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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP032671 Listeria monocytogenes strain 52859 chromosome, complete genome 4 crisprs DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,RT,DEDDh,csa3 2 15 7 3

Results visualization

1. NZ_CP032671
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP032671_1 214854-215008 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP032671_2 512599-513183 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP032671_3 566705-568354 Unclear I-A
25 spacers
cas2,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP032671_4 2215442-2216018 Orphan NA
7 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP032671_3 3.10|567319|37|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567319-567355 37 NZ_CP032671.1 730828-730864 0 1.0
NZ_CP032671_3 3.6|567060|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567060-567095 36 NZ_CP032671.1 731630-731665 1 0.972

1. spacer 3.10|567319|37|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to position: 730828-730864, mismatch: 0, identity: 1.0

agtatcgccttcgctaggcgtttcgggcggcgtttcc	CRISPR spacer
agtatcgccttcgctaggcgtttcgggcggcgtttcc	Protospacer
*************************************

2. spacer 3.6|567060|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to position: 731630-731665, mismatch: 1, identity: 0.972

cttcctactttttgacataaaaaataagccgagttg	CRISPR spacer
cttcctactttttgacataaaaaataagccgaattg	Protospacer
********************************.***

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP032671_3 3.2|566800|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 566800-566835 36 DQ003642 Listeria phage A006, complete genome 16672-16707 0 1.0
NZ_CP032671_3 3.3|566865|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 566865-566899 35 MH341453 Listeria phage PSU-VKH-LP041, complete genome 31167-31201 0 1.0
NZ_CP032671_3 3.7|567125|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567125-567160 36 KJ094023 Listeria phage LP-101, complete genome 18341-18376 0 1.0
NZ_CP032671_3 3.16|567710|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567710-567745 36 NC_003216 Listeria phage A118, complete genome 18563-18598 0 1.0
NZ_CP032671_3 3.16|567710|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567710-567745 36 AJ242593 Bacteriophage A118 complete genome 18563-18598 0 1.0
NZ_CP032671_3 3.20|567967|34|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567967-568000 34 NC_003216 Listeria phage A118, complete genome 19172-19205 0 1.0
NZ_CP032671_3 3.20|567967|34|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567967-568000 34 AJ242593 Bacteriophage A118 complete genome 19172-19205 0 1.0
NZ_CP032671_3 3.1|566734|37|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 566734-566770 37 KJ094023 Listeria phage LP-101, complete genome 9186-9222 1 0.973
NZ_CP032671_3 3.6|567060|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567060-567095 36 KJ094023 Listeria phage LP-101, complete genome 17910-17945 1 0.972
NZ_CP032671_3 3.8|567190|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567190-567224 35 MH341452 Listeria phage PSU-VKH-LP040, complete genome 377-411 1 0.971
NZ_CP032671_3 3.8|567190|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567190-567224 35 KP399678 Listeria phage vB_LmoS_293, complete genome 330-364 1 0.971
NZ_CP032671_3 3.1|566734|37|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 566734-566770 37 MT500540 Listeria phage LP-HM00113468, complete genome 35729-35765 2 0.946
NZ_CP032671_3 3.15|567645|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567645-567680 36 MH341453 Listeria phage PSU-VKH-LP041, complete genome 26132-26167 2 0.944
NZ_CP032671_3 3.21|568030|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 568030-568065 36 KJ094022 Listeria phage LP-030-3, complete genome 38302-38337 2 0.944
NZ_CP032671_3 3.8|567190|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567190-567224 35 DQ003637 Listeria phage A500, complete genome 334-368 3 0.914
NZ_CP032671_3 3.8|567190|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567190-567224 35 KJ094022 Listeria phage LP-030-3, complete genome 8756-8790 3 0.914
NZ_CP032671_3 3.22|568095|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 568095-568130 36 MH341453 Listeria phage PSU-VKH-LP041, complete genome 41996-42031 3 0.917
NZ_CP032671_3 3.6|567060|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567060-567095 36 NZ_LR134403 Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence 227438-227473 4 0.889
NZ_CP032671_3 3.24|568226|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 568226-568261 36 FW590615 JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME 3844-3879 4 0.889
NZ_CP032671_3 3.24|568226|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 568226-568261 36 HI504184 Sequence 26 from Patent EP2147092 3844-3879 4 0.889
NZ_CP032671_3 3.24|568226|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 568226-568261 36 AJ417489 bacteriophage U153 int gene for U153 integrase 3844-3879 4 0.889
NZ_CP032671_3 3.22|568095|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 568095-568130 36 KJ094023 Listeria phage LP-101, complete genome 32760-32795 5 0.861
NZ_CP032671_3 3.18|567838|34|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567838-567871 34 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 1764851-1764884 6 0.824
NZ_CP032671_3 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT 568291-568325 35 MN694189 Marine virus AFVG_250M578, complete genome 47879-47913 6 0.829
NZ_CP032671_3 3.11|567385|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567385-567420 36 AP013647 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C72-MedDCM-OCT-S41-C96, *** SEQUENCING IN PROGRESS *** 13305-13340 8 0.778
NZ_CP032671_3 3.24|568226|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 568226-568261 36 NC_019743 Microcoleus sp. PCC 7113 plasmid pMIC7113.08, complete sequence 4997-5032 8 0.778
NZ_CP032671_3 3.3|566865|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 566865-566899 35 NZ_CP013615 Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence 176358-176392 9 0.743
NZ_CP032671_3 3.18|567838|34|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567838-567871 34 NZ_CP038863 Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence 39302-39335 9 0.735
NZ_CP032671_3 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT 568291-568325 35 MK448625 Streptococcus satellite phage Javan738, complete genome 5960-5994 9 0.743
NZ_CP032671_3 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT 568291-568325 35 MK448449 Streptococcus satellite phage Javan356, complete genome 4490-4524 9 0.743
NZ_CP032671_3 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT 568291-568325 35 MK448636 Streptococcus satellite phage Javan749, complete genome 6112-6146 9 0.743
NZ_CP032671_3 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT 568291-568325 35 NZ_CP045037 Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence 34734-34768 9 0.743
NZ_CP032671_3 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT 568291-568325 35 NZ_CP018177 Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence 11325-11359 9 0.743
NZ_CP032671_3 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT 568291-568325 35 NZ_CP018181 Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence 63608-63642 9 0.743
NZ_CP032671_3 3.11|567385|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567385-567420 36 NZ_AP015030 Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence 410342-410377 11 0.694
NZ_CP032671_3 3.11|567385|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT 567385-567420 36 NZ_CP018048 Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence 142304-142339 11 0.694

1. spacer 3.2|566800|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

attacagtacaagcaagggttattgagttaaatatt	CRISPR spacer
attacagtacaagcaagggttattgagttaaatatt	Protospacer
************************************

2. spacer 3.3|566865|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 0, identity: 1.0

attaatgataagagcggaaagaaaactttcaaggg	CRISPR spacer
attaatgataagagcggaaagaaaactttcaaggg	Protospacer
***********************************

3. spacer 3.7|567125|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

aagttcaaaacctcccacacccgctatgaataaatt	CRISPR spacer
aagttcaaaacctcccacacccgctatgaataaatt	Protospacer
************************************

4. spacer 3.16|567710|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

5. spacer 3.16|567710|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 3.20|567967|34|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

7. spacer 3.20|567967|34|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

8. spacer 3.1|566734|37|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

caatgcttaaaccgagagcatcaaattgttcccatgc	CRISPR spacer
caatgcttaaacctagagcatcaaattgttcccatgc	Protospacer
************* ***********************

9. spacer 3.6|567060|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

cttcctactttttgacataaaaaataagccgagttg	CRISPR spacer
cttcctactttttgacataaaaaataagccgaattg	Protospacer
********************************.***

10. spacer 3.8|567190|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.971

acgagtatcagcgctaaaagagattgttaagcgcc	CRISPR spacer
acgggtatcagcgctaaaagagattgttaagcgcc	Protospacer
***.*******************************

11. spacer 3.8|567190|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 1, identity: 0.971

acgagtatcagcgctaaaagagattgttaagcgcc	CRISPR spacer
acgggtatcagcgctaaaagagattgttaagcgcc	Protospacer
***.*******************************

12. spacer 3.1|566734|37|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 2, identity: 0.946

caatgcttaaaccgagagcatcaaattgttcccatgc	CRISPR spacer
caatgcttaacccaagagcatcaaattgttcccatgc	Protospacer
********** **.***********************

13. spacer 3.15|567645|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.944

gtccacatcgacaataaaaaacacattgtatcactt	CRISPR spacer
gtccacattgacaacaaaaaacacattgtatcactt	Protospacer
********.*****.*********************

14. spacer 3.21|568030|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.944

ttgttcgacggcttagacaaccatcacgcttcttta	CRISPR spacer
cttttcgacggcttagacaaccatcacgcttcttta	Protospacer
.* *********************************

15. spacer 3.8|567190|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 3, identity: 0.914

acgagtatcagcgctaaaagagattgttaagcgcc	CRISPR spacer
acgagtatcagcattaaaagagattgttaagcgtc	Protospacer
************..*******************.*

16. spacer 3.8|567190|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 3, identity: 0.914

acgagtatcagcgctaaaagagattgttaagcgcc	CRISPR spacer
acgagtatcagcattaaaagagattgttaagcgtc	Protospacer
************..*******************.*

17. spacer 3.22|568095|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.917

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
tataaaatattgtccaatgtgtggaaggagtttggg	Protospacer
************.********.*************.

18. spacer 3.6|567060|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 4, identity: 0.889

cttcctactttttgacataaaaaataagccgagttg	CRISPR spacer
cttcctactttttgacataaaaaataagccttgctc	Protospacer
******************************  *.* 

19. spacer 3.24|568226|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 4, identity: 0.889

gtgtaattcttaattccgtattgattcgctagtttt	CRISPR spacer
ttataatccttaattccgtattgatttgctagtttt	Protospacer
 *.****.******************.*********

20. spacer 3.24|568226|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 4, identity: 0.889

gtgtaattcttaattccgtattgattcgctagtttt	CRISPR spacer
ttataatccttaattccgtattgatttgctagtttt	Protospacer
 *.****.******************.*********

21. spacer 3.24|568226|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 4, identity: 0.889

gtgtaattcttaattccgtattgattcgctagtttt	CRISPR spacer
ttataatccttaattccgtattgatttgctagtttt	Protospacer
 *.****.******************.*********

22. spacer 3.22|568095|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.861

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
cattgaattttgcccaatgtgcggaaggagcttgga	Protospacer
.** .*** *********************.*****

23. spacer 3.18|567838|34|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

agaaaaaaaacatctttccaatttgttgttttgc	CRISPR spacer
agcaaaaaaacatctttcctatttgttttatcac	Protospacer
** **************** ******* * *..*

24. spacer 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

25. spacer 3.11|567385|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to AP013647 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C72-MedDCM-OCT-S41-C96, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.778

actttagagaaagaaaaacaagaaaaag----taaaactg	CRISPR spacer
tctttagaaaaagaaatacaagaaaaaagatttaaa----	Protospacer
 *******.******* **********.    ****    

26. spacer 3.24|568226|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to NC_019743 (Microcoleus sp. PCC 7113 plasmid pMIC7113.08, complete sequence) position: , mismatch: 8, identity: 0.778

gtgtaattcttaattccgtattgattcgctagtttt---	CRISPR spacer
gtgtaattcttactgccgtattgatt---taactctgaa	Protospacer
************ * ***********   **..*.*   

27. spacer 3.3|566865|35|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 9, identity: 0.743

attaatgataagagcggaaagaaaactttcaaggg	CRISPR spacer
gaaattaaaaagagagcaaagaaaactttcaagga	Protospacer
.  * *.* ***** * *****************.

28. spacer 3.18|567838|34|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaaaaacatctttccaatttgttgttttgc-----	CRISPR spacer
aagaaaaaaacatatttccaatt-----ttttccaaaaa	Protospacer
*..********** *********     **** *     

29. spacer 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*    

30. spacer 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*    

31. spacer 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*    

32. spacer 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *  

33. spacer 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *  

34. spacer 3.25|568291|35|NZ_CP032671|CRISPRCasFinder,CRT matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *  

35. spacer 3.11|567385|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 11, identity: 0.694

actttagagaaagaaaaacaagaaaaagtaaaactg	CRISPR spacer
gaaaaagagaaagagaaacaagagaaagtaacaagc	Protospacer
.    *********.********.******* *   

36. spacer 3.11|567385|36|NZ_CP032671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018048 (Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.694

actttagagaaagaaaaacaagaaaaagtaaaactg	CRISPR spacer
gaaaaagagaaagagaaacaagagaaagtaacaagc	Protospacer
.    *********.********.******* *   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 132197 : 138724 10 Listeria_phage(33.33%) tail NA
DBSCAN-SWA_2 700319 : 758410 70 Listeria_phage(60.53%) capsid,terminase,tail,portal,head,holin,protease,integrase,transposase attL 693025:693042|attR 756158:756175
DBSCAN-SWA_3 1178493 : 1185915 8 Hokovirus(33.33%) NA NA
DBSCAN-SWA_4 1323374 : 1380207 57 Bacillus_virus(16.67%) tRNA,protease NA
DBSCAN-SWA_5 1762917 : 1810369 68 Listeria_phage(95.08%) terminase,plate,head,holin,integrase attL 1762736:1762751|attR 1810531:1810546
DBSCAN-SWA_6 1943802 : 1952088 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 2623869 : 2631711 7 Streptococcus_phage(50.0%) NA NA
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP032671.1|WP_031641918.1|705024_705381_+|MerR-family-transcriptional-regulator 705024_705381_+ 118 aa aa NA NA NA 700319-758410 yes
NZ_CP032671.1|WP_031641923.1|702260_702761_-|hypothetical-protein 702260_702761_- 166 aa aa NA NA NA 700319-758410 yes
NZ_CP032671.1|WP_150969098.1|747061_747346_-|hypothetical-protein 747061_747346_- 94 aa aa NA NA NA 700319-758410 yes