_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_039512191.1\|4662009_4662759_-	C40 family peptidase	A0A0K2SUC1	Clostridium_phage	2.6e-19	37.7
WP_039512201.1\|4662868_4663450_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	1.5e-19	41.0
WP_039512190.1\|4663523_4664003_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_039512189.1\|4664210_4665455_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_039512188.1\|4665462_4666713_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_039512187.1\|4666709_4668080_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	3.8e-40	25.9
WP_039512186.1\|4668564_4668972_+	cysteine methyltransferase	NA	NA	NA	NA
WP_039512199.1\|4669012_4669711_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_039512185.1\|4670194_4672207_-	M13 family metallopeptidase	NA	NA	NA	NA
WP_039512184.1\|4672391_4674485_-	M13 family metallopeptidase	A0A1V0SHG2	Klosneuvirus	5.1e-73	27.5
WP_126750623.1\|4674848_4676990_-	peptidase	A0A1V0SHG2	Klosneuvirus	4.5e-72	28.3
WP_043087676.1\|4677298_4678897_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_016903788.1\|4679000_4682075_-	TonB-dependent receptor	NA	NA	NA	NA
WP_039512183.1\|4685742_4686594_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_010366727.1\|4686690_4687260_+	dCTP deaminase	S5VM63	Pseudomonas_phage	5.3e-73	70.1
WP_024939537.1\|4687282_4687468_-	hypothetical protein	NA	NA	NA	NA
WP_006452352.1\|4687941_4688109_-	hypothetical protein	NA	NA	NA	NA
WP_024939538.1\|4688136_4688574_-	HIT family protein	NA	NA	NA	NA
WP_043106308.1\|4688570_4689233_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_039509746.1\|4689497_4689773_-	hypothetical protein	A8YQQ5	Burkholderia_virus	1.1e-15	56.2
WP_039510540.1\|4691617_4692163_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	8.4e-52	56.6
WP_081327530.1\|4692155_4692563_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	2.1e-31	52.6
WP_161600672.1\|4692667_4692976_+	hypothetical protein	NA	NA	NA	NA
WP_081327532.1\|4693496_4693862_+	hypothetical protein	NA	NA	NA	NA
WP_126750777.1\|4694191_4695300_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.5e-43	37.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044334

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection