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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP044497 Haemophilus influenzae strain PittGG chromosome, complete genome 1 crisprs DinG,DEDDh,cas3 3 1 5 0

Results visualization

1. NZ_CP044497
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044497_1 380803-381126 Orphan NA
5 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP044497_1 1.1|380831|34|NZ_CP044497|CRT 380831-380864 34 NZ_CP044497.1 443843-443876 2 0.941
NZ_CP044497_1 1.3|380943|34|NZ_CP044497|CRT 380943-380976 34 NZ_CP044497.1 443843-443876 2 0.941
NZ_CP044497_1 1.5|381067|32|NZ_CP044497|CRT 381067-381098 32 NZ_CP044497.1 381127-381158 2 0.938
NZ_CP044497_1 1.5|381067|32|NZ_CP044497|CRT 381067-381098 32 NZ_CP044497.1 411404-411435 2 0.938

1. spacer 1.1|380831|34|NZ_CP044497|CRT matches to position: 443843-443876, mismatch: 2, identity: 0.941

gttggtgggctaaagcccaccctacaactactga	CRISPR spacer
gttggtgggctttagcccaccctacaactactga	Protospacer
***********  *********************

2. spacer 1.3|380943|34|NZ_CP044497|CRT matches to position: 443843-443876, mismatch: 2, identity: 0.941

gttggtgggctaaagcccaccctacaactactga	CRISPR spacer
gttggtgggctttagcccaccctacaactactga	Protospacer
***********  *********************

3. spacer 1.5|381067|32|NZ_CP044497|CRT matches to position: 381127-381158, mismatch: 2, identity: 0.938

gttggtgggctgaagcccaccctacaacgact	CRISPR spacer
gttggtgggctgaagcccagcctacaactact	Protospacer
******************* ******** ***

4. spacer 1.5|381067|32|NZ_CP044497|CRT matches to position: 411404-411435, mismatch: 2, identity: 0.938

gttggtgggctgaagcccaccctacaacgact	CRISPR spacer
gttggtgggctaaagcccaccctacaactact	Protospacer
***********.**************** ***

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP044497_1 1.5|381067|32|NZ_CP044497|CRT 381067-381098 32 NZ_CP025432 Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence 22283-22314 10 0.688

1. spacer 1.5|381067|32|NZ_CP044497|CRT matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 10, identity: 0.688

gttggtgggctgaagcccaccctacaacgact	CRISPR spacer
tagggcgggctgaagcccgccctacaggcgat	Protospacer
   **.************.*******.  . *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 660604 : 712681 72 Mannheimia_phage(12.2%) plate,integrase,head,tRNA,terminase attL 655383:655399|attR 692177:692193
DBSCAN-SWA_2 1422181 : 1439595 22 Haemophilus_phage(57.89%) terminase,holin NA
DBSCAN-SWA_3 1522312 : 1535220 11 Mycoplasma_phage(22.22%) NA NA
DBSCAN-SWA_4 1686657 : 1695170 9 uncultured_Caudovirales_phage(16.67%) NA NA
DBSCAN-SWA_5 1826391 : 1835457 9 Escherichia_phage(83.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage