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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP044492 Streptococcus mutans strain T8 chromosome, complete genome 1 crisprs DEDDh,cas3,csm6,csa3,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5 0 11 7 0

Results visualization

1. NZ_CP044492
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044492_1 1602406-1604960 TypeI I-C
38 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP044492_1 1.31|1604429|36|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604429-1604464 36 MT430910 Streptococcus phage smHBZ8, complete genome 26811-26846 1 0.972
NZ_CP044492_1 1.36|1604761|36|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604761-1604796 36 DQ386162 Streptococcus phage M102AD, complete genome 26575-26610 1 0.972
NZ_CP044492_1 1.21|1603771|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1603771-1603804 34 AM749121 Streptococcus phage M102 complete genome 21366-21399 2 0.941
NZ_CP044492_1 1.21|1603771|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1603771-1603804 34 NC_012884 Streptococcus phage M102, complete genome 21366-21399 2 0.941
NZ_CP044492_1 1.21|1603771|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1603771-1603804 34 DQ386162 Streptococcus phage M102AD, complete genome 21488-21521 2 0.941
NZ_CP044492_1 1.28|1604232|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604232-1604265 34 MT430910 Streptococcus phage smHBZ8, complete genome 17583-17616 2 0.941
NZ_CP044492_1 1.28|1604232|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604232-1604265 34 DQ386162 Streptococcus phage M102AD, complete genome 14598-14631 2 0.941
NZ_CP044492_1 1.36|1604761|36|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604761-1604796 36 NC_029030 Streptococcus phage APCM01, complete genome 27280-27315 2 0.944
NZ_CP044492_1 1.33|1604564|33|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604564-1604596 33 AM749121 Streptococcus phage M102 complete genome 2861-2893 4 0.879
NZ_CP044492_1 1.33|1604564|33|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604564-1604596 33 NC_012884 Streptococcus phage M102, complete genome 2861-2893 4 0.879
NZ_CP044492_1 1.16|1603437|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1603437-1603470 34 NC_015699 Lactobacillus reuteri SD2112 plasmid pLR580, complete sequence 6008-6041 8 0.765
NZ_CP044492_1 1.16|1603437|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1603437-1603470 34 MH542234 Staphylococcus phage Terranova, complete genome 68554-68587 8 0.765
NZ_CP044492_1 1.16|1603437|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1603437-1603470 34 MH321491 Staphylococcus phage Twillingate, complete genome 68085-68118 8 0.765
NZ_CP044492_1 1.32|1604497|35|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604497-1604531 35 DQ386162 Streptococcus phage M102AD, complete genome 24490-24524 8 0.771
NZ_CP044492_1 1.35|1604695|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604695-1604728 34 NZ_CP045351 Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence 221270-221303 8 0.765
NZ_CP044492_1 1.11|1603105|33|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1603105-1603137 33 MT684598 Streptomyces phage Faust, complete genome 101209-101241 9 0.727
NZ_CP044492_1 1.30|1604363|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604363-1604396 34 MK249871 Vibrio phage LP.2, complete genome 17291-17324 9 0.735
NZ_CP044492_1 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604895-1604928 34 NZ_CP019854 Borreliella burgdorferi plasmid lp54, complete sequence 46971-47004 9 0.735
NZ_CP044492_1 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604895-1604928 34 NZ_CP019765 Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence 46971-47004 9 0.735
NZ_CP044492_1 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604895-1604928 34 NC_011784 Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence 46955-46988 9 0.735
NZ_CP044492_1 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604895-1604928 34 NC_001857 Borreliella burgdorferi B31 plasmid lp54, complete sequence 46978-47011 9 0.735
NZ_CP044492_1 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604895-1604928 34 NC_013129 Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence 46941-46974 9 0.735
NZ_CP044492_1 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT 1604895-1604928 34 NC_013129 Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence 47964-47997 9 0.735

1. spacer 1.31|1604429|36|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to MT430910 (Streptococcus phage smHBZ8, complete genome) position: , mismatch: 1, identity: 0.972

tttgatctgtgtcgtctaagattgattgatagatat	CRISPR spacer
tttggtctgtgtcgtctaagattgattgatagatat	Protospacer
****.*******************************

2. spacer 1.36|1604761|36|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to DQ386162 (Streptococcus phage M102AD, complete genome) position: , mismatch: 1, identity: 0.972

aaacgttacagagaaaatcagcgagtgagagtagct	CRISPR spacer
aagcgttacagagaaaatcagcgagtgagagtagct	Protospacer
**.*********************************

3. spacer 1.21|1603771|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 2, identity: 0.941

gttacatacgcttagcatatcgcaaatagaccgt	CRISPR spacer
gttatatacgcttagcatatcgcaaatagaccgc	Protospacer
****.****************************.

4. spacer 1.21|1603771|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 2, identity: 0.941

gttacatacgcttagcatatcgcaaatagaccgt	CRISPR spacer
gttatatacgcttagcatatcgcaaatagaccgc	Protospacer
****.****************************.

5. spacer 1.21|1603771|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to DQ386162 (Streptococcus phage M102AD, complete genome) position: , mismatch: 2, identity: 0.941

gttacatacgcttagcatatcgcaaatagaccgt	CRISPR spacer
gttatatacgcttagcatatcgcaaatagaccgc	Protospacer
****.****************************.

6. spacer 1.28|1604232|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to MT430910 (Streptococcus phage smHBZ8, complete genome) position: , mismatch: 2, identity: 0.941

ttggtttggtggttgggtgcgctttaacgtacca	CRISPR spacer
ttggttcggtggttgggtgcgctttaatgtacca	Protospacer
******.********************.******

7. spacer 1.28|1604232|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to DQ386162 (Streptococcus phage M102AD, complete genome) position: , mismatch: 2, identity: 0.941

ttggtttggtggttgggtgcgctttaacgtacca	CRISPR spacer
ttggtttggcggttgggtgcgctttaacgtgcca	Protospacer
*********.********************.***

8. spacer 1.36|1604761|36|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to NC_029030 (Streptococcus phage APCM01, complete genome) position: , mismatch: 2, identity: 0.944

aaacgttacagagaaaatcagcgagtgagagtagct	CRISPR spacer
gaacgttacagagaaaatcagtgagtgagagtagct	Protospacer
.********************.**************

9. spacer 1.33|1604564|33|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 4, identity: 0.879

ctcttcccagatatttaccgggtctttattttt	CRISPR spacer
gttttcccagatatttactgggtctttattctt	Protospacer
 *.***************.***********.**

10. spacer 1.33|1604564|33|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 4, identity: 0.879

ctcttcccagatatttaccgggtctttattttt	CRISPR spacer
gttttcccagatatttactgggtctttattctt	Protospacer
 *.***************.***********.**

11. spacer 1.16|1603437|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to NC_015699 (Lactobacillus reuteri SD2112 plasmid pLR580, complete sequence) position: , mismatch: 8, identity: 0.765

cgcaatgcgtggtataataaatatgtaaaatgaa	CRISPR spacer
attattgcgtggtataatagatatgtaaaaagtg	Protospacer
  .* **************.********** * .

12. spacer 1.16|1603437|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to MH542234 (Staphylococcus phage Terranova, complete genome) position: , mismatch: 8, identity: 0.765

cgcaatgcgtggtataataaatatgtaaaatgaa	CRISPR spacer
atacatatgtggtataataaatatataaaaggaa	Protospacer
    **..****************.***** ***

13. spacer 1.16|1603437|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to MH321491 (Staphylococcus phage Twillingate, complete genome) position: , mismatch: 8, identity: 0.765

cgcaatgcgtggtataataaatatgtaaaatgaa	CRISPR spacer
atacatatgtggtataataaatatataaaaggaa	Protospacer
    **..****************.***** ***

14. spacer 1.32|1604497|35|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to DQ386162 (Streptococcus phage M102AD, complete genome) position: , mismatch: 8, identity: 0.771

tgcttgggacaatagtccctgtcaaacgctctata	CRISPR spacer
ctttcggagcaatggttcctgtcaaacgctctata	Protospacer
. .*.**..****.**.******************

15. spacer 1.35|1604695|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 8, identity: 0.765

gaaaacttggcgtgctgagtgtttaaagctaatt	CRISPR spacer
gaaaaactggcgtgctgagtgtttatggtcaagg	Protospacer
***** .****************** .*..**  

16. spacer 1.11|1603105|33|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to MT684598 (Streptomyces phage Faust, complete genome) position: , mismatch: 9, identity: 0.727

cgccaatcaccttgagaggagcgagcgcaaatt	CRISPR spacer
cgccaatctccttgagaagagcgacagaggttc	Protospacer
******** ********.******  * .. *.

17. spacer 1.30|1604363|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to MK249871 (Vibrio phage LP.2, complete genome) position: , mismatch: 9, identity: 0.735

tggttttgattatgttggtggtcgtgttgtttgg	CRISPR spacer
cattaaggtttatgttggtggtcaagttgtttgg	Protospacer
.. *   * **************. *********

18. spacer 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019854 (Borreliella burgdorferi plasmid lp54, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaagagctaaaagaaattgctaaggatttaga	CRISPR spacer
cttcagagctaaaagcaattggtaaggaactgga	Protospacer
    *********** ***** ****** .*.**

19. spacer 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019765 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaagagctaaaagaaattgctaaggatttaga	CRISPR spacer
cttcagagctaaaagcaattggtaaggaactgga	Protospacer
    *********** ***** ****** .*.**

20. spacer 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to NC_011784 (Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaagagctaaaagaaattgctaaggatttaga	CRISPR spacer
cttcagagctaaaagcaattggtaaggaactgga	Protospacer
    *********** ***** ****** .*.**

21. spacer 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to NC_001857 (Borreliella burgdorferi B31 plasmid lp54, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaagagctaaaagaaattgctaaggatttaga	CRISPR spacer
cttcagagctaaaagcaattggtaaggaactgga	Protospacer
    *********** ***** ****** .*.**

22. spacer 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to NC_013129 (Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaagagctaaaagaaattgctaaggatttaga	CRISPR spacer
cttcagagctaaaagcaattggtaaggaactgga	Protospacer
    *********** ***** ****** .*.**

23. spacer 1.38|1604895|34|NZ_CP044492|PILER-CR,CRISPRCasFinder,CRT matches to NC_013129 (Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence) position: , mismatch: 9, identity: 0.735

gaaaagagctaaaagaaattgctaaggatttaga	CRISPR spacer
cttcagagctaaaagcaattggtaaggaactgga	Protospacer
    *********** ***** ****** .*.**

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 33560 : 43786 6 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 444530 : 453929 9 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_3 882676 : 889527 7 Pneumococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1019707 : 1028490 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_5 1509774 : 1523615 18 Streptococcus_phage(84.62%) NA NA
DBSCAN-SWA_6 1716396 : 1726043 9 uncultured_Mediterranean_phage(100.0%) tRNA,bacteriocin NA
DBSCAN-SWA_7 1952943 : 1964544 12 Streptococcus_phage(25.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage