CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP031700	Neisseria zalophi strain ATCC BAA-2455 chromosome, complete genome	2 crisprs	DinG,DEDDh,csa3,WYL,RT,cas3	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031700_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031700_1

131302-131538

Orphan

Consensus_repeat	Method
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA	PILER-CR
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA	CRISPRCasFinder
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA	CRT

3 spacers

The CRISPR arrays of NZ_CP031700_1

>merge|NZ_CP031700|1|131302-131538|PILER-CR,CRISPRCasFinder,CRT
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACAGGCGGCCTTGTTGTTAAGCAAGGCAGCGCGCCCGTCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACAAGAAAAGAACAGCAAAGCTCGGTTGTAAAATATCCGATCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACAGTCATAATGTTAGTACCTTGCAAGCGGTCTAAAGTCAGCCGCCTTTGCGCGGCTATACATTAATTTA

>NZ_CP031700|1|1|131302-131471|PILER-CR
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA	GGCGGCCTTGTTGTTAAGCAAGGCAGCGCGCCCG
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA	AGAAAAGAACAGCAAAGCTCGGTTGTAAAATATCCGA
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA

>NZ_CP031700|1|1|131302-131538|CRISPRCasFinder
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA	GGCGGCCTTGTTGTTAAGCAAGGCAGCGCGCCCG
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA	AGAAAAGAACAGCAAAGCTCGGTTGTAAAATATCCGA
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA	GTCATAATGTTAGTACCTTGCAAGCGGTCTAAAG
TCAGCCGCCTTTGCGCGGCTATACATTAATTTA

>NZ_CP031700|1|1|131302-131538|CRT
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA	GGCGGCCTTGTTGTTAAGCAAGGCAGCGCGCCCG
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA	AGAAAAGAACAGCAAAGCTCGGTTGTAAAATATCCGA
TCAGCCGCCTTTGCGCGGCTGTGTGTTGAAACA	GTCATAATGTTAGTACCTTGCAAGCGGTCTAAAG
TCAGCCGCCTTTGCGCGGCTATACATTAATTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031700.1\|WP_151049212.1\|132446_133217_-\|16S-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|377360
NZ_CP031700.1\|WP_151049222.1\|140376_141273_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|274810
NZ_CP031700.1\|WP_151049216.1\|135082_136675_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP031700.1\|WP_151049224.1\|141516_142800_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|226584
NZ_CP031700.1\|WP_151049227.1\|143133_143373_-\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225196
NZ_CP031700.1\|WP_151049198.1\|118187_118625_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|376525
NZ_CP031700.1\|WP_151049200.1\|118771_119152_+\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|376462
NZ_CP031700.1\|WP_151049208.1\|129876_130938_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP031700.1\|WP_151049220.1\|139404_140334_+\|DUF4743-domain-containing-protein	unknown	unknown	gnl\|CDD\|239648
NZ_CP031700.1\|WP_151049210.1\|131599_132325_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP031700.1\|WP_151052920.1\|121888_122800_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|223786
NZ_CP031700.1\|WP_151049201.1\|119233_121510_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|235367
NZ_CP031700.1\|WP_151049205.1\|123840_125817_+\|DUF3488-domain-containing-protein	unknown	unknown	gnl\|CDD\|378784
NZ_CP031700.1\|WP_151049229.1\|143593_144673_+\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|378455
NZ_CP031700.1\|WP_151049196.1\|116687_117959_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NZ_CP031700.1\|WP_151049203.1\|122783_123731_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP031700.1\|WP_151049214.1\|133431_135093_-\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP031700.1\|WP_151049207.1\|128505_129456_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|187553
NZ_CP031700.1\|WP_151049218.1\|136824_139128_-\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_CP031700.1\|WP_151052921.1\|126101_128324_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235521

Protein	Function_ID	Function_description	E-value
NZ_CP031700.1\|WP_151049212.1\|132446_133217_-\|16S-rRNA-methyltransferase	gnl\|CDD\|377360	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This is a family of putative SAM-dependent methyltransferases.	7.32677e-101
NZ_CP031700.1\|WP_151049222.1\|140376_141273_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|274810	TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. [Protein synthesis, tRNA and rRNA base modification].	4.65861e-149
NZ_CP031700.1\|WP_151049216.1\|135082_136675_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.72097e-33
NZ_CP031700.1\|WP_151049224.1\|141516_142800_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|226584	COG4099, COG4099, Predicted peptidase [General function prediction only].	2.71083e-61
NZ_CP031700.1\|WP_151049227.1\|143133_143373_-\|TM2-domain-containing-protein	gnl\|CDD\|225196	COG2314, XynA, Predicted membrane protein [Function unknown].	2.70661e-08
NZ_CP031700.1\|WP_151049198.1\|118187_118625_+\|cytochrome-c	gnl\|CDD\|376525	pfam01322, Cytochrom_C_2, Cytochrome C'.	6.23108e-28
NZ_CP031700.1\|WP_151049200.1\|118771_119152_+\|MAPEG-family-protein	gnl\|CDD\|376462	pfam01124, MAPEG, MAPEG family. This family is has been called MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism). It includes proteins such as Prostaglandin E synthase. This enzyme catalyzes the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.	3.04329e-10
NZ_CP031700.1\|WP_151049208.1\|129876_130938_-\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	7.74485e-31
NZ_CP031700.1\|WP_151049220.1\|139404_140334_+\|DUF4743-domain-containing-protein	gnl\|CDD\|239648	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.60696e-73
NZ_CP031700.1\|WP_151049210.1\|131599_132325_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	1.80612e-16
NZ_CP031700.1\|WP_151052920.1\|121888_122800_+\|AAA-domain-containing-protein	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	8.09816e-88
NZ_CP031700.1\|WP_151049201.1\|119233_121510_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
NZ_CP031700.1\|WP_151049205.1\|123840_125817_+\|DUF3488-domain-containing-protein	gnl\|CDD\|378784	pfam11992, DUF3488, Domain of unknown function (DUF3488). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.	2.79039e-65
NZ_CP031700.1\|WP_151049229.1\|143593_144673_+\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.03834e-137
NZ_CP031700.1\|WP_151049196.1\|116687_117959_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	2.51867e-161
NZ_CP031700.1\|WP_151049203.1\|122783_123731_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	9.86565e-16
NZ_CP031700.1\|WP_151049214.1\|133431_135093_-\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	6.3298e-130
NZ_CP031700.1\|WP_151049207.1\|128505_129456_-\|TIGR01777-family-protein	gnl\|CDD\|187553	cd05242, SDR_a8, atypical (a) SDRs, subgroup 8. This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.68068e-118
NZ_CP031700.1\|WP_151049218.1\|136824_139128_-\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP031700.1\|WP_151052921.1\|126101_128324_+\|hypothetical-protein	gnl\|CDD\|235521	PRK05590, PRK05590, hypothetical protein; Provisional.	2.9403e-10

>NZ_CP031700.1|WP_151049208.1|129876_130938_-|metal-dependent-hydrolase
MDSLTQAVLGAAVQGAGLGKYQGRKAIFYGALLGTLPDLDVFIHYDDPISSMTYHRSFSHSLMVLVLLAAVMTWIIKKRWPDSPYSSSRLFYTTAASLITHPLLDACTVYGTQLFWPLEPTPQQWSAVFIIDPIYTVPLLLAVIAVLWRGIKKSTHRALVLALAWSTAYLAWGGYGQYHHEQRVQAYLQGQGIAVKRIMATPLPFNTLAFRVLAQTDNGDYIEAFSGWLDHAPPEYVRLPQGLDLAEPIRDEVLFKRLNWFSDGWIRVNQEDNRLVVSDLRMGLGNSLSFRFVMAEYDGNKWNPVLPYRFGTGLRDMPTYLSRIWPRVWHGTPLPLSEWINMPSAEPEAVQEN
>NZ_CP031700.1|WP_151049207.1|128505_129456_-|TIGR01777-family-protein
MNILITGGSGFLGQSLSRRLKNLSDNHPNSATRITWLTRDSGQFHPDYIDLMTYEDFQTTEETFDVIINLAGAGIADKRWSAARKKALLDSRIRPTQAVLAFIARTQTPPKLFVSGSAIGWYGVQGEKALDENSGFVGDFAHDLCEAWEKEAELATASGVEVVILRTGVVIHPKGGMLARLLTPFKLGLGGKLGDGKQIMSWISREDWVNAAGFIIEQHLAKQIQQAQNKSEAKSMVSLYNLTAPNPLNNQEFTKTLGSYLHRPTLMGVPAFILKLILGEMSTLLLDGQKVIPKNLLEQGFKFRHSYLKQALEEQE
>NZ_CP031700.1|WP_151052921.1|126101_128324_+|hypothetical-protein
MLSEQEIFNQLSTLCSQKGFIHALVKLNFDNNYYRANKNGNFTSNQIVKSHINKEKVIRAELLTLLALVIKNNPYFFQDEKPIPEILEKNIQTIKELLNNLHNIFTQPIVKNMREKANVMHTQQNFELFNESDVFLTEESIREAIFYGGDGVYSFQYQDLGCLKYLKDNDWFVKNKGFSIRVAFYVLEIIFDLHHIKIDYALTNKNEISLEDFILSKTEIINFLEKKSVNNFPIDELQSFIDAFCLKNIDDINNFRQIDDFNPLSAYPFINLSDDKFLIFDLFTISQALYETPFFWMLNDKQYKNIALKNRGDFTEDFTYKILCNVFGEKNVWKNVDLYSEHDGIKSKNKSGEIDILVNVSGHALVFQAKAKKLTLESRKGNIAQISNDFSKAIQDAYDQAVNCSEILLTNQYTAKVNNEIIRLPKIEFCYPICILSEYFPALVMQVRLLLEEHNINNIAHALVLDVFLLDLMSKTLLTPLDFLHFISSFSKSRSIFLANTQIEILSSHLKANWLCLEEDVNLVYLDDSLSFNLDIYISKIRGKMLDEHDINIPSGWLKFKDTYWWELFNFLSPLDSQKKLKLGLLMMQCSGELIENYNLGINQCIRSLNHNKTQILSDFSLYIGDKSGLTVYVTDHPITTNDLIKKINTHAILKKYHTHADLWFALILSKQGKVKYFDVLDFEWKYNQEIQNIYQNTLGKNNIFKTLTKGRVITKKIGRNEPCPCNSGKKYKHCCLKNR
>NZ_CP031700.1|WP_151049205.1|123840_125817_+|DUF3488-domain-containing-protein
MLIANPSFLKQTPPPAAAATVLLTLLLTALPLVTALPVPVMITFAVLWLSRLAILKLNTARIPKAALIVVMFAAGALVWQQLGTVFGREGGISFLLLMIMLKAFEGGSRRDWQVLLLAMLFLIGSSVLLNQNLLIGAWLLTALPAVGICFAVLCGLGIKESAKHTFQALLLTLPLMALLFVAVPRLSEPLWSIPQEKGQAKTGLSDTMEPGSISNLVQSDEWVANITFADGFIPRQSDLYWRAVIMADFDSIRWQALDDTNIDEARPIAEAADTISYQIVIQDQNRVLPALDYPTGDMPRRLTRRAGQTIRAYRSREGLRRLNLQATAKNTLNHKLYRSEYARYTHLPENGNLQTRQLAQTLAEQSGNPRQFIDKVLHYYRSRPFRYTLQPPRTPGRNGIDEFMFRTLEGFCEHYAQSFVVMMRAAGLPARIVTGYLGAEYNSQAGFWQIRSKDAHAWAEVWLPDEQVWLRVDPTAAVSSARTESGIREALPETERNMVSDGQSTFARWQDTSRFYWQQWVVNYDQSRQNNLFSLLGLGGFNAQTLLLVLPVGLLIALLPLLRWWHKNRQSERDYLNEGFSLLKTALMGPNDETAAATSAGELQTLLRENRLEDKNLTRLLRQYEQWLYATERPAKSTQKSWYKAAAKIARHYARNHH
>NZ_CP031700.1|WP_151049203.1|122783_123731_+|DUF58-domain-containing-protein
MSPSPKRRLPAVTGRSPDLSALYCRPTRLGLGLLVTIALLWLVGLNYQVNLAYAAAFWLAGFAVVAVLTNLRQLLALQIDIKTPSEIFAGNTAALTLNTPNNTRRRWLWLCNEDDFINAETAAPQLWQPWPVASDGQSVYIWQVPTLRRGYLRVPPLRTASVAPFGISMVQCVWQWPSNTIVYPAPIPHEHPISQKQSDGTDKQYRSVQGGDDPAYLQPHQNGMPLQHVAWKAFAKTGEMLDKRFEEQQHTANRSMISYLDYPVGTPTDRLAGLLCFRVLEAERRGQPYILELPQKIIAPQKGQREICLTALALW
>NZ_CP031700.1|WP_151052920.1|121888_122800_+|AAA-domain-containing-protein
MNKNIQNALQQLNTLILGKENVMRQLMAAILAGGHILLEDVPGVGKTTLAHGVAAVLGLDYRRVQFTNDMLPSDLIGVNVYRPNEGTFEFHSGPVFHSFLLADEINRASPKLQSALLEAMEEHQVSVEGKTYTLPEPFIVVATQNPTEQLGTFPLPESQLDRFMMRLSMGYPTEAAEKQLYQQGSSRAALPALQAVCDAATLRQWQQQAAQVKCAPAAADYIYRLVNATRQPGRFILGLSPRAGLAVLAAAKAWAFMQGRNHILPEDIKAVWVPVANHRLQPVQQDRPSAHLLADLLNHVPVA
>NZ_CP031700.1|WP_151049201.1|119233_121510_-|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MNTFHLSGYPRIGAKRELKFAVEAFWKGAKTEAEVQETAAEIRRLNWATQKAAGADLLPVGDFSFYDHVLDLLCTLGAIPKRFGFDAANLSLPEYFQLARGNATQFAMEMTKWFDTNYHYIVPEWHADTEFKVNAKNLIAQIKEAKAQGHDIKPTLVGPVTLLWLGKAKDDNFKRISLLPKLLQAYAQLLRELAAEGVDWIQIDEPILAADADENWIKAVETAYKEFAHTGVRIIIGTYFASVAEHLNLLKSLPVHGVHIDCVRAPEQLSVFTDAWPQNKVLSVGLIDGRNVWRANLSKVIDTLEPVKAKLGNNLWIAPSCSLLHSPQDLAVEEKLDGEIKSWMAFAAQKLVELGVVKQALAHGKDSVKEEIAASDAAAADRATNKLIHNDAVKARVAALVKGADKRNSPFAERIKAQQAWMNLPVLPTTTIGSFPQTTEIRQARAAFKKGELSEADYDAAMKKEIAYCVEEQEKLELDVPVHGEAERNDMVEYFGEQLAGYCFTQFGWVQSYGSRCVKPPIIFGDVSRPNPMTVYWSSYAQSLTKRPMKGMLTGPVTMFKWSFVRDDIPLSEVAKQIALALNDEVLDLEKAGIKVIQIDEPAIREAMPLKKAQWDEYLAWACEAFRLSSVGAEDSTQIHTHMCYSEFNDILPAIASMDADVITIETSRSDMELLTAFGDFKYPNDIGPGVYDIHSPRVPTADEIEHLLRKAMEVVPVERLWVNPDCGLKTRGWKETIEQLQVMMDVTKKLRAELANK
>NZ_CP031700.1|WP_151049200.1|118771_119152_+|MAPEG-family-protein
MNFIHIIGLCALLQYLFFGIQVGRARAKYGIQAPAMAGNEQFERAVRVHANTLEQLVVFLPALVIASSYWQNGITVIIGLVYLIGRFIYWRAYMADPSTRAIGFLLTVIPSGILIIMGLIGAVFKA
>NZ_CP031700.1|WP_151049198.1|118187_118625_+|cytochrome-c
MKKYLWALLCLLPAALPAHAEDNDVKARQQYMKEWRGLTKQMNNMLQKHNILSFPSGEFAELTKQLNDTAAEPWPLFQTDSNDGNSEAKADIWQQPQAFQAAIRRFNQAAAALNQAARSGNYDAVQKPMEALNQSCKSCHSRFRE
>NZ_CP031700.1|WP_151049196.1|116687_117959_-|NAD(P)/FAD-dependent-oxidoreductase
MRQTSYFHTVIIGAGAAGMMCAARTGQGGKSVALLDHAVKIGEKIRISGGGRCNFTNRNLNGHDGSPYYVSQQPRFVRYALSRYTAQDFMHLLDKYGIAYHEKHKGQMFCDDSAQAVVEMLQNECRLGSVTWYTGCTVESLTALPIAPAGYEQARFGINTDQGLFYCRNLVIATGGLAVPAVGASPFGYEVAKQFGHHIIPPEAALVPLRFEKWAEQGFDTLSGIALPVRISTGSGKQAVVFDEDLLFRHKGLSGPAVLQISSYWQPGRHIMVNLVPDTDLAEVLCRDKVGKKIQLKTALKQLCPVLPERLIDFWLGREPFQAVAGQKWADIPNALLQQLGQSLNHWTVLPTGSDGHKKAEVTRGGVDVKEINPKTMQSKQCEGLYFIGEVMDVTGWLGGYNFQWAWASAVCAAEALRADEHI
>NZ_CP031700.1|WP_151049210.1|131599_132325_-|ankyrin-repeat-domain-containing-protein
MKTFLRRTAFLLAATCVLPAYAADVNLSDFRYPLAEMQDIANPNKLSHRIFYTRPSTGPNAAWFDAVKQGKLDKVKAMVAAGQSIEAKDTGSLGQTALGWAAFIGYEDIVDYLIGQGADLHATDRGDVYNALKSAVLGKNTAIVKKLHNLLRAETDLNDQTVENDGETLIMIAASNNRLETAKYLLSQGANPNLVTTQTNRNAASYNQSALSYACVRNYPEMQKLLISHGAINHRTGKPSC
>NZ_CP031700.1|WP_151049212.1|132446_133217_-|16S-rRNA-methyltransferase
MTIVYLTESAEQPVRDIIRRFGMAESAVPPEQGSYLQADSDGISLCRVGEKGRVRVDFVGGAAQYRRTKGGGELIAKAVNHTTQPTVWDGTGGLGRDAFVLASLGLEIKVIEQNPAVACLLSDGLRRAAESGGEIAAIAARIHLYFGDTGMLLPQLSAEHGRPDVVYLDPMYPERQKSAAVKKEMAYFHDLIDTPQNEAGLLAAARKTAKKRIVVKRPRLGQFLNGEAPAYQYTGKSTRFDVYLPEPEALPTSIKA
>NZ_CP031700.1|WP_151049214.1|133431_135093_-|response-regulator
MSNNLQDPVLVVDDEADIRDLMEMTLMKMGLRVQTAVGVDDAKDKLDNNDYSLVLTDMRMPDGSGLEVVQYIDELALDTPVAVITAFGNADQAVEALRAGAFDYLQKPITLSQLRSLVKSAVKINEPSESVAATKTEAPPPKAEPTPTPPKPAMPFRPASISYPVKQPIQAPKSGSPLNRSAGIPESLRSLKERFSSGELTARLLPEHGEIGGENDMPRLLGISPQMVEVRHLIRRLAQSNVPVYISGESGTGKEQAARTIHELSERADKPFIAVNCGAIPENLMESEFFGYKKGSFTGADADRSGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQEKAVRRIGDARETYVDVRIVCATHKNLEALVESGAFRQDLYYRLNVVSLNMPPLREMREDLGGLIVHLLYKHRTSSESYKLSPKAQEALLHYSYPGNFRELENILERAVALTVGQVIQLDDLQINTGLFPSQTAEREKKDAFDEIIEAPPVGLSPGGLLPEFVPGQMQIQDYLDKIEREIIEQALKQTRYNRTQAAKLLGISFRSMRYRMERLDIH
>NZ_CP031700.1|WP_151049216.1|135082_136675_-|HAMP-domain-containing-histidine-kinase
MNVNRLFVKQDWEALNERIPGLINIARIAIVLSLLVFHLSGVYTDGETQKNMFSPLEFYSWVAVYAVLILFSLFKPEWQLQSSDLPNAGAVSDITMIMVLTYISGGIGSGFGILVLPFIATSCLLSHGRHPMLYAGYATMLIVLNMFFAGQIRFNPFEWDSHAAITASLLTGACFLVAALTAFSASYLQAATESATRHQLAYRRVSGLNRLVLNRVQEAVIVIDASQRVWLFNRQAKTYFPNLEVDKQETVFNELVSRWRFQPDKNFETDIHIFQHSMHVRAVPLIQEKTELLMLFVRSLREVAAEALATKLASLGQLTANLAHEIRNPMSAIRHASDLLNDEDENDPSKAKLHHIIDANIQRIDKMLEDVSLINRRDSVSRQPVNLMKFWLAFKQEFTLSNPDAIGCLRMNMDGNNLSVLVDAMHLQQIMWNLCNNAWRHSRKDQHAITVLIKPSGRIHISIVVADNGTGVPPEVRNHLFEPFFTTDKQGTGLGLYVARELAHANLGQLHYHPEMNGFELILPRESDEQ
>NZ_CP031700.1|WP_151049218.1|136824_139128_-|DNA-topoisomerase-IV-subunit-A
MDEKPALPVVGDDYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILYAMRDMGLVHGAKPVKSARVVGEILGKYHPHGDASAYDAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIADLLLSEINMGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVGLATEIPSHNLNEVTQAAIALLKKPSLTTADLMQYIPAPDFAGGGQIITSAEDLQHIYETGKGSVRVRARYEVEKLARGQWRVIVTELPPNTSAQKILAEIEDQTNPKPKTGKKNLTQDQQNTKALMLSLLEKVRDESDGESPVRLVFEPKSSRIDTENFINTLMAQTSLEGNVSMNLVMMGTDNRPAQKNLKTILQEWLSFRTETVTRRLQYRLSQVEKRIHILEGRMIAFLHIDEVIKVIRESDEPKSDLMAAFGLTDIQAEDILEIRLRQLARLEGFKLEKELNDLKEEEGRLKVLLGDENEKKKLIIKEMQADMKQYGDERRTLVEAAERATLTQTTADEPVTLILSEKGWIRSRAGHHLDLSQTTFKEGDGLKQVLEGRTVWPVVILDSHGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAEVTAMMTGLPDQHYLLGNSGGYGFIAKLGDMNSRIKAGKNVMTLKAGEKTLPPVPVYAVSLINPDCKVLLATDDHRLLAFSIGELEVREKGRGLQMISLSDGVRLEHLTVSTSPEFIVESVGKRGAEHKERLRMQDINNKRGRKGKLLDISGRLKALYGTD
>NZ_CP031700.1|WP_151049220.1|139404_140334_+|DUF4743-domain-containing-protein
MTRIPYFTHCLNANQQNRLQSLLTDYFDSDSWQILWLNGLKLGRLNRQWRARIIEDWPAPIEIKPQGIHLHTANWHEMGEALQTMAQNWHRQGYLRGWRDEKFDVHNANGEPLFELERSAFRPLGLLSHAVHINGLTQHNGEWVFWIGRRAAHKAVDPNKLDNIVGGGIASGESIQEAMLREAEEEAGLSRNLLESLCCQSVRHSRRPVSRGLHNEFLHIFDAILPPDTRPENQDGEVAGFTKMTVPELTDAMCSGLLMNDAMLVTLDAFARYGLLDKNHKLFQRLAETIVPPVATRKPAYAQTVAMGK
>NZ_CP031700.1|WP_151049222.1|140376_141273_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MTYTGRFAPSPTGLLHIGSLLTALASYADAKAHGGRWLVRMEDLDPPREMAGAADDILRTLEAFGFQWDGEVVYQSRRHPLYQAALGRLKKQGLIYPCYCSRKDWQARARIGIDGPIYDGQCGRPDYRPSENDLHKTPAWRLRAQDETIGFDDRIVGHYAHNPARDIGDFVLLRADGFWAYQLAVVADDADQGITHIVRGQDLLVSTPRQIGLQRYLGMPTPHYAHLPLLLNKQHQKWSKQTLAPALDLKQREQLLRQVMAYLNLPPAPETDRPSELLDWAVQHWQIDNVPKTGICTE
>NZ_CP031700.1|WP_151049224.1|141516_142800_-|pyrroline-5-carboxylate-reductase
MKKITTALTALGCAAVLSGCQTLFPAQDQVVNTIADPVDSITAVTEVSGDGQKITAAVLHYNEPVLNDSLNPEDFAVNRRTITQVYSNDRPVKGGQGKDGNYVIVELSDNDEDAVAFGVDGRDIIRRRPELKITQTGDISDVSGQVIAPSSIERQSTQTVNLVVDGFKQAEFTDPQTGTAVAYNLFVPENHRADKQYPLVLFLHDAAVSGADVQNTLQQGLGAVVWASPESQAKQEVLVLAPQFDYSAAQPYAGKSEADAVVRLIQSLQAQYNVDPARIYVTGQGEGGDMAIAMNAGYPDLFAASYIVAAPWNGTQAVPPVQGKMWIVAAEGDEKAFAGMNKATDAWAKQGTRVVRDMWSGLASPEEFDRASEAMRNQQADVYYTVLQKGTVVPSGKTESSRANQRNTWRIAYTIDSIRDWLLAQHK
>NZ_CP031700.1|WP_151049227.1|143133_143373_-|TM2-domain-containing-protein
MNVPVSYAAMYPHTCNKALYVAMALLFGGLGIHKFCAGRVWMGILYLLFSWTFIPTVVGIIEGILAAFKTTDSLGAIVV
>NZ_CP031700.1|WP_151049229.1|143593_144673_+|iron-sulfur-cluster-carrier-protein-ApbC
MNIQNIQTALEQLPIPQSMRTLGSEKAIDSVAERSDGLYIKLQFGFPVNHIRQALTEQIQTALNPLTNGAPLHIDIGLSVATHKVQPGVNTIKGVKNIIAIASGKGGVGKSTTTANLAVAMANMGARVGVLDADLYGPSQPTMLGVAQSKPEQQDKKLIPIIAEGGIQVMSIGFLVDTEQAVVWRGPMLSQALQQLLFQSQWDDVDYLFIDLPPGTGDIQLTLSQKVPVTGSVVVTTPQDIALIDARKAVDMFQKVNIPIFGVLENMSVHICSQCGHAEAIFGSDGGKNLAENLGVPLLGQLPLSLPVREAMDNGSAVQMQASQPAVAEIYTQAAWQIAQAIADKGKDFSSRFPKIVVE

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Crispr_ID: NZ_CP031700_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031700_2

687773-687873

Orphan

Consensus_repeat	Method
CCAAAGCCTGAGCAGCCAAAACAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031700_2

>merge|NZ_CP031700|2|687773-687873|CRISPRCasFinder
CCAAAGCCTGAGCAGCCAAAACAGCCTAAACCTGAAGAAATGCCACAACCCCCGGCGCCCCAACCACCGGTAGATCCAAAGCCTGAGCAGCCACAACAGCC

>NZ_CP031700|2|2|687773-687873|CRISPRCasFinder
CCAAAGCCTGAGCAGCCAAAACAGCC	TAAACCTGAAGAAATGCCACAACCCCCGGCGCCCCAACCACCGGTAGAT
CCAAAGCCTGAGCAGCCACAACAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031700.1\|WP_151050139.1\|694683_696024_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP031700.1\|WP_151052952.1\|677416_678454_+\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119334
NZ_CP031700.1\|WP_151050113.1\|678960_679773_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370126
NZ_CP031700.1\|WP_151050135.1\|690891_692673_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NZ_CP031700.1\|WP_151050119.1\|682207_683893_+\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235775
NZ_CP031700.1\|WP_151050141.1\|696120_697203_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|223155
NZ_CP031700.1\|WP_151050133.1\|690195_690615_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP031700.1\|WP_151050109.1\|675793_676261_-\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|236987
NZ_CP031700.1\|WP_151050125.1\|685586_687308_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223097
NZ_CP031700.1\|WP_151050115.1\|679910_681113_-\|uracil-xanthine-permease	unknown	unknown	gnl\|CDD\|225142
NZ_CP031700.1\|WP_151050121.1\|683902_684208_+\|integration-host-factor-subunit-beta	unknown	unknown	gnl\|CDD\|178925
NZ_CP031700.1\|WP_151050123.1\|684627_685371_+\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|239905
NZ_CP031700.1\|WP_151050145.1\|699581_700982_-\|capsule-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226092
NZ_CP031700.1\|WP_151050143.1\|697510_698743_-\|YihY-family-inner-membrane-protein	unknown	unknown	gnl\|CDD\|179791
NZ_CP031700.1\|WP_151050137.1\|692857_694537_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP031700.1\|WP_151050129.1\|688823_689423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031700.1\|WP_151050111.1\|676283_676889_-\|stringent-starvation-protein-A	unknown	unknown	gnl\|CDD\|236537
NZ_CP031700.1\|WP_151050117.1\|681392_682052_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NZ_CP031700.1\|WP_151050131.1\|689490_689937_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP031700.1\|WP_151052953.1\|698793_699402_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647

Protein	Function_ID	Function_description	E-value
NZ_CP031700.1\|WP_151050139.1\|694683_696024_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.11194e-166
NZ_CP031700.1\|WP_151052952.1\|677416_678454_+\|family-20-glycosylhydrolase	gnl\|CDD\|119334	cd06564, GH20_DspB_LnbB-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	3.07774e-85
NZ_CP031700.1\|WP_151050113.1\|678960_679773_+\|hypothetical-protein	gnl\|CDD\|370126	pfam08794, Lipoprot_C, Lipoprotein GNA1870 C terminal like. GNA1870 is a surface exposed lipoprotein in Neisseria meningitidis that and is a potent antigen of Meningococcus. The structure of the C terminal domain consists of an anti-parallel beta barrel overlaid by a short alpha helical region.	3.59284e-09
NZ_CP031700.1\|WP_151050135.1\|690891_692673_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP031700.1\|WP_151050119.1\|682207_683893_+\|30S-ribosomal-protein-S1	gnl\|CDD\|235775	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.	0
NZ_CP031700.1\|WP_151050141.1\|696120_697203_-\|prephenate-dehydratase	gnl\|CDD\|223155	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism].	2.16026e-135
NZ_CP031700.1\|WP_151050133.1\|690195_690615_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.17006e-18
NZ_CP031700.1\|WP_151050109.1\|675793_676261_-\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|236987	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional.	2.11076e-68
NZ_CP031700.1\|WP_151050125.1\|685586_687308_+\|arginine--tRNA-ligase	gnl\|CDD\|223097	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	0
NZ_CP031700.1\|WP_151050115.1\|679910_681113_-\|uracil-xanthine-permease	gnl\|CDD\|225142	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism].	1.55237e-111
NZ_CP031700.1\|WP_151050121.1\|683902_684208_+\|integration-host-factor-subunit-beta	gnl\|CDD\|178925	PRK00199, ihfB, integration host factor subunit beta; Reviewed.	1.80322e-51
NZ_CP031700.1\|WP_151050123.1\|684627_685371_+\|cold-shock-domain-containing-protein	gnl\|CDD\|239905	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.	7.53265e-09
NZ_CP031700.1\|WP_151050145.1\|699581_700982_-\|capsule-biosynthesis-protein	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	2.22667e-156
NZ_CP031700.1\|WP_151050143.1\|697510_698743_-\|YihY-family-inner-membrane-protein	gnl\|CDD\|179791	PRK04214, rbn, ribonuclease BN/unknown domain fusion protein; Reviewed.	1.19185e-168
NZ_CP031700.1\|WP_151050137.1\|692857_694537_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	8.14355e-25
NZ_CP031700.1\|WP_151050111.1\|676283_676889_-\|stringent-starvation-protein-A	gnl\|CDD\|236537	PRK09481, sspA, stringent starvation protein A; Provisional.	7.02589e-66
NZ_CP031700.1\|WP_151050117.1\|681392_682052_+\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	3.98688e-98
NZ_CP031700.1\|WP_151050131.1\|689490_689937_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.87787e-30
NZ_CP031700.1\|WP_151052953.1\|698793_699402_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	5.28424e-60

>NZ_CP031700.1|WP_151050125.1|685586_687308_+|arginine--tRNA-ligase
MNLQQIITAEAEKAFIHAGIGGEAVILQPAKNADFGDFQINGVMGAAKKAKQNPRELAQKVAAALTDNSVIERAEVAGPGFINLRLRAAFLSDGLQKALADKQRMGIAETADKKTVVIDYSSPNLAKEMHVGHLRSSIIGDSIARILGFLGHKVIRQNHVGDWGTQFGMLVAYMVEQQKADAGFELSDLEQFYRNAKIRFDEDAAFADTARDYVVKLQSGDEAVLALWKQFVEISLQHAQNVYDTLGLLLKPEDVAGESTYNHDLQAVVDDLSAKGLAVDDQGAKVVFLDEFKNQDGEASAYIVQKKGGGFLYASTDLACIRYRVGRLKADRLLYVVDTRQKLHFEQLFTLSRKAGYLPENVEAEFIGFGTMMGKDGKPFKTRSGDTVKLVDLLDEAVERATELVRQKNPELSGEDAAEIGRAVGIGAVKYADLSKNRTSDYVFDWDNMLSFEGNTAPYLQYAYTRVQSVFRKVGDWDTAADPVLTEPLEKQLAVELLKFEDVLQTAADSSYPHYLAAYLYQVATLFSRFYEACPILKAEGEARNTRLQLALLTGRILQQGLALLGIRSLEVM
>NZ_CP031700.1|WP_151050123.1|684627_685371_+|cold-shock-domain-containing-protein
MRYHGTIMRWDYELGFGFIKEEQSKAEIFAHIGEFETENPPPRDGETVSFDIVSNQRGVEEAKNIQYSNRTRKPAAQDIDFDDDTPKNLPGWLRGMVAAIVGIPLLGAAAYYGLDYWDSYRATHAGNEVVVDEVAEKMMAERAAWKQAVESTGKRQAAGQFHCDGRQYCSQMKSFAEAKFFLAYCPNVKMDGDKDGIPCEDQFEDDVRREHPELFSGNDKGEKDGLFGWLKSEDGEHGSRPKRSKRR
>NZ_CP031700.1|WP_151050121.1|683902_684208_+|integration-host-factor-subunit-beta
MTKSELMVRLAEVFAEKNGTQLMAKDVEYSVKVLVDTMTRSLAKGQRIEIRGFGSFDLNRRPARVGRNPKTGERVEVPEKFVPHFKPGKELRERVDQAIES
>NZ_CP031700.1|WP_151050119.1|682207_683893_+|30S-ribosomal-protein-S1
MTMENFAQLLEESFTLQEMNPGEVITAEVVAIDNNFVTVNAGLKSESLIDVSEFKNAQGEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGVINGKVKGGLTVMINSIRAFLPGSLVDVRPVKDTSHFEGKEVEFKVIKLDKKRNNVVVSRRAVLEVTLGEERKALLENLQEGAVVKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDPWTGLTRRYPQGTRMFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEDRRRISLGMKQCQPNPWEEFAANHNKGDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDPFGNFISVNDKGSLVKGTAKSVDAKGAVITLSDDVEAYLPAAEWSSERVEDLRNVLKEGDEVEAVVATVDRKNRSIKLSVKAKDAKDSREALNTVNASSTASAGTTSLGDLLKAKLSGDQE
>NZ_CP031700.1|WP_151050117.1|681392_682052_+|(d)CMP-kinase
MNLNRKIIAIDGPSASGKGTVASRVAAALGFDYLDSGALYRLTALYAQQQSVSWEDEDAVAGLAENLPVVFEANIIRLNGQDVSDAIRSEEIGMGASTVARFPKVRAALLQRQRHFLTDKGLVGDGRDMGSVVFPDAALKVFLTASARIRAERRAAQIGIPTEGVAFERILSDIETRDEADRRRAVAPLKQLPDAYLLDTSDLSIEQAVKKVLDWYAQI
>NZ_CP031700.1|WP_151050115.1|679910_681113_-|uracil-xanthine-permease
MQQLKLAISGAQILFVAFGAMVLVPLLTGLNPSMALLGAGIGTLLFQVVTRFKVPVFLGSSFAFIAPIIYSISEWGLPSTMFALFAAGFMYFVFAGLVKWRGLATVNRLLPPVVIGPVIMVIGLSVAMVASQMAMGQAGGEQAVDYTQSLILSGFTFAVTVIVAVFGSKMMKLVPILIGVVAGYIAALFMGLVDTTPIINAPWFAKPDFITPQINWQAALFMLPVAIAPAIEHIGGVMAIGKVTGNDYVKDPGLHKTLAGDGLGVCVAGLIGGPPVTTYGEVTGAVMITKNSNPKIMTWAAIFAICMAFFGKFNAFLASIPLPVMGGIMILLFGTIASLGLKTLIDAHVDLMKPKNLVIVSSVLTTGVGGMVIKFGSISFAGVGLCAILAIILNRLLPDE
>NZ_CP031700.1|WP_151050113.1|678960_679773_+|hypothetical-protein
MSTYNKIGLAVFLAFGLAACGGGGSGSPSAAATSTNQSSNAAFRDAMPSASAQAVNLTDASAGSVYNAAAYKINLDGKSYKVSDLASDKVTNLVNQEGNETVRTYRQQFSIIAGRFSSEKIGGENLKDDPEMTTAVAEVKNPMVVGLVNGEATQTLPTSGKYAYNGAAFGETEIGKLTYNVDFDKRVGSGSVTGLASSGKIDLLEASIKNTSFNNEIDGTLVTTQGIEGHSNSEKLGKGDYKVHFFGKNAEEIGGAIMQKNGEIGIAGKR
>NZ_CP031700.1|WP_151052952.1|677416_678454_+|family-20-glycosylhydrolase
MLDTARHFYSVNVIKNFIDNLAASGGSFLHLHFSDHENYALESDLLGQKVENATRRKDGVYINPQTGKPFLSYRQLQELIRYAQSKNIEVIPEVGSPNHMDGIFRLLAHKHGQGYVDSLKSTQVDDEININKPESIEFMKKLITEVADAFGSQSKHFHIGGDEFGYSEENNQEFIDYANKLASFLEQKGLTPRLWNDGLITKTVDGLNRNIQITYWSYDGDTENQVAAVRRRKIRASMPDLIDKGFTVLNYNSYYLYLVPKEGGNFSHEANFAGQDIEKRWNLGVWDGENVNNAVRNTDNILGAALAIWGEDAGRLSDKSIQEHSSGTLKAVIRKIRANDNQAGE
>NZ_CP031700.1|WP_151050111.1|676283_676889_-|stringent-starvation-protein-A
MMTLYSGITCPFSQRCRFVLFEKGMDFEIKDVDIFNKPEDLAIMNPYNQVPVLVERDLILHESNIINEYIDERFPHPQLMPGDPVMRGRGRLVLFRMEKELFRHVQLLESADASSKEQSKAREAIANGLTMLAPAFSKTKFIMGDEFSMIDVALSPLLWRLDHYDIKLGKSAAPILKYAERIFQREAFIEALTPAEKAMRR
>NZ_CP031700.1|WP_151050109.1|675793_676261_-|ClpXP-protease-specificity-enhancing-factor
MNSTKPYLIRALYEWCMDNNQTPHIAVWVNEHTRVPMQYVRENEIVLNIGTTASHNLNIDNEWINFSARFSGVAHEIWIPIGHVISIFARESGEGMGFEVEPYQTESEKQGVEPLHLVEKETADSAEEKPSENKDDTPPPENGGTKPKKGLKLVK
>NZ_CP031700.1|WP_151050129.1|688823_689423_+|hypothetical-protein
MLSACSPSENQALAAEPSVPVVSSTSVTKPVPVYRGNFLKDAAALAKAEHDLKTLPRFHGKSLKFFDNIVFFSGPRPRIELDIQNPENPERIDHYVYWQGTWRRNDILRKPPPPESLNIAQHLTPLSQVRFADVAVVAKEWEQKARSVNAVETDAYYVSFVYLRSENKHFWHTATIEAIGAQYYLSFHTDKTVWEFKKL
>NZ_CP031700.1|WP_151050131.1|689490_689937_-|universal-stress-protein
MYQRIMVPVDDSKASLYALKEACKLAKQLDATVLAVHVVDIAQFEFSTVSITDTVALRKAVEKAGIEILERTEQEIRQAGVKSENLIMESAGDKIADVLVSQAGSEHCDLIVMGTHGFTGLKHLLMGSVAEGVVRQSNIPVLLVRRQD
>NZ_CP031700.1|WP_151050133.1|690195_690615_-|DoxX-family-protein
MFNPNVLVKNIVTNPTMHALISLIARAFLVYLFLVSGWGKIDKFDGVVAHMEGMGVPGALLPLTILLEVGGGIAILFGFQTRILALLLAAFTLISALIFHAAPEDAVQMMKNFGITGGFLLLMLTGAGAWSIDHLIEKK
>NZ_CP031700.1|WP_151050135.1|690891_692673_-|ABC-transporter-substrate-binding-protein
MKLSTALFLLFTTISTSAYAAHGLALGQQVLHPAGFQSFNYVNPNAPKGGTFTLPLPGGFDTLNPFTLKGDHEAGVGTLTLDTLTAKGQDEPFAMYGLIAEDMELAPDGLAVTFKINPKARFQNGDPVLAEDVAASFNTLTQDKAASPQYRFYWADVDRVETPSKRTVVFRFKKPNAELHMILGQLPVFSHKSYPKGLAAGANAIPIGSGPYRLSKAENGRLSEFQRDKNYWAQNLPTRKGMYNFDTVRFKYYKDDTVRIEGLKGGNYDFMQENTARHWARSYTDKILAKNNLSKHDWTQQSTAGMQGFVMNLRRKPFDDIRIRQALMLSFDFESLNNRLFYGLYTRSNSFFTNSEMAATGKPEGRELAILNTARSNLPAAVFTKNVPEPPKTDAVLGIRPNLLKARALLEQAGYRYQNGVLVDKQGTPLAIEYLTYSKTFERVVAKWQRDLAKIGIRLNIRLADPAIYQQRLNRFDFDITTVVYGNSESPGNEQFSYFSCDAAKTNGSQNWAGVCDPAVETLLKRFENFRSRDELVAVARALDRTLRHQYIIIPNWYTNRYRVVYRDTLGIPAKQPKYYSATDWILSTAWQK
>NZ_CP031700.1|WP_151050137.1|692857_694537_+|glycosyltransferase-family-39-protein
MLTYTPTPPRSSPSFRERPWLLLLLAVAWLLPGIFSRDLWHPAEPAVFTAIEEFFAGGNMWLPTVLQQPYFEASPVYIWVAALFQKLLYPWAADAYAATRFASLLFTVIGLMCCGNAGFRLLGQHQGRSVALILIGCTGLLTMTHFLTGYSVVFAALGMCLYGFSLAPTRVIMASLLLGGGWALLSVSVGFLVPSTLMLTALVLPLSSHWRFKRYYLTLIGAFVFAWPLMSVYPFALLKSNTAAFSLWWNDFMFGPFGGMNNFQTAFSLPYYLKNILWFAFPAWPLAIWTLTRSKLAQHGWGVLASAWLLVIGFLLAINPHQYQEHLVWLLPPLALLGAAQLDGLRRGAAAFINWFGMMTFGLLAIFLWIGFFAMNYGWPEKLAERSHYFSPYYTPEINTIPLVVALLFTPIWLWAITRKHIRGRQAVTNWAAGVTLVWALMMTLFLPWLDAAKSHAPVVRQMEAALSPELKTALSNKLACIGVDRNARTARIAWAQYGTINLATDADECRYRLVQQPKGSAVPQEWDLIWEGARPRNKTEGFALLARHKPKDDIKPIE
>NZ_CP031700.1|WP_151050139.1|694683_696024_+|NCS2-family-permease
MNTSQNGLLERLFKLNEHGTNVRTELLAGFTTFLTMCYIVIINPSILSITGMDFGAVFVATCISAAIGCFIMGALANYPIALAPGMGLNVYFTFSVVSGMKVPWQVALAAVFVSGIIFLLFSFFKIREMLVNALPMSLKMAIAAGIGLFLALIALKNAGLIVGSPDTLVKMGEFFVIEEGVKLPNWPVLLALLGFFLIVVLDYFRIRGAIIISIFAVTLLAIVMGLTEFQGVIDPIPSVAPTFMQMDFNGLFNGSMIAVIFVFFLVDLFDSTGTLVGVSHRAGLLVDGKLPRLKKALFADSTAIVAGAVLGTSSTTPYIESASGVSAGGRTGLTAVTVGILMLACLWFSPLAKTVPAFATAPALLYIGVQMLRSVIEIDWKDITEAAPAFLTIVFMPFTYSIADGIAMGFISYAVIKLLCGRTKDVPPMVWIVAIAWISKFWFLGA
>NZ_CP031700.1|WP_151050141.1|696120_697203_-|prephenate-dehydratase
MSADDKLLPHRNAIDEIDATILSLLNKRAGHARAIGELKGTGTVYRPEREAAVLRRIQDLNPGPLPNEAVARLFREIMSECLAVERPLTISYLGPEGTFTQQAAIKHFGHAATTQACATIDEGFRLVEARQADYVVTPVENSTEGSVGRTLDLLSVTPLYACGEVVLRIHHHLLSKNHTDTRNITKVYAHAQALAQCHEWLNRNLPGAMRISVSSNAEAARLAAESDDSTVAAIAGQIAAEIYQLAKIADSIEDEPNNTTRFLVLGHQATTPTDHDKTSLVVSTPNKAGAVSMLLKPFTEKGISMTKFESRPSRSGLWDYLFFIDIEGHKDEPRIQEALAELAERASFVKVIGSYPTAVL
>NZ_CP031700.1|WP_151050143.1|697510_698743_-|YihY-family-inner-membrane-protein
MPNLSKVQAMRDSRLVGFLLFVLKRFNEIRVPQVAASLTFTTLLALVPVLTVTLAVVSAFPMFDGLSASFIQFVNKTIVPQGADTVFEYIGEFKDKASQLTAIGVIMLGVTSLMLIQTIDQTFNRIWRMNSQRPMLMQFLVYWALLTLGPLALAIGASLWSSMLKYNLFGAEYSFLSSIVRLVMSLLFSTILLWLLYRLIPKRFVPAKHALIGAAITAVLLEAARYGFAWYISTFQGYALIYGAFAAVPLFLLWLNLLWMLVLSGAVLTSSLSYWQGEAFRRNLDARGRFDDVLKILLMLHEAQVEGKALKVQDIRPTINMGYDELGELLEKLARHGYVYQGKQGWVLKTNAESIELADLFKLFVYKPNAMNKDHVNVVVGNIMQPCLETLGMSLAEFDIKTQKLPDSVR
>NZ_CP031700.1|WP_151052953.1|698793_699402_+|NAD(P)H:quinone-oxidoreductase
MNQKPLKILVVYYSLHGSTLNLARQIVRGIESVEGCEAVLRTVPKVSAVCEAVENDIPEQGAPYASAEDLKNCAGLALGSPTRFGNMAAPVKYFLDGTASEWLGGELIGKPATVFTSTSGQHSGQESTLLTMMLPLLHHGMVISGVPFSEAALMQTQAGGTPYGASHVAGHDGRTPLSHEEQQIAFAQGKRLAELALKLAKN
>NZ_CP031700.1|WP_151050145.1|699581_700982_-|capsule-biosynthesis-protein
MGKIYTKSNLETLTFQSKRLLLLQGPIGSFFKDFSQWLTDKHAKTVFKLNFNYGDEYFYPEDIPNTFAYRDTYQAFPDKLAAFIAEHEIDTIVCFGDARPYHQIAKQTAAAQGLDFWAFEEGYFRPFYITLEKSGVNAFSPLPRCATFFQKQLSSLPQTVYQEPPVIKGGFVPMAKCAMRYYWAANRRSKSYPHYIHHRMMDIPVYIRSWALSGIKRLLYVLKDYKFARAVKNGRYGKFYILPLQVFNDSQVRVHSDFSSVRSFLLHVLTSFATHAPEDTNLIVKHHPMDRGFTNYRKDIQQLIKKHPELKKRIFYVHDTSLPTLLRHGIGMVTLNSTSGLSALIHNMPVKVLGRCSYDIAGITYQNSLAQFWKQPTPPNPELFHAYRMYHLNVTQIHGNFYSKVSLPEIANEKHIAIHPIEVGNSYMAAYHCSSIHSPLIPNHSLQNSNYIPVSARYSLNNHNSK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP031700_1	1.1\|131335\|34\|NZ_CP031700\|PILER-CR,CRISPRCasFinder,CRT	131335-131368	34	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	172404-172437	8	0.765
NZ_CP031700_1	1.1\|131335\|34\|NZ_CP031700\|PILER-CR,CRISPRCasFinder,CRT	131335-131368	34	NZ_CP054057	Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence	29678-29711	10	0.706

1. spacer 1.1|131335|34|NZ_CP031700|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 8, identity: 0.765

ggcggccttg---ttgttaagcaaggcagcgcgcccg	CRISPR spacer
---tatcttgcgcttgataagcaaggcagagcgcccg	Protospacer
    ..****   *** ************ *******

2. spacer 1.1|131335|34|NZ_CP031700|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054057 (Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence) position: , mismatch: 10, identity: 0.706

ggcggccttgttgttaagcaaggcagcgcgcccg	CRISPR spacer
cgcggccttgttcttgagcaaggcagtcttgtct	Protospacer
 *********** **.**********. .  .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1321643 : 1369647

uncultured_Caudovirales_phage(70.0%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151051159.1\|1321643_1321844_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	2.8e-05	45.5
WP_151051161.1\|1322062_1322287_-	hypothetical protein	NA	NA	NA	NA
WP_151051162.1\|1322593_1323499_-	hypothetical protein	NA	NA	NA	NA
WP_151051164.1\|1323538_1323931_-	hypothetical protein	NA	NA	NA	NA
WP_151051167.1\|1324361_1324637_-	hypothetical protein	NA	NA	NA	NA
WP_151051169.1\|1325844_1326336_-	hypothetical protein	NA	NA	NA	NA
WP_151051171.1\|1326329_1330553_-	RHS repeat protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.2e-25	35.4
WP_151051173.1\|1330832_1331420_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_151051175.1\|1331428_1332496_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_151051177.1\|1332556_1333075_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_151051179.1\|1333116_1334613_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_151051181.1\|1334688_1335171_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_151051183.1\|1335302_1336118_+	ImpE protein	NA	NA	NA	NA
WP_151051185.1\|1336146_1336659_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_151051187.1\|1336651_1338625_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_151051189.1\|1338621_1339659_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_151051191.1\|1339744_1342381_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.6e-79	31.5
WP_151051193.1\|1342519_1343146_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_151051195.1\|1343178_1344522_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_151051197.1\|1344545_1345799_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_151051199.1\|1345851_1349409_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_151051201.1\|1349508_1351782_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	8.2e-24	22.3
WP_151051203.1\|1351800_1352967_+	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_151051205.1\|1353018_1357311_+	DUF4150 domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.4e-27	37.1
WP_151051206.1\|1357953_1362105_+	DUF4150 domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.6e-25	35.3
WP_151051208.1\|1362121_1362562_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_151051210.1\|1362610_1363606_+	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	2.0e-27	46.0
WP_151051212.1\|1363626_1363950_+	hypothetical protein	NA	NA	NA	NA
WP_151053002.1\|1364020_1365388_+	hypothetical protein	A0A2H4JFP5	uncultured_Caudovirales_phage	7.3e-28	37.1
WP_151051214.1\|1366091_1367210_+	hypothetical protein	A0A2H4JFP5	uncultured_Caudovirales_phage	9.3e-29	36.9
WP_151053003.1\|1367276_1367450_+	hypothetical protein	NA	NA	NA	NA
WP_151053004.1\|1367472_1367967_+	sel1 repeat family protein	NA	NA	NA	NA
WP_151053005.1\|1368230_1368596_+	RHS repeat protein	NA	NA	NA	NA
WP_151049983.1\|1368639_1369647_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.7e-18	27.8

DBSCAN-SWA_2

1566548 : 1613236

Agrobacterium_phage(15.38%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151053018.1\|1566548_1566647_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_151051557.1\|1566618_1566795_-\|transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	2.6e-07	57.8
WP_151051559.1\|1566954_1567797_-\|protease	protease HtpX	NA	NA	NA	NA
WP_151053019.1\|1568127_1570698_+	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_151051561.1\|1570966_1571968_+	bile acid:sodium symporter family protein	NA	NA	NA	NA
WP_151051563.1\|1572190_1573537_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	1.3e-29	37.3
WP_151051565.1\|1573526_1573790_+	glutaredoxin family protein	NA	NA	NA	NA
WP_151051567.1\|1573827_1574742_-	DMT family transporter	NA	NA	NA	NA
WP_151051569.1\|1574839_1575745_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_151051570.1\|1575805_1576642_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_151051572.1\|1577009_1577918_+	recombination-associated protein RdgC	L7TP07	Pseudomonas_virus	6.8e-46	35.8
WP_151051575.1\|1578022_1578589_+	dCTP deaminase	S5VM63	Pseudomonas_phage	7.4e-75	72.0
WP_151051577.1\|1578727_1579498_+	J domain-containing protein	NA	NA	NA	NA
WP_151051579.1\|1579666_1583656_+	AAA family ATPase	NA	NA	NA	NA
WP_151051581.1\|1583652_1585671_+	hypothetical protein	NA	NA	NA	NA
WP_151051583.1\|1585663_1586188_+	hypothetical protein	NA	NA	NA	NA
WP_151051585.1\|1586211_1587342_+	hypothetical protein	NA	NA	NA	NA
WP_151051587.1\|1587358_1589182_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2L0V0F4	Agrobacterium_phage	2.2e-40	36.0
WP_151051589.1\|1589191_1589776_+	radical SAM protein	A0A1Z1LYX8	Serratia_phage	1.5e-06	30.1
WP_151051591.1\|1589884_1590394_-	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	2.0e-39	63.0
WP_151051593.1\|1590377_1591778_-	MFS transporter	NA	NA	NA	NA
WP_151051595.1\|1591902_1592532_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_151051597.1\|1592658_1595961_-	cell division protein FtsK	G1FGP1	Mycobacterium_phage	2.1e-84	49.1
WP_151051599.1\|1596268_1597147_+	cupin-like domain-containing protein	NA	NA	NA	NA
WP_151051601.1\|1597255_1598002_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.7e-24	31.8
WP_151051604.1\|1598008_1598563_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_151051606.1\|1598567_1598765_-	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_151053020.1\|1598821_1599145_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_151051608.1\|1599275_1599599_-	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_151051610.1\|1599696_1600101_-	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_151051612.1\|1600256_1601015_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_151051614.1\|1601048_1601594_-	hypothetical protein	NA	NA	NA	NA
WP_151051616.1\|1601643_1602411_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_151051618.1\|1602521_1602839_-	multidrug transporter MatE	NA	NA	NA	NA
WP_151051620.1\|1602958_1603708_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_151051622.1\|1603810_1604455_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_151051624.1\|1604658_1605852_+	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_151051626.1\|1606097_1606880_+	hypothetical protein	NA	NA	NA	NA
WP_151051628.1\|1606899_1608465_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.1e-22	32.8
WP_151053021.1\|1608603_1608942_-	hypothetical protein	NA	NA	NA	NA
WP_151051630.1\|1609059_1609506_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.1e-28	50.0
WP_151051632.1\|1609571_1609790_-	DUF1653 domain-containing protein	NA	NA	NA	NA
WP_151051634.1\|1609824_1610034_-	branched-chain amino acid ABC transporter	NA	NA	NA	NA
WP_003682902.1\|1610181_1610385_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.6e-22	78.8
WP_151051636.1\|1610626_1610941_+\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_151051638.1\|1610941_1613236_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.4e-164	42.2

DBSCAN-SWA_3

1656374 : 1664385

Indivirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151051714.1\|1656374_1657169_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	3.2e-07	25.7
WP_151051716.1\|1657165_1658071_-	ABC transporter permease	NA	NA	NA	NA
WP_151051718.1\|1658210_1659212_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_151051720.1\|1659505_1660138_+	7-carboxy-7-deazaguanine synthase QueE	A0A1V0DYC7	Dinoroseobacter_phage	4.3e-15	34.0
WP_151051722.1\|1660177_1660489_-	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	6.8e-14	57.6
WP_151053024.1\|1660680_1661814_-	ribonucleotide-diphosphate reductase subunit beta	W6AT53	Erwinia_phage	1.4e-162	74.5
WP_151051723.1\|1661859_1662087_-	DUF2188 domain-containing protein	E8ZD70	Streptococcus_phage	1.3e-14	54.8
WP_151051724.1\|1662105_1664385_-	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	2.4e-302	67.2

DBSCAN-SWA_4

2392226 : 2400250

Erwinia_phage(16.67%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151052888.1\|2392226_2392679_+	dUTP diphosphatase	G0YQD9	Erwinia_phage	1.2e-48	70.6
WP_151052889.1\|2392865_2393693_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	A0A127AWE5	Bacillus_phage	3.9e-16	25.3
WP_151052890.1\|2393833_2395132_-\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	7.3e-86	42.9
WP_151052891.1\|2395351_2397214_-	acyltransferase	W6MVL2	Pseudomonas_phage	7.3e-55	29.5
WP_151052892.1\|2397491_2398499_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	8.6e-18	27.8
WP_151052893.1\|2398676_2398949_-	cell division protein FtsB	NA	NA	NA	NA
WP_151052894.1\|2398963_2400250_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.4e-145	62.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031700

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection