CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP026369	Klebsiella quasipneumoniae strain A708 plasmid pA708-1, complete sequence	0 crisprs	RT	0	3
NZ_CP026371	Klebsiella quasipneumoniae strain A708 plasmid pA708-3, complete sequence	0 crisprs	NA	0	2
NZ_CP026370	Klebsiella quasipneumoniae strain A708 plasmid pA708-2, complete sequence	0 crisprs	RT	0	2
NZ_CP026368	Klebsiella quasipneumoniae strain A708 chromosome, complete genome	4 crisprs	csa3,cas3,RT,DEDDh,DinG,WYL	3	12

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5481 : 12087

Salmonella_phage(55.56%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014839971.1\|5481_5694_-	hypothetical protein	J9Q804	Salmonella_phage	3.0e-13	50.0
WP_017900702.1\|6183_6468_-	hypothetical protein	NA	NA	NA	NA
WP_017900703.1\|6464_6872_-	hypothetical protein	H6WRY2	Salmonella_phage	3.5e-18	56.1
WP_017900704.1\|6964_7288_-	hypothetical protein	E5AGF3	Erwinia_phage	1.6e-13	46.9
WP_017900705.1\|7288_8362_-	hypothetical protein	A6N3G8	Burkholderia_virus	1.1e-18	56.8
WP_014839970.1\|8365_8590_-	hypothetical protein	B1GS76	Salmonella_phage	2.3e-08	51.2
WP_087525963.1\|8855_9590_-	hypothetical protein	A0A1V0E5L5	Salmonella_phage	9.4e-14	36.3
WP_062878103.1\|9582_9771_-	hypothetical protein	NA	NA	NA	NA
WP_014839969.1\|9917_10163_-	hypothetical protein	S5MQM0	Escherichia_phage	6.1e-18	65.8
WP_025999286.1\|10227_10839_-	hypothetical protein	NA	NA	NA	NA
WP_087525964.1\|10881_11085_-	hypothetical protein	K7PLX1	Enterobacteria_phage	1.4e-15	62.7
WP_014839967.1\|11766_12087_-	hypothetical protein	J9Q750	Salmonella_phage	8.2e-31	53.8

DBSCAN-SWA_2

116544 : 144654

Salmonella_phage(37.5%)

transposase,integrase

attL 124812:124828|attR 156145:156161

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014839933.1\|116544_117678_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_017900677.1\|117851_118106_+	transcriptional regulator	NA	NA	NA	NA
WP_049593898.1\|118192_119254_+	hypothetical protein	NA	NA	NA	NA
WP_014839932.1\|120150_121035_-	hypothetical protein	A0A1B0VDL5	Salmonella_phage	9.8e-50	41.1
WP_017900953.1\|121606_122212_-	hypothetical protein	NA	NA	NA	NA
WP_014839931.1\|122799_123141_+	hypothetical protein	NA	NA	NA	NA
WP_000427614.1\|123469_124474_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_048336622.1\|124552_127522_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
124812:124828	attL	NA	NA	NA	NA
WP_001162012.1\|127524_128082_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_001447826.1\|128119_128443_-	hypothetical protein	NA	NA	NA	NA
WP_000845039.1\|128387_129401_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_015060105.1\|129553_130294_+	subclass B1 metallo-beta-lactamase IMP-4	NA	NA	NA	NA
WP_048336621.1\|130383_131733_-	group II intron reverse transcriptase/maturase	H7BV81	unidentified_phage	3.3e-12	28.3
WP_015063357.1\|132472_132805_+	quaternary ammonium compound efflux SMR transporter QacG2	NA	NA	NA	NA
WP_003159191.1\|132931_133486_+	aminoglycoside N-acetyltransferase AAC(6')-Ib4	NA	NA	NA	NA
WP_010466370.1\|134141_134540_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_003089115.1\|134614_134965_+	mercury transporter MerT	NA	NA	NA	NA
WP_003150552.1\|134977_135253_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_003089113.1\|135260_135473_+	hypothetical protein	NA	NA	NA	NA
WP_003299771.1\|135485_138479_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	5.7e-259	47.6
WP_003089107.1\|138892_139132_-	hypothetical protein	NA	NA	NA	NA
WP_000904941.1\|139229_139844_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.6e-37	50.3
WP_001087809.1\|139896_140133_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_010466447.1\|140129_140495_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000136268.1\|140511_142158_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-39	28.3
WP_000654684.1\|142154_142400_-	mercury resistance system transport protein MerF	NA	NA	NA	NA
WP_000735441.1\|142402_142678_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294667.1\|142693_143044_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000429838.1\|143115_143550_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000427619.1\|143649_144654_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
156145:156161	attR	NA	NA	NA	NA

DBSCAN-SWA_3

155936 : 188086

Escherichia_phage(27.27%)

integrase,transposase

attL 180766:180825|attR 186922:188119

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151114725.1\|155936_158750_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.2e-183	39.3
WP_001067855.1\|158817_159522_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000557454.1\|159754_160615_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_000587837.1\|160627_161170_+	AAA family ATPase	NA	NA	NA	NA
WP_000951934.1\|161651_161843_-	hypothetical protein	NA	NA	NA	NA
WP_001330846.1\|161848_162094_+	hypothetical protein	NA	NA	NA	NA
WP_000080861.1\|162144_163281_+	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_000971921.1\|163395_164766_+\|transposase	IS1182-like element ISCfr1 family transposase	NA	NA	NA	NA
WP_000027057.1\|165586_166447_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001161490.1\|169663_170224_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_010635893.1\|170304_170592_-	hypothetical protein	NA	NA	NA	NA
WP_000845048.1\|170560_171574_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_063840321.1\|171865_172420_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001334766.1\|172550_173381_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_000186237.1\|173518_174151_+	type B-3 chloramphenicol O-acetyltransferase CatB3	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
WP_001749986.1\|174235_174688_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_000679427.1\|174910_175258_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|175251_176091_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|176495_178037_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_014839891.1\|178388_179630_+	tellurium resistance protein TerF	A0A2D1GNA9	Pseudoalteromonas_phage	8.2e-10	25.5
WP_014839892.1\|179657_180308_-	HAD-IB family hydrolase	NA	NA	NA	NA
180766:180825	attL	NA	NA	NA	NA
WP_014839893.1\|180913_181930_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	3.7e-186	99.4
WP_001752311.1\|182144_183176_+\|transposase	IS630-like element ISEc33 family transposase	NA	NA	NA	NA
WP_017901373.1\|183700_183886_+	hypothetical protein	NA	NA	NA	NA
WP_077252868.1\|183901_184051_-	DinI-like family protein	NA	NA	NA	NA
WP_017901372.1\|184214_185318_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.0e-120	62.1
WP_071600436.1\|185376_186090_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_014839893.1\|187069_188086_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	3.7e-186	99.4
186922:188119	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP026371

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1687 : 41338

Escherichia_phage(58.33%)

protease,integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|1687_2392_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001549941.1\|2610_3573_-	carbamate kinase	NA	NA	NA	NA
WP_001549942.1\|3569_4991_-	DUF1116 domain-containing protein	NA	NA	NA	NA
WP_055316428.1\|5000_6551_-	acyl-CoA synthetase FdrA	NA	NA	NA	NA
WP_072193879.1\|6646_7090_-	DUF2877 domain-containing protein	NA	NA	NA	NA
WP_100160450.1\|7722_9033_-	purine permease	Q9KX94	Enterobacteria_phage	4.4e-30	27.2
WP_001549947.1\|9148_10252_-	ring-opening amidohydrolase	NA	NA	NA	NA
WP_001549948.1\|10304_11540_-	hypothetical protein	NA	NA	NA	NA
WP_055316696.1\|11987_12911_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	1.0e-174	98.4
WP_001124949.1\|15415_15637_-	hypothetical protein	NA	NA	NA	NA
WP_151114784.1\|16211_17012_-	DsbA family protein	NA	NA	NA	NA
WP_151114789.1\|17363_18344_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.6e-184	98.5
WP_000780222.1\|18621_18903_-	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_000493286.1\|18883_19213_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
WP_001572362.1\|20258_21281_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_016236507.1\|21502_21838_-	hypothetical protein	NA	NA	NA	NA
WP_105318624.1\|22327_23332_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_060617172.1\|23575_24352_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_009653916.1\|24487_24742_-	hypothetical protein	NA	NA	NA	NA
WP_004098928.1\|24817_25075_-	hypothetical protein	NA	NA	NA	NA
WP_004098931.1\|25123_25327_-	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_101740016.1\|25360_25729_-	hypothetical protein	NA	NA	NA	NA
WP_049106297.1\|25772_26267_-	hypothetical protein	NA	NA	NA	NA
WP_151114795.1\|26297_26864_-	hypothetical protein	NA	NA	NA	NA
WP_013023778.1\|26860_27124_-	hypothetical protein	NA	NA	NA	NA
WP_071571078.1\|27473_27668_-	hypothetical protein	NA	NA	NA	NA
WP_001568025.1\|27719_27938_+	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_001568026.1\|27939_28245_+	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_025380813.1\|28449_28809_+	hypothetical protein	NA	NA	NA	NA
WP_022644730.1\|28835_29159_+	hypothetical protein	NA	NA	NA	NA
WP_020315256.1\|29155_30172_+	hypothetical protein	NA	NA	NA	NA
WP_004197635.1\|30369_31164_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.5e-52	88.7
WP_006788217.1\|31603_31783_-	hypothetical protein	NA	NA	NA	NA
WP_004197649.1\|31902_32529_-	ParA family plasmid-partitioning AAA ATPase	A0A222YXS3	Escherichia_phage	2.9e-40	43.6
WP_004197644.1\|33169_34045_-	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	1.1e-82	56.8
WP_101857424.1\|34456_35728_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	8.9e-153	63.7
WP_048322265.1\|35727_36159_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_009483812.1\|36316_36568_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|37942_38647_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_150073787.1\|40321_41338_-\|protease	CAAX protease	NA	NA	NA	NA

DBSCAN-SWA_2

48817 : 57115

Faecalibacterium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032744253.1\|48817_49519_+	methylase	A0A2K9VH43	Faecalibacterium_phage	2.6e-21	34.3
WP_020804418.1\|49518_49740_+	hypothetical protein	NA	NA	NA	NA
WP_020804419.1\|49785_50196_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_020804421.1\|50242_51007_+	hypothetical protein	NA	NA	NA	NA
WP_064181679.1\|51438_51867_+	antirestriction protein	A9J566	Pseudomonas_phage	2.8e-10	31.9
WP_020803879.1\|51911_52418_+	antirestriction protein ArdA	G9FHQ1	Rhodococcus_virus	6.9e-08	31.9
WP_020803881.1\|52458_52650_+	hypothetical protein	NA	NA	NA	NA
WP_039698518.1\|52850_53114_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	3.4e-14	53.8
WP_150073638.1\|53138_53459_+	hypothetical protein	NA	NA	NA	NA
WP_135708424.1\|53622_53805_-	hypothetical protein	NA	NA	NA	NA
WP_064343514.1\|54211_54748_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	5.9e-50	73.2
WP_064343515.1\|54797_55046_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_048757533.1\|55114_57115_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	3.0e-22	27.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP026370

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14707 : 53845

Stx2-converting_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004181747.1\|14707_16246_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.1e-273	91.8
WP_004114612.1\|16295_16643_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.1e-60	96.5
WP_004118218.1\|16639_17017_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-58	92.1
WP_023280906.1\|17386_18694_-	hypothetical protein	NA	NA	NA	NA
WP_021312494.1\|18690_20847_-	AAA domain-containing protein	K4I1H4	Acidithiobacillus_phage	5.2e-36	41.7
WP_021312679.1\|22931_23327_-	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_077259381.1\|23375_24722_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_087796141.1\|24983_25691_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_151114741.1\|25847_27194_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004187044.1\|27404_27887_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003026799.1\|27874_28141_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_023329017.1\|29252_30062_-	N-formylglutamate deformylase	NA	NA	NA	NA
WP_057072740.1\|30054_31263_-	imidazolonepropionase	NA	NA	NA	NA
WP_001118616.1\|31852_32776_-\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	1.1e-176	99.3
WP_004150739.1\|32928_33132_-	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_032414151.1\|33192_33687_-	hypothetical protein	NA	NA	NA	NA
WP_032414152.1\|33717_34284_-	hypothetical protein	NA	NA	NA	NA
WP_151114746.1\|34280_34532_-	hypothetical protein	NA	NA	NA	NA
WP_004118349.1\|34845_35025_+	antitoxin	NA	NA	NA	NA
WP_009654306.1\|34990_35110_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_048293723.1\|35488_35923_-	hypothetical protein	NA	NA	NA	NA
WP_004152084.1\|36139_37540_-	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_001188930.1\|37536_38217_-	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004118344.1\|38271_39201_-	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_000025662.1\|39205_39586_-	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_130943622.1\|39625_40516_-	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_048298742.1\|40521_42339_-	multicopper oxidase PcoA	NA	NA	NA	NA
WP_065800056.1\|42788_43712_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	5.6e-173	97.4
WP_042922367.1\|44270_45695_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_015065528.1\|45694_46435_-	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
WP_004144423.1\|46421_46988_-	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
WP_004144424.1\|47007_47313_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_004194426.1\|47326_47695_-	type IV conjugative transfer system pilin TraA	NA	NA	NA	NA
WP_004208838.1\|47748_48120_-	TraY domain-containing protein	NA	NA	NA	NA
WP_072271345.1\|48203_48899_-	conjugal transfer protein TraJ	NA	NA	NA	NA
WP_032441878.1\|49105_49498_-	relaxosome protein TraM	NA	NA	NA	NA
WP_001568108.1\|49932_50418_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_001568110.1\|50450_50765_-	hypothetical protein	NA	NA	NA	NA
WP_023316395.1\|50812_51634_-	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	8.8e-45	40.1
WP_032409235.1\|52350_52587_+	hypothetical protein	NA	NA	NA	NA
WP_151114751.1\|52555_53845_-\|transposase	ISL3-like element ISPpu12 family transposase	A0A2D1GQC1	Lysinibacillus_phage	9.5e-86	40.4

DBSCAN-SWA_2

60503 : 105556

Macacine_betaherpesvirus(25.0%)

transposase,integrase

attL 56618:56633|attR 111467:111482

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
56618:56633	attL	NA	NA	NA	NA
WP_032432471.1\|60503_61577_+\|transposase	IS481-like element ISKpn28 family transposase	NA	NA	NA	NA
WP_103214924.1\|61652_63027_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	4.7e-75	70.5
WP_103214923.1\|63169_63586_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA
WP_103214922.1\|63757_64894_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_023303133.1\|64906_65176_-	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_103214921.1\|65280_66579_-	MFS transporter	NA	NA	NA	NA
WP_103214920.1\|66812_67571_-	Tat pathway signal sequence	NA	NA	NA	NA
WP_103214919.1\|67624_68545_-	hypothetical protein	NA	NA	NA	NA
WP_103214918.1\|68608_68980_-	hypothetical protein	NA	NA	NA	NA
WP_103214917.1\|69120_69810_-	transmembrane anchor protein	NA	NA	NA	NA
WP_103214916.1\|69823_70561_-	HupE/UreJ family protein	NA	NA	NA	NA
WP_103214915.1\|70604_70970_-	hypothetical protein	NA	NA	NA	NA
WP_103214936.1\|71278_71575_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_103214914.1\|71579_72905_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_001568060.1\|73270_73645_-	hypothetical protein	NA	NA	NA	NA
WP_001568059.1\|73700_74027_-	hypothetical protein	NA	NA	NA	NA
WP_001568058.1\|74023_74752_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_020804497.1\|74748_75180_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_009310025.1\|75224_77282_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	2.6e-21	25.4
WP_009310026.1\|77351_77600_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_020804498.1\|77648_78191_-	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	4.6e-50	76.7
WP_071531256.1\|78428_78689_+	hypothetical protein	NA	NA	NA	NA
WP_001568049.1\|78882_79203_-	hypothetical protein	NA	NA	NA	NA
WP_074442803.1\|79238_79493_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	5.7e-11	49.3
WP_022644899.1\|79686_79878_-	hypothetical protein	NA	NA	NA	NA
WP_022644900.1\|79920_80427_-	antirestriction protein	G9FHQ1	Rhodococcus_virus	6.9e-08	31.9
WP_151114760.1\|80471_80900_-	antirestriction protein	NA	NA	NA	NA
WP_136046365.1\|81578_82346_-	hypothetical protein	NA	NA	NA	NA
WP_001568043.1\|82399_82819_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001568042.1\|82828_83050_-	hypothetical protein	NA	NA	NA	NA
WP_023280865.1\|83049_83751_-	DNA methylase	A0A2I7RE86	Vibrio_phage	2.7e-26	36.2
WP_009309993.1\|84187_84418_-	hypothetical protein	NA	NA	NA	NA
WP_049193275.1\|84478_85150_-	Mediator of plasmid stability	NA	NA	NA	NA
WP_001568038.1\|85152_86124_-	hypothetical protein	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_004152765.1\|86372_87857_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_072201151.1\|87856_88108_-	hypothetical protein	NA	NA	NA	NA
WP_009309980.1\|88262_88688_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.9e-31	50.4
WP_004206782.1\|88687_89959_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	8.6e-156	64.0
WP_004206783.1\|90037_90289_+	plasmid stabilization protein	NA	NA	NA	NA
WP_009309981.1\|90342_90648_+	hypothetical protein	NA	NA	NA	NA
WP_016240375.1\|90673_90931_+	hypothetical protein	NA	NA	NA	NA
WP_009309982.1\|92100_93072_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	9.2e-150	86.3
WP_000523812.1\|93071_94238_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	3.0e-224	97.7
WP_000200070.1\|94988_95999_+	replication initiation protein	J9Q7H0	Salmonella_phage	3.0e-87	54.3
WP_001515717.1\|96696_97437_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_000227969.1\|98392_99469_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_004187025.1\|100963_101212_+	plasmid stabilization protein	NA	NA	NA	NA
WP_151114766.1\|102300_102975_+	response regulator transcription factor	NA	NA	NA	NA
WP_032425576.1\|103011_103935_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	2.7e-167	93.5
WP_065800056.1\|104632_105556_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	5.6e-173	97.4
111467:111482	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP026368

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP026368_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026368_1

4200813-4200902

Orphan

Consensus_repeat	Method
TTTGTTGGCACTCTGTTGGCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026368_1

>merge|NZ_CP026368|1|4200813-4200902|CRISPRCasFinder
GTTTGTGGCACTTTGTTGGCACTCTGTTGGCACAACCTCACCGGTACGCAGCGTGGTTACTGGGTTTGCGTTGGCATTTTGTTGGCATTC

>NZ_CP026368|1|1|4200813-4200902|CRISPRCasFinder
GTTTGTGGCACTTTGTTGGCACTC	TGTTGGCACAACCTCACCGGTACGCAGCGTGGTTACTGGGTT
TGCGTTGGCATTTTGTTGGCATTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026368.1\|WP_039108801.1\|4205603_4206350_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP026368.1\|WP_112201805.1\|4198685_4198988_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP026368.1\|WP_112201808.1\|4202216_4202912_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP026368.1\|WP_112201804.1\|4198218_4198689_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026368.1\|WP_112201810.1\|4205302_4205587_+\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP026368.1\|WP_112201801.1\|4195849_4196245_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026368.1\|WP_040182097.1\|4201892_4202114_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|182039
NZ_CP026368.1\|WP_112201803.1\|4197970_4198222_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026368.1\|WP_032430153.1\|4195533_4195803_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026368.1\|WP_019704100.1\|4204040_4204235_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026368.1\|WP_004884232.1\|4194035_4194176_-\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP026368.1\|WP_112202002.1\|4194816_4195413_-\|DUF1367-family-protein	unknown	unknown	gnl\|CDD\|369209
NZ_CP026368.1\|WP_112201802.1\|4197241_4197469_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026368.1\|WP_142673920.1\|4202931_4203366_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026368.1\|WP_112202001.1\|4193346_4194036_-\|antiterminator	unknown	unknown	gnl\|CDD\|368843
NZ_CP026368.1\|WP_080922727.1\|4203725_4203941_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP026368.1\|WP_112201806.1\|4198987_4200418_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP026368.1\|WP_064344917.1\|4206346_4206970_+\|exonuclease	unknown	unknown	gnl\|CDD\|200235
NZ_CP026368.1\|WP_112201809.1\|4204323_4205295_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP026368.1\|WP_004141720.1\|4201532_4201853_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083

Protein	Function_ID	Function_description	E-value
NZ_CP026368.1\|WP_039108801.1\|4205603_4206350_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	2.05022e-39
NZ_CP026368.1\|WP_112202002.1\|4194816_4195413_-\|DUF1367-family-protein	gnl\|CDD\|369209	pfam07105, DUF1367, Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical phage proteins of around 200 residues in length. The function of this family is unknown. Some proteins are annotated as IrsA (intracellular response to stress).	6.0842e-80
NZ_CP026368.1\|WP_040182097.1\|4201892_4202114_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|182039	PRK09706, PRK09706, transcriptional repressor DicA; Reviewed.	1.05561e-10
NZ_CP026368.1\|WP_064344917.1\|4206346_4206970_+\|exonuclease	gnl\|CDD\|200235	TIGR03033, hypothetical_protein, putative phage-type endonuclease. Members of this protein family are found often in phage genomes and in prokaryotic genomes in uncharacterized regions that resemble integrated prophage regions.	1.81779e-22
NZ_CP026368.1\|WP_112202001.1\|4193346_4194036_-\|antiterminator	gnl\|CDD\|368843	pfam06323, Phage_antiter_Q, Phage antitermination protein Q. This family consists of several phage antitermination protein Q and related bacterial sequences. Phage 82 gene Q encodes a phage-specific positive regulator of late gene expression, thought, by analogy to the corresponding gene of phage lambda, to be a transcription antiterminator.	1.28418e-91
NZ_CP026368.1\|WP_112201805.1\|4198685_4198988_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	0.00273592
NZ_CP026368.1\|WP_112201806.1\|4198987_4200418_-\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	1.89033e-159
NZ_CP026368.1\|WP_112201808.1\|4202216_4202912_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	6.61047e-36
NZ_CP026368.1\|WP_112201809.1\|4204323_4205295_+\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	2.8136e-07
NZ_CP026368.1\|WP_004141720.1\|4201532_4201853_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	0.00392054

>NZ_CP026368.1|WP_112201806.1|4198987_4200418_-|AAA-family-ATPase
MTSDFMTPPHSIEAEQSVLGGLLLDDDSSERTQKVLSILKPESFYSRQHQVIFAEMRQMYRDHKPVDLLTLFEALESKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMAKDDYGYRGDWNSDLQKATGVMGALIETNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKTLAKELDCVVVLLTQLNRELEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEEKPTKRGGF
>NZ_CP026368.1|WP_112201805.1|4198685_4198988_-|MarR-family-transcriptional-regulator
MKKNSGKQAVINFIGQHPGCSFQDIRRGTGLDSSVVNSSLWQMHRDGQVKREGECRSYRYTLIDTTAVTESDLSVQYRQRPGGVNPMTNLFNQCLAGVRK
>NZ_CP026368.1|WP_112201804.1|4198218_4198689_-|hypothetical-protein
MTITLQAVNELIASLESAGELSIREQKFLKLAKEFRICSASLDTAIKTGNVLADQNAQLAAENVALKATSDDRRIFIMNGVQLGYIKVPTVETDPALETIRIAVSPQEKTPATDRIVAGIKADGVEEWVSSRGGRWNGTTEEALKFAKQLREGDDK
>NZ_CP026368.1|WP_112201803.1|4197970_4198222_-|hypothetical-protein
MSRHDFRRPIADHISNIRSELAKVPAEKRLHVIAEALYDMNPTGADEVLRASCGCYEWDISMDYRSADVRYADKNKQEVQHDN
>NZ_CP026368.1|WP_112201802.1|4197241_4197469_-|hypothetical-protein
MGVKKMICVSSTEPAWFTPGAVYDSEPRGADICICGDNLVSDLNKEDWYEMSQRADGLWFLIGFQQAFLFRGANQ
>NZ_CP026368.1|WP_112201801.1|4195849_4196245_-|hypothetical-protein
MENDNDNVITLVQPKRDEEKLLNITVTDRKGYRQQRCKHKAVEVDEKGRIILCLQCGCAVDPFQYVLQCATDGEAVVREIQQLHNRRDELREAVANLEREEKNAKARLRSARTSILFAENDLKNTEQGVKQ
>NZ_CP026368.1|WP_032430153.1|4195533_4195803_-|hypothetical-protein
MRMITRKKPAFTELYQTGVLTRIAAVKSPDGGGWRLFGLWRGKDIAVFVEAARGGIREWSGLDYLANFCASCGISLWEVHNKVAEKTPE
>NZ_CP026368.1|WP_112202002.1|4194816_4195413_-|DUF1367-family-protein
MAQTLQFEKSYQNVLIPAEPGTSEYLQLIPVGQLLCGEFRKPRNYAFHKKFFKLLTLGYHYWTPSGGLIEPAERTLISGFVDFLSSNLDQRAALQNAAEMYLSSVGISRSRDMALLKHFESFREWATIQAGFYDEYQMPDGSRRRVAKSISFASMDDSQFNGVYKSVLNVLWNYILRRKFHSPAEAENAASQLLSFAG
>NZ_CP026368.1|WP_004884232.1|4194035_4194176_-|YlcG-family-protein
MSRDVIERIRDRWQKLRLCRHRGTVLVDYRILRNFVRIYQTLGETA
>NZ_CP026368.1|WP_112202001.1|4193346_4194036_-|antiterminator
MNTQYLQYVRQQLIVATADLSGATKGQLVAFAENAQFTATARSRGRKKVADPVTGRMVNPSSPPIPGQQSRAKGSSIALVLPVEYSTASWRRALLSLEEHQKAWLLWNYSENIRWEHQETITRWALEQFNEKLAGVRIAKKTVDRLRQLIWLAAQDVKAELAGRETYEYQALAELVGVAKSTWTETYLPHWLALRSIFVKLDSNALISVTRSRSQQKATNLDVSLAKPN
>NZ_CP026368.1|WP_004141720.1|4201532_4201853_-|hypothetical-protein
MENAIARKLEPPILNPIEIEGILLNRLLSIGQKVFAEMRGVSESTISRRKSEGYYAEMAKEISALGLQVVPPEAVVVSRHYLQSVETLADIGLRAERCRPGPLGWD
>NZ_CP026368.1|WP_040182097.1|4201892_4202114_-|helix-turn-helix-domain-containing-protein
METLSDRVKKRRSELNLTQAGLAELSGTKQQTIQQVESGLTKRPRKLIELATALQCEPRWLLFGEQGNKTNAA
>NZ_CP026368.1|WP_112201808.1|4202216_4202912_+|helix-turn-helix-transcriptional-regulator
MNIADRVKLRRAELSLTQAELASLAKTSQQAIQQLEDGRTKRPRYLPELAAALKCSVSWLLTGEHEMTSEIPPEKEWSKVDSWDKNTPLSEGEVEVPFLKDIEFACGDGRIQSDDHNGFKLRFSKATLRRVGANSDGSGVICFPATGDSMEPVIPDGTTVAVDTNNKRIIDGKLYAIAQPGAGDEKLKRIKQLYRKPGGILVIRSFNREDEEAMEQDVEIIGRVFWYSVLL
>NZ_CP026368.1|WP_142673920.1|4202931_4203366_+|hypothetical-protein
MSFFYFLLGAFLAVTCCLFVFIWHKKQSTKKNLKQYQPVSIGSSVKNAKTLLNAADHSYAVDNNALAAVWKSRGCKEHAEREGRIYTIKGSWAIKKKLIKPGVDGFLNDIPLPRDCGCYMTYIYNLRSLPPSMLTPSAIKSLQK
>NZ_CP026368.1|WP_080922727.1|4203725_4203941_+|hypothetical-protein
MSKENNGGPAYPTQGYEGLTVRDYFAAKAMQGWLASYPESNQHPVATHHENMVAELSYLMADAMLKAREEV
>NZ_CP026368.1|WP_019704100.1|4204040_4204235_+|hypothetical-protein
MANSIPNSGRAVMMRNAKTGATWKVSRDYLKETFWFEPQGNLRHIRKAFEARDLLPNLVPAGTH
>NZ_CP026368.1|WP_112201809.1|4204323_4205295_+|hypothetical-protein
MSEIMDLTVIEIKPEQAPTLYRAGGLDAYLEQIRQAVNEVPDLTTKKGRDRVASLAAQVSRSKTAIEKPGREYLKRLKEALRPAEAEIKRFVDACDELRDATRKPLTEWEAEQERIKAEEAMNVLHAEALAMNEEFDRQLAARIESDHEMALLMNDAFDREQADKAAEAERQRIAHEEEIKRMAAAAASREVEQRAQREREEAALREAALKAQAEQAERDRIAAEQKAEADKKAAVEAERRKAQEEADRIRREAEQREQARLAEEKRKADEQARREADVKHRKAVGAEIVKALLANTSLTRDQAIEVLTAVKDGRIPHTGISY
>NZ_CP026368.1|WP_112201810.1|4205302_4205587_+|host-nuclease-inhibitor-GamL
MNAYRAYDVIEEHKWAEQTLTEEKQKWIDDRAQEIIDALPKEPSGLFRFSVPMEKSPYEGLRSDAAGEAYNDLISAVAYAQAEYDWDHRTGCPF
>NZ_CP026368.1|WP_039108801.1|4205603_4206350_+|phage-recombination-protein-Bet
MSTALSTMAGKLASRLGMDAGTDLMNTLKNTAFKGGNVTDEQFTALLIVANQYGLNPWTKEIYAFPDKGGIVPVVGVDGWARIINEHPQFDGMEFAYDKEEGACTCKIYRKDRTHPTIVTEYMGECKRNTQPWQSHPTRMLRHKTLIQCARLAFGFAGIFDQDEAERVIEGSATEVHVGHESDGRRPELIAKGESAARLGTVKYQEFWVALSAEEKQVIGAVEKRRMYDMSLAVDNAEPVDAAAPEDK
>NZ_CP026368.1|WP_064344917.1|4206346_4206970_+|exonuclease
MMEQRTPEWFAARCGKVTASRLADVMARTKSGYAASRQNYMAELICQRLTGKLEEGFSNAAMIRGTELEPVAREMYALNEFDAEITEVGLIDHPTIPGFAASPDGLVNGDGLIEIKCPNTWTHLETLKTGEPKRQYLLQMHAQMMCTGRKWCDFVSFDDRLPPDLAYFKKRIHFDEALANEIESEVKKFLEELEKEISSIKNHDHAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP026368_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026368_2

4438891-4438982

Orphan

Consensus_repeat	Method
GCCAGCGCGCCACGCGCGCTCGGGTGGACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026368_2

>merge|NZ_CP026368|2|4438891-4438982|CRISPRCasFinder
GCCAGCGCGCCACGCGCGCTCGGGTGGACCGGGGGCCGAGGGTGCCGTGATCGGCAACATTGCCAGCGCGCCACGCGCGCGCGGGTGGACCG

>NZ_CP026368|2|2|4438891-4438982|CRISPRCasFinder
GCCAGCGCGCCACGCGCGCTCGGGTGGACCG	GGGGCCGAGGGTGCCGTGATCGGCAACATT
GCCAGCGCGCCACGCGCGCGCGGGTGGACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026368.1\|WP_023288551.1\|4429146_4429965_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP026368.1\|WP_112201851.1\|4433708_4436234_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|374266
NZ_CP026368.1\|WP_112201854.1\|4448886_4450140_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP026368.1\|WP_002890106.1\|4428335_4429145_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270407
NZ_CP026368.1\|WP_064158649.1\|4439093_4439936_+\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226164
NZ_CP026368.1\|WP_032426068.1\|4445819_4446386_+\|lipoprotein-nlpC	unknown	unknown	gnl\|CDD\|236773
NZ_CP026368.1\|WP_032428601.1\|4439958_4440897_+\|phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|132472
NZ_CP026368.1\|WP_023288537.1\|4446430_4447483_-\|phosphoporin-PhoE	unknown	unknown	gnl\|CDD\|182275
NZ_CP026368.1\|WP_044521199.1\|4432075_4433719_-\|fimbrial-adhesin-EcpD	unknown	unknown	unknown
NZ_CP026368.1\|WP_044521203.1\|4431396_4432107_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP026368.1\|WP_032453208.1\|4440963_4441836_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP026368.1\|WP_087672193.1\|4429970_4430714_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP026368.1\|WP_023288545.1\|4436986_4437574_-\|common-pilus-major-fimbrillin-subunit-EcpA	unknown	unknown	gnl\|CDD\|374549
NZ_CP026368.1\|WP_023288544.1\|4437647_4438190_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
NZ_CP026368.1\|WP_112201850.1\|4430703_4431393_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP026368.1\|WP_086076573.1\|4441832_4442717_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP026368.1\|WP_048296805.1\|4436259_4436928_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376075
NZ_CP026368.1\|WP_008805306.1\|4447772_4448876_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP026368.1\|WP_072413931.1\|4443777_4444443_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP026368.1\|WP_112201853.1\|4444538_4445408_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|183067

Protein	Function_ID	Function_description	E-value
NZ_CP026368.1\|WP_023288551.1\|4429146_4429965_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.28367e-138
NZ_CP026368.1\|WP_112201851.1\|4433708_4436234_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|374266	pfam15976, CooC_C, CS1-pili formation C-terminal. CooC_C is a highly conserved C-terminal domain on fimbrial outer membrane usher proteins like TcfC. The protein is required for CS1 pilus formation.	2.00351e-32
NZ_CP026368.1\|WP_112201854.1\|4448886_4450140_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP026368.1\|WP_002890106.1\|4428335_4429145_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270407	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.59154e-109
NZ_CP026368.1\|WP_064158649.1\|4439093_4439936_+\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226164	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.73973e-118
NZ_CP026368.1\|WP_032426068.1\|4445819_4446386_+\|lipoprotein-nlpC	gnl\|CDD\|236773	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase.	3.40953e-39
NZ_CP026368.1\|WP_032428601.1\|4439958_4440897_+\|phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|132472	TIGR03431, PhnD, phosphonate ABC transporter, periplasmic phosphonate binding protein. This model is a subset of the broader subfamily of phosphate/phosphonate binding protein ABC transporter components, TIGR01098. In this model all members of the seed have support from genomic context for association with pathways for the metabolims of phosphonates, particularly the C-P lyase system, GenProp0232. This model includes the characterized phnD gene from E. coli. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.	1.97805e-101
NZ_CP026368.1\|WP_023288537.1\|4446430_4447483_-\|phosphoporin-PhoE	gnl\|CDD\|182275	PRK10159, PRK10159, phosphoporin PhoE.	0
NZ_CP026368.1\|WP_044521203.1\|4431396_4432107_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	0.00297027
NZ_CP026368.1\|WP_032453208.1\|4440963_4441836_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.39607e-90
NZ_CP026368.1\|WP_087672193.1\|4429970_4430714_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.08074e-52
NZ_CP026368.1\|WP_023288545.1\|4436986_4437574_-\|common-pilus-major-fimbrillin-subunit-EcpA	gnl\|CDD\|374549	pfam16449, MatB, Fimbrillin MatB. This is a family of fimbrial proteins.	6.52261e-81
NZ_CP026368.1\|WP_023288544.1\|4437647_4438190_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	1.5725e-09
NZ_CP026368.1\|WP_112201850.1\|4430703_4431393_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.33052e-44
NZ_CP026368.1\|WP_086076573.1\|4441832_4442717_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	2.52031e-86
NZ_CP026368.1\|WP_048296805.1\|4436259_4436928_-\|hypothetical-protein	gnl\|CDD\|376075	pfam18649, EcpB_C, EcpB C-terminal domain. This is an immunoglobulin like domain found at the C-terminal region of EcpB. It is a periplasmic chaperone which along with EcpE help assemble the E. coli common pilus (ECP) EcpA and EcpD subunits. The C-terminal domain is predicted to contain residues that might be involved in binding a C-terminal carboxylate anchor.	8.40103e-43
NZ_CP026368.1\|WP_008805306.1\|4447772_4448876_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NZ_CP026368.1\|WP_072413931.1\|4443777_4444443_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.09988e-67
NZ_CP026368.1\|WP_112201853.1\|4444538_4445408_-\|DMT-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	2.47841e-09

>NZ_CP026368.1|WP_023288544.1|4437647_4438190_-|LuxR-family-transcriptional-regulator
MEYKSCSDKYIWSAHDSYFYKGLSELIVDIDELIYLSLEKIRRDFVFINLNTASLNEFIRRDSEWLSAVKGKQVVLIAARKSEALANYWYYNSDIRGVVYVGLSRDIRKELAYVINGRFLRKDIKKDKITDREMKIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ
>NZ_CP026368.1|WP_023288545.1|4436986_4437574_-|common-pilus-major-fimbrillin-subunit-EcpA
MKKKVLAIALVTAFTGMGVAQAADVTAQAVATWSATAKKDTTSKLVVTPLGSLAFQYAEGVKGFNSQKGLFDVAIEGDATATAFKLTSRLITNTLTQLDTSGSTLSVGVDYNGAAVEKTGDTVMIDTANNILGGNLSALANGYNASGRTTAQDGFTFSIISGTTDGTTAVTDYSTLPEGIWSGDVSVQFDATWTS
>NZ_CP026368.1|WP_048296805.1|4436259_4436928_-|hypothetical-protein
MKKHLLALGLLLAGVSPAQALDVGDISSFMNSGSSTLSKTIKNSTDSGRLINIHLERLSSPLDDGQVIPMDKPDEVLLTPASLLLPAQASDVIRFFYKGPADDKERYYRIVWFDQALSDAQRDNATRSAVATASARIGTILVVAPRQVNYRFQYANGSLTNTGNATLRILAYGPCLKTAEGKECKENYYLMPGKSRRFTRVDTADKKGRVALWQGEQFVPVK
>NZ_CP026368.1|WP_112201851.1|4433708_4436234_-|fimbrial-biogenesis-outer-membrane-usher-protein
MPLQRISPGLKTRLAFGMFFLFVQPDASAAAPGAQQIGGVIIPQAFSQALQDGMSVPLFIHLAGSQDTRDDQRIGSAFIWLDGGQLRVRQIRLEDNEGNASVSEQTRQQLTGLANAPFSEALTITLTDSAQLDLSLRQLLLQLVVKREALGTVLRSRSEDIGQSSVNALSSNLSYNLGVYNNQMRNGGSNTSSYLSLNNVTALREHHVVLDGSLYGIGSGQQDSELYKAMYERDFAGHRFAGGMLDTWNLQSLGPMAAISAGKIYGLSWGNQASSTVFDNSQSATPVIAFLPAAGEVHLTRDGRLLSVQNFAMGNHEVDTRGLPYGIYDVEVEVIVNGRVVSKRTQRVNKLFSRGRGAGAPLAWQVWGGSFHMDRWSESGKKTRPAKESWLAGLSASGSLSTLSWAATGYGYDNQAVGETRLTLPLGESINVNLQNMLASDSSWSSVGSISATLPGGFSSVWVNQERTRIGDQLRRSDADNRAIGGTLNLNALWSKLGTFSVSYNDDRRYNSHYYTADYYQTVYSGAFGSLGLRAGIQRYNNGDSSANTGKYIALDLSLPLGNWFSAGMTHQNGYTMANLSARKQFDEGTIRTIGANLSRAISGDTGDDKTLSGGAYAQFDARYASGTLNVNSAADGYVNTNLTASGSVGWQGKNIAASGRTDGNAGVIFNTGLEDDGQISARVNGRIFPLSGKRNYLPLSPYGRYEVELQNSKNSLDSYDIVSGRKSHLTLYPGNVAVIEPEVKQMVTVSGRIRAEDGTLLANARINNHIGRTRTDENGEFVMDVDKKYPTIDFSYGGNKTCEVALELSQARGAVWVGDVVCSGLSSWAAAQQTGEENES
>NZ_CP026368.1|WP_044521199.1|4432075_4433719_-|fimbrial-adhesin-EcpD
MKVNPLIALAILALLWPAAALRAAVSKTTWSDAPAREFVFVENNSDDNFFVTPGGALDPRMTGANRWTGLKYTGSGTIYQQSLGYIDNGYNTGLNANWKFDMWLENSPVSHPLTGLRCINWYAGCDMATSLILPQTTDASGFYGATVTSGGAKWMHGMMSDAFYQYLQQMPVGGSFTMTINACQTSVNYDASSGARCKDQASGNWYVRNVTHTKAASLRLINTHSLAEVFINSDGVPTLGEGNADCRTQTIGSRSGLSCKMVNYTLQTNGLSNTSIHIFPAIANSSLASAVGAYDMQFSLNGSSWKPVSNTAYYYTFNEMKSSDAIYVFFSSNFFKQMVNLGISDINTKDLFNFRFQNTTSPESGWYEFSTSNTLIIKPRDFSISIISDEYTSAPSREGYVGSGEPALDFGYIVTTSGKTAADEVLIKVTGPAQVIGGRSYCLFSSDDGTAKVPFPATLSFITRSGATQTYDAGCDDSWRDMTDALWLTTPWTDISGEVGQMDKTTVKFSIPMDNAISLRTVDDNGWFGEVSASGEIHVQATWRNIN
>NZ_CP026368.1|WP_044521203.1|4431396_4432107_-|fimbria/pilus-periplasmic-chaperone
MSRRRGATLTKALLTVGCLLVAPLAQAISVGNLTFSLPAEADFASKRVVNNNKSARLYRIAVSAIDRPGGSEVRSRPVDGELLFAPRQLALQAGESEYFKFYYHGPRDNRERYYRVSFREIPTRNLTRRGPTGGEVSMEPVVVMDTILVVRPREVQFKWSFDKVAGTVSNTGNTWFKLLIKPGCDSTEEEGDAWYLRPGDVVRQPALRQPGNHYLVYNDKFIKISDTCPLKPRPAE
>NZ_CP026368.1|WP_112201850.1|4430703_4431393_+|amino-acid-ABC-transporter-permease
MNANLAVIADNLDYLLWGRLAEGQPGGVALTLLMAIGATLLALPGGIALAGLAWRCGGLTRRLLFLWAEIIRGIPLIFVIFWLWYLLPMLTGGDLPGAVTVTLALAWFTAASVMHSVLAGLQSLPKGQYEAALTQGFAPGQTLRLVLLPQALRNVQPSLVGIFIGLLKDTSLAFIVNVPELTTVAGQVNNRVQIYPLAIFVFTGAVYYLLCCGLSLLTSRRFTRRATAG
>NZ_CP026368.1|WP_087672193.1|4429970_4430714_+|amino-acid-ABC-transporter-permease
MLDWHGVLSGQPLQWIISGFLTTVWVSVAGILLATLLAVLLLALRLGGGRAGRGLVAAWVSLFRNTPLLVQLLFWYFAAWNLLPLAVKNVVNDEHAWSILPGNVWWLTPEFLCSMWGLGVFTSAFLVEEIASGLRAVSHGQREAALSQGFTPWQELRFILLPQGLANAWQPIVGQYLNLMKLSSLASGIGFAELTYQVRQIESYNAHALEAFAVGTALYLALGVAMGVALTRLGPGRKLQRSAQHER
>NZ_CP026368.1|WP_023288551.1|4429146_4429965_+|amino-acid-ABC-transporter-ATP-binding-protein
MFSGLFSHSAAPAADFSRLQRASITFREVAKRYGDHQVLNAINLQVDPGEVVAILGPSGSGKSTLIRLINQLESLSGGEILIDGKPTSRLSGSALRQLRSRVGFVFQQFNLYAHLTAQENITLALERVHGWGKSAAQERALALLRQVGLEEKAQQMPAQLSGGQQQRVAIARALASSPQIILFDEPTSALDPEMIGEVLQVMKNLAHSGITMLVVTHEMQFAREIADRVVFIDGGDILEVAPPAEFFAHPQHARARRFLQKVLDPLHQESLE
>NZ_CP026368.1|WP_002890106.1|4428335_4429145_+|ABC-transporter-substrate-binding-protein
MRNKTTKIALALGMLLLASQAQADQLADIKAAGVVKVATFDANPPFGSVDAKTHHIVGYDVDFAQALAKALGVKLELVATNPANRIPLLQSGKADLIVADITITPERAQVIDFSTPYFVTGQQFLVPAGSPDKLDEYSKARIGAVKGTTGEQALHQRFPQARVLSYDDIPLALTALRNGNVQAITQDSTILAGLLAEAPDKAKFKILPDLLSKEEIGVGVKKGEPALLKAVNDELVKLEKTGEAAKIYDVWFGPATKTPQPRAFTIEAK
>NZ_CP026368.1|WP_064158649.1|4439093_4439936_+|phosphonate-ABC-transporter-ATP-binding-protein
MNSSLAAVAETDFQPFTDLNAGRQRKVLSVRNLSKAYEAQHKVLDSISFDLHAGEMVGVIGRSGAGKSTLLHVLNGTHSASGGEILSYPEVGTPHDVSRLKGRALNAWRSHCGMIFQDFCLVPRLDVLTNVLLGRLSQTSTLKSLFKIFPAADRARAIALLEWMNMLPHALQRAENLSGGQMQRVAICRALMQNPGILLADEPVASLDPKNTQRIMDVLREISEQGISVMVNLHSVELVRTYCTRVIGVANGQLIFDDHPSRLTQDVLQQLYGDDVSQLH
>NZ_CP026368.1|WP_032428601.1|4439958_4440897_+|phosphonate-ABC-transporter-substrate-binding-protein
MKKYMTGAVRLSAMVAGMMMAWQAAAAQPKELNLGILGGQNATQQIGDNQCVKTFLDKELNVDTKLRNSSDYSGVIQGLLGGKVDVVLSMSPSSYASVYLNNPKAVDIVGIAVDDKDQSRGYHSVVIVKADSPYKTLDDLKGKAFGFADPDSTSGYLIPNHAFKEKFGGNADNKYNNTFSSVTFSGGHEQDILGVLNGQFAGAVTWASMVGDYNTGYTTGAFNRLIRMDHPDLMKQIRIIWQSPLIPNGPILVSNALPADFKAKVVAAVKKLDTEDHACFIKAMGGTQHIGPGSVADFQQIIDMKRELVSAR
>NZ_CP026368.1|WP_032453208.1|4440963_4441836_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MKTTHIEFERYYQQIRSRQKRDAVCWSLLLLALYFAAGSAAEFNLLTIWHSLPHFLDYMAETIPPLSAGNLFADVQTKGSLAWWGYRLPIQLPLIWETLQLALASTLVAVAIATVFAFLAANNAWSPAPVRFAIRVLVAFLRTMPELAWAVIFVMAFGIGAIPGFLALMLHTVGSLTKLFYEAVESAQNKPVRGLAACGASPLQKIRFALWPQVKPLFLSYGFMRLEINFRSSTILGLVGAGGIGQELMTNIKLDRYDQVSITLLLIILVVSALDMLSGRLRLWVLEGKK
>NZ_CP026368.1|WP_086076573.1|4441832_4442717_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MSVWHMQPDIAASRRQHKQLYQVQGRYLRYVGLVALACVLYYVWFFLQFGISGEQLTTGLQQIGRYLARMFVWHDFWNWPFGYYFTQIGITLAIVFAGTLTATVLALLLSFFAARNIMRGMVLGTLALLMRRLFDVLRGIDMAIWGLIFVRAVGLGPLAGVLAIIMQDTGLLGRLYAEGHEAVDRSPGRGLTAVGANGLQKHRFGIFTQSFPTFLALSLYQIESNTRSAAVLGFVGAGGIGLIYAENMRLWNWDVVMFITLLLVAVVMIMDTLSAWLRRRYIGGAVVPLYQEER
>NZ_CP026368.1|WP_072413931.1|4443777_4444443_-|HAD-IB-family-hydrolase
MGNTLTIFDLDNTLIQGDSSTIWSQFMVREGLATQKGYLAREARLMADYDRGEMNIADYVALIQAPLAGIPKSDVDALVARCVREAILPRVYPQAWELIRRLRAEGEQMLIISASVSLLVQAVAAALEIEQALGIDVAMVDGGYSGEIAGIPSYQQGKVARLAQWREAHPQYDGEVTFYTDSINDLPLCLHADRVRLVNPCPQLQAAGAGYGWPVLSWLLE
>NZ_CP026368.1|WP_112201853.1|4444538_4445408_-|DMT-family-transporter
MHVRYSLLASQATTATFVLLWGSAAIFTRWGLDNASPMALLVFRFLVALAALAPLAIARRRWLPAPGTRLQTAATGLMLIGGYSVCYFEAMANGVTPGLIATIMGIQPILTLCVVERRLQGRRLLGLLIALAGLVLLVWRSLVASPMAMTGILFALAALLLMTFGALWQKRSRQSPADVLPLQYAVSLGLCLLIAPVSGFRFTVNAGLIIPVLFLGLLISVVAQLLLYHLLSAGNIVNVTSLFYLVPAITALLDYLLLGNRLPAAAMVGMVAIVGGIVLVFRTGKVRAG
>NZ_CP026368.1|WP_032426068.1|4445819_4446386_+|lipoprotein-nlpC
MKPKLKHALLLIPFLLLAGCSSSPKQAKHTKSHADMTIDGGSDDLIPVVAALHDQMHTWQGTPYEWGGTEQSGVDCSGFVWRTLKDRFNLPMERITTRELLHMGVRVDKRDLRPGDLVFFRTRAGMHVGFYDTDHNFLHASSSQGVMRSSLDNPYWESAFYQARRLPKEYNAQITMNSDTLHLAKNRR
>NZ_CP026368.1|WP_023288537.1|4446430_4447483_-|phosphoporin-PhoE
MKKSTLALMMMGFVASTATQAAEVYNKNANKLDVYGKIKAMHYFSDYDSKDGDQTYVRFGIKGETQINEDLTGYGRWESEFSGNKTESDSSQKTRLAFAGLKLKNYGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGLVDGLDMTLQYQGKNEGREAKKQNGDGVGTSLSYDFGGSDFAVSAAYTSSDRTNDQNLLARGQGSKAEAWATGLKYDANNIYLATMYSETRKMTPISGGFANKAQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGVGSEDLVNYIDVGLTYYFNKNMNAFVDYKINQLKSDNKLGINDDDIVALGMTYQF
>NZ_CP026368.1|WP_008805306.1|4447772_4448876_+|glutamate-5-kinase
MSESQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAMGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNSIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQPGLFTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMGTKLQAADVACRAGIDTIIAAGNRPDVIGHAMEGLPVGTCFHAQESPLENRKRWIFGAPPAGELTVDAGATQAILERGSSLLPKGIKIVSGNFSRGEVIRIRNSEGRDIAHGVSRYNSDALRLIAGQHSQQIDAILGYEYGPVAVHRDDMIIR
>NZ_CP026368.1|WP_112201854.1|4448886_4450140_+|glutamate-5-semialdehyde-dehydrogenase
MLEQMGIAAKAASWQLALLSSREKNQVLEKIADYLEAQTDDILRANAEDLAEARANGLSEAMLDRLALTPARLSGIACDVRQVCNLADPVGQVIDGGLLDSGLRIERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAAILRGGKETWRTNAATVKVIQQALQECGLPSAAVQAIESPDRALVGEMLKMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIFVDETAEIAPALKIIVNAKTQRPSTCNTVETLLVHRNIADTFLPALSKQMAESGVTLHAAPSALPALQNGPAKVEPVKAEQYDDEYLSLDLNVKVVADMDEAIAHIREHGTQHSDAILTRTLRNANRFINEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGFGDDTIRA

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Crispr_ID: NZ_CP026368_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026368_3

4839290-4839430

Orphan

Consensus_repeat	Method
CCGCGACGTTCGGTAGCCCGGCTAAGCGTAGCGCAAGCCGGGGGATGTCCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026368_3

>merge|NZ_CP026368|3|4839290-4839430|CRISPRCasFinder
CCGCGACGTTCGGTAGCCCGGCTAAGCGTAGCGCAAGCCGGGGGATGTCCCGGTGACGGCGCTCCGCGCCTTACCCGGGCTACACAACCCGCGACGTTCGGTAGCCAGGCTAAGCGTAGCGCAAGCCGGGGGATGTCCCGG

>NZ_CP026368|3|3|4839290-4839430|CRISPRCasFinder
CCGCGACGTTCGGTAGCCCGGCTAAGCGTAGCGCAAGCCGGGGGATGTCCCGG	TGACGGCGCTCCGCGCCTTACCCGGGCTACACAAC
CCGCGACGTTCGGTAGCCAGGCTAAGCGTAGCGCAAGCCGGGGGATGTCCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026368.1\|WP_023291858.1\|4836380_4837820_-\|D-aminoacylase	unknown	unknown	gnl\|CDD\|238622
NZ_CP026368.1\|WP_032455020.1\|4847969_4848233_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|379229
NZ_CP026368.1\|WP_048296610.1\|4830608_4831439_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP026368.1\|WP_101866262.1\|4840476_4842078_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP026368.1\|WP_101995888.1\|4839448_4840465_-\|Ldh-family-oxidoreductase	unknown	unknown	gnl\|CDD\|376860
NZ_CP026368.1\|WP_112201891.1\|4827743_4830509_-\|sigma-54-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226443
NZ_CP026368.1\|WP_004204205.1\|4835977_4836370_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100004
NZ_CP026368.1\|WP_112201895.1\|4842093_4843698_-\|aldehyde-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|143447
NZ_CP026368.1\|WP_112201896.1\|4846863_4847973_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP026368.1\|WP_032429092.1\|4832075_4832939_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP026368.1\|WP_112201894.1\|4838020_4839241_+\|amino-acid-deaminase	unknown	unknown	gnl\|CDD\|143492
NZ_CP026368.1\|WP_032454780.1\|4831471_4832005_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP026368.1\|WP_112201892.1\|4832935_4833535_-\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	unknown	unknown	gnl\|CDD\|181670
NZ_CP026368.1\|WP_004204197.1\|4843712_4844633_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP026368.1\|WP_004886423.1\|4834390_4835875_-\|sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271357
NZ_CP026368.1\|WP_044525286.1\|4845919_4846867_+\|4-hydroxyproline-epimerase	unknown	unknown	gnl\|CDD\|172473
NZ_CP026368.1\|WP_032455015.1\|4844784_4845609_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP026368.1\|WP_112201897.1\|4848213_4849476_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223523
NZ_CP026368.1\|WP_112201893.1\|4833521_4834394_-\|2-dehydro-3-deoxygalactonokinase	unknown	unknown	gnl\|CDD\|377446
NZ_CP026368.1\|WP_002887503.1\|4849479_4849920_-\|homoprotocatechuate-degradation-operon-regulator-HpaR	unknown	unknown	gnl\|CDD\|188209

Protein	Function_ID	Function_description	E-value
NZ_CP026368.1\|WP_023291858.1\|4836380_4837820_-\|D-aminoacylase	gnl\|CDD\|238622	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.	2.20892e-153
NZ_CP026368.1\|WP_032455020.1\|4847969_4848233_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|379229	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain. The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This cluster appears within sarcosine oxidase proteins.	4.21552e-21
NZ_CP026368.1\|WP_048296610.1\|4830608_4831439_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.05026e-15
NZ_CP026368.1\|WP_101866262.1\|4840476_4842078_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.95512e-48
NZ_CP026368.1\|WP_101995888.1\|4839448_4840465_-\|Ldh-family-oxidoreductase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	3.01448e-122
NZ_CP026368.1\|WP_112201891.1\|4827743_4830509_-\|sigma-54-dependent-transcriptional-regulator	gnl\|CDD\|226443	COG3933, COG3933, Transcriptional antiterminator [Transcription].	6.03344e-152
NZ_CP026368.1\|WP_004204205.1\|4835977_4836370_-\|RidA-family-protein	gnl\|CDD\|100004	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	9.9047e-31
NZ_CP026368.1\|WP_112201895.1\|4842093_4843698_-\|aldehyde-dehydrogenase-(NADP(+))	gnl\|CDD\|143447	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.	0
NZ_CP026368.1\|WP_112201896.1\|4846863_4847973_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	3.24709e-48
NZ_CP026368.1\|WP_032429092.1\|4832075_4832939_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.08988e-73
NZ_CP026368.1\|WP_112201894.1\|4838020_4839241_+\|amino-acid-deaminase	gnl\|CDD\|143492	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties of cryptic DSDs are still poorly understood. Typically, DSDs catalyze the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia.	0
NZ_CP026368.1\|WP_032454780.1\|4831471_4832005_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.63261e-14
NZ_CP026368.1\|WP_112201892.1\|4832935_4833535_-\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	gnl\|CDD\|181670	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed.	4.23644e-108
NZ_CP026368.1\|WP_004204197.1\|4843712_4844633_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	9.48902e-100
NZ_CP026368.1\|WP_004886423.1\|4834390_4835875_-\|sodium:solute-symporter-family-protein	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	2.45312e-87
NZ_CP026368.1\|WP_044525286.1\|4845919_4846867_+\|4-hydroxyproline-epimerase	gnl\|CDD\|172473	PRK13970, PRK13970, 4-hydroxyproline epimerase.	3.37281e-152
NZ_CP026368.1\|WP_032455015.1\|4844784_4845609_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.02124e-26
NZ_CP026368.1\|WP_112201897.1\|4848213_4849476_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223523	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].	1.28099e-22
NZ_CP026368.1\|WP_112201893.1\|4833521_4834394_-\|2-dehydro-3-deoxygalactonokinase	gnl\|CDD\|377446	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase. 2-keto-3-deoxy-galactonokinase EC:2.7.1.58 catalyzes the second step in D-galactonate degradation.	3.58295e-114
NZ_CP026368.1\|WP_002887503.1\|4849479_4849920_-\|homoprotocatechuate-degradation-operon-regulator-HpaR	gnl\|CDD\|188209	TIGR02337, Homoprotocatechuate_degradative_operon_repressor., homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.	4.17885e-59

>NZ_CP026368.1|WP_112201894.1|4838020_4839241_+|amino-acid-deaminase
MKYHSAPLIPHKSALMSAPANLLAEEVCLPAALLKKSALENNISWMQRYADARGVSLAPHGKTTMTPWIFQAQQRAGAWGIGVGSAWQASAAMASGIQRVLMVNQLVGKANMQVVAQLKAHYRAVDFICCVDSETNVRALSAFFAAQGQTLDVLIELGVRGGRCGCRSVDDALALAQRVSDLPGLRLRGLELYEGVLHGDDPQPQVEALLQQAAALACRMEPLVDGEFILTGAGTVWYDVVCNIWLAAAKPRRCRIVIRPGCYITHDRGIYDLAQQALIARDPIACDLAGDLTSALELMAMVQSVPEADRAVVNFGKRDCAFDAGLPQPIAHYRNGQQLALRAESIVSIGIMDQHCMLRLAPGSDVQVGDILLFGTSHPCLTFDKWKTLLLVDDDYNVLDELDTLF
>NZ_CP026368.1|WP_023291858.1|4836380_4837820_-|D-aminoacylase
MKVDWLFKNVTVIDGSGGPQYRADVAVKGDRIMAIAPALDVAAEQEIDGQGRVLAPGFIDVHTHDDINVIRMPEYLPKLSQGVTTVIVGNCGISAATATMRGEVPDPMNLLGERQHFIYPTVEAYAHAVEAARPSLNVGTLIGHTALRNNHMDDLFRPASETEIAGMRIQLRDALRQGALGLSTGLAYASAFQSTTEEVMALAEELTAEGGIYTTHLRSEFEPILEALDEAFRIGRHGNVPVVVSHHKCAGAKNWGRTKETLAFFDEMRQRQEIACDCYPYSASSSTLDMKQVTDEFDIVITWSEAQPEQAGKTLQQIADEWQVSLHDAAARLMPAGAIYYNMDEQDVRRVLGYPVTMIGSDGLPNDPMPHPRLWGAFPRVLGHYCRDERLFPLTTAIHKMTGLSSARFQLADRGLVKVGYYADLVLFDPLTVRDVASFSDPKRPADGIEAVMVNGVMSYGSDKKIIGRAGRFLRRRMN
>NZ_CP026368.1|WP_004204205.1|4835977_4836370_-|RidA-family-protein
MSIKRYGVEGGTGTGGQHLPFARAVEAGGWLYVSGQTPMKDGEVVEGGIVDQSRLAIQNCVDIMTEAGYTLADVVHVKVILTDARYFQSFNKVFREFFGDNPPARICCVADLVVDCKVEVDVTCYNASRA
>NZ_CP026368.1|WP_004886423.1|4834390_4835875_-|sodium:solute-symporter-family-protein
MNSHVFLVGFIIYALAMIWLGWYVSRHQKSGEDFLLGGRSLPLFLTLGSTVATMVGTGSSMGAVGFGYSNGWAGMLYGVGGAIGILLVAWLFAPVRKLRFMTMSEELSYYTGGSHLIKNLVGIMIFIASIGWLGAHILGGSMYLAWATGINLTVAKIIIAMAFAIYVIIGGYSAVVWTDTIQALILFFGFILMAILAVVHVGGWDAIVQAMDPKAMSLFAVDKLGTIPALSLAMVIGVGVLATPSYRQRIYSGKDVSSVRRSFVYTGVLYLFFSVLPAIIGMAAWTMNPNLENSNYAFLFATSFLPAILGLVVLIAGLSATMSSASSDAIAAVAIMMRDVYTLVTGKMPPAHKAITLSRWMLAFVIGLAMIFALTSNDIISYITKMISMLMSGLFVCSILGRFWLRFNWQGALTALLSGMLVSIVVLVKADWLAYWGNPCIPSVVGSFVSAIFVTVMTPASKISRQQALEMITQEREGEAIPAKTAVQVSGEAQ
>NZ_CP026368.1|WP_112201893.1|4833521_4834394_-|2-dehydro-3-deoxygalactonokinase
MKDYIAVDWGSTQLRGWLIRNGQCVETKQLPLGITRLNGRSPADVFAEHLAPWRGSQALPVLMAGMIGSDAGWQAVPYLDCPAAIDAPGRQLCAVAEGVWIIPGLKIEQDRDFNVMRGEETQLLGACQLAPAECYVLPGTHCKWVQVAGGEVRHFATAMTGELHHLLMTQSLIGKGLPAQQPDEAAFERGLEKGLAQPSLISELFVARAARVLGGLAASSVSDYLSGLLIGAEVATLGQRFRASAVTLVGDPALNARYGRAMKARGMTVNSCSGDEALLAGMARIMHEQD
>NZ_CP026368.1|WP_112201892.1|4832935_4833535_-|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase
MNKIKLVAILRGIQPAEAADHIETLINAGFRYIEIPLNSPDWQQSIPQMVARFGEQAMIGAGTVLRVEQVDFLAEAGARLIVTPNTQPAVIRQAVAHGMQVCAGCATATEAFNALDAGAQWLKIFPSSAFGPDYIRALKAVLPSEVPVLAVGGVTPENLATWMRAGCAGAGLGSDLYRAGQAVERTRLQAERFIAAAGG
>NZ_CP026368.1|WP_032429092.1|4832075_4832939_+|MurR/RpiR-family-transcriptional-regulator
MSWSIDIISCITDRFVELTATEKRIAQFILDDVAAAAELPIAEIARLTQTSQASVTRFARALGCKDVRELKMKLAQSLAVGQRFILDVPDLEGVQGIYESIISVLETNRRALDIEALKRAVSWLSAARQILALGMGGGSTICAQEIQYRLFRLGLPVVSQSDGLLVRMMSSAVTPQDVVIVLSLGGYTPEIIESAAIASQYGAKVIAITPAGTPLAEQADLVLPLLVRENDYIFKPSTSRYAMLAMVDVLATELAMANKTQAKGKLRRIKLALDSHRGGVDRQPLGD
>NZ_CP026368.1|WP_032454780.1|4831471_4832005_+|GNAT-family-N-acetyltransferase
MKTNTITAGAGLRLTEESDIALLPAIERSAAQAFRQIPALAWLADSEVISVARHHDYLETEHSLLAVAAGQPVGFILTEPLDDALFIAEIAVHQAWQHQGIGRMLLEQVIERARQMAYPAVTLTTFREVPWNAPFYTRLGFAILDELTLPAGLAAKREQETRHGLPPETRCAMRLAL
>NZ_CP026368.1|WP_048296610.1|4830608_4831439_-|GNAT-family-N-acetyltransferase
MELTAVPATQFSSVQLTDILNACFEAYLVPVTQSVEGFVQRFSAEGMSLIDSRVWLAGDEPAAIAIVARRGNMARLAAFALRPAWRGKGLGRKLMQELLTFLQQQEIETVSLEVIRDNHAAVALYQSLGFTRRYGLCGYLSAEPLAAAPGVLQPYPILALLRRAVEESNSQLPWLMDPLTFATLPCRVVTLEQRAFAVLSTSGSRPVLQFLWVEPAARRQGLAQALLMALAQQFPGIGTSVTVPETFTPLFAAAGYAPLSLQQYEMTMECAAAKSA
>NZ_CP026368.1|WP_112201891.1|4827743_4830509_-|sigma-54-dependent-transcriptional-regulator
MRKTELLAFLQNQTDFFDPDNLSDVFTASWLAQRFAMQRNTASHYLNQLVAQDVLVKINTRPVYFLHKKAFCQQFFPLSRSEYASMAELLAESDRQPEQADHFSLLTGHDGSLRKPIEQMKTALFYPNGGLPLLIVGDSGTGKSYMAELMHEFAIAQGLLAPDAPFVSFNCAQYASNPELLAANLFGYVKGAFTGAQSDKAGVFEAANGGMLFLDEVHRLDAQGQEKLFTWLDRKEIYRVGETAHGLPISLRLVFATTEDIHSTFLTTFLRRIPILVSLPDLQQRSREEKEALTLQFFWQEARTLAARLQLTPRLLQVLTQYVYRGNVGELKNVVKYAVASAWARSPGSEMLTVTLHDLPENIMAATPALSEAMGQKEPLLIEPQTSLVWLLRARDPVQGLIHDVQCRILALYEAVLNKKTVWEEAQRSMGEEIETLFDRLIFDNQDASSSQMLLLIAHQVREEYYRLEKRFNIQFNGNCLYALSHYLIHRSRQAASTMSNEKIRLLADFLANKFPLLYRFCEAILDALALKLDIEPRRIDLLLLVLWFQKNGAISQQQVTRAIILAHGYATASSIASVANRLLKSPLFESFDMPLDVTPEAIANQVMAYIERHALASGLIILVDMGSLNAIHSHFNRRLNTPVAIINNVSTGMAMYVGERILHGDMLEDIVREIGDDLAVEHQLYYPQTDKPRAILTTCATGLGAAANLSALLKASIPEALGVDIVACDVETLADPARREPMLSRYDVLAIVGTLDPHLADLPWISLDSLISGEGSRPLMRIFGELATAEQVSEINNLILKNFSLRRVIESVTILDTAKVINQVEQFLLRYEHLAGYEVPNERKVALYVHISCLIERLIRHASPTHYAGRQCPERELATLREAFSVIESGYSVKIPAVELYYIHDILTRETEFIQEDQEF
>NZ_CP026368.1|WP_101995888.1|4839448_4840465_-|Ldh-family-oxidoreductase
MGSVTLSLPEAYDLALAVLSANGFSADHAAAIARNVAAGERDGCASHGLWRLLGIVDTLRKGKVSPDAEPQIHDQAPAIVRADAGGAFSLLAYERALPLLLEKARHSGIAALAINRCVHFSALFADIEPLTEAGLVGLACTPSHAWVAPAGGTRPLFGTNPIAFGWPRREEPPFIVDMATSAAARGEIQLHQRAGKALPEGWGIDSQGQPTTDATEVLNGAMLTFGGHKGSALAAMVELLAGPLIGDMTSAESLAWDNGAGGLPYGGELILALDPQRFLGAQAQEQLARAETLFNAMQDQGARLPGERRFACRQQSERQGVAISHSLHDEICALRQGG
>NZ_CP026368.1|WP_101866262.1|4840476_4842078_-|APC-family-permease
MTIHTTHNSQTRVAESGKFKKQLTLTDLTFIGLGAIFGSGWLFAASHVASIAGPAGIASWVIGGFAVLLLGIVYCELGAALPRAGGIIRYPVFSHGELMGYLLGFITLIAFSSLISIEIVAARQYAAAWFPALTQPGSSSPTLLGWGGQFLLLCFFFALNYYSVKTFARSNNFISVLKFLVPLLVVVTLFAFFKPENLHAQGIAPFGMSGVEAAISAGGIIFAYLGLTPIISVASEVQKPQRTIPIALILSVVLSTIIYVLLQLAFLGSIPTEMLNGGWAEVSKQFSLPYRDIAITLGMGWLAFMVISDAIISPSGTGNIYMNATPRVIYGWAKAGTFFKAFTHIDKASGIPRPALWLTFGLSIFWTLPFPSWEQLISVVSAALVLSYAIAPVTAAGLRRNAPDLPRPFRVRAFGIIGPVSFMVSALIVYWSGWNTLSWLLGLQIVMFVVYVMCKGKVPEHTVSLAQQVKSSLWLIAFYALIILFSWLGSFGGLNVIGHPWDTVLVAAMSLGIYYWGARSCLPQANFSGDEEE
>NZ_CP026368.1|WP_112201895.1|4842093_4843698_-|aldehyde-dehydrogenase-(NADP(+))
MNASQTTAGRQFIAGRRVASGEATLLSLRAVDGEATGHLFYPASREEAAQAAEAAQQAFAIYSQTAPQQRAHFLCAIADELDALGEAFFAIAEQETALPLARLQGERARTSGQLRMLAGVILRGDTFAARIDTALADRQPLPRPDLRQYQQALGPVAVFGASNFPLAFSTAGGDTASALAAGCPVVVKAHEGHMATAELTADAIVRAVARCGLPGGVFNMIFGTDIGAELVRHPAIQAVGFTGSLAGGKALYQLAQQRPQPIPLFAEMSAINPLIILPQALQTRAEALANELVASFTLGGGQFCTRPGLILALRGAGLERFKSALCAAVAGCAPQVLLNAPTLQHYRQGVAALAAHPRIERLASGLAAGAGEAQTQLWQAQVEDLLAQDTLLQTEVFGPLSLLVEVDDAAQLQAVVKALQGQLTATLHAEADDGPLAASLLPLLCEKAGRVLFNGYPTGVEVCDAMVHGGPWPATTDARGTSVGSRAIERFLRPVCLQNAPAALLPPALQDANPLNLLRLVNGQWTREAISSSH
>NZ_CP026368.1|WP_004204197.1|4843712_4844633_-|dihydrodipicolinate-synthase-family-protein
MSNKAIHWSGVFPAVSTQFRSDYSLDLDATHAVMKNLVKDGVSGLVVCGSVGENTSLSTDEKLQIIEVAKDAAGGKIPVIAGVAEFTTAFAQKMAKEAERVGVDGIMVMPALVYSSKPHETAAHFRSVATATDLPIMVYNNPPIYKNDVTPDILATLTDCDNIVCFKDSSGDTRRFIDLRNTVGDRFVLFAGLDDVVVESIAVGAEGWISGMSNAFPREGETLFRLARQQRYEEAMALYRWFMPLLHLDARPDLVQCIKLCEELLGRGSAVTRPPRLALEGETRQQVVAIVEQALATRPALPDVGL
>NZ_CP026368.1|WP_032455015.1|4844784_4845609_-|AraC-family-transcriptional-regulator
MIGVSEAAPPRAVNQPELAVDELSQICEGLARQRPENMAALLNALALIAPLLNAIPNVVFFIKDSEARYLLANLTLARRCGFKTVSSLLGKTSADVFPSALGQGYTEQDLRVLREGVTLRDQLEMHLYNGRERGWCLTQKLALRDVRGQVIGMAGISHDLQEAHARHPAWQRLAIVDDHIRRHYHRPIAMEELTALSGMSIAQIERYCKRIFHLTPRQMIHKVRLEKATELLAGDTPITDIALQCGYTDHSAFSRQFKAMTGSTPRDFRLTLQG
>NZ_CP026368.1|WP_044525286.1|4845919_4846867_+|4-hydroxyproline-epimerase
MTAPRPPIALRAIDSHTGGEPTRLIVDGFPDLGGGSMAERRDRFARDFDRWRQAVILEPRGSDVLVGALLCKPVSAAATAGVIFFNNAGFLNMCGHGTIGLIASLAWLGRILPGVHLIETPVGDVSATLHDDGSVSVQNVPARRWKKQVRVETARGPVIGDIAWGGNWFFLINDHPFAITPAHIPQLTDYAWAVREGLEAAGIRGDDGGVIDHIELFADDDAADSRSFVLCPGKAWDRSPCGTGTSAKLACLAQDGKLQPGAIWRQASIIGSQFTASYQRAAAGIIPTIRGEAWVCGDNQLILNPDDPFCWGIAP
>NZ_CP026368.1|WP_112201896.1|4846863_4847973_+|FAD-binding-oxidoreductase
MKPCDVIVIGAGIIGAACAWQLAKRGQKVTLIDDGQPGATAAGMGHLVCMDDDPAELALSAWSLARWRAITPRMPATCAWRGCGTLWLAESEEEMAVAGEKQRRLAGYQVHSELQTPQQIAGREPLLRSGLAGGLWVPGDSIVYAPNVARWLMADAGDHLTCLHDSAQAITEPEVLLASGKWLQARAIVVACGLEANTLLAENWLRPRKGQLAITDRYGPRVHHQLVELGYGASAHGGGTSVAFNLQPRPTGQLLIGSSRQFDNRERQLDLPLLGQMLDRARHFVPALATLNIIRCWSGLRAASQDGNPLIGPHPTRRGVWLALGHEGLGVTTAPATAELLAAQILGERCPLAPEAWLPARLYHQEAIA
>NZ_CP026368.1|WP_032455020.1|4847969_4848233_+|(2Fe-2S)-binding-protein
MNSTLNITVDGEALTVPEGISVAAALALTGDPTTRQAVNGDPRAPFCGMGVCQECRITVDGRRVLACQTLCRAGMQIERSRYVHAAL
>NZ_CP026368.1|WP_112201897.1|4848213_4849476_+|NAD(P)/FAD-dependent-oxidoreductase
MYTLRCDILILGAGPAGMAAALAAAACDKQVIILDDNPAPGGQIWRAGPQATLPALARRYRDAIAASAAIRVVNGARLIARPSARSVLFETADGGGVVYWQKLILCCGARELSLPFPGWTLPGVTGAGGLQAQIKHGLSLKGEKVVIAGSGPLLLAVADTVNKAGGQVTNIVEQAPLPALLRFASGLWRWPQKLRQLATLAPKGYLSGAQAIRAHGATRLEAVTLRQRGVERTVACDRLAIGYGLVPNIETGLLFGCATAQEAIQVNRWQQTSLADIYAAGECTGFGGSELALAEGEIAGYAAVGASQQAQALFARRARWQRFATAINRTFRLAESLKNAATPESLLCSCEDVRCGDVAAADDWLQAKLTQRCGMGACQGRTCAASARWLYGWPLPQPREPLSPARAETLIALARLSAEP
>NZ_CP026368.1|WP_002887503.1|4849479_4849920_-|homoprotocatechuate-degradation-operon-regulator-HpaR
MHDSLTIALLQAREAAMAYFRPIVKRHNLTEQQWRIVRILAERPSMDFHDLAFRACILRPSLTGILTRMERDGLVLRLKPVNDQRKLYVSLTPAGTALYESAQAEVEETYRLLEAQFTTEKLQQLTSLLEEFIALGVPAGRGDEEE

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Crispr_ID: NZ_CP026368_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026368_4

5124127-5124236

Orphan

Consensus_repeat	Method
CAGCGCAAGCCGGGGAATTTCCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP026368_4

>merge|NZ_CP026368|4|5124127-5124236|CRISPRCasFinder
CAGCGCAAGCCGGGGAATTTCCCGGGTCGCGGCGTTCCGCCTTACCCGGGCTACCGGACAGTGTAAACAGTAGCCCGGCTAAGCGCAGCGCAAGCCGGGGAGTTTCCCGG

>NZ_CP026368|4|4|5124127-5124236|CRISPRCasFinder
CAGCGCAAGCCGGGGAATTTCCCGG	GTCGCGGCGTTCCGCCTTACCCGGGCTACCGGACAGTGTAAACAGTAGCCCGGCTAAGCG
CAGCGCAAGCCGGGGAGTTTCCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026368.1\|WP_020481009.1\|5123119_5123425_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP026368.1\|WP_032454594.1\|5121373_5122057_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|163429
NZ_CP026368.1\|WP_112201940.1\|5119868_5120315_+\|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD	unknown	unknown	gnl\|CDD\|184756
NZ_CP026368.1\|WP_112201941.1\|5120362_5121148_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP026368.1\|WP_112201939.1\|5114055_5116524_+\|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA	unknown	unknown	gnl\|CDD\|236644
NZ_CP026368.1\|WP_112202008.1\|5116532_5118548_+\|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB	unknown	unknown	gnl\|CDD\|184754
NZ_CP026368.1\|WP_112201942.1\|5124259_5124631_-\|plasmid-stabilization-protein	unknown	unknown	gnl\|CDD\|119304
NZ_CP026368.1\|WP_023291678.1\|5122202_5123120_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP026368.1\|WP_023291670.1\|5133160_5133886_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	unknown	unknown	gnl\|CDD\|182227
NZ_CP026368.1\|WP_023291675.1\|5127380_5128733_-\|alpha-glucosidase/alpha-galactosidase	unknown	unknown	gnl\|CDD\|185035
NZ_CP026368.1\|WP_023291673.1\|5129960_5131463_-\|glycine-betaine/L-proline-transporter-ProP	unknown	unknown	gnl\|CDD\|182611
NZ_CP026368.1\|WP_023291671.1\|5132570_5133005_+\|VOC-family-metalloprotein-YjdN	unknown	unknown	gnl\|CDD\|236656
NZ_CP026368.1\|WP_004206396.1\|5118540_5119872_+\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	unknown	unknown	gnl\|CDD\|236882
NZ_CP026368.1\|WP_032454588.1\|5133886_5134339_+\|phosphonate-C-P-lyase-system-protein-PhnG	unknown	unknown	gnl\|CDD\|226151
NZ_CP026368.1\|WP_044525156.1\|5125871_5127287_-\|melibiose:sodium-transporter-MelB	unknown	unknown	gnl\|CDD\|182453
NZ_CP026368.1\|WP_065813075.1\|5112876_5113443_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
NZ_CP026368.1\|WP_004206385.1\|5128972_5129911_+\|transcriptional-regulator-MelR	unknown	unknown	gnl\|CDD\|182416
NZ_CP026368.1\|WP_004153693.1\|5112274_5112565_-\|PerC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|310570
NZ_CP026368.1\|WP_023291672.1\|5132007_5132343_+\|phnA-family-protein	unknown	unknown	gnl\|CDD\|182315
NZ_CP026368.1\|WP_032454592.1\|5124640_5125597_-\|recombinase	unknown	unknown	gnl\|CDD\|310773

Protein	Function_ID	Function_description	E-value
NZ_CP026368.1\|WP_020481009.1\|5123119_5123425_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	1.05092e-57
NZ_CP026368.1\|WP_032454594.1\|5121373_5122057_+\|TerC-family-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	3.64201e-68
NZ_CP026368.1\|WP_112201940.1\|5119868_5120315_+\|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD	gnl\|CDD\|184756	PRK14584, hmsS, hemin storage system protein; Provisional.	2.89489e-71
NZ_CP026368.1\|WP_112201941.1\|5120362_5121148_-\|DsbA-family-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	3.12435e-49
NZ_CP026368.1\|WP_112201939.1\|5114055_5116524_+\|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA	gnl\|CDD\|236644	PRK10049, pgaA, outer membrane protein PgaA; Provisional.	0
NZ_CP026368.1\|WP_112202008.1\|5116532_5118548_+\|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB	gnl\|CDD\|184754	PRK14582, pgaB, poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB.	0
NZ_CP026368.1\|WP_112201942.1\|5124259_5124631_-\|plasmid-stabilization-protein	gnl\|CDD\|119304	pfam10784, Plasmid_stab_B, Plasmid stability protein. This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.	6.75963e-11
NZ_CP026368.1\|WP_023291678.1\|5122202_5123120_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP026368.1\|WP_023291670.1\|5133160_5133886_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	gnl\|CDD\|182227	PRK10079, PRK10079, phosphonate metabolism transcriptional regulator PhnF; Provisional.	1.31998e-165
NZ_CP026368.1\|WP_023291675.1\|5127380_5128733_-\|alpha-glucosidase/alpha-galactosidase	gnl\|CDD\|185035	PRK15076, PRK15076, alpha-galactosidase; Provisional.	0
NZ_CP026368.1\|WP_023291673.1\|5129960_5131463_-\|glycine-betaine/L-proline-transporter-ProP	gnl\|CDD\|182611	PRK10642, PRK10642, proline/glycine betaine transporter ProP.	0
NZ_CP026368.1\|WP_023291671.1\|5132570_5133005_+\|VOC-family-metalloprotein-YjdN	gnl\|CDD\|236656	PRK10148, PRK10148, VOC family metalloprotein YjdN.	2.08906e-93
NZ_CP026368.1\|WP_004206396.1\|5118540_5119872_+\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	0
NZ_CP026368.1\|WP_032454588.1\|5133886_5134339_+\|phosphonate-C-P-lyase-system-protein-PhnG	gnl\|CDD\|226151	COG3624, PhnG, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	3.75878e-65
NZ_CP026368.1\|WP_044525156.1\|5125871_5127287_-\|melibiose:sodium-transporter-MelB	gnl\|CDD\|182453	PRK10429, PRK10429, melibiose:sodium transporter MelB.	0
NZ_CP026368.1\|WP_065813075.1\|5112876_5113443_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	1.437e-05
NZ_CP026368.1\|WP_004206385.1\|5128972_5129911_+\|transcriptional-regulator-MelR	gnl\|CDD\|182416	PRK10371, PRK10371, transcriptional regulator MelR.	0
NZ_CP026368.1\|WP_004153693.1\|5112274_5112565_-\|PerC-family-transcriptional-regulator	gnl\|CDD\|310570	pfam06069, PerC, PerC transcriptional activator. PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.	3.15397e-22
NZ_CP026368.1\|WP_023291672.1\|5132007_5132343_+\|phnA-family-protein	gnl\|CDD\|182315	PRK10220, PRK10220, phnA family protein.	5.50786e-75
NZ_CP026368.1\|WP_032454592.1\|5124640_5125597_-\|recombinase	gnl\|CDD\|310773	pfam06406, StbA, StbA protein. This family consists of several bacterial StbA plasmid stability proteins.	2.77267e-143

>NZ_CP026368.1|WP_020481009.1|5123119_5123425_+|chaperone-modulator-CbpM
MATVTVTFTITELCLRTGVSEEELTEIVGLGMIEPHQPQADAWLFDDSAVTIVHRAVRLRNELELDWPGIAVALTLLDENARLTRENRLLQQRLARFLAHG
>NZ_CP026368.1|WP_023291678.1|5122202_5123120_+|curved-DNA-binding-protein
MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQQQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHASRGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVADGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSKTHTGDLFAVIKIVMPPKPDEKARELWQQLATAEASFDPRKTWGKA
>NZ_CP026368.1|WP_032454594.1|5121373_5122057_+|TerC-family-protein
MYAFLQQWDMAVIMLQIVAIDLLLGGDNAVVIAMACRKLPPQKRTKAIVIGTVGAILARILLLAIALYLLSLPWLKIVGALLLMWIGIRLVSNEEDESEVASSGSLWRTAVTITVADVIMSLDNVLAVAAAGKGHIALVALGVAISIPVIVAGSKLVLALLTRFPAVVLLGGMLIGWIAGSMLVSDPTLRQLFPTAGDGIARLAGAIGALLVLFAGWRRRPRPQVKD
>NZ_CP026368.1|WP_112201941.1|5120362_5121148_-|DsbA-family-protein
MSGHKKYLSVALLSAVLLPAMASAADAPATFTAEQEAQIGKIAADYLVAHPEVLLQASQKLQQIQAEQQASAATQAVLKNAALLTQDKNTPTYGPANGKVTVIEFFDYQCVYCSRLAPVMEQVIKAHPQTRFAFKEWPIFGGRWESSLEAAKTGLQIYQQKGADAYLAYHNGIYATGHNEGKLTTADIQQQAKKAGFDAKKATDVEPVLQSINDLAQEIGLSGTPGVIVMPTTGDTEASITVFPGLADKASLEAAIKKAGG
>NZ_CP026368.1|WP_112201940.1|5119868_5120315_+|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD
MNENTLILTEHRVLPRLVDAGLTLLAWLGFLFFLYANLLMQFIAPPSPRWSSLMDSLNTALVYLLIAALNGWLLILWYHYNRRRVHTRRHTAVLTLRDEELASSFNVAPQIISEMSRYNLLTVYHDHIGQIIDLKSHALPPPEERDQE
>NZ_CP026368.1|WP_004206396.1|5118540_5119872_+|poly-beta-1,6-N-acetyl-D-glucosamine-synthase
MTDRIIALCILCLVFGLPLGVAAAFTGELILDFVFFWPLFMSVLWITGGLYFWFQLERHWPWGEDTPPPSLPGNPLISILIPCFNEEKNARETISAALAQRYANLEVIAINDGSSDNTAQVLQQLAQEEPRLRVIHLAANQGKAVALKAGAAAARGDLLVCIDGDALLDRDTAAWLVAPLIHYPHVGAVTGNPRIRTRSTLIGRIQVGEFSSIIGLIKRTQRIYGRVFTVSGVIAAFRRQALADVGYWSPDMITEDIDISWKLQLRHWDIFFEPRALCWILMPETLKGLWKQRLRWAQGGAEVFLVNLRRLFHWQHHRMWPLFLEYACSTLWAFAYAVTILLFILSRLMPLPDNLTVHSLFPPEFTGMLLGLMCLLQFVASLYIERRYEKKVAKSLFWVIWFPMVYWMIGLLTTLVAFPKVMLKRQRSRARWVSPDRGKGSLR
>NZ_CP026368.1|WP_112202008.1|5116532_5118548_+|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB
MLNTTLRNGLMLLGWLCLIFSVRAEEVPFLAPQQRPQLEANNPWPADRFLVLAYHDVEDDAADQRYLSVRTSALNEQIAWLLHHGYHAVSVQDILDAHHGLKPLPPKAFLLSFDDGYSSFYTRVWPLLKAWNVPALWAPVGSWVDTPANQPVNFGGLMTPRDRFATWEMVRELSRSPLVEIGAHTWASHYGLPANPQGSREPAAANRGWDKTTGRYESDAQFTRRMADDVQKVTAKIHDVAGKAPRAWVWPYGAASGSTLAIAKQQGYQLAFTLNDGLGNVKDLDNIPRMLIAGNPSIKAFANAVTQIQEADPVRVMHVDLDYVYDPNPVQQAKNIDKLVQRVYDMKISHVFLQAFSDPQGDGTVKSLYFPNRWLPMRADLFNFVSWQLQTRGGVKVYAWMPVLAFDLSSDLPRVQRWDPQTGKALLARQPYVRLSPWDPRVRQQITGIYEDLARHASFSGILFHDDAVLTDFEDVSPEAVAAWRQSGLAHDAGPVPQSPQERQAWMRFKSQTLTRFTLQLRQSVQAIRGPQVKTARNLFALPILEPQSEAWFAQNLDDFLAAYDWTVPMAMPLMESVPIDASQAWLTRLVQAVARRPGALKKTIFELQARDWNRRQHNAIPDQQLADWMHLLRLNGVKNYGYYPDDFINNQPDISRIRPQFSSWWYPDHD
>NZ_CP026368.1|WP_112201939.1|5114055_5116524_+|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA
MNIWQIEMERSPYSNTLLFNRNTKLSLSIGVLLLFPTLVQGADSLYDQQILQARQGQYAPFLSYLQQYQLRHALTPSQVADWLQVALWAGQDDEVVKVWRRYQVYMPLPARGTAAAAQAMRNQKQWQASLLLWQQALSQAPDSDDYRIGYIKTLADARKDGEALSEARRLVAEQASIAHLQTLSYVYLRLGKSWDQLLVDTQILDREPQNKAALASLMATLTRNRIDSPALGLANNVELTPAEKRNLQLNAAAELVRLADTPSREEKARYALARTALAQYDAMIAAWRPDPQAAPDISRARIDRLGALYANADYAQVIREYQSLMAQQQAVPDWAIGWVISSYIALKQIEPALALIHQHPSWLTSQQNEEHELFYALLDTAQYPAAQRYVARLTRNAPYIRHLYGSPTPQPNDDWLTAQSLNVHYLSATNALPQAEARMQRLAATAPGNQGLQIDYAALLQDRGLPRAAERQLKAAEALEPASLQLERQQAWVALDLQEWRQMDLLTDDVIARSPRDLNTQRLARARDIHHFSELRLSVGKGLHSDNPVSGTHDLSFEMAIYSPPIADSWRLFGGHRFAQGNFEEGKGSRRQLFAGIEWRPRDAWGELELSSVNFHGENKPGVRLSAAHDVNDRWQLGGELERISQQTPLRALRNGVSANRGEGWLRWYQNERREYRVSAAASRFTDHNRRQEYTLSGKERLWQTPWLTLDLQPGLSASANSRTDTAYYSPARDLAATAALAVDHTLYQRYDTVWSQQLLAGGGSYWQKNHAAGAITTLGYGQRLRWNNLVDAGVMLNWDKRPYDGKRENNLAITVDANIRF
>NZ_CP026368.1|WP_065813075.1|5112876_5113443_-|LuxR-family-transcriptional-regulator
MILVTQDHYLFQGVKNFFPDIIQLDSSGKAILDNEVDELSLLVDSRSPLCHYDYLVMEAAQSRKRICCIVLDMRHREEHLLSLKSFLNMSLSPADMATLFGLFLEMKSKRLTKEWFDNLRLSMTEQLMLRFLEAGMTMEEVAVNLNTSLKSLYRKRTALYERLGLDNFNEACLFIFKNKLLDQSGRSP
>NZ_CP026368.1|WP_004153693.1|5112274_5112565_-|PerC-family-transcriptional-regulator
MRIRDSIAERLEACGLYRRAASRWIEVMQRCLDDEDREWIRHHRNQCLKKAQRPPAPKEEFADLHQAAKETQYRMGIAKPYGEAFRLPGKGKTAAE
>NZ_CP026368.1|WP_112201942.1|5124259_5124631_-|plasmid-stabilization-protein
MTLERRKVLIYLRPDISASERFADAKIEAHHRGDRGDMSRTALLAGLALGEVDSRLPSMLAALLAEDTKPETLRKMLASFLEIQPASSAPAAAPAAAPAKTPEPPAPVSESVSARNLAGSLPD
>NZ_CP026368.1|WP_032454592.1|5124640_5125597_-|recombinase
MRIFIDDGSTNIKMLWEQDGETFTHISPNSFKRGWSATFGSGKPFNYTVDDEKYSFDLITPDALPTNNIDWQYSPLNSIAVHHALLTSGLEPQDVEIVVTLPLTEFYDEDAQYRLDNIERKKKSLLREVKLNKGVVFNITKVTVRPESIPAGISLCDELKPSHSVLIIDLGGTTLDISMVAGQMTSVSRIYGDPKLGVSLVTDAVKLALARANTDTSSYNVDQIIINRHDEAYLTDNINDPDAVSEVKKVITNSIERLTTRVLTAIDSFKGYSHAIVIGGGAPLVADAIRERMGLREDRFVVAEEPQFALVRGLKIIG
>NZ_CP026368.1|WP_044525156.1|5125871_5127287_-|melibiose:sodium-transporter-MelB
MSISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDIVGLSVGVVGTLFLVARILDAIADPIMGWIVNCTRSRWGKFKPWILIGTITNSVVLYMLFSAHHFSGGALLAWVWLTYLLWGFTYTIMDVPFWSLVPTITLDKREREQLVPYPRFFASLAGFVTAGVTLPFVSAVGGADRGFGFQMFTLVLIAFFVVSTLVTLRNVHEVYSSDSGVSEDASHLSLRQMVALIYKNDQLACLLGMALAYNTAANIIAGFAIYYFTYVIGSAEMFPYYMSYAGAANLLTLVLFPRLVKGLSRRILWAGASIMPVLGCGVLLLMALSGVYNVALISLAGVLLNIGTALFWVLQVIMVADTVDYGEYTMNIRCESIAYSVQTLVVKAGSAFAAWFIAIVLGIIGYVPNVAQSSQTLLGMQAIMIALPTLFFALTLFLYFRYYKLNGDMLRRIQIHLLDKYRRVPENVAEPERPIVVPNQV
>NZ_CP026368.1|WP_023291675.1|5127380_5128733_-|alpha-glucosidase/alpha-galactosidase
MTAPKITFIGAGSTVFVKNILGDVFQRPALKSAHVALMDIDDTRLEESHTVVRKLMDSVGAKGEISCHRDRKTALQGADFVVVAFQIGGYEPCTVTDFEVCKRHGLEQTIADTLGPGGIMRALRTIPHLWAICDDMTEVCPDATLLNYVNPMAMNTWAMYARYPHIKQVGLCHSVQGTAEELARDLDLNPADLRYRCAGINHMAFYLSLEKKLADGSYVSLYPDLLQAYADGRAPKPNLHGNPRCENIVRYEMFKKLGYFVTESSEHFAEYTPWFIKPGREDLIARYKVPLDEYPKRCVEQLANWHQELESYQRGERIEVKPSREYASTIMNAIWTGEPSVVYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGALPAHLAALMQTNINVQTLLTEAILTENRDYVYYATMMDPHTAAVLGIEEIYALVDDLIASHGDWLPSWLHR
>NZ_CP026368.1|WP_004206385.1|5128972_5129911_+|transcriptional-regulator-MelR
MEYRFTSLPPDPFMCSSDEKQSRSPLALYSEYQRMDIELRPPHAMPTSHWHGQVEVNVPFDGDVEYLINNEVVRIEKGYITLFWACTPHQLTRPGDCQQMAIFNLPMHLFLSWPLDRELINHVTHGMVIKSLAAQQLSAFEVRRWQQELNHDNEQIRQLAIDEIALMLKRLSLAGWQPILVNKTSRTHKNSVSRHAQFYVSQMLEFIAAHYDQALTVNAVAEHVKLNPNYAMGVFQRVMQQTMKQYITAMRINHVRALLSDTDKTILDIALTAGFRSSSRFYSTFTRYVGMPPQQYRKLSQQRRHGLALPEA
>NZ_CP026368.1|WP_023291673.1|5129960_5131463_-|glycine-betaine/L-proline-transporter-ProP
MLKRKKIKPITLKDVTIIDDGKLKKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPDANPSVQMIAALGTFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVMGAGVVVLISSVVGEQNFLEWGWRIPFFLALPLGIIGLYLRHALEETPAFQQHVDTMEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVISTNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMVGMLFVQPVIGMLSDRFGRRPFILIGSVALFALSIPAFIMINSNVTSLIFAGLLLLAVVLNCFIGVMASSLPAMFPTHIRFSALASAFNISVLIAGLTPTLAAWLVETTQNLMMPAYYLMVIAVVGMATGLSMKETANRPLKGATPAASDIQEAKEILGEHYDNIEQKIEDIDQEIADLQAKRSRLVQQHPRIND
>NZ_CP026368.1|WP_023291672.1|5132007_5132343_+|phnA-family-protein
MQLPHCPKCDSTYTYEDNGMYICPECAHEWNPAEATEENDVLIVKDANGNLLADGDSVTVVKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMKLKSEFVKKN
>NZ_CP026368.1|WP_023291671.1|5132570_5133005_+|VOC-family-metalloprotein-YjdN
MSLSPYLAFAGNCAEAIAFYQQTLGAELMFKMTFGEMPPSAQEASDGCPSGQKMADDAIAHASLRIGNGELMLSDSAFGPDVHYAGFTLVLDPNDVAEGQRWFDALAVGGRIEMAWQETFWAHGFGKVVDRFGVPWMINVVKQG
>NZ_CP026368.1|WP_023291670.1|5133160_5133886_+|phosphonate-metabolism-transcriptional-regulator-PhnF
MHLSRHPTSYPTRYQEIAARLEQELRHHYRCGDYLPAEQQLATRFDVNRHTLRRAIDQLVERGWVQRRQGVGVLVLMRPIDYPLNAQARFSQNLLEQGSDPTSEKLLSVLRPASAHVAEAFGISEGENVIHLRTLRRVNGVALCLIDHYFADLRFWPVLQTFSHGSLHNLLRDRLDVELTRVRTKISARRAQAKESKLLEIPNMAPLLCVRTLNSRQGEQAVTEYSVSLTRADMIEFTMEH
>NZ_CP026368.1|WP_032454588.1|5133886_5134339_+|phosphonate-C-P-lyase-system-protein-PhnG
MHFDTATRQRWMSVLAHSEPQDLLARMHALQLAPEYELIRSPETGLVQLQARMGGIGDRFFAGDATLTRAAVRLADGTLGYSWILGRDRPHAERCAAIDALLQSPRHFHNLMETLITPLEALRSARIEARRAEVNASRVDFFTLVRGDNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP026368_1	1.1\|4200837\|42\|NZ_CP026368\|CRISPRCasFinder	4200837-4200878	42	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8452-8493	1	0.976
NZ_CP026368_1	1.1\|4200837\|42\|NZ_CP026368\|CRISPRCasFinder	4200837-4200878	42	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8452-8493	1	0.976
NZ_CP026368_1	1.1\|4200837\|42\|NZ_CP026368\|CRISPRCasFinder	4200837-4200878	42	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11388-11429	1	0.976
NZ_CP026368_1	1.1\|4200837\|42\|NZ_CP026368\|CRISPRCasFinder	4200837-4200878	42	NZ_CP026278	Klebsiella oxytoca strain KONIH2 plasmid pKOR-0e8e, complete sequence	8607-8648	2	0.952
NZ_CP026368_2	2.1\|4438922\|30\|NZ_CP026368\|CRISPRCasFinder	4438922-4438951	30	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	604956-604985	6	0.8
NZ_CP026368_2	2.1\|4438922\|30\|NZ_CP026368\|CRISPRCasFinder	4438922-4438951	30	NZ_CP021468	Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1	218576-218605	8	0.733
NZ_CP026368_2	2.1\|4438922\|30\|NZ_CP026368\|CRISPRCasFinder	4438922-4438951	30	NZ_CP011248	Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence	179086-179115	8	0.733
NZ_CP026368_2	2.1\|4438922\|30\|NZ_CP026368\|CRISPRCasFinder	4438922-4438951	30	NZ_CP048816	Caulobacter rhizosphaerae strain KCTC 52515 plasmid unnamed	64280-64309	8	0.733
NZ_CP026368_2	2.1\|4438922\|30\|NZ_CP026368\|CRISPRCasFinder	4438922-4438951	30	NZ_CP032919	Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence	178847-178876	8	0.733
NZ_CP026368_2	2.1\|4438922\|30\|NZ_CP026368\|CRISPRCasFinder	4438922-4438951	30	NZ_CP033029	Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence	178931-178960	8	0.733
NZ_CP026368_3	3.1\|4839343\|35\|NZ_CP026368\|CRISPRCasFinder	4839343-4839377	35	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	406265-406299	8	0.771
NZ_CP026368_2	2.1\|4438922\|30\|NZ_CP026368\|CRISPRCasFinder	4438922-4438951	30	NZ_CP017944	Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence	97164-97193	9	0.7
NZ_CP026368_2	2.1\|4438922\|30\|NZ_CP026368\|CRISPRCasFinder	4438922-4438951	30	NZ_LR723673	Rhizobium flavum strain YW14 plasmid 4	86785-86814	9	0.7
NZ_CP026368_2	2.1\|4438922\|30\|NZ_CP026368\|CRISPRCasFinder	4438922-4438951	30	CP000618	Burkholderia vietnamiensis G4 plasmid pBVIE02, complete sequence	60928-60957	9	0.7

1. spacer 1.1|4200837|42|NZ_CP026368|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 1, identity: 0.976

tgttggcacaacctcaccggtacgcagcgtggttactgggtt	CRISPR spacer
tgttggcacaacctcgccggtacgcagcgtggttactgggtt	Protospacer
***************.**************************

2. spacer 1.1|4200837|42|NZ_CP026368|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 1, identity: 0.976

tgttggcacaacctcaccggtacgcagcgtggttactgggtt	CRISPR spacer
tgttggcacaacctcgccggtacgcagcgtggttactgggtt	Protospacer
***************.**************************

3. spacer 1.1|4200837|42|NZ_CP026368|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 1, identity: 0.976

tgttggcacaacctcaccggtacgcagcgtggttactgggtt	CRISPR spacer
tgttggcacaacctcgccggtacgcagcgtggttactgggtt	Protospacer
***************.**************************

4. spacer 1.1|4200837|42|NZ_CP026368|CRISPRCasFinder matches to NZ_CP026278 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-0e8e, complete sequence) position: , mismatch: 2, identity: 0.952

tgttggcacaacctcaccggtacgcagcgtggttactgggtt	CRISPR spacer
tgttggcacaacctcacttgtacgcagcgtggttactgggtt	Protospacer
*****************. ***********************

5. spacer 2.1|4438922|30|NZ_CP026368|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 6, identity: 0.8

ggggccgagggtgccgtgatcggcaacatt	CRISPR spacer
acagccgcggctgccgtgatcggcaacatc	Protospacer
. .**** ** ******************.

6. spacer 2.1|4438922|30|NZ_CP026368|CRISPRCasFinder matches to NZ_CP021468 (Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1) position: , mismatch: 8, identity: 0.733

ggggccgagggtgccgtgatcggcaacatt	CRISPR spacer
accgcccaggctgccgtgatcggcaatagc	Protospacer
.  *** *** ***************.* .

7. spacer 2.1|4438922|30|NZ_CP026368|CRISPRCasFinder matches to NZ_CP011248 (Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence) position: , mismatch: 8, identity: 0.733

ggggccgagggtgccgtgatcggcaacatt	CRISPR spacer
tgcaacatgggcgccgtgatcggcaacatc	Protospacer
 * . *. ***.*****************.

8. spacer 2.1|4438922|30|NZ_CP026368|CRISPRCasFinder matches to NZ_CP048816 (Caulobacter rhizosphaerae strain KCTC 52515 plasmid unnamed) position: , mismatch: 8, identity: 0.733

ggggccgagggtgccgtgatcggcaacatt	CRISPR spacer
cgttccgaggatgccgtgatcggcatggat	Protospacer
 *  ******.**************  . *

9. spacer 2.1|4438922|30|NZ_CP026368|CRISPRCasFinder matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 8, identity: 0.733

ggggccgagggtgccgtgatcggcaacatt	CRISPR spacer
tgcaacatgggcgccgtgatcggcaacatc	Protospacer
 * . *. ***.*****************.

10. spacer 2.1|4438922|30|NZ_CP026368|CRISPRCasFinder matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 8, identity: 0.733

ggggccgagggtgccgtgatcggcaacatt	CRISPR spacer
tgcaacatgggcgccgtgatcggcaacatc	Protospacer
 * . *. ***.*****************.

11. spacer 3.1|4839343|35|NZ_CP026368|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.771

tgacggcgctccgcgccttacccgggctacacaac	CRISPR spacer
tagcggcgctgcgcgccttatccgggctacgatcc	Protospacer
*..******* *********.*********.   *

12. spacer 2.1|4438922|30|NZ_CP026368|CRISPRCasFinder matches to NZ_CP017944 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.7

ggggccgagggtgccgtgatcggcaacatt	CRISPR spacer
cttgccgatggtgccgtgatcggcgatcga	Protospacer
   ***** ***************.*.

13. spacer 2.1|4438922|30|NZ_CP026368|CRISPRCasFinder matches to NZ_LR723673 (Rhizobium flavum strain YW14 plasmid 4) position: , mismatch: 9, identity: 0.7

ggggccgagggtgccgtgatcggcaacatt	CRISPR spacer
atctacgagggcgcggtgatcggcaacagc	Protospacer
.    ******.** ************* .

14. spacer 2.1|4438922|30|NZ_CP026368|CRISPRCasFinder matches to CP000618 (Burkholderia vietnamiensis G4 plasmid pBVIE02, complete sequence) position: , mismatch: 9, identity: 0.7

ggggccgagggtgccgtgatcggcaacatt	CRISPR spacer
atcaccgcgggtgccgcgatcggcaaccgg	Protospacer
.  .*** ********.**********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1202916 : 1264643

Escherichia_phage(27.66%)

holin,capsid,tRNA,lysis,terminase,integrase,plate,tail,portal,head

attL 1231832:1231847|attR 1249028:1249043

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002914147.1\|1202916_1203684_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002914145.1\|1203723_1204071_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_071839001.1\|1204230_1204449_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	7.8e-33	84.7
WP_064165080.1\|1204530_1205691_-	phage late control D family protein	Q7Y4C6	Escherichia_virus	5.2e-176	81.5
WP_064165081.1\|1205690_1206170_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	4.8e-67	78.3
WP_086647556.1\|1206183_1208625_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	1.0e-290	71.8
WP_015959005.1\|1208617_1208755_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	2.2e-17	91.1
WP_004195711.1\|1208769_1209045_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.4e-31	77.3
WP_014343412.1\|1209105_1209621_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	3.2e-69	75.6
WP_071562446.1\|1209634_1210816_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	7.9e-196	86.6
WP_087761950.1\|1210925_1212086_-\|tail	phage tail protein	S4TP62	Salmonella_phage	5.1e-46	50.7
WP_032413889.1\|1212165_1212432_-	hypothetical protein	A0A2H5BN44	Klebsiella_phage	6.2e-32	81.8
WP_142673906.1\|1212433_1214518_-	hypothetical protein	A0A2H5BN52	Klebsiella_phage	2.7e-311	90.0
WP_087749844.1\|1214495_1215092_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	4.7e-48	53.5
WP_047669802.1\|1215084_1215993_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	2.6e-114	71.5
WP_004195884.1\|1215997_1216345_-	25-like lysozyme family protein	Q7Y4D7	Escherichia_virus	4.9e-45	77.4
WP_087749843.1\|1216341_1216977_-\|plate	phage baseplate assembly protein V	M1SV78	Escherichia_phage	6.9e-98	83.9
WP_047669806.1\|1217045_1217495_-	phage virion morphogenesis protein	O80313	Escherichia_phage	4.2e-49	68.0
WP_023323002.1\|1217487_1217955_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	8.2e-64	74.8
WP_064188300.1\|1218050_1218482_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	1.5e-40	64.7
WP_064188299.1\|1218478_1218976_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	1.3e-80	86.7
WP_019725381.1\|1218962_1219253_-\|holin	holin	A0A0M5M1H1	Salmonella_phage	5.0e-35	79.6
WP_019725382.1\|1219257_1219461_-\|tail	tail protein	S4TTA0	Salmonella_phage	9.5e-25	79.1
WP_009309691.1\|1219460_1219967_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	5.4e-61	84.3
WP_087761953.1\|1220063_1220807_-\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	2.5e-99	79.5
WP_025710540.1\|1220810_1221869_-\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	4.9e-165	83.8
WP_040227518.1\|1221942_1222797_-\|capsid	GPO family capsid scaffolding protein	Q94MB7	Escherichia_virus	1.3e-126	81.3
WP_087761952.1\|1222962_1224732_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	2.8e-306	87.9
WP_004195876.1\|1224731_1225775_+\|portal	phage portal protein	M1SV64	Escherichia_phage	6.8e-167	82.4
WP_087761934.1\|1226290_1226485_-	hypothetical protein	S4TRZ0	Salmonella_phage	5.1e-12	64.1
WP_019704249.1\|1226483_1226915_+	hypothetical protein	S4TUD6	Salmonella_phage	3.0e-68	89.5
WP_019704250.1\|1226987_1227218_-	DinI-like family protein	A0A218M4I0	Erwinia_phage	2.7e-28	77.6
WP_032419998.1\|1227221_1227407_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	6.0e-18	77.0
WP_087761933.1\|1227528_1229754_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	91.0
WP_086647545.1\|1229746_1230028_-	hypothetical protein	A0A218M4I8	Erwinia_phage	1.4e-42	90.3
WP_032710449.1\|1230024_1230321_-	DUF3850 domain-containing protein	A0A2D1GP44	Escherichia_phage	3.0e-11	45.5
WP_015370189.1\|1230321_1230543_-	TraR/DksA family transcriptional regulator	A0A218M4I6	Erwinia_phage	5.3e-29	86.3
WP_064165129.1\|1230542_1230776_-	DUF2732 domain-containing protein	Q6K1F6	Salmonella_virus	6.0e-23	76.6
WP_015370191.1\|1230839_1231127_-	hypothetical protein	F1BUS4	Erwinia_phage	1.3e-24	57.0
WP_064165139.1\|1231207_1231408_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	1.9e-17	82.0
WP_015370192.1\|1231415_1231925_-	phage regulatory CII family protein	Q6K1F8	Salmonella_virus	9.2e-85	93.5
1231832:1231847	attL	NA	NA	NA	NA
WP_015370193.1\|1231956_1232184_-	hypothetical protein	NA	NA	NA	NA
WP_064165128.1\|1232308_1233166_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	4.0e-88	56.0
WP_071647611.1\|1233174_1233513_+	DUF2511 domain-containing protein	A0A0M3ULF8	Salmonella_phage	1.7e-34	63.4
WP_087761932.1\|1233534_1234035_+	hypothetical protein	A0A1D9C9Q4	Salinivibrio_phage	4.0e-48	62.0
WP_064165127.1\|1234118_1235150_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	1.3e-175	86.7
WP_044524405.1\|1235381_1235840_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_112201299.1\|1235897_1237256_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_023290687.1\|1237264_1237747_-	OmpA family protein	NA	NA	NA	NA
WP_023290686.1\|1237760_1238984_-	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_023290685.1\|1238976_1239486_-	YfiR family protein	NA	NA	NA	NA
WP_023290684.1\|1239828_1240899_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	3.7e-91	51.8
WP_112201300.1\|1240908_1242030_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_080820183.1\|1242092_1242965_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_060589671.1\|1242961_1244122_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_002914111.1\|1244376_1244712_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_004145664.1\|1244983_1245721_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_023290681.1\|1245852_1246833_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_023290680.1\|1246829_1247561_+	polyphenol oxidase	NA	NA	NA	NA
WP_004206837.1\|1247689_1250263_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	6.9e-128	35.4
1249028:1249043	attR	NA	NA	NA	NA
WP_023290679.1\|1256331_1257630_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.4e-44	31.7
WP_004201811.1\|1257633_1257957_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_023290677.1\|1257998_1259354_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_044524371.1\|1259474_1262126_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_050533275.1\|1262160_1262859_-	DTW domain-containing protein	NA	NA	NA	NA
WP_002914091.1\|1262928_1263354_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	6.0e-13	40.2
WP_023290674.1\|1263557_1264643_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_2

1436644 : 1534341

Klebsiella_phage(26.0%)

holin,tRNA,transposase,terminase,integrase,plate,tail,protease,portal

attL 1465922:1465945|attR 1511497:1511520

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_112201319.1\|1436644_1437994_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_023290570.1\|1437990_1438680_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_110244209.1\|1438679_1440359_+	OmpA family protein	NA	NA	NA	NA
WP_112201320.1\|1440361_1440853_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_112201321.1\|1442137_1444495_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_110244207.1\|1445120_1445591_+	DUF3828 domain-containing protein	NA	NA	NA	NA
WP_110244205.1\|1448521_1449322_+	hypothetical protein	NA	NA	NA	NA
WP_110244204.1\|1449410_1449995_+	hypothetical protein	NA	NA	NA	NA
WP_142293038.1\|1450239_1450545_+	hypothetical protein	NA	NA	NA	NA
WP_101996151.1\|1450546_1450810_+	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	1.2e-06	50.0
WP_112201322.1\|1450812_1452021_+	hypothetical protein	NA	NA	NA	NA
WP_112201323.1\|1452013_1455385_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_112201324.1\|1455404_1457012_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_023290555.1\|1457045_1458815_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_112201325.1\|1458778_1459861_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_048336261.1\|1459896_1460421_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_112201326.1\|1460425_1462897_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_087824995.1\|1462897_1463782_+	hypothetical protein	NA	NA	NA	NA
WP_142673908.1\|1463771_1464332_+	hypothetical protein	NA	NA	NA	NA
1465922:1465945	attL	NA	NA	NA	NA
WP_112201327.1\|1466139_1467315_+\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	1.9e-202	86.1
WP_112201328.1\|1467355_1468165_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_080795253.1\|1468205_1468388_-	hypothetical protein	G3CFG7	Escherichia_phage	6.1e-15	65.5
WP_112201329.1\|1468395_1469061_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	6.7e-51	66.7
WP_048267938.1\|1469061_1469316_-	hypothetical protein	NA	NA	NA	NA
WP_077254344.1\|1469308_1469533_-	hypothetical protein	S4TVX5	Salmonella_phage	1.3e-14	53.8
WP_004104281.1\|1469529_1469658_-	hypothetical protein	NA	NA	NA	NA
WP_112201330.1\|1469847_1470708_-	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.6e-71	52.7
WP_112201331.1\|1470789_1471602_-	DUF2303 family protein	NA	NA	NA	NA
WP_004104278.1\|1471645_1472005_-	hypothetical protein	NA	NA	NA	NA
WP_112201332.1\|1472429_1472609_+	hypothetical protein	S5FM78	Shigella_phage	1.7e-14	66.1
WP_142673909.1\|1472582_1472777_-	hypothetical protein	NA	NA	NA	NA
WP_004104276.1\|1473570_1474281_-	LexA family transcriptional regulator	K7P8B2	Enterobacteria_phage	4.0e-86	67.5
WP_004104275.1\|1474388_1474583_+	hypothetical protein	K7PLQ6	Enterobacteria_phage	3.6e-21	79.4
WP_112201333.1\|1474660_1475176_+	DNA-binding protein	A0A1C9II13	Salmonella_phage	5.2e-59	63.4
WP_112201334.1\|1475214_1475493_+	hypothetical protein	NA	NA	NA	NA
WP_004104272.1\|1475654_1475930_+	hypothetical protein	NA	NA	NA	NA
WP_112201335.1\|1475922_1477452_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	3.3e-202	66.7
WP_112201336.1\|1477448_1478420_+	DNA primase	A0A286N2Q0	Klebsiella_phage	1.2e-109	61.1
WP_112201979.1\|1478389_1479034_+	NinG family protein	A0A1W6JNX3	Morganella_phage	1.5e-39	57.4
WP_112201337.1\|1479030_1479675_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	2.0e-84	68.2
WP_087473058.1\|1479664_1480069_+	antitermination protein	S5M7R9	Escherichia_phage	5.5e-32	53.2
WP_060591433.1\|1480248_1480440_+	hypothetical protein	Q8SBE3	Shigella_phage	5.8e-24	87.3
WP_112201338.1\|1480590_1481643_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	4.6e-171	80.4
WP_087473056.1\|1481787_1482135_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	5.7e-38	70.1
WP_004884314.1\|1482137_1482677_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	6.7e-102	99.4
WP_087473054.1\|1482673_1483021_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	8.0e-40	80.9
WP_112201339.1\|1483017_1483293_+	hypothetical protein	G8C7W1	Escherichia_phage	2.7e-14	47.2
WP_112201340.1\|1483243_1483435_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	4.9e-23	88.1
WP_112201341.1\|1483466_1483667_+	hypothetical protein	K7PHC3	Enterobacterial_phage	9.3e-17	68.3
WP_112201342.1\|1483731_1483977_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.8e-33	96.3
WP_107334310.1\|1484202_1484463_+	hypothetical protein	NA	NA	NA	NA
WP_023320792.1\|1484529_1484715_+	hypothetical protein	Q8W634	Enterobacteria_phage	1.9e-11	61.1
WP_014228567.1\|1485035_1485527_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	6.4e-67	84.0
WP_070984122.1\|1485526_1487635_+\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	83.5
WP_070984123.1\|1487631_1487847_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.3e-24	77.1
WP_020317329.1\|1487843_1489343_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.1e-247	83.6
WP_071993325.1\|1489287_1491303_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	85.4
WP_025714421.1\|1491383_1491710_+	DUF2190 family protein	K7PJY3	Enterobacterial_phage	4.7e-34	67.3
WP_020317349.1\|1491702_1491996_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_020317346.1\|1491985_1492537_+\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	5.3e-54	67.9
WP_020804325.1\|1492533_1492932_+\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	3.2e-40	57.8
WP_023304948.1\|1492939_1493422_+	hypothetical protein	M9NYX0	Enterobacteria_phage	5.7e-60	68.6
WP_020804327.1\|1493464_1493860_+\|tail	phage tail protein	M9NZD7	Enterobacteria_phage	3.7e-09	28.4
WP_032420719.1\|1493880_1494198_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.4e-19	51.5
WP_065800056.1\|1495662_1496586_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	5.6e-173	97.4
WP_032420722.1\|1497940_1498414_+	hypothetical protein	A0A286S298	Klebsiella_phage	3.9e-53	63.5
WP_112201343.1\|1498400_1498883_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	1.1e-55	68.4
WP_029497207.1\|1498890_1499277_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	4.7e-33	50.8
WP_029497208.1\|1499273_1502342_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	66.5
WP_112201344.1\|1502419_1504171_+	GDSL family lipase	A0A286S1P0	Klebsiella_phage	1.4e-23	53.3
WP_112201345.1\|1504173_1504932_+	hypothetical protein	NA	NA	NA	NA
WP_112201980.1\|1505022_1508157_-	SGNH/GDSL hydrolase family protein	A0A1I9SEN3	Klebsiella_phage	1.1e-103	32.0
WP_112201346.1\|1508269_1508818_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	3.2e-91	95.1
WP_074160389.1\|1509022_1509274_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|1509273_1510758_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_112201347.1\|1510834_1511074_+	DNA polymerase V	I6PD82	Cronobacter_phage	6.8e-22	55.7
WP_032422721.1\|1511030_1511402_+	hypothetical protein	K7PGV5	Enterobacterial_phage	9.2e-26	50.9
WP_023290545.1\|1511608_1512538_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.6e-135	83.4
1511497:1511520	attR	NA	NA	NA	NA
WP_023290544.1\|1512827_1513589_+	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_085551268.1\|1513646_1514975_-	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_023290542.1\|1515342_1515627_+	DUF406 family protein	NA	NA	NA	NA
WP_048336257.1\|1515784_1517095_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_112201348.1\|1517094_1519239_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_004201794.1\|1519448_1519934_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_004201792.1\|1519952_1520504_-	endonuclease SmrB	NA	NA	NA	NA
WP_023290538.1\|1520671_1521604_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_023290537.1\|1521646_1522732_+	chorismate synthase	A0A291AU41	Pandoravirus	1.7e-88	46.9
WP_023290536.1\|1522734_1523559_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_004201787.1\|1523558_1524368_+	TSUP family transporter	NA	NA	NA	NA
WP_032453614.1\|1524367_1524916_+	elongation factor P hydroxylase	NA	NA	NA	NA
WP_023290534.1\|1524947_1525229_+	YfcL family protein	NA	NA	NA	NA
WP_112201981.1\|1525388_1527377_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_002913291.1\|1527535_1528756_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_064157280.1\|1528965_1530141_+	MFS transporter	NA	NA	NA	NA
WP_048336253.1\|1530227_1531205_-	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_142673910.1\|1531315_1532452_+	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	9.4e-21	27.8
WP_112201349.1\|1532515_1533529_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_032453605.1\|1533528_1534341_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_3

1684992 : 1739112

Enterobacteria_phage(18.18%)

holin,capsid,tRNA,lysis,transposase,integrase

attL 1725548:1725607|attR 1740333:1740406

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004201621.1\|1684992_1685688_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_023290438.1\|1685677_1686082_-\|holin	holin-like protein	NA	NA	NA	NA
WP_023290437.1\|1686440_1687373_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_112201367.1\|1687729_1689094_+	carbohydrate porin	NA	NA	NA	NA
WP_044524210.1\|1689249_1690083_+	transcriptional antiterminator BglG	NA	NA	NA	NA
WP_112201368.1\|1690224_1692084_+	PTS beta-glucoside transporter subunit IIABC	NA	NA	NA	NA
WP_112201369.1\|1692099_1693494_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_023290432.1\|1693527_1694262_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	2.8e-50	42.0
WP_112201370.1\|1694390_1695830_+	multidrug resistance outer membrane protein MdtQ	NA	NA	NA	NA
WP_023290430.1\|1695862_1696432_-	DedA family protein	NA	NA	NA	NA
WP_032453512.1\|1696585_1697173_+	YIP1 family protein	NA	NA	NA	NA
WP_032428935.1\|1697364_1698312_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_002912829.1\|1698472_1699027_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	1.3e-20	37.8
WP_112201371.1\|1699112_1700858_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_065804934.1\|1701052_1703350_+	beta-glucosidase BglX	NA	NA	NA	NA
WP_023290425.1\|1703486_1704404_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044524199.1\|1704411_1705569_+	ABC transporter permease	NA	NA	NA	NA
WP_112201372.1\|1705561_1706509_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.8e-24	30.8
WP_112201373.1\|1706492_1707230_+	ABC transporter permease	NA	NA	NA	NA
WP_002912762.1\|1707204_1707318_-	protein YohO	NA	NA	NA	NA
WP_004189065.1\|1707547_1709236_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-259	84.3
WP_023290421.1\|1709229_1709949_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_023290420.1\|1709996_1710467_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.0e-61	73.1
WP_112201374.1\|1710577_1712611_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.0e-53	27.7
WP_023290418.1\|1712764_1713874_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_032453497.1\|1713870_1714332_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004201590.1\|1714306_1714624_-	hypothetical protein	NA	NA	NA	NA
WP_112201375.1\|1714807_1715707_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023290415.1\|1715696_1717040_-	NCS2 family permease	NA	NA	NA	NA
WP_065812296.1\|1717042_1718854_-	adenine deaminase	NA	NA	NA	NA
WP_048336188.1\|1718974_1719889_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023290412.1\|1719885_1720308_-	universal stress protein A	NA	NA	NA	NA
WP_087824197.1\|1720447_1722424_-	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	3.1e-160	45.2
WP_044524189.1\|1722625_1723261_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_023290409.1\|1723328_1725305_-	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	2.4e-160	45.6
1725548:1725607	attL	NA	NA	NA	NA
WP_094487818.1\|1725707_1727066_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_142673911.1\|1727279_1727813_+	hypothetical protein	NA	NA	NA	NA
WP_094487816.1\|1727824_1728667_+	DUF4393 domain-containing protein	Q4ZBL8	Staphylococcus_phage	3.6e-17	31.7
WP_094487815.1\|1728858_1729419_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_112201376.1\|1731090_1732137_+\|transposase	IS481-like element ISKpn28 family transposase	A0A0M3LR35	Mannheimia_phage	6.0e-06	21.9
WP_112201377.1\|1732310_1732757_+	hypothetical protein	NA	NA	NA	NA
WP_112201378.1\|1733060_1733894_+	hypothetical protein	NA	NA	NA	NA
WP_094487813.1\|1733908_1734403_+	hypothetical protein	NA	NA	NA	NA
WP_094487812.1\|1734506_1734851_+	hypothetical protein	NA	NA	NA	NA
WP_112201379.1\|1734850_1737016_+	chemotaxis protein	A0A0N7CEY0	Salmonella_phage	3.6e-05	65.0
WP_094487810.1\|1737732_1738077_+	hypothetical protein	NA	NA	NA	NA
WP_112201380.1\|1738095_1739112_+\|capsid	major capsid protein E	NA	NA	NA	NA
1740333:1740406	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1795210 : 1805261

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_112201393.1\|1795210_1796617_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	8.0e-38	28.5
WP_112201394.1\|1796840_1797905_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.9e-104	54.7
WP_112201395.1\|1797931_1798801_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.7e-110	66.3
WP_043520425.1\|1798832_1799723_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-27	33.2
WP_023297948.1\|1799737_1800292_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	5.0e-52	58.2
WP_112201396.1\|1800472_1801639_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.5
WP_112201397.1\|1801962_1802967_+	acyltransferase	NA	NA	NA	NA
WP_000429184.1\|1803734_1803857_-	small membrane protein	NA	NA	NA	NA
WP_044524123.1\|1804256_1805261_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.8e-31	29.2

DBSCAN-SWA_5

2812484 : 2823367

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_112201579.1\|2812484_2815592_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.3
WP_048334863.1\|2815646_2816912_+	MFS transporter	NA	NA	NA	NA
WP_112201580.1\|2816941_2818030_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	5.0e-205	96.7
WP_004205993.1\|2818114_2818375_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_112201582.1\|2818671_2819532_+	OKP family class A broad-spectrum beta-lactamase	A0A077SL40	Escherichia_phage	3.4e-140	88.5
WP_023289604.1\|2819551_2820313_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.1e-133	99.2
WP_064154652.1\|2820574_2821477_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	4.2e-157	98.3
WP_112201584.1\|2821488_2822754_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.2e-218	92.4
WP_064154654.1\|2822746_2823367_+	aldolase	A0A077SK32	Escherichia_phage	5.9e-110	94.7

DBSCAN-SWA_6

3113532 : 3118465

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064145633.1\|3113532_3114204_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	5.3e-80	59.9
WP_064145632.1\|3114196_3115462_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.3e-208	83.1
WP_064145631.1\|3115463_3115883_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	7.2e-35	56.7
WP_001333465.1\|3116432_3116855_-	hypothetical protein	K7P834	Enterobacteria_phage	2.8e-26	45.3
WP_064145630.1\|3116932_3117481_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	9.0e-86	89.0
WP_069484123.1\|3117883_3118465_+	hypothetical protein	A0A2L1IV26	Escherichia_phage	1.2e-06	100.0

DBSCAN-SWA_7

3125757 : 3155102

Salmonella_phage(23.33%)

integrase

attL 3127858:3127874|attR 3155764:3155780

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_112201668.1\|3125757_3128826_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	96.6
3127858:3127874	attL	NA	NA	NA	NA
WP_048337060.1\|3128822_3129203_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.2e-68	95.2
WP_064145658.1\|3129212_3129695_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	6.5e-80	92.5
WP_031280381.1\|3131331_3131778_+	hypothetical protein	NA	NA	NA	NA
WP_004184721.1\|3131683_3131941_-	hypothetical protein	A0A286N2Q3	Klebsiella_phage	1.3e-42	100.0
WP_064145486.1\|3132094_3132877_-	molecular chaperone	F1C595	Cronobacter_phage	3.2e-113	78.7
WP_004190680.1\|3132873_3133242_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	3.5e-41	63.8
WP_064145487.1\|3133238_3133535_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	2.3e-35	70.8
WP_032416515.1\|3133537_3133744_-	hypothetical protein	H6WRY8	Salmonella_phage	1.1e-23	72.7
WP_087812871.1\|3133743_3134343_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.3e-90	79.4
WP_112201992.1\|3134416_3134641_-	hypothetical protein	NA	NA	NA	NA
WP_032413665.1\|3136012_3136312_-	hypothetical protein	NA	NA	NA	NA
WP_020804596.1\|3136407_3136836_-	hypothetical protein	NA	NA	NA	NA
WP_020804600.1\|3136839_3137061_-	hypothetical protein	A9YWV3	Burkholderia_phage	1.3e-11	49.4
WP_020804604.1\|3137057_3137312_-	hypothetical protein	S5MQM0	Escherichia_phage	1.4e-09	50.6
WP_064145489.1\|3137304_3137508_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	1.3e-26	84.8
WP_064145490.1\|3137504_3138290_-	hypothetical protein	C7BGF1	Burkholderia_phage	3.6e-64	52.5
WP_112201670.1\|3138282_3138618_-	DUF977 family protein	H6WRX9	Salmonella_phage	7.6e-11	43.0
WP_064145491.1\|3138610_3139324_-	Replication protein P	A0A0M3ULE2	Salmonella_phage	9.0e-70	58.4
WP_064145492.1\|3139320_3140241_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	4.8e-92	60.7
WP_064145493.1\|3140592_3141129_-	hypothetical protein	M9NZI6	Enterobacteria_phage	7.0e-59	67.8
WP_023341332.1\|3141131_3141362_-	hypothetical protein	H6WRX5	Salmonella_phage	2.1e-12	45.3
WP_043875424.1\|3141473_3141887_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_102046876.1\|3142074_3142173_+	hypothetical protein	NA	NA	NA	NA
WP_004179600.1\|3142279_3142471_+	YebW family protein	NA	NA	NA	NA
WP_023282477.1\|3142479_3142635_+	hypothetical protein	K7PGY4	Enterobacteria_phage	2.0e-14	71.2
WP_064145494.1\|3142772_3145868_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	4.1e-292	56.8
WP_064145495.1\|3145880_3146969_+	recombinase RecT	H6WRX0	Salmonella_phage	3.7e-107	56.2
WP_064145496.1\|3147003_3147348_+	hypothetical protein	NA	NA	NA	NA
WP_032445494.1\|3147340_3147952_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.1e-39	76.3
WP_012542038.1\|3147948_3148257_+	hypothetical protein	I6PD68	Cronobacter_phage	4.2e-24	56.9
WP_004892750.1\|3148264_3148504_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	8.0e-23	70.1
WP_004190725.1\|3148513_3148828_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
WP_080895642.1\|3148724_3149912_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	2.4e-120	52.2
WP_004151901.1\|3150088_3150979_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004203899.1\|3150978_3151971_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004203898.1\|3151972_3152782_+	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	1.2e-14	33.7
WP_101866900.1\|3152811_3154311_-	histidine ammonia-lyase	A0A1V0S940	Catovirus	2.5e-61	33.6
WP_017900863.1\|3154307_3155102_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	6.6e-29	37.4
3155764:3155780	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3279090 : 3326965

Enterobacteria_phage(57.58%)

capsid,tRNA,transposase,terminase,integrase,plate,tail,portal,head

attL 3310061:3310075|attR 3325773:3325787

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050533957.1\|3279090_3279591_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_044522266.1\|3279708_3280155_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_044522343.1\|3280138_3280930_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_048297282.1\|3281031_3282216_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_032452478.1\|3282247_3282940_-	CTP synthase	NA	NA	NA	NA
WP_023289247.1\|3283085_3283595_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_023289246.1\|3283581_3283938_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_023289245.1\|3283927_3284167_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004213128.1\|3284433_3284685_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_040227680.1\|3284728_3285868_-	phage late control D family protein	B9A7A9	Serratia_phage	9.4e-146	71.0
WP_040227678.1\|3286022_3287195_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	1.0e-158	70.7
WP_004216461.1\|3287194_3287710_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
WP_004131585.1\|3287755_3288073_+	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_032440702.1\|3288072_3288231_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.5e-11	63.3
WP_087827936.1\|3288217_3291193_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	1.8e-220	46.7
WP_040228690.1\|3291208_3291700_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	7.3e-55	62.7
WP_112201682.1\|3292128_3295236_+	DUF4365 domain-containing protein	NA	NA	NA	NA
WP_112201237.1\|3295251_3296283_-\|transposase	IS630-like element ISSpu2 family transposase	NA	NA	NA	NA
WP_040228490.1\|3297353_3298451_-\|tail	tail fiber protein	A0A0M3ULH6	Salmonella_phage	3.2e-10	29.0
WP_040228488.1\|3298450_3298663_-	hypothetical protein	NA	NA	NA	NA
WP_065800056.1\|3300760_3301684_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	5.6e-173	97.4
WP_040228484.1\|3302741_3303665_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	7.6e-53	43.6
WP_040228482.1\|3303666_3304017_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	3.6e-24	60.4
WP_040228480.1\|3304013_3304601_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.7e-61	61.0
WP_040228478.1\|3304597_3305233_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.0e-56	51.4
WP_040228476.1\|3305229_3305697_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	9.1e-47	59.2
WP_052450952.1\|3305697_3305973_-	hypothetical protein	B6SD31	Bacteriophage	6.6e-05	34.1
WP_004213112.1\|3305878_3306208_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_004213111.1\|3306219_3306765_-	lysozyme	Q1I0Z1	Pasteurella_virus	1.3e-31	44.1
WP_004215823.1\|3306761_3307046_-	hypothetical protein	NA	NA	NA	NA
WP_004131559.1\|3307036_3307237_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_004213109.1\|3307236_3307752_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	4.1e-40	49.4
WP_040228473.1\|3307864_3308722_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	3.7e-70	61.3
WP_020324085.1\|3308771_3309806_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	8.1e-96	50.0
WP_038989682.1\|3309817_3310657_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.1e-94	65.9
3310061:3310075	attL	NA	NA	NA	NA
WP_112201684.1\|3310813_3312541_+	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	1.5e-232	68.1
WP_052455057.1\|3312534_3313596_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	3.1e-143	68.4
WP_040228468.1\|3314183_3315710_-	hypothetical protein	NA	NA	NA	NA
WP_040228466.1\|3318352_3319309_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	3.9e-84	53.3
WP_004131528.1\|3319305_3319533_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.9e-05	41.0
WP_040228464.1\|3319541_3320108_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	3.6e-13	32.1
WP_004213098.1\|3320104_3320329_-	hypothetical protein	NA	NA	NA	NA
WP_040228462.1\|3320397_3320670_-	hypothetical protein	NA	NA	NA	NA
WP_040228460.1\|3320685_3321063_-	hypothetical protein	NA	NA	NA	NA
WP_004216643.1\|3321078_3321297_-	hypothetical protein	A0A0M5M1I3	Salmonella_phage	3.6e-06	49.1
WP_020806130.1\|3321317_3321596_-	regulatory protein Cox	Q1JS60	Enterobacteria_phage	6.2e-43	88.9
WP_004213095.1\|3321716_3322016_+	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	6.5e-38	77.8
WP_040228457.1\|3322131_3323115_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	4.9e-151	80.1
WP_017898645.1\|3323378_3324392_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	9.3e-12	33.1
WP_048297280.1\|3324449_3324551_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_137910537.1\|3324550_3324625_+	protein YoaJ	NA	NA	NA	NA
WP_004203733.1\|3324743_3324869_+	hypothetical protein	NA	NA	NA	NA
WP_004203731.1\|3324928_3325192_-	DUF2534 family protein	NA	NA	NA	NA
WP_004203730.1\|3325322_3325961_-	leucine efflux protein LeuE	NA	NA	NA	NA
3325773:3325787	attR	NA	NA	NA	NA
WP_023289231.1\|3326050_3326965_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.2e-71	49.6

DBSCAN-SWA_9

3354091 : 3406334

Klebsiella_phage(48.78%)

holin,capsid,transposase,terminase,integrase,tail,portal,head

attL 3351010:3351024|attR 3407114:3407128

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3351010:3351024	attL	NA	NA	NA	NA
WP_047694554.1\|3354091_3355156_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.7e-14	32.2
WP_112201688.1\|3355580_3357017_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	2.4e-98	53.7
WP_112201689.1\|3357078_3368295_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	50.0
WP_023159867.1\|3368357_3368951_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	2.2e-77	75.6
WP_139828134.1\|3369002_3369200_-	hypothetical protein	NA	NA	NA	NA
WP_112201690.1\|3369391_3370315_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	5.1e-166	92.8
WP_087499133.1\|3370447_3371158_-	NlpC/P60 family protein	Q6UAW4	Klebsiella_phage	9.4e-136	89.8
WP_087499132.1\|3371159_3371915_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	5.1e-124	80.1
WP_017898999.1\|3371911_3372250_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
WP_112201691.1\|3372249_3375585_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.5
WP_071836352.1\|3375584_3375803_-	hypothetical protein	Q6UAW9	Klebsiella_phage	5.4e-34	90.5
WP_014228914.1\|3375817_3376183_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_023328090.1\|3376240_3376702_-	hypothetical protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_017898997.1\|3376733_3377135_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
WP_017880258.1\|3377131_3377521_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_023328092.1\|3377501_3377840_-	hypothetical protein	Q6UAX3	Klebsiella_phage	2.8e-53	90.2
WP_020317538.1\|3377836_3378154_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_063002116.1\|3378134_3378395_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.5e-22	63.9
WP_112201692.1\|3378453_3379740_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	9.8e-216	89.0
WP_014907815.1\|3379817_3380738_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	9.6e-149	88.2
WP_064141880.1\|3380774_3382034_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.4e-222	90.0
WP_017898992.1\|3382033_3382213_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_087499129.1\|3382206_3383928_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	6.5e-191	57.6
WP_012542168.1\|3383927_3384362_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_017898991.1\|3384611_3385043_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.3
WP_014228902.1\|3385039_3385357_-	hypothetical protein	NA	NA	NA	NA
WP_017898990.1\|3385308_3385671_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	3.4e-57	81.7
WP_017898989.1\|3385824_3386046_-	hypothetical protein	NA	NA	NA	NA
WP_017898988.1\|3386152_3386341_-	hypothetical protein	NA	NA	NA	NA
WP_017898986.1\|3387420_3387771_-	hypothetical protein	R9TPM9	Aeromonas_phage	1.8e-10	39.8
WP_023279523.1\|3387767_3388265_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.9e-79	85.8
WP_017880269.1\|3388264_3388480_-\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	87.3
WP_023342896.1\|3389903_3390506_-	hypothetical protein	H9C175	Pectobacterium_phage	2.4e-76	68.1
WP_069197143.1\|3390522_3391554_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.1e-96	49.6
WP_032418038.1\|3391553_3391757_-	hypothetical protein	NA	NA	NA	NA
WP_032418037.1\|3391753_3392146_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	1.0e-11	36.6
WP_077253879.1\|3392186_3392477_-	hypothetical protein	H6WRY6	Salmonella_phage	6.1e-17	56.9
WP_012542186.1\|3392488_3392722_-	DinI family protein	K7PM44	Enterobacteria_phage	1.7e-25	71.1
WP_040231034.1\|3393111_3394209_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	1.8e-53	38.3
WP_040231036.1\|3394201_3396313_-	hypothetical protein	NA	NA	NA	NA
WP_096900011.1\|3396603_3397044_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_047670011.1\|3397057_3397522_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.2e-62	70.9
WP_096900017.1\|3397514_3398519_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	2.1e-32	35.6
WP_017898969.1\|3398578_3399133_-	hypothetical protein	NA	NA	NA	NA
WP_004147982.1\|3399135_3399357_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.2e-28	75.3
WP_004147981.1\|3399627_3399882_+	hypothetical protein	H6WRX4	Salmonella_phage	1.6e-13	54.8
WP_096900013.1\|3400155_3400335_+	hypothetical protein	NA	NA	NA	NA
WP_112201693.1\|3400470_3400689_+	hypothetical protein	NA	NA	NA	NA
WP_063002092.1\|3400698_3400893_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3400935_3401280_+	transcriptional regulator	NA	NA	NA	NA
WP_112201694.1\|3401421_3403560_+	exonuclease	S4TNL0	Salmonella_phage	2.1e-98	43.1
WP_012542206.1\|3403612_3403858_+	excisionase	NA	NA	NA	NA
WP_110228966.1\|3403838_3404966_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.4e-119	58.4
WP_023289166.1\|3405083_3406334_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
3407114:3407128	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3673765 : 3683226

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064158126.1\|3673765_3675487_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	6.4e-13	33.0
WP_049014702.1\|3675526_3676228_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3676581_3676800_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_032455257.1\|3676922_3679202_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.0
WP_002896520.1\|3679232_3679550_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3679875_3680097_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_044521907.1\|3680173_3682114_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.4e-37	40.5
WP_004201357.1\|3682110_3683226_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_11

4167185 : 4213299

uncultured_Caudovirales_phage(28.3%)

holin,tRNA,lysis,terminase,integrase

attL 4166984:4167030|attR 4210369:4210415

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4166984:4167030	attL	NA	NA	NA	NA
WP_104466707.1\|4167185_4167503_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.1e-22	52.0
WP_048336948.1\|4167502_4167742_-	hypothetical protein	K7P7N3	Enterobacteria_phage	3.6e-15	51.9
WP_142673918.1\|4167859_4168609_-	hypothetical protein	NA	NA	NA	NA
WP_112201787.1\|4168611_4170414_-	GDSL family lipase	A0A286S1P0	Klebsiella_phage	2.6e-17	43.5
WP_112201788.1\|4170665_4171547_-	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	7.3e-29	60.2
WP_032454856.1\|4171546_4172320_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	1.1e-76	54.1
WP_112201789.1\|4172316_4173513_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	2.5e-157	72.6
WP_112201790.1\|4173512_4173866_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	8.7e-50	79.5
WP_112201791.1\|4173867_4174521_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	2.4e-61	50.8
WP_142673919.1\|4174743_4175100_+	hypothetical protein	NA	NA	NA	NA
WP_062920896.1\|4175146_4175497_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	5.5e-20	41.6
WP_112201792.1\|4175493_4176522_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.3e-98	54.0
WP_112201793.1\|4176524_4176827_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.6e-26	55.2
WP_023158909.1\|4176827_4177427_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	5.8e-54	58.1
WP_112201794.1\|4177426_4179352_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	7.3e-183	71.3
WP_112202000.1\|4179341_4179494_-	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	2.4e-17	82.0
WP_110225340.1\|4179535_4179955_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	1.0e-41	66.7
WP_021312703.1\|4179958_4180402_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	1.2e-61	80.0
WP_102962067.1\|4180411_4181557_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-166	77.4
WP_004152176.1\|4181560_4182001_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_023312779.1\|4182095_4182482_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	2.8e-49	79.0
WP_021312707.1\|4182481_4182988_-	hypothetical protein	NA	NA	NA	NA
WP_086624362.1\|4182984_4183404_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	4.4e-40	60.7
WP_062920907.1\|4183372_4183654_-	hypothetical protein	NA	NA	NA	NA
WP_112201795.1\|4183693_4184635_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	5.2e-134	74.8
WP_000528476.1\|4184646_4185141_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_112201796.1\|4185144_4186347_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	9.1e-107	54.6
WP_064165524.1\|4186356_4186551_-	hypothetical protein	NA	NA	NA	NA
WP_032428680.1\|4186596_4187145_-	phage Mu F like family protein	A0A0M4REK0	Salmonella_phage	1.0e-49	56.9
WP_112201797.1\|4187200_4188652_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.1e-191	68.8
WP_112201798.1\|4188889_4190290_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	1.2e-187	69.1
WP_112201799.1\|4190240_4191017_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	3.9e-10	46.5
WP_112201800.1\|4191225_4191693_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	4.1e-55	72.3
WP_041165462.1\|4191689_4192187_-	lysozyme	K7P7Q3	Enterobacteria_phage	1.3e-78	84.2
WP_032419911.1\|4192164_4192434_-\|holin	holin	K7P6H9	Enterobacteria_phage	2.1e-32	78.3
WP_112202001.1\|4193346_4194036_-	antiterminator	I6PDF8	Cronobacter_phage	8.1e-60	55.4
WP_004884232.1\|4194035_4194176_-	YlcG family protein	NA	NA	NA	NA
WP_112202002.1\|4194816_4195413_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	9.5e-57	54.3
WP_032430153.1\|4195533_4195803_-	hypothetical protein	H6WRY4	Salmonella_phage	2.4e-36	83.0
WP_112201801.1\|4195849_4196245_-	hypothetical protein	A0A193GYM6	Enterobacter_phage	6.1e-52	80.8
WP_112201802.1\|4197241_4197469_-	hypothetical protein	NA	NA	NA	NA
WP_112201803.1\|4197970_4198222_-	hypothetical protein	NA	NA	NA	NA
WP_112201804.1\|4198218_4198689_-	hypothetical protein	R9TME7	Aeromonas_phage	2.3e-34	56.5
WP_112201805.1\|4198685_4198988_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_112201806.1\|4198987_4200418_-	AAA family ATPase	Q9MCT4	Escherichia_phage	2.2e-184	66.7
WP_112201807.1\|4200407_4201307_-	DNA replication protein	F1C5C3	Cronobacter_phage	7.8e-87	54.5
WP_004141720.1\|4201532_4201853_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	3.8e-36	68.9
WP_040182097.1\|4201892_4202114_-	helix-turn-helix domain-containing protein	Q716D6	Shigella_phage	1.8e-13	55.1
WP_112201808.1\|4202216_4202912_+	helix-turn-helix transcriptional regulator	K7P7I4	Enterobacteria_phage	8.2e-76	62.4
WP_142673920.1\|4202931_4203366_+	hypothetical protein	NA	NA	NA	NA
WP_080922727.1\|4203725_4203941_+	hypothetical protein	B5WZV1	Pseudomonas_phage	8.2e-11	47.1
WP_019704100.1\|4204040_4204235_+	hypothetical protein	NA	NA	NA	NA
WP_112201809.1\|4204323_4205295_+	hypothetical protein	M9P0E1	Enterobacteria_phage	1.4e-65	89.1
WP_112201810.1\|4205302_4205587_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.6e-38	77.7
WP_039108801.1\|4205603_4206350_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	5.3e-65	67.7
WP_064344917.1\|4206346_4206970_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	5.3e-58	60.2
WP_050885292.1\|4206998_4207526_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	9.3e-56	60.4
WP_112201811.1\|4207522_4208293_+	dcm methylase	D5LH17	Escherichia_phage	5.5e-65	51.6
WP_112201812.1\|4208289_4208508_+	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	8.4e-11	47.2
WP_112201813.1\|4208509_4208728_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	1.9e-15	58.6
WP_042934012.1\|4208727_4208967_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	3.9e-09	43.6
WP_004223135.1\|4208979_4209315_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_142673921.1\|4209191_4210355_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	1.1e-202	86.8
WP_072013401.1\|4210424_4210649_-	hypothetical protein	NA	NA	NA	NA
4210369:4210415	attR	NA	NA	NA	NA
WP_004143017.1\|4210787_4211654_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_004143016.1\|4211655_4211868_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004204706.1\|4211913_4213299_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_12

4935894 : 4947295

Enterobacteria_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_112201915.1\|4935894_4939125_+	DUF4145 domain-containing protein	Q6NDX2	Leptospira_phage	2.9e-14	25.7
WP_065800056.1\|4939166_4940090_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	5.6e-173	97.4
WP_112201916.1\|4940194_4940389_+	hypothetical protein	NA	NA	NA	NA
WP_112201917.1\|4940475_4942098_+	type I restriction-modification system subunit M	J7I0U9	Acinetobacter_phage	8.1e-34	29.7
WP_112201918.1\|4942094_4943273_+	restriction endonuclease	E3T4D5	Cafeteria_roenbergensis_virus	2.3e-14	28.1
WP_112201919.1\|4943269_4945060_+	AAA family ATPase	Q2P9X8	Enterobacteria_phage	2.6e-09	29.4
WP_112201920.1\|4945059_4945959_+	hypothetical protein	NA	NA	NA	NA
WP_112201921.1\|4946041_4947295_-	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	7.6e-80	39.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP026369

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP026371

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP026370

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP026368

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection