CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044360	Bacillus amyloliquefaciens strain V167 chromosome, complete genome	1 crisprs	csa3,DinG,cas3,DEDDh	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044360_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044360_1

713765-714060

Orphan

Consensus_repeat	Method
GACCAACTGAGCTACAGGAGCTA	CRISPRCasFinder

5 spacers

DinG

The CRISPR arrays of NZ_CP044360_1

>merge|NZ_CP044360|1|713765-714060|CRISPRCasFinder
ACCAACTGGAGCTACAGGAGCTACTGGACCAATCCGAAGCCACAGGAGCTACAGGAGCTACTGGACCAACTGGGATTACAGAGATATCGGATCAACTGGAGCTACAGGAGCTACCAATAATCCAATACATGGGAGCTACCGGCAAATAACTGGCGACGGGAATCATTTAACCAACTGAGCTACAGGAGATACCTCGAGCCAATACCAACTATGCGACGGGGAGATACCGGACCAACTGAGCTACAGGAGCTAATACTGCCACTAACTATGATGGAGATACCGACCAACTGGAGCTA

>NZ_CP044360|1|1|713765-714060|CRISPRCasFinder
ACCAACTGGAGCTACAGGAGCTA	CTGGACCAATCCGA
AGCCACAGGAGCTACAGGAGCTA	CTGGACCAACTGGGATTACAGAGATATCGG
ATCAACTGGAGCTACAGGAGCTA	CCAATAATCCAATACATGGGAGCTACCGGCAAATAACTGGCGACGGGAATCATTT
AACCAACTGAGCTACAGGAGATA	CCTCGAGCCAATACCAACTATGCGACGGGGAGATACCG
GACCAACTGAGCTACAGGAGCTA	ATACTGCCACTAACTATGATG
GAGATACCGACCAACTGGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044360.1\|WP_012117053.1\|706500_707520_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP044360.1\|WP_003155650.1\|708189_708537_+\|general-stress-protein	unknown	unknown	gnl\|CDD\|378584
NZ_CP044360.1\|WP_150978874.1\|714242_714614_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044360.1\|WP_007408959.1\|701843_703028_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341027
NZ_CP044360.1\|WP_012117051.1\|703071_704628_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP044360.1\|WP_012117062.1\|722531_723326_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293807
NZ_CP044360.1\|WP_007408966.1\|710090_711527_+\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP044360.1\|WP_123912793.1\|714707_715991_+\|NTTRR-F1-domain	unknown	unknown	gnl\|CDD\|189968
NZ_CP044360.1\|WP_012117060.1\|719333_720014_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP044360.1\|WP_012117058.1\|716170_717550_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274746
NZ_CP044360.1\|WP_007408485.1\|721181_722480_+\|citrate-transporter	unknown	unknown	gnl\|CDD\|162036
NZ_CP044360.1\|WP_012117052.1\|704798_705929_+\|DEAD/DEAH-box-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|223587
NZ_CP044360.1\|WP_012117063.1\|723449_724541_+\|nitric-oxide-synthase-oxygenase	unknown	unknown	gnl\|CDD\|376957
NZ_CP044360.1\|WP_012117064.1\|724534_724807_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|237710
NZ_CP044360.1\|WP_012117059.1\|717732_719337_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP044360.1\|WP_150978873.1\|712413_713214_+\|NTTRR-F1-domain	unknown	unknown	unknown
NZ_CP044360.1\|WP_123912791.1\|712027_712321_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044360.1\|WP_012117061.1\|720026_720989_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225722
NZ_CP044360.1\|WP_012117054.1\|708700_709966_+\|pectate-lyase	unknown	unknown	gnl\|CDD\|226384
NZ_CP044360.1\|WP_007610002.1\|707648_707999_-\|DUF3212-domain-containing-protein	unknown	unknown	gnl\|CDD\|288356

Protein	Function_ID	Function_description	E-value
NZ_CP044360.1\|WP_012117053.1\|706500_707520_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	0
NZ_CP044360.1\|WP_003155650.1\|708189_708537_+\|general-stress-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	1.36131e-33
NZ_CP044360.1\|WP_007408485.1\|721181_722480_+\|citrate-transporter	gnl\|CDD\|162036	TIGR00784, Mg2+/citrate_complex_secondary_transporter, citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP044360.1\|WP_007408959.1\|701843_703028_+\|MFS-transporter	gnl\|CDD\|341027	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis multidrug efflux protein YfmO, bacillibactin exporter YmfD/YmfE, uncharacterized MFS-type transporter YvmA, and similar proteins. YfmO acts to efflux copper or a copper complex, and could contribute to copper resistance. YmfD/YmfE is involved in secretion of bacillibactin. The YfmO-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.82425e-93
NZ_CP044360.1\|WP_012117051.1\|703071_704628_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP044360.1\|WP_012117062.1\|722531_723326_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	7.30821e-77
NZ_CP044360.1\|WP_007408966.1\|710090_711527_+\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
NZ_CP044360.1\|WP_012117060.1\|719333_720014_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	3.18253e-91
NZ_CP044360.1\|WP_012117058.1\|716170_717550_+\|hypothetical-protein	gnl\|CDD\|274746	TIGR03721, exospore_TM, BclB C-terminal domain. This domain occurs as the C-terminal region in a number of proteins that have extensive collagen-like triple helix repeat regions. Member domains are predicted by TmHMM to have four or five transmembrane helices. Members are found mostly in the Firmicutes, but also in Acanthamoeba polyphaga mimivirus. Members include spore surface glycoprotein BclB from Bacillus anthracis, a protein of the exosporium. The exosporium is an additional outermost spore layer, lacking in B. subtilis and most other spore formers, consisting of a basal layer and, above it, a nap of fine filaments.	8.84752e-40
NZ_CP044360.1\|WP_012117052.1\|704798_705929_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	4.81119e-108
NZ_CP044360.1\|WP_012117063.1\|723449_724541_+\|nitric-oxide-synthase-oxygenase	gnl\|CDD\|376957	pfam02898, NO_synthase, Nitric oxide synthase, oxygenase domain.	0
NZ_CP044360.1\|WP_012117064.1\|724534_724807_-\|acylphosphatase	gnl\|CDD\|237710	PRK14420, PRK14420, acylphosphatase; Provisional.	6.20043e-54
NZ_CP044360.1\|WP_012117059.1\|717732_719337_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	1.02844e-157
NZ_CP044360.1\|WP_012117054.1\|708700_709966_+\|pectate-lyase	gnl\|CDD\|226384	COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism].	1.04902e-90
NZ_CP044360.1\|WP_012117061.1\|720026_720989_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	1.8771e-83
NZ_CP044360.1\|WP_007610002.1\|707648_707999_-\|DUF3212-domain-containing-protein	gnl\|CDD\|288356	pfam11486, DUF3212, Protein of unknown function (DUF3212). Members in this family of proteins are annotated as YfmB however currently no function for this protein is known.	2.69947e-47
NZ_CP044360.1\|WP_123912793.1\|714707_715991_+\|NTTRR-F1-domain	gnl\|CDD\|189968	pfam01391, Collagen, Collagen triple helix repeat (20 copies). Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.	1.00112e-07

>NZ_CP044360.1|WP_150978873.1|712413_713214_+|NTTRR-F1-domain
MMKGGYRLAIQNLINNGSFESGDLTGWSGVNASIVSAFAHTGAFSAQFAGGITSASLSQTVPVSPQQSFQLFISLGKIGTIANPEINLRVLYLDASNAVVGTGLNINVTIGNMPNTIFDTWTEVYQTTTAAPAAAVQAQILISKTAGSSNTPVVLIDDVAFVEVTGITGATGPTGATGATGSTGATGATGPTSYRRYHQLGLLELPGPTGATEIPANWGYGRYRANWSDGSYHQLGHRAYRTNPDTGATGQSIWSHWTNWSYRRYQ
>NZ_CP044360.1|WP_123912791.1|712027_712321_+|hypothetical-protein
MIKVDSTVQLNISHEPLSPDFSLKLILTLKRDGITVSTETLELNLFYSGGQSLIIPLTFVDQAPSAGTITYDVVLTVAGSVNVTGVNVTNRAINMIG
>NZ_CP044360.1|WP_007408966.1|710090_711527_+|anion-permease
MASEKDAKKQQAVKIIPLLITVAVGLIIWFIPAPSGLEPKAWHLFAIFVATIIGFISKPLPMGAIAIFALAVTALTGTLSIENTLSGFGNKTIWLIVIAFFISRGFIKTGLGARISYVFVQRFGKKTLGLSYSLLFSDLILSPAIPSNTARAGGIIFPIIRSLSETFGSTPADGTERKIGAFLLKTGFQGNLITSAMFLTAMAANPLIAKLAHDVAGVDITWTSWAIAAIVPGLASLIITPLVIYKLYPPEIKETPDAAKIATEKLKEMGPFKKSELSMVIVFLLVLALWIFGGSLNIDATTTALIGLSVLLLSQVLTWEDIKKEQGAWDTLTWFAALVMLANFLNELGMVSWFSNMMKSSVSGFSWIVAFMILIVVYYYTHYFFASATAHISAMYAAFLAVIVAAGAPPLLAALSLAFFSNLFGSTTHYGSGAAPVFFGAGYISQSKWWSIGFILSIVHIVTWLVIGGLWWKVLGLW
>NZ_CP044360.1|WP_012117054.1|708700_709966_+|pectate-lyase
MKKMLFMLAVCLCMIPADVYAADLGRQTLGTNDGWGAASGGTTGGAKASSSNVYTVSNRQQLVSALGGSANSTPKIIYIQGTINMNTDDRNKTLGFNDYKDPAYDPNAYLKAYDPDKWGKKAPSGTQEDARQRSQKNQKARVVIDIPSNTTIIGSGSNAKVTGGSFNIKNGVDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSEYDNITINGATHIWIDHCTFNDGSNPDSGFPYYYGRKYQHHDGQTDIANGANYITLSYNKYHDHDKGSVIGNSDSKTSDEGKLKVTLHHNYYQNIVQRAPRVRYGQVHIYNNFYAGSKSAAYPFSYAWGAGHASKIYAQNNVFEVPGLAADKVISVFSGGKALHEDGTLLNGAAINASAANGLSQSVGWTPSLHGSIGSSSNVKSDVISKAGSGILK
>NZ_CP044360.1|WP_003155650.1|708189_708537_+|general-stress-protein
MKPVVREYTNDQKLMQDVKELQQLGVAKEDVYVLSHDDDRTDRLADNTDVNTIGAKETGIKHAVGNMFNKKGDELRNKIHEIGFSEEEASQFEKRLDEGKVLLFVTDNEKVKSWA
>NZ_CP044360.1|WP_007610002.1|707648_707999_-|DUF3212-domain-containing-protein
MVPIHYFSPEQRFNAWVVSDLVKQVFRRHTRCPDGIKELTAFAEDTFHINIDFVFSIIINIGDIESVLPKEIENRLGSYLTALQPVVTADMLHSSKTNAYEYLEHEKNTDVYRLFY
>NZ_CP044360.1|WP_012117053.1|706500_707520_-|NADP-dependent-oxidoreductase
MPNHQQQIQLARRPKGVPAHDDFRFETIAVPEPKDGEVLVKTSYVSVDPYMRGRMQDTKSYVEPFALDEAITGGVIAEVLTDGDKLKKGDVVIGNLAWQEYSAVNESALRKLDTDIAPAQAYLGILGMTGLTAYFGLLDIGRPKKGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIAYLKEELQFDEAINYKTADDIQKALEQACPDGVDVYFDNVGGPISDAVINLLNEFARISVCGAISSYNTESEEEDMGPRVQPKLIKTKALMQGFIVSDYADRFSEGAKQLAEWLKDGKLHYEETITEGFSNIPDAFLGLFKGENKGKQIIKVSDPS
>NZ_CP044360.1|WP_012117052.1|704798_705929_+|DEAD/DEAH-box-helicase
MTQTWPFLQHTQPFIAENWEASGFQEPTVIQEKAAQVIMEGKDVIAESPTGTGKTLAYTLPVLERINPEQKHPQVIILAPSRELVMQIFQVIQDWIKGSDLRALSLIGGANVKKQVEKLKNKPHIIAGTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTQEHRETMKKIIKTTLKDRQLLSFSATLQPETEQVLNTIAHEPAVLKVKRNTAEKARVTHQYLVCDQRDKVKLLQKLSRLNGMQALVFVRDIGNLSVYAEKLAYHHVDLGILHGEAKKMERAKILSAFERGEFPLLLATDIAARGLDIDDLPYVIHADIPNEDGYIHRSGRTGRAGKEGTVLSLVTPMEESKLKKMAKSLGIALKEAVYSGGKLSEK
>NZ_CP044360.1|WP_012117051.1|703071_704628_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MSILSVKDLSHGFGDRALFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKVEWAKNVRVGYLDQHTVLEKGKTIRDVLKDAFHYLFAMEEEMNEIYNKMGEADPDELEQLLEDVGVIQDALTNNDFYVIDSKVEEIARGLGLQDVGLDRDVTDLSGGQRTKVLLAKLLLEKPEILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHDIPFLNSVINLIYHVENQELTRYVGDYHQFMEVYEVKKQQLEAAYKKQQQEVAELKDFVARNKARVSTRNMAMSRQKKLDKMDMIELAAEKPKPEFHFKPARTSGKLIFETKDLVIGYDTPLSRPLNLRMERGQKVALYGANGIGKTTLLKSLLGEIQPLEGTVERGEHQYTGYFEQEVKETNNNTCIEEVWSEFPSFTQYEIRAALAKCGLTTKHIESRVSVLSGGEKAKVRLCKLINSETNLLVLDEPTNHLDVDAKEELKRALKEYKGSILLISHEPEFYMDIATETWNCESWTTKVL
>NZ_CP044360.1|WP_007408959.1|701843_703028_+|MFS-transporter
MDTSSQQKTGLFSQPKAVWAVAFACVISFMGIGLVDPILPAIAAQLHASPSEVSLLFTSYLLVTGFMMFFSGAISSRIGAKWTLLLGLIFIIVFAALGGSSSSIAQLVGYRGGWGLGNALFISTALAVIVGVSVGGSAKAIILYEAALGLGISVGPLAGGELGSISWRAPFFGVSVLMFIALCAISLMLPKLPKPAKRVGVFDAMKALKYKGLLTMAVSAFLYNFGFFILLAYSPFVLDLDEHGLGYVFFGWGLLLAITSVFTAPLVHKALGTVGSLVVLFIAFAVILIVMGIWTDHQTLIITCIVVAGAVLGMVNTIMTTAVMGSAPVERSIASSAYSSVRFIGGALAPWIAGMLSEHFTASTPYTVGGIVVFVGMLVLLMGRKHLAGIKAGH
>NZ_CP044360.1|WP_150978874.1|714242_714614_+|hypothetical-protein
MIPLDGTPTSVLTATITAVATQLVKIDTTIQLNITLNPLTPDFSLVLSLDFERNGIIISTETLELNLFYSAGQSIIIPHTFVDQVPASGITVYNAVLTVGNTNNVTQVDITNRALNATSFPLP
>NZ_CP044360.1|WP_123912793.1|714707_715991_+|NTTRR-F1-domain
MKTRIQERGSELAIDNLIVNGGFESGDLNGWDVANAAVNSIFAHSGTYSAQFLIETNVASLSQIVPVTVGQAYHFQVSLGTIGTASNPQVNLQILYLNSLGEPIATGLDAAITIGHLPNVIFNTWTEVYQTTAVVPDGVTDAQIMISKASVNTNTTILIDDVSLLQIIVNSGPTGSTGSTGPTGPTGRTGTTGVTGSTGAMGVTGSTGVTGTTGPTGATGITGPTGRTGTTGVTGSTGATGVTGTTGATGITGPTGRTGTTGVTGSTGATGVTGTTGATGVTGVTGVTGPTASTPALLFTRTNGPLTVYPPLNTEVPVAALEIPVNTLQNVKLDYSVSVDVTSTANSNFVFEIRLYRGAVQIHTRLLSRSVISATTQRFGVADTTVDTAPTAGTNTYQLRIIFTTANNLTTATALNIDFNSISFPTT
>NZ_CP044360.1|WP_012117058.1|716170_717550_+|hypothetical-protein
MRKGDTWYNRYDSWDYDCRNSNECCCHFQHKRRNQRRSYQNRAHCCEGFCCENSCCHERWCPCCHPNHFHVRGFTGATGCTGATGLTGATGLTGATGFTGATGFTGATGFTGATGFTGATGSTGITGVTGDPGATGATGATGITGATGVTGVTGITGTTGATGVTGVTGSTGVTGATGVTGVTGATGITGATGLTGATGVTGSTGVTGVTGDTGATGITGATGLTGVTGVTGSTGATGITGATGDPGATGVTGATGVTGATGATGVTGSTGEIGATGVTGVTGVTGAGAIIPYASGLPTAVTTIAGGLIGTVSLVGFGNSVTGVNVGGGGAIDLTGAGGTLLNFAFSAPRSGTITSIAAYFSTTAALSLVGSTVTITAQLYSSTVPNNTFTPIPGASVTLAPPLTGILSIGSISNGITTGLNIAVTPQTRLLMVFSATATGLSLINTVAGYASAGVTIS
>NZ_CP044360.1|WP_012117059.1|717732_719337_+|sensor-histidine-kinase
MLEAKRFCVSLQMKIAGLIAALLILVIGTLTVIFAFQQLKEGQKQAEQLAVQTAKTISYMPPVKEAFRLADQEAFTKLDVIEQMKEQAGAHAVYITDQKGHVAFHSARSSIPKENQNLQNKTVMFGGSPVSDGMKAVRGSAPVILEEKNHNEVVGTVTVEFLQDEIEKDMKAHLRHLGYFACLVFLIGIGGAAALAKSIRKDTLGLEPHEIAALYRERNAMLLAMKEGIIAVNKEGAVTMMNLSAAGMLNLPEPMIGRHIKEIMPGANLMPVLAGGELPPNVEVRAGDKVFILNVKEMKQTGQVYGAVISFREKTELKKLINKLTEMKKYSEDLRAQTHEFSNKLYAILGLLELGEYNEAIELIKEEYAIQNEQHEILFQNIHSQRVQAILLGKMGKASEKKVKLSIDENSFLESLPEHVGSSQLITIIGNLIDNAFEAVAEKEKKEVAFFMTDIGRDIVIEVADSGDGVPQEKTETIFEKGYSSKGTRRGYGLANLKEAVSELQGSIEISQQKSGGAVFTVFIPKETPKGESV
>NZ_CP044360.1|WP_012117060.1|719333_720014_+|response-regulator
MINIAIAEDDFRIAQIHEKFIEHLDGFNVIGKAINAKDTISLLEKRQPDLLLLDIYMPDELGTDLLPLIRGRFPSVDIIIITASAETRLLQEALRSGVSHYVIKPVSAHKFTEVLLQYREKREWLHSQPELSQSVIDMFFGSGQKEQKQLNDLPTGINSITLQKIKNALREAQKGMTAEELGEKMGASRTTARRYAEFLVSQEEALAELEYGIIGRPERKYYLAHE
>NZ_CP044360.1|WP_012117061.1|720026_720989_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKRLGVLLVMLAALVSFDGRQMAGIRSAEGPVEIVVPAAPQGGWDVTAKALQSVIERKQILGRPVKIVYKPGGGGDSGWKYVNERKTDVISMNSSLLLSNEILGQSRLKAADFTPLAIIAKEWQTVALPKDSKIKSGKRLLGDIKAHPGGIKIGFAPGLGNDDQLSFARAAEMAGISPFDIRFFQYGSSNEVIEALISHEIDAASMTISEARDAYRKGKITLAAVTSDKRLSGFSDVPTWKEQGVPFVFAHWRGIMGPKDMTEGEIAYWDQALKQITSSAEWKQMLKKRDWESFYKNSSGAKRFLEEQTEFYKEMMSSEK
>NZ_CP044360.1|WP_007408485.1|721181_722480_+|citrate-transporter
MLAILGFLMMLVFMVLIMTKRLSVLTALVLTPIVFALFAGFSFNRVGEMMISGIEQVAPIAVMIMFAILYFGIMIDTGLFDPMVSRILKLVKGDPLKIVVGTAVLTMLVALDGDGSTTYMITTSAMLPLYIMLGIRPIILAGIAGVGMGIMNTIPWGGATPRAASALGVDPAELTGPMLPVIASGMVCMIVVAYVLGRMERKRLGVIELKQPSHTNETAAAAEDEWRRPKLWWFNLLLTLSLVGFLVSGKVNLTVLFIIAFCIALIVNYPKLNDQRERISAHSSNVLAIGSMIFAAGVFTGILTGTKMVDEMAISLVSLIPEQMGGFIPAIVALTSGIFTFLMPNDAYFYGVLPILSETAVAYGVDKVEIARASIIGQPIHMLSPLVPSTHLLVGLAGVTIDEHQKFAMKWAVLAVIVMTAFALIIGAITIF
>NZ_CP044360.1|WP_012117062.1|722531_723326_+|MBL-fold-metallo-hydrolase
MSDPFMPLFSVRSGAGFKAADGVYGLTVQIANVYFIENPSAPREIILVDAGMPQSAEMITEEMKRRFKEGYQLKAVILTHGHFDHVGAIEELLEFWDVPVYIHEKELPYVTGKADYPPARPDAKKGLVAKLSPLFPRHTIRIPSVQALPSDGTVPFLEEWRWVHTPGHTPGHISLFRDKDRVLLAGDAVITVEQESLADVVIQKQELHGPPAYFTADTQTAAASVQKLAELEPEALLTGHGIPMTGKNYREDLLTLAEKLHSVL
>NZ_CP044360.1|WP_012117063.1|723449_724541_+|nitric-oxide-synthase-oxygenase
MKHTEILWDEAKDFIDVCYQELGMESQINARLHAIKDEIDRTGSYVHTAEELEHGAKMAWRNSNRCIGRLFWQSLNVIDRRGVNTKEEVRDALFEHIEIATNGGKIKPTITIFPPEKNGEKQVEIWNHQLIRYAGYETEKGRVGDPASYELTAVCEKLGWRGKRTDFDILPLLFRMKGDGQPVWYDLPQTLVKEVPITHPDIEEFADLNLRWYGVPIIADMRLEIGGLSYNAAPFNGWYMGTEIGARNLADEKRYDMLKKAAAVMGISASLNTDLWKDQVLVELNKAVLYSYKKHGVSIVDHHTAANQFKRFEEQEQDAGRKLTGDWTWLIPPISPASTHIFHKSYDNTIVKPNYYYQDKPYQ
>NZ_CP044360.1|WP_012117064.1|724534_724807_-|acylphosphatase
MLQYHMIADGRVQGVGFRYFVQMEADRHKVAGWVKNRDDGRVEILAEGPEESLKQFAEAVRKGSPFSNVTGVTIEESHRLKGYRTFSISY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

610058 : 619948

Synechococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007408896.1\|610058_611351_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.5e-19	27.3
WP_012116996.1\|611426_612146_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3G7P8	Synechococcus_phage	5.7e-48	44.7
WP_003155758.1\|612145_612400_+	phosphoribosylformylglycinamidine synthase subunit PurS	M4QPE7	Synechococcus_phage	4.7e-05	33.3
WP_007408898.1\|612396_613080_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_012116997.1\|613063_615292_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.5e-158	40.7
WP_007408900.1\|615267_616698_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.2e-54	32.7
WP_012116998.1\|616788_617829_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	4.8e-64	41.4
WP_012116999.1\|617825_618413_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.0e-26	38.8
WP_012117000.1\|618409_619948_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.7e-78	50.8

DBSCAN-SWA_2

1162623 : 1174721

uncultured_Caudovirales_phage(42.86%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087920760.1\|1162623_1163760_+	tetratricopeptide repeat protein	A0A1P8CWN8	Bacillus_phage	1.3e-94	47.9
WP_012117358.1\|1163749_1163884_+	PhrA family phosphatase inhibitor	NA	NA	NA	NA
WP_003154880.1\|1164026_1164980_+	LysM peptidoglycan-binding domain-containing protein	A0A218KC88	Bacillus_phage	1.1e-62	69.3
WP_007610770.1\|1165017_1165395_-	PH domain-containing protein	A5GYQ0	Lactococcus_phage	1.5e-15	41.4
WP_012117359.1\|1165505_1166111_+	hypothetical protein	A0A0Y0AJU6	Bacillus_phage	8.8e-42	47.3
WP_076423948.1\|1166100_1166322_+	hypothetical protein	NA	NA	NA	NA
WP_007610775.1\|1166229_1166820_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	3.0e-39	51.7
WP_003154871.1\|1166968_1167307_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	8.4e-18	45.8
WP_007407285.1\|1167497_1167677_+	hypothetical protein	NA	NA	NA	NA
WP_012117361.1\|1168397_1169198_+	ATP-binding protein	A6XMI1	Bacillus_virus	1.0e-58	45.5
WP_007407281.1\|1169462_1169804_+	hypothetical protein	NA	NA	NA	NA
WP_007407280.1\|1169793_1169997_+	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	1.9e-12	50.0
WP_012117362.1\|1170110_1170623_+	sigma-70 family RNA polymerase sigma factor	A0A0K2CNQ1	Brevibacillus_phage	2.9e-22	44.6
WP_077411063.1\|1171365_1171833_+	hypothetical protein	A0A1P8CWR7	Bacillus_phage	2.6e-33	47.1
WP_012117365.1\|1171845_1172217_+	hypothetical protein	NA	NA	NA	NA
WP_012117366.1\|1172221_1172419_+	XkdX family protein	A0A2H4JAA1	uncultured_Caudovirales_phage	2.5e-14	63.6
WP_012117367.1\|1172475_1173237_+	hypothetical protein	NA	NA	NA	NA
WP_003154815.1\|1173288_1173552_+	protein xhlA	A0A2H4JD40	uncultured_Caudovirales_phage	8.8e-23	63.1
WP_003154813.1\|1173565_1173829_+\|holin	phage holin	A0A2H4J6M0	uncultured_Caudovirales_phage	2.3e-23	65.5
WP_007407257.1\|1173842_1174721_+	LysM peptidoglycan-binding domain-containing protein	Q9ZXD7	Bacillus_phage	3.7e-81	60.5

DBSCAN-SWA_3

1728762 : 1734976

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003154061.1\|1728762_1729155_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	3.8e-30	59.1
WP_007611605.1\|1729114_1731217_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	U5PY35	Bacillus_phage	0.0e+00	85.7
WP_012117608.1\|1731234_1732224_+	class 1b ribonucleoside-diphosphate reductase subunit beta	F8WQ21	Bacillus_phage	1.1e-155	83.0
WP_012117609.1\|1732272_1732893_+	hypothetical protein	A0A127AYS1	Bacillus_phage	2.1e-46	47.9
WP_012117610.1\|1732942_1733701_-	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	4.8e-53	50.4
WP_007410369.1\|1733734_1733959_-	hypothetical protein	NA	NA	NA	NA
WP_015417523.1\|1734007_1734976_+	stage V sporulation protein K	G3MAX6	Bacillus_virus	8.0e-53	40.9

DBSCAN-SWA_4

2178262 : 2184516

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007409428.1\|2178262_2178856_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.6e-14	36.6
WP_007409427.1\|2178845_2179601_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.9e-10	25.7
WP_003153376.1\|2179808_2179898_+	YjcZ family sporulation protein	NA	NA	NA	NA
WP_012117889.1\|2179986_2180508_+	DUF309 domain-containing protein	NA	NA	NA	NA
WP_003153374.1\|2180452_2180668_+	hypothetical protein	NA	NA	NA	NA
WP_003153373.1\|2180573_2180948_-	GNAT family N-acetyltransferase RibT	NA	NA	NA	NA
WP_003153372.1\|2181064_2181529_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.2e-43	59.3
WP_003153371.1\|2181561_2182758_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.1e-116	54.9
WP_012117890.1\|2182772_2183420_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.4e-39	43.8
WP_012117891.1\|2183400_2184516_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.6e-55	36.6

DBSCAN-SWA_5

3558502 : 3610506

Bacillus_phage(40.0%)

lysis,holin,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012118714.1\|3558502_3559438_-	sensor histidine kinase	W8CYF6	Bacillus_phage	8.3e-23	28.5
WP_012118715.1\|3559439_3560138_-	response regulator transcription factor	W8CYM9	Bacillus_phage	9.2e-35	35.4
WP_012118718.1\|3561216_3561921_-	bacitracin ABC transporter permease	NA	NA	NA	NA
WP_025285446.1\|3561985_3562912_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-43	45.9
WP_015240798.1\|3563260_3563716_-	protein SpsL	NA	NA	NA	NA
WP_012118721.1\|3563712_3564561_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.1e-37	37.3
WP_007407684.1\|3564581_3565529_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.9e-69	42.9
WP_012118722.1\|3565531_3566269_-	NTP transferase domain-containing protein	G3MA50	Bacillus_virus	6.5e-47	42.3
WP_012118723.1\|3566296_3567301_-\|coat	spore coat protein	NA	NA	NA	NA
WP_012118724.1\|3567302_3568046_-\|coat	spore coat protein	NA	NA	NA	NA
WP_012118725.1\|3568035_3569157_-\|coat	spore coat protein	NA	NA	NA	NA
WP_012118726.1\|3569156_3570020_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012118727.1\|3570020_3571190_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA
WP_012118728.1\|3571212_3572637_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_003150972.1\|3572641_3573412_-	glycosyltransferase family 2 protein	A0A0F7L2F7	uncultured_marine_virus	4.4e-06	26.3
WP_007407693.1\|3573692_3574244_+\|coat	spore coat protein GerQ	NA	NA	NA	NA
WP_012118729.1\|3574290_3574662_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_012118730.1\|3574725_3576045_-	purine permease	NA	NA	NA	NA
WP_015387535.1\|3576063_3576486_-	YwdI family protein	NA	NA	NA	NA
WP_012118732.1\|3576545_3577229_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	3.2e-48	44.7
WP_012118733.1\|3577243_3578050_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_012118734.1\|3578134_3578662_-	hypothetical protein	NA	NA	NA	NA
WP_023357186.1\|3578706_3579342_-	hypothetical protein	NA	NA	NA	NA
WP_003150960.1\|3579334_3579673_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_003150959.1\|3579822_3580635_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_007407702.1\|3580666_3580906_-	hypothetical protein	NA	NA	NA	NA
WP_012118736.1\|3581005_3582445_-	sucrose-6-phosphate hydrolase	F8WPR5	Bacillus_phage	7.0e-21	25.3
WP_007614557.1\|3582441_3583824_-	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA
WP_012118737.1\|3584044_3584875_-	transcription antiterminator	NA	NA	NA	NA
WP_012118738.1\|3584898_3585213_-	hypothetical protein	NA	NA	NA	NA
WP_012118739.1\|3585738_3588150_+	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	3.8e-19	36.8
WP_012118740.1\|3588191_3589193_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_007407708.1\|3590646_3591396_-	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
WP_007614568.1\|3591498_3592686_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_012118742.1\|3592887_3593346_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003150937.1\|3593638_3593899_+	spore morphogenesis/germination protein YwcE	NA	NA	NA	NA
WP_007407711.1\|3593942_3594311_-	cytochrome aa3 quinol oxidase subunit IV	NA	NA	NA	NA
WP_003150930.1\|3594312_3594927_-	cytochrome aa3 quinol oxidase subunit III	NA	NA	NA	NA
WP_012118743.1\|3594941_3596891_-	cytochrome aa3 quinol oxidase subunit I	NA	NA	NA	NA
WP_012118744.1\|3596918_3597884_-	cytochrome aa3 quinol oxidase subunit II	NA	NA	NA	NA
WP_003150926.1\|3598386_3598632_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_012118745.1\|3598647_3600189_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA
WP_007407714.1\|3600178_3601363_-	galactokinase	NA	NA	NA	NA
WP_041482275.1\|3601414_3601801_-	GtrA family protein	NA	NA	NA	NA
WP_007614590.1\|3601880_3602504_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003150917.1\|3602839_3603001_+	DNA-binding anti-repressor SinI	NA	NA	NA	NA
WP_007407718.1\|3603217_3603898_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012118747.1\|3603897_3604572_+	streptomycin biosynthesis protein StrF	NA	NA	NA	NA
WP_012118748.1\|3604592_3605195_-	DsbA family oxidoreductase	NA	NA	NA	NA
WP_012118749.1\|3605280_3606537_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA
WP_012118750.1\|3606555_3606750_-	hypothetical protein	NA	NA	NA	NA
WP_012118751.1\|3606950_3607625_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_012118752.1\|3607621_3608440_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_003150908.1\|3608442_3609351_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007407725.1\|3609457_3609844_+\|holin	CidA/LrgA family holin-like protein	NA	NA	NA	NA
WP_012118753.1\|3609825_3610506_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage