CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP042528	Citrobacter freundii strain E11 plasmid pE11_004, complete sequence	0 crisprs	NA	0
NZ_CP042529	Citrobacter freundii strain E11 plasmid pE11_005, complete sequence	0 crisprs	NA	0
NZ_CP042524	Citrobacter freundii strain E11 chromosome, complete genome	0 crisprs	csa3,WYL,cas3,DEDDh,DinG,RT	10
NZ_CP042526	Citrobacter freundii strain E11 plasmid pE11_002, complete sequence	0 crisprs	DEDDh	1
NZ_CP042525	Citrobacter freundii strain E11 plasmid pE11_001, complete sequence	0 crisprs	csa3	4
NZ_CP042527	Citrobacter freundii strain E11 plasmid pE11_003, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

89899 : 151354

Escherichia_phage(27.27%)

integrase,protease,transposase

attL 115898:115957|attR 147148:147967

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000462754.1\|89899_90556_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_000340139.1\|90758_91256_+	membrane protein	NA	NA	NA	NA
WP_012695445.1\|91260_92649_+	hypothetical protein	NA	NA	NA	NA
WP_012477377.1\|93049_93343_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000088044.1\|93347_94673_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_000134171.1\|94733_94940_+	hypothetical protein	NA	NA	NA	NA
WP_000985909.1\|95040_95451_+	hypothetical protein	NA	NA	NA	NA
WP_001805097.1\|95463_95988_+	hypothetical protein	NA	NA	NA	NA
WP_000427623.1\|96169_97174_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_000405672.1\|97264_97699_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001287661.1\|97784_100190_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.0e-141	46.1
WP_000118563.1\|100186_101263_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_000993245.1\|101271_101484_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001446012.1\|101446_101566_+	hypothetical protein	NA	NA	NA	NA
WP_001087807.1\|101549_101786_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277466.1\|101782_102148_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000209297.1\|102165_103851_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_000522996.1\|103889_104315_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|104342_104618_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294653.1\|104633_105029_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|105100_105556_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000278471.1\|106233_106659_+	hypothetical protein	NA	NA	NA	NA
WP_001224686.1\|107207_107516_+	hypothetical protein	NA	NA	NA	NA
WP_000784387.1\|107531_108389_+	HNH endonuclease	G0X580	Salmonella_phage	3.9e-11	34.2
WP_001287391.1\|108995_109400_-	H-NS histone family protein	NA	NA	NA	NA
WP_001100635.1\|109577_109871_-	hypothetical protein	NA	NA	NA	NA
WP_000175475.1\|109896_110133_-	hypothetical protein	NA	NA	NA	NA
WP_000490638.1\|110688_111354_-	hypothetical protein	NA	NA	NA	NA
WP_001371925.1\|111411_111792_-	hypothetical protein	NA	NA	NA	NA
115898:115957	attL	NA	NA	NA	NA
WP_001067855.1\|115949_116654_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000174662.1\|117130_117895_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.9e-25	52.4
WP_000182008.1\|118359_119037_+	hypothetical protein	NA	NA	NA	NA
WP_001071437.1\|119067_119691_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_000778342.1\|120221_120917_+	hypothetical protein	NA	NA	NA	NA
WP_007372356.1\|121092_121350_-	hypothetical protein	NA	NA	NA	NA
WP_000981293.1\|121376_122204_-	ParA family protein	J9QE36	Clostridium_phage	2.0e-12	27.4
WP_000151478.1\|122382_123318_+	hypothetical protein	NA	NA	NA	NA
WP_022646501.1\|124212_124542_+	hypothetical protein	NA	NA	NA	NA
WP_007372357.1\|124719_124857_+	hypothetical protein	NA	NA	NA	NA
WP_001217270.1\|125063_126893_+	hypothetical protein	NA	NA	NA	NA
WP_000215804.1\|127062_129750_-	hypothetical protein	NA	NA	NA	NA
WP_001270901.1\|129901_130732_-	hypothetical protein	NA	NA	NA	NA
WP_085954987.1\|130847_131036_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_000139428.1\|132116_132830_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000699996.1\|132878_133145_+	transcriptional regulator	NA	NA	NA	NA
WP_000103071.1\|133446_135423_-	excinuclease ABC subunit UvrB	A7WKH8	Acidianus_filamentous_virus	7.1e-08	39.0
WP_001120775.1\|135709_135985_+	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_000842119.1\|136043_137153_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.8e-32	30.3
WP_000070400.1\|137203_137602_+	VOC family protein	NA	NA	NA	NA
WP_000664785.1\|137759_139094_+	DUF3422 family protein	NA	NA	NA	NA
WP_000440264.1\|139141_139972_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000233327.1\|139989_141300_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_000038427.1\|141503_144155_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.1e-156	33.8
WP_000765646.1\|144346_144778_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_001141269.1\|145142_145418_+	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_001067855.1\|147199_147904_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001572372.1\|148069_148546_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
147148:147967	attR	NA	NA	NA	NA
WP_001572373.1\|148622_150242_-	phosphoethanolamine--lipid A transferase MCR-9.1	NA	NA	NA	NA
WP_001572374.1\|150430_151354_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.4e-176	99.3

DBSCAN-SWA_2

165380 : 215863

uncultured_Caudovirales_phage(37.5%)

integrase,transposase

attL 172166:172225|attR 213683:215960

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000927306.1\|165380_166859_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	7.3e-199	74.4
WP_001066652.1\|166877_167705_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-43	37.2
WP_000065802.1\|167764_168190_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-50	70.7
WP_000922628.1\|168202_169492_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	9.9e-168	71.4
WP_000941305.1\|169537_169858_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-20	53.7
WP_000130816.1\|169944_170649_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	8.8e-86	72.9
WP_000125668.1\|170681_172085_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
172166:172225	attL	NA	NA	NA	NA
WP_001567369.1\|172281_172914_+	hypothetical protein	NA	NA	NA	NA
WP_001567368.1\|172942_174346_-\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_044257539.1\|174633_175479_+	hypothetical protein	NA	NA	NA	NA
WP_044257537.1\|175911_176646_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_044257535.1\|177009_177942_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_032489965.1\|178132_178939_+	ABC transporter permease	NA	NA	NA	NA
WP_072193875.1\|178976_179744_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-28	37.3
WP_044257532.1\|179835_181623_+	allophanate hydrolase	NA	NA	NA	NA
WP_151586908.1\|182752_183733_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.3e-185	99.1
WP_044257530.1\|184403_184901_+	damage-inducible protein DinB	NA	NA	NA	NA
WP_001067855.1\|185179_185884_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001549940.1\|186668_187571_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001067855.1\|187723_188428_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_151085594.1\|188833_189094_+	hypothetical protein	NA	NA	NA	NA
WP_151085595.1\|189090_189657_+	hypothetical protein	NA	NA	NA	NA
WP_151085596.1\|189690_190182_+	DNA-binding protein	NA	NA	NA	NA
WP_151085597.1\|190225_190579_+	hypothetical protein	NA	NA	NA	NA
WP_151085598.1\|190708_190939_+	hypothetical protein	NA	NA	NA	NA
WP_151085599.1\|191330_191597_+	hypothetical protein	NA	NA	NA	NA
WP_151085600.1\|191843_192743_-	hypothetical protein	NA	NA	NA	NA
WP_151085601.1\|193446_194331_+	hypothetical protein	NA	NA	NA	NA
WP_000156884.1\|194701_195724_+\|transposase	IS110-like element IS5708 family transposase	NA	NA	NA	NA
WP_104011511.1\|197763_198899_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-75	53.1
WP_032425473.1\|199831_200755_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	2.3e-166	92.8
WP_001549948.1\|201196_202432_+	hypothetical protein	NA	NA	NA	NA
WP_001549947.1\|202484_203588_+	ring-opening amidohydrolase	NA	NA	NA	NA
WP_100160450.1\|203703_205014_+	purine permease	Q9KX94	Enterobacteria_phage	4.4e-30	27.2
WP_072193879.1\|205646_206090_+	DUF2877 domain-containing protein	NA	NA	NA	NA
WP_049592200.1\|206185_207736_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA
WP_001549942.1\|207745_209167_+	DUF1116 domain-containing protein	NA	NA	NA	NA
WP_001549941.1\|209163_210126_+	carbamate kinase	NA	NA	NA	NA
WP_001067855.1\|210344_211049_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071885289.1\|211088_211370_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A077SL39	Escherichia_phage	5.7e-44	100.0
WP_072040076.1\|211551_212466_+	J domain-containing protein	A0A1E1EVQ1	Acanthamoeba_castellanii_mimivirus	1.8e-06	40.3
WP_044256790.1\|212549_213530_+	hypothetical protein	NA	NA	NA	NA
WP_001567369.1\|213798_214431_+	hypothetical protein	NA	NA	NA	NA
WP_001567368.1\|214459_215863_-\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
213683:215960	attR	NA	NA	NA	NA

DBSCAN-SWA_3

265415 : 296960

Stx2-converting_phage(40.0%)

integrase,transposase

attL 275924:275936|attR 297188:297200

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016338361.1\|265415_266339_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	6.2e-172	96.7
WP_045337785.1\|266537_267863_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.4e-113	48.1
WP_016151347.1\|269106_269628_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_004118237.1\|269624_270578_+	fec operon regulator FecR	NA	NA	NA	NA
WP_007898891.1\|270664_272989_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_004118241.1\|273033_273936_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_004118243.1\|273932_274931_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_004118246.1\|274927_275884_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA
WP_004152282.1\|275884_276652_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
275924:275936	attL	NA	NA	NA	NA
WP_004118251.1\|276750_277044_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
WP_007898884.1\|277374_277653_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000427620.1\|277914_278919_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_000156884.1\|279253_280276_-\|transposase	IS110-like element IS5708 family transposase	NA	NA	NA	NA
WP_001118620.1\|280821_281745_+\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	8.4e-177	99.7
WP_045337770.1\|281790_282744_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_007851507.1\|283113_284196_+	DNA-binding transcriptional repressor LacI	C6ZCU4	Enterobacteria_phage	6.5e-189	98.1
WP_012477407.1\|284317_287392_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
WP_003846917.1\|287443_288697_+	lactose permease	NA	NA	NA	NA
WP_003846919.1\|288753_288924_+	hypothetical protein	NA	NA	NA	NA
WP_000839182.1\|289807_290212_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
WP_000612626.1\|290208_290556_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_012477410.1\|290604_292143_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	7.7e-276	93.2
WP_007897920.1\|293959_295726_-	hypothetical protein	NA	NA	NA	NA
WP_007897923.1\|295712_296960_-\|integrase	site-specific integrase	NA	NA	NA	NA
297188:297200	attR	NA	NA	NA	NA

DBSCAN-SWA_4

312233 : 319710

Stx2-converting_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001251242.1\|312233_312665_-	hypothetical protein	A0A1V0E5M6	Salmonella_phage	4.2e-22	49.6
WP_000803858.1\|312768_313293_-	hypothetical protein	NA	NA	NA	NA
WP_000277498.1\|313615_314380_+	hypothetical protein	NA	NA	NA	NA
WP_001447802.1\|314460_315222_+	methyltransferase	A0A2I7RNS1	Vibrio_phage	1.2e-19	32.9
WP_000149862.1\|315315_315579_+	hypothetical protein	M9UXL5	Escherichia_phage	3.2e-09	46.5
WP_000491820.1\|315622_316210_+	hypothetical protein	A0A248SKW5	Klebsiella_phage	1.1e-09	71.1
WP_151586914.1\|316674_317268_+	DUF4165 domain-containing protein	NA	NA	NA	NA
WP_048994037.1\|317299_317740_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.6e-19	60.3
WP_004189161.1\|317736_318087_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_023307215.1\|318117_319710_+\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.6e-175	61.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP042524

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

802261 : 872271

Cronobacter_phage(14.29%)

integrase,plate,tRNA,protease

attL 815420:815438|attR 869692:869710

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044713759.1\|802261_802687_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_044713761.1\|802689_804525_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_044713831.1\|804491_805538_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_044713832.1\|805554_806853_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_044713763.1\|806849_807383_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_044713765.1\|807385_808729_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_044713767.1\|808733_809543_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_071698371.1\|809551_812287_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	8.2e-87	31.7
WP_167736229.1\|812283_813030_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_044713772.1\|813034_814456_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_136345917.1\|814479_818004_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
815420:815438	attL	NA	NA	NA	NA
WP_136345916.1\|818014_819382_+	hypothetical protein	NA	NA	NA	NA
WP_044713777.1\|819384_819864_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_044713779.1\|820064_820922_-	hypothetical protein	NA	NA	NA	NA
WP_136345915.1\|822559_822883_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_130715145.1\|823317_823689_+	hypothetical protein	NA	NA	NA	NA
WP_163198901.1\|824149_824323_-	hypothetical protein	NA	NA	NA	NA
WP_136345914.1\|824526_825075_-	hypothetical protein	NA	NA	NA	NA
WP_167736230.1\|825075_829182_-	type IV secretion protein Rhs	S5W9C6	Leptospira_phage	1.9e-07	32.8
WP_136345913.1\|829249_831361_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	6.2e-26	25.0
WP_130715124.1\|833544_835041_+	DUF3375 domain-containing protein	NA	NA	NA	NA
WP_130715148.1\|835139_835796_+	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_136345911.1\|835792_839080_+	hypothetical protein	NA	NA	NA	NA
WP_136345910.1\|839081_840230_+	hypothetical protein	NA	NA	NA	NA
WP_130715127.1\|840328_842401_+	AAA family ATPase	NA	NA	NA	NA
WP_136345909.1\|842478_846672_+	hypothetical protein	A0A2H4PQT3	Staphylococcus_phage	3.8e-75	29.5
WP_160180768.1\|846746_846866_+	hypothetical protein	NA	NA	NA	NA
WP_088903068.1\|846960_847422_+	hypothetical protein	NA	NA	NA	NA
WP_048213204.1\|849624_850182_-	AAA family ATPase	A0A219VHB7	Ochrobactrum_phage	1.8e-20	53.5
WP_088903070.1\|850389_851649_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	1.3e-82	44.6
WP_003846348.1\|851992_852700_-	DUF554 domain-containing protein	NA	NA	NA	NA
WP_003838203.1\|853168_855304_+	ornithine decarboxylase	NA	NA	NA	NA
WP_003027130.1\|855356_856613_-	nucleoside permease	NA	NA	NA	NA
WP_167736231.1\|856824_857910_-	membrane-bound lytic murein transglycosylase MltC	A0A0H3V0Q1	Geobacillus_virus	4.5e-12	39.0
WP_003027126.1\|857996_858266_-	oxidative damage protection protein	NA	NA	NA	NA
WP_003846351.1\|858293_859346_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_003027117.1\|859506_860226_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_003027115.1\|860225_860552_+	YggL family protein	NA	NA	NA	NA
WP_003838208.1\|860601_861321_+	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_044713806.1\|861509_862556_+	L-asparaginase 2	NA	NA	NA	NA
WP_003838210.1\|862672_863680_+	DUF1202 family protein	NA	NA	NA	NA
WP_088903071.1\|863742_864879_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_003027104.1\|864871_865465_-	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_003027101.1\|865472_865763_-	YggU family protein	NA	NA	NA	NA
WP_003825417.1\|865759_866326_-	YggT family protein	NA	NA	NA	NA
WP_003838215.1\|866344_867049_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_088903072.1\|867066_868047_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_006686843.1\|868043_868460_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_123924839.1\|868459_869095_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_003027083.1\|869198_870146_-	glutathione synthase	NA	NA	NA	NA
869692:869710	attR	NA	NA	NA	NA
WP_003027080.1\|870165_870897_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_016150969.1\|870971_871679_-	deoxyribonuclease I	NA	NA	NA	NA
WP_003838223.1\|871773_872271_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

1816313 : 1824732

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_136345870.1\|1816313_1817261_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	1.7e-07	25.3
WP_003844383.1\|1817244_1817976_+	ABC transporter permease	NA	NA	NA	NA
WP_003027354.1\|1817956_1818064_-	protein YohO	NA	NA	NA	NA
WP_049002964.1\|1818115_1818847_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.8e-105	93.5
WP_003027348.1\|1819072_1820758_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-281	91.6
WP_003840155.1\|1820754_1821474_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_003027346.1\|1821520_1821991_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	4.9e-64	76.9
WP_071697500.1\|1822033_1822492_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.0e-50	69.3
WP_003027344.1\|1822698_1824732_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.0e-54	27.6

DBSCAN-SWA_3

1864100 : 1873678

Bacillus_phage(28.57%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167736259.1\|1864100_1866047_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	7.0e-40	41.3
WP_003036813.1\|1866121_1866346_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
WP_003036810.1\|1866669_1866990_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
WP_003036804.1\|1867020_1869297_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.1
WP_003844346.1\|1869566_1870928_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	4.1e-204	92.9
WP_003841759.1\|1871087_1871420_-	YegP family protein	NA	NA	NA	NA
WP_003036797.1\|1871555_1872278_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	9.2e-30	32.7
WP_003844344.1\|1872274_1873678_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	5.0e-32	29.2

DBSCAN-SWA_4

1996900 : 2004907

Salmonella_phage(28.57%)

integrase

attL 1995006:1995019|attR 2008810:2008823

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1995006:1995019	attL	NA	NA	NA	NA
WP_044711147.1\|1996900_1997884_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.7e-165	82.3
WP_044711145.1\|1997888_1998110_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	3.0e-24	70.3
WP_044711143.1\|1998286_1999111_-	DUF2303 family protein	U5P439	Shigella_phage	8.0e-147	97.4
WP_072211986.1\|1999176_1999557_-	hypothetical protein	U5P4J6	Shigella_phage	5.3e-61	97.6
WP_044711136.1\|1999974_2000679_+	hypothetical protein	NA	NA	NA	NA
WP_044711135.1\|2000724_2001396_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	3.1e-72	54.5
WP_003839058.1\|2002159_2002492_+	EmrE family multidrug efflux SMR transporter	NA	NA	NA	NA
WP_044711132.1\|2002594_2003773_-	porin	Q1MVN1	Enterobacteria_phage	9.9e-106	55.7
WP_003839062.1\|2004214_2004907_+	phosphohydrolase	S4W232	Pandoravirus	8.0e-07	27.1
2008810:2008823	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2042954 : 2082089

Salmonella_phage(25.49%)

integrase,capsid,protease,terminase,head,portal,tail

attL 2042773:2042832|attR 2084757:2084880

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2042773:2042832	attL	NA	NA	NA	NA
WP_071692372.1\|2042954_2043965_-\|integrase	tyrosine-type recombinase/integrase	K7PLZ2	Enterobacterial_phage	1.0e-172	86.9
WP_065944714.1\|2043964_2044192_-	DUF4224 domain-containing protein	K7PHA0	Enterobacterial_phage	4.6e-36	88.0
WP_003834015.1\|2044506_2044896_-	hypothetical protein	S4TTI6	Salmonella_phage	5.3e-56	79.7
WP_167736265.1\|2044892_2045585_-	hypothetical protein	A0A1C9IHU7	Salmonella_phage	2.2e-28	56.8
WP_167736266.1\|2045574_2045811_-	hypothetical protein	G8C7U9	Escherichia_phage	1.9e-24	81.7
WP_167736394.1\|2045816_2046173_-	hypothetical protein	A0A0K2FJF6	Enterobacteria_phage	5.9e-38	68.8
WP_167736267.1\|2046523_2047090_-	hypothetical protein	NA	NA	NA	NA
WP_167736268.1\|2047654_2048695_-	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	7.2e-161	86.9
WP_167736269.1\|2048694_2049108_-	hypothetical protein	K7PJS4	Enterobacterial_phage	3.1e-46	72.1
WP_151564552.1\|2049858_2050074_-	hypothetical protein	A0A193GYF6	Enterobacter_phage	2.3e-13	46.5
WP_160180129.1\|2050318_2050966_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	9.3e-74	62.5
WP_032207801.1\|2051070_2051268_+	hypothetical protein	H9C161	Pectobacterium_phage	1.9e-17	66.7
WP_160180131.1\|2051293_2051758_+	hypothetical protein	K7PJS5	Enterobacterial_phage	5.8e-70	90.1
WP_160180134.1\|2051998_2052184_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.3e-12	65.4
WP_065944720.1\|2052167_2053112_+	hypothetical protein	K7PLZ7	Enterobacterial_phage	6.4e-148	81.2
WP_160180136.1\|2053114_2053558_+	hypothetical protein	U5P0U0	Shigella_phage	8.2e-13	30.7
WP_160180138.1\|2053557_2054226_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	4.0e-96	80.1
WP_003833987.1\|2054212_2054431_+	hypothetical protein	NA	NA	NA	NA
WP_160180140.1\|2054432_2054750_+	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	2.4e-27	56.7
WP_069891578.1\|2054749_2055139_+	RusA family crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	3.5e-44	66.7
WP_003833980.1\|2055155_2055881_+	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	9.8e-56	53.1
WP_160180142.1\|2055877_2056867_+	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	3.8e-143	71.4
WP_160180144.1\|2056881_2057460_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	9.3e-49	55.6
WP_096878852.1\|2057538_2058018_-	hypothetical protein	F1C594	Cronobacter_phage	4.2e-39	56.7
WP_016150433.1\|2058266_2058545_+	hypothetical protein	K7PGZ9	Enterobacteria_phage	4.3e-44	95.7
WP_160180146.1\|2058516_2059065_+	glycoside hydrolase family protein	K7PM52	Enterobacteria_phage	1.5e-96	91.8
WP_160180788.1\|2059061_2059577_+	DUF2514 family protein	A0A291LBG9	Klebsiella_phage	1.2e-07	49.4
WP_160180149.1\|2059703_2060573_+	hypothetical protein	NA	NA	NA	NA
WP_160180151.1\|2060748_2061099_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	1.0e-50	79.3
WP_136346206.1\|2061256_2061754_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	3.3e-63	72.6
WP_136346205.1\|2061757_2063509_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	9.7e-259	71.6
WP_136346204.1\|2063519_2063705_+	hypothetical protein	A0A1B5FP99	Escherichia_phage	9.9e-13	59.3
WP_136346203.1\|2063704_2064934_+\|portal	phage portal protein	U5P411	Shigella_phage	1.3e-204	82.7
WP_016150486.1\|2064920_2065574_+\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	2.3e-104	85.5
WP_016150485.1\|2065587_2066796_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	6.2e-188	82.9
WP_048221283.1\|2067121_2067445_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	8.6e-20	49.0
WP_142972778.1\|2067454_2067793_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	7.3e-38	67.9
WP_086539186.1\|2067789_2068239_+	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	5.0e-66	85.9
WP_048221286.1\|2068235_2068583_+	DUF3168 domain-containing protein	A0A220NRP0	Escherichia_phage	8.3e-45	75.7
WP_167736270.1\|2068640_2069345_+\|tail	phage tail protein	K7PHL2	Enterobacterial_phage	1.8e-91	73.1
WP_016150478.1\|2069372_2069762_+	hypothetical protein	K7PKV6	Enterobacterial_phage	1.6e-57	84.5
WP_167736271.1\|2069770_2070049_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.4e-41	92.4
WP_167736272.1\|2070105_2070441_+	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	5.2e-44	78.4
WP_167736273.1\|2070487_2073799_+\|tail	phage tail tape measure protein	S4TTF9	Salmonella_phage	0.0e+00	80.6
WP_079934714.1\|2073841_2074102_+	DUF1327 domain-containing protein	Q5G8W5	Enterobacteria_phage	5.5e-17	60.5
WP_079934715.1\|2074106_2074394_-	hypothetical protein	I6S632	Salmonella_phage	3.6e-38	85.3
WP_167736274.1\|2074556_2075150_+	hypothetical protein	S4TSP7	Salmonella_phage	1.2e-107	95.9
WP_038642083.1\|2075149_2075734_+	hypothetical protein	S4TND4	Salmonella_phage	6.0e-104	96.4
WP_167736275.1\|2075740_2076139_+	hypothetical protein	S4TR39	Salmonella_phage	7.2e-69	93.2
WP_167736276.1\|2076138_2078862_+	DUF1983 domain-containing protein	S4TTF5	Salmonella_phage	0.0e+00	94.7
WP_167736277.1\|2078864_2079809_+	hypothetical protein	H6WRW5	Salmonella_phage	1.2e-117	65.5
WP_167736278.1\|2079818_2081240_+\|tail	phage tail protein	A0A1V0E5M2	Salmonella_phage	4.7e-110	50.1
WP_000497432.1\|2081378_2081621_-	DinI family protein	Q6UAW0	Klebsiella_phage	3.4e-29	76.6
WP_130714570.1\|2081699_2082089_+	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	3.9e-51	72.9
2084757:2084880	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2712446 : 2720021

Staphylococcus_phage(14.29%)

integrase,transposase

attL 2702354:2702412|attR 2718083:2718141

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2702354:2702412	attL	NA	NA	NA	NA
WP_075335826.1\|2712446_2713607_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	6.0e-39	36.4
WP_167736301.1\|2713695_2714469_-	hypothetical protein	G9IA57	Pseudomonas_phage	6.6e-34	39.1
WP_087451024.1\|2714481_2715601_+\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_088902366.1\|2715855_2716863_-	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	4.2e-57	36.0
WP_088902367.1\|2716846_2717425_-	S-adenosylmethionine-binding protein	A0A193GYV6	Enterobacter_phage	2.9e-79	71.7
WP_088902368.1\|2717764_2718082_+\|integrase	tyrosine-type recombinase/integrase	A0A0U2JGI6	Escherichia_phage	2.7e-26	57.0
WP_088902369.1\|2718559_2719282_+	solute-binding protein	NA	NA	NA	NA
2718083:2718141	attR	NA	NA	NA	NA
WP_003836510.1\|2719268_2720021_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	6.7e-07	30.8

DBSCAN-SWA_7

2803800 : 2813838

Cedratvirus(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003836641.1\|2803800_2804580_+	heme ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	7.9e-11	26.7
WP_048216528.1\|2804576_2806019_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	7.7e-52	35.3
WP_003836643.1\|2806080_2806794_-	EAL domain-containing protein	NA	NA	NA	NA
WP_003836644.1\|2807110_2807575_-	lipoprotein nlpC	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
WP_003030567.1\|2807652_2808402_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	30.3
WP_003030569.1\|2808401_2808953_-	glutathione peroxidase	NA	NA	NA	NA
WP_003832584.1\|2809013_2809994_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	6.7e-15	24.8
WP_003030571.1\|2810147_2810447_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_003030574.1\|2810451_2812839_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003832580.1\|2812854_2813838_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5

DBSCAN-SWA_8

2817782 : 2864126

Cronobacter_phage(28.57%)

integrase,capsid,holin,lysis

attL 2817417:2817439|attR 2864307:2864329

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2817417:2817439	attL	NA	NA	NA	NA
WP_167736303.1\|2817782_2818145_+	GtrA family protein	U5P0S6	Shigella_phage	1.7e-48	80.8
WP_167736304.1\|2818141_2819068_+	glycosyltransferase	M1FQW5	Enterobacteria_phage	4.3e-157	89.8
WP_167736305.1\|2819064_2820498_+	hypothetical protein	NA	NA	NA	NA
WP_167736306.1\|2820564_2822295_-	hypothetical protein	E1XTH9	Salmonella_phage	5.5e-137	52.2
WP_167736307.1\|2822353_2824831_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	0.0e+00	87.5
WP_167736308.1\|2824817_2825210_-	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	4.0e-64	87.9
WP_167736309.1\|2825219_2825690_-	hypothetical protein	F1C5F1	Cronobacter_phage	2.6e-78	91.7
WP_167736310.1\|2825689_2826187_-	hypothetical protein	F1C5F0	Cronobacter_phage	5.1e-88	90.3
WP_167736396.1\|2826186_2828514_-	tape measure protein	A0A1B1W284	Salmonella_phage	7.3e-145	51.7
WP_049003437.1\|2829297_2829969_-	hypothetical protein	G0ZNE7	Cronobacter_phage	7.7e-55	50.2
WP_049003435.1\|2830026_2830770_-	Ig domain-containing protein	F1C5E5	Cronobacter_phage	5.9e-72	86.7
WP_032608745.1\|2830832_2831216_-	hypothetical protein	F1C5E4	Cronobacter_phage	2.3e-40	64.6
WP_049003432.1\|2831212_2831677_-	hypothetical protein	A0A2P1MXA4	Escherichia_phage	3.1e-31	45.5
WP_049003430.1\|2831679_2832036_-	hypothetical protein	G0ZNE2	Cronobacter_phage	4.2e-28	58.1
WP_049003424.1\|2832187_2832358_-	hypothetical protein	A0A1V0E5P1	Salmonella_phage	1.7e-11	50.0
WP_049003423.1\|2832357_2832738_-	hypothetical protein	F1C5E2	Cronobacter_phage	4.5e-28	53.7
WP_152960162.1\|2832740_2832968_-	hypothetical protein	NA	NA	NA	NA
WP_049003420.1\|2832979_2834062_-	hypothetical protein	F1C5E1	Cronobacter_phage	7.6e-145	69.9
WP_049003418.1\|2834073_2834505_-	hypothetical protein	F1C5E0	Cronobacter_phage	3.8e-47	68.5
WP_049003417.1\|2834508_2835897_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	5.3e-151	59.4
WP_049003415.1\|2835968_2836481_-	hypothetical protein	NA	NA	NA	NA
WP_065241400.1\|2836521_2837526_-\|capsid	minor capsid protein	F1C5D8	Cronobacter_phage	9.3e-113	67.7
WP_152692361.1\|2837458_2838928_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	2.9e-155	60.2
WP_049003411.1\|2838938_2840501_-	hypothetical protein	G8C7P3	Escherichia_phage	1.4e-304	93.1
WP_049003408.1\|2840497_2841148_-	phage protein	G8C7P2	Escherichia_phage	3.8e-91	80.1
WP_049003406.1\|2841151_2841370_-	hypothetical protein	NA	NA	NA	NA
WP_049003405.1\|2841538_2841817_+	hypothetical protein	NA	NA	NA	NA
WP_049003464.1\|2841817_2842276_-\|lysis	lysis protein	A0A2H4FNE5	Salmonella_phage	4.9e-53	76.6
WP_167736311.1\|2842284_2842734_-	glycoside hydrolase family protein	A0A0M4R365	Salmonella_phage	4.0e-68	84.6
WP_122008274.1\|2842720_2843026_-\|holin	holin	E7C9S8	Salmonella_phage	1.1e-43	86.1
WP_049003324.1\|2843184_2843373_-	hypothetical protein	NA	NA	NA	NA
WP_049003320.1\|2843820_2844510_-	antiterminator	I6PDF8	Cronobacter_phage	1.3e-52	50.6
WP_049003316.1\|2844506_2844647_-	YlcG family protein	K7PHH3	Enterobacteria_phage	3.0e-06	74.2
WP_049003315.1\|2844643_2845255_-	protein ninG	A0A0M4RU10	Salmonella_phage	2.4e-39	50.2
WP_049003313.1\|2845247_2845916_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.3e-126	96.4
WP_049003311.1\|2845912_2846083_-	NinE family protein	K7P7K0	Enterobacteria_phage	3.8e-11	60.7
WP_049003308.1\|2846075_2846525_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	2.4e-36	51.4
WP_049003305.1\|2846978_2847236_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	8.0e-29	80.3
WP_049003300.1\|2847864_2848137_-	hypothetical protein	A0A220IH78	Escherichia_phage	2.6e-25	69.7
WP_167736312.1\|2848133_2848676_-	DUF551 domain-containing protein	A0A193GYX5	Enterobacter_phage	4.7e-10	45.6
WP_167736313.1\|2848672_2849320_-	hypothetical protein	Q1MVG0	Enterobacteria_phage	4.3e-111	82.6
WP_167736314.1\|2849867_2850167_-	protein ren	M1FPD5	Enterobacteria_phage	4.8e-17	52.6
WP_167736315.1\|2850168_2850858_-	phage replication protein	G8C7U6	Escherichia_phage	4.7e-124	93.0
WP_167736316.1\|2850854_2851796_-	replication protein	A5VW95	Enterobacteria_phage	2.4e-54	80.2
WP_167736317.1\|2851981_2852524_-	regulator	M9NZI6	Enterobacteria_phage	3.8e-89	93.9
WP_032936025.1\|2852554_2852782_-	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	9.2e-37	98.7
WP_032936028.1\|2852892_2853597_+	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	5.2e-86	64.6
WP_167736318.1\|2853611_2854301_+	hypothetical protein	NA	NA	NA	NA
WP_167736319.1\|2855162_2855360_+	hypothetical protein	NA	NA	NA	NA
WP_167736320.1\|2855493_2856057_+	hypothetical protein	A5PJ37	Escherichia_virus	6.5e-23	38.2
WP_160180348.1\|2856092_2856473_+	hypothetical protein	NA	NA	NA	NA
WP_167736321.1\|2856624_2856834_+	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	7.0e-31	89.9
WP_167736322.1\|2856904_2857876_+	hypothetical protein	M9P0E1	Enterobacteria_phage	1.3e-42	59.8
WP_160180351.1\|2857883_2858168_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	4.7e-46	90.4
WP_160180352.1\|2858185_2858932_+	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	1.8e-65	65.8
WP_160180354.1\|2858928_2859546_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	1.2e-59	57.8
WP_160180356.1\|2859542_2859971_+	regulator	M9NYX4	Enterobacteria_phage	1.7e-71	95.1
WP_160180358.1\|2859967_2860120_+	DUF1317 family protein	T1SAR0	Salmonella_phage	3.6e-05	44.2
WP_167736323.1\|2860116_2860668_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	2.0e-53	58.4
WP_163199154.1\|2860664_2860883_+	hypothetical protein	NA	NA	NA	NA
WP_163199152.1\|2860980_2861199_+	hypothetical protein	NA	NA	NA	NA
WP_163199150.1\|2861195_2861417_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	6.3e-14	54.5
WP_163199148.1\|2861416_2861830_+	DUF2591 family protein	G0ZNC2	Cronobacter_phage	3.6e-23	53.2
WP_163199146.1\|2861792_2862032_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	1.3e-09	45.5
WP_163199144.1\|2862041_2862233_+	hypothetical protein	NA	NA	NA	NA
WP_163199143.1\|2862242_2862617_+	hypothetical protein	A0A0P0ZB93	Stx2-converting_phage	1.4e-34	61.4
WP_032936075.1\|2862723_2862960_+	hypothetical protein	A0A1P8DTG1	Proteus_phage	3.3e-13	53.7
WP_167736324.1\|2862917_2864126_-\|integrase	tyrosine-type recombinase/integrase	I6R9B6	Salmonella_phage	1.1e-181	76.9
2864307:2864329	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2955185 : 2960955

uncultured_Caudovirales_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088902418.1\|2955185_2955680_-	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	3.4e-07	32.4
WP_003030760.1\|2956561_2956987_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	7.3e-51	70.7
WP_016150088.1\|2956999_2958289_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	3.2e-166	70.4
WP_003030762.1\|2958333_2958654_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	3.2e-19	44.8
WP_008320415.1\|2958739_2959438_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.8e-89	68.1
WP_003840850.1\|2959825_2960068_+	DinI family protein	Q6UAW0	Klebsiella_phage	1.5e-29	77.9
WP_003030767.1\|2960157_2960667_+	hypothetical protein	NA	NA	NA	NA
WP_096878644.1\|2960802_2960955_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.1e-20	94.0

DBSCAN-SWA_10

3252689 : 3318277

Salmonella_phage(65.38%)

integrase,capsid,transposase,tRNA,terminase,head,plate,portal,tail,lysis

attL 3282611:3282628|attR 3316744:3316761

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088902490.1\|3252689_3253982_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.8e-93	48.2
WP_003836910.1\|3254074_3255418_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	4.3e-81	40.8
WP_003831898.1\|3255428_3256040_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_136345709.1\|3256151_3260213_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.9e-88	49.2
WP_002439523.1\|3260347_3260842_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_003035727.1\|3261389_3262358_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.9e-62	44.3
WP_088902491.1\|3262472_3264239_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	1.4e-23	26.2
WP_003847023.1\|3264239_3265961_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	8.1e-16	23.6
WP_032948928.1\|3266005_3266710_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_002211347.1\|3266995_3267214_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_003847025.1\|3267293_3268205_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003847027.1\|3268313_3269174_+	pirin family protein	NA	NA	NA	NA
WP_016149852.1\|3269190_3269868_+	isochorismatase family protein	NA	NA	NA	NA
WP_044701666.1\|3270788_3271916_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	1.6e-28	27.4
WP_003035378.1\|3271957_3272446_-	YbjO family protein	NA	NA	NA	NA
WP_003035376.1\|3272505_3273351_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_003035374.1\|3273347_3274301_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_003035373.1\|3274310_3275444_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	1.1e-29	34.9
WP_003035370.1\|3275582_3276695_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_003035368.1\|3277128_3277605_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_003836932.1\|3277695_3278598_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.0e-37	34.0
WP_003836934.1\|3278657_3279380_-	nitroreductase NfsA	NA	NA	NA	NA
WP_003845523.1\|3279363_3279654_-	YbjC family protein	NA	NA	NA	NA
WP_003035358.1\|3279826_3280090_+	glutaredoxin, GrxA family	A0A2I7SAE2	Vibrio_phage	3.8e-26	67.9
WP_003035356.1\|3280124_3280505_-	membrane protein	NA	NA	NA	NA
WP_003035354.1\|3280774_3282460_+	aspartate:alanine antiporter	NA	NA	NA	NA
3282611:3282628	attL	NA	NA	NA	NA
WP_150344849.1\|3282695_3283043_-	hypothetical protein	NA	NA	NA	NA
WP_058842448.1\|3283070_3283286_-	late control protein B	Q53ZE7	Salmonella_virus	3.6e-22	70.8
WP_167736336.1\|3283353_3284454_-	phage late control D family protein	E5G6Q3	Salmonella_phage	9.6e-188	94.3
WP_167736337.1\|3284450_3284936_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.9e-65	96.9
WP_167736338.1\|3284932_3287707_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	1.0e-116	42.3
WP_167736339.1\|3287699_3287819_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	3.3e-14	92.3
WP_032233623.1\|3287833_3288136_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	1.5e-42	94.9
WP_024552851.1\|3288190_3288706_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	5.1e-91	98.2
WP_048232591.1\|3288715_3289888_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.2e-213	94.6
WP_080700401.1\|3290127_3290379_-	hypothetical protein	A0A0F7LDZ0	Escherichia_phage	2.4e-22	68.5
WP_048232592.1\|3290371_3290653_-	hypothetical protein	NA	NA	NA	NA
WP_001397640.1\|3292346_3292952_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	4.6e-115	98.0
WP_167736340.1\|3292944_3293853_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.2e-147	92.7
WP_048232594.1\|3293839_3294199_-\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	3.0e-58	95.8
WP_167736341.1\|3294195_3294774_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.6e-104	95.3
WP_016150805.1\|3294842_3295289_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	4.2e-65	88.4
WP_167736342.1\|3295281_3295713_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	5.8e-72	94.4
WP_167736343.1\|3295808_3296237_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	1.3e-63	94.3
WP_000871620.1\|3296233_3296608_-	hypothetical protein	NA	NA	NA	NA
WP_167736344.1\|3296612_3297122_-	glycoside hydrolase family protein	A0A1S6KZY9	Salmonella_phage	1.7e-91	96.4
WP_000171565.1\|3297102_3297318_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_000868184.1\|3297321_3297525_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_057068446.1\|3297524_3297989_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	4.2e-84	97.4
WP_000059173.1\|3298082_3298733_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	4.9e-115	100.0
WP_048232602.1\|3298736_3299801_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	2.3e-194	98.3
WP_048232604.1\|3299817_3300651_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	1.6e-126	94.6
WP_167736345.1\|3300793_3302560_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	94.4
WP_167736346.1\|3302559_3303285_+\|terminase	terminase-like family protein	E5FFI8	Burkholderia_phage	3.8e-23	33.3
WP_167736347.1\|3303281_3304322_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.8e-175	89.1
WP_016242316.1\|3304372_3304711_-	STAS-like domain-containing protein	NA	NA	NA	NA
WP_016242317.1\|3304710_3305691_-	hypothetical protein	A4PE73	Ralstonia_virus	8.9e-52	42.8
WP_019077493.1\|3305931_3306192_-	hypothetical protein	J9Q7T5	Salmonella_phage	9.0e-20	60.3
WP_019077494.1\|3306265_3306499_-	DinI family protein	A0A1S6L014	Salmonella_phage	1.1e-32	90.9
WP_001154444.1\|3306510_3306699_-	hypothetical protein	A0A1S6L006	Salmonella_phage	2.7e-26	100.0
WP_167736348.1\|3306857_3309266_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	94.8
WP_167736349.1\|3309256_3310114_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L011	Salmonella_phage	4.2e-130	80.0
WP_016150819.1\|3310110_3310338_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	3.3e-34	92.0
WP_167736350.1\|3310337_3310571_-	DUF2732 family protein	A0A1S6L021	Salmonella_phage	4.1e-32	96.1
WP_167736351.1\|3310638_3310980_-	hypothetical protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
WP_167736352.1\|3310943_3311144_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	3.9e-31	95.5
WP_087451024.1\|3311243_3312363_+\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_167736353.1\|3312373_3312886_-	hypothetical protein	A0A1S6L008	Salmonella_phage	3.2e-85	98.2
WP_012016743.1\|3312918_3313140_-	hypothetical protein	NA	NA	NA	NA
WP_167736354.1\|3313235_3313832_+	hypothetical protein	A0A1S6KZZ7	Salmonella_phage	3.6e-40	42.5
WP_167736355.1\|3313852_3315529_+	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	1.3e-79	66.0
WP_130997529.1\|3315611_3316664_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.0e-106	55.9
WP_088902493.1\|3317065_3318277_+	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	6.6e-190	89.9
3316744:3316761	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP042526

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2110 : 49780

Escherichia_phage(23.08%)

protease,integrase,transposase

attL 8311:8325|attR 54671:54685

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067834.1\|2110_2815_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_000219391.1\|2936_3842_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000004159.1\|3838_5077_+	MFS transporter	NA	NA	NA	NA
WP_001137892.1\|5076_5661_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|6153_6918_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000130000.1\|7144_7450_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|7460_8666_-	chromate efflux transporter	NA	NA	NA	NA
8311:8325	attL	NA	NA	NA	NA
WP_000427614.1\|8893_9898_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_004883563.1\|10079_10352_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|10479_11319_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_012695489.1\|11809_12454_+	quinolone resistance pentapeptide repeat protein QnrB2	NA	NA	NA	NA
WP_003833285.1\|12495_12948_-	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_000050481.1\|14254_15796_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|16200_17040_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|17033_17381_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000186237.1\|17537_18170_-	type B-3 chloramphenicol O-acetyltransferase CatB3	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
WP_003159191.1\|18264_18819_-	aminoglycoside N-acetyltransferase AAC(6')-Ib4	NA	NA	NA	NA
WP_015063357.1\|18945_19278_-	quaternary ammonium compound efflux SMR transporter QacG2	NA	NA	NA	NA
WP_015060105.1\|19509_20250_-	subclass B1 metallo-beta-lactamase IMP-4	NA	NA	NA	NA
WP_000845039.1\|20402_21416_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001067834.1\|21690_22395_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_000557454.1\|22627_23488_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_000587837.1\|23500_24043_+	AAA family ATPase	NA	NA	NA	NA
WP_000951934.1\|24524_24716_-	hypothetical protein	NA	NA	NA	NA
WP_001330846.1\|24721_24967_+	hypothetical protein	NA	NA	NA	NA
WP_000080861.1\|25017_26154_+	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_000971921.1\|26268_27639_+\|transposase	IS1182-like element ISCfr1 family transposase	NA	NA	NA	NA
WP_000027057.1\|28459_29320_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_011091091.1\|29988_30498_-	transcriptional regulator	NA	NA	NA	NA
WP_011091092.1\|30545_32633_-	hypothetical protein	NA	NA	NA	NA
WP_012579091.1\|32645_33596_-	DsbC family protein	NA	NA	NA	NA
WP_045626305.1\|33606_34869_-	hypothetical protein	NA	NA	NA	NA
WP_077256341.1\|34913_35189_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_045626302.1\|35413_35797_-	DUF1496 domain-containing protein	NA	NA	NA	NA
WP_011091025.1\|35876_36530_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011091026.1\|36622_36880_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_015243648.1\|36812_37214_+	mRNA interferase PemK	NA	NA	NA	NA
WP_011091030.1\|37558_37993_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	4.7e-29	55.4
WP_011091031.1\|37941_39246_+	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	1.2e-112	50.8
WP_015058924.1\|39268_40117_-	3'-5' exonuclease	A0A1D9C9N8	Salinivibrio_phage	5.0e-27	38.9
WP_004187415.1\|40119_40440_-	hypothetical protein	NA	NA	NA	NA
WP_050868822.1\|40584_40836_-	hypothetical protein	NA	NA	NA	NA
WP_004187413.1\|41291_41501_-	hypothetical protein	NA	NA	NA	NA
WP_011091034.1\|41503_41722_-	hypothetical protein	NA	NA	NA	NA
WP_011091035.1\|41766_42450_-	hypothetical protein	NA	NA	NA	NA
WP_011091036.1\|42446_42719_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012579093.1\|42736_44011_-	hypothetical protein	NA	NA	NA	NA
WP_011091038.1\|44537_44894_+	hypothetical protein	NA	NA	NA	NA
WP_011091039.1\|44871_45456_+	hypothetical protein	NA	NA	NA	NA
WP_011091040.1\|45452_46172_+	hypothetical protein	NA	NA	NA	NA
WP_012579094.1\|46333_46879_-	hypothetical protein	NA	NA	NA	NA
WP_011091042.1\|47019_47481_+	hypothetical protein	NA	NA	NA	NA
WP_004187394.1\|47477_47726_+	helix-turn-helix transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.6e-10	53.0
WP_011091043.1\|47718_48306_+	restriction endonuclease	NA	NA	NA	NA
WP_011091044.1\|48302_48788_+	hypothetical protein	NA	NA	NA	NA
WP_011091045.1\|48784_49033_+	hypothetical protein	NA	NA	NA	NA
WP_011091046.1\|49051_49780_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	9.3e-22	51.6
54671:54685	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042525

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP042524

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP042526

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection