CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP042551	Enterobacter hormaechei strain C45 chromosome, complete genome	4 crisprs	csa3,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK	1	10	7
NZ_CP042555	Enterobacter hormaechei strain C45 plasmid pC45_004, complete sequence	0 crisprs	NA	0	0	0
NZ_CP042552	Enterobacter hormaechei strain C45 plasmid pC45_001, complete sequence	0 crisprs	csa3	0	0	4
NZ_CP042554	Enterobacter hormaechei strain C45 plasmid pC45_003, complete sequence	0 crisprs	NA	0	0	0
NZ_CP042553	Enterobacter hormaechei strain C45 plasmid pC45_002, complete sequence	0 crisprs	NA	0	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042551_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042551_1

1729645-1730032

Unclear

I-F

Consensus_repeat	Method
GTTCACTGCCGGGCAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGGGCAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGGGCAGGCAGCTTAGAAA	CRT

6 spacers

The CRISPR arrays of NZ_CP042551_1

>merge|NZ_CP042551|1|1729645-1730032|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGGGCAGGCAGCTTAGAAATTACAGAAGCCACCAAAGGATAAGGGAGATGGGTTCACTGCCGGGCAGGCAGCTTAGAAAACCCGCTACCAAAGCACTCAGCCAAAGACAGAGTTCACTGCCGGGCAGGCAGCTTAGAAAAGCGTGTTCTTGAATCCTGCCAGACCATTAACGTTCACTGCCGGGCAGGCAGCTTAGAAATCTAACTGCCAGACTTCCTGGCTTTCTCCCTCGTTCACTGCCGGGCAGGCAGCTTAGAAATACGGCGACACCGACACGCGCCAGCGTGTTTTGTTCACTGCCGGGCAGGCAGCTTAGAAATCTTGCCTGATTTGCTCATGCCTTTAGTCACGGTTCACTGCCGTACAGGCCGTAGGCACA

>NZ_CP042551|1|1|1729645-1729972|PILER-CR
GTTCACTGCCGGGCAGGCAGCTTAGAAA	TTACAGAAGCCACCAAAGGATAAGGGAGATGG
GTTCACTGCCGGGCAGGCAGCTTAGAAA	ACCCGCTACCAAAGCACTCAGCCAAAGACAGA
GTTCACTGCCGGGCAGGCAGCTTAGAAA	AGCGTGTTCTTGAATCCTGCCAGACCATTAAC
GTTCACTGCCGGGCAGGCAGCTTAGAAA	TCTAACTGCCAGACTTCCTGGCTTTCTCCCTC
GTTCACTGCCGGGCAGGCAGCTTAGAAA	TACGGCGACACCGACACGCGCCAGCGTGTTTT
GTTCACTGCCGGGCAGGCAGCTTAGAAA

>NZ_CP042551|1|1|1729645-1730032|CRISPRCasFinder
GTTCACTGCCGGGCAGGCAGCTTAGAAA	TTACAGAAGCCACCAAAGGATAAGGGAGATGG
GTTCACTGCCGGGCAGGCAGCTTAGAAA	ACCCGCTACCAAAGCACTCAGCCAAAGACAGA
GTTCACTGCCGGGCAGGCAGCTTAGAAA	AGCGTGTTCTTGAATCCTGCCAGACCATTAAC
GTTCACTGCCGGGCAGGCAGCTTAGAAA	TCTAACTGCCAGACTTCCTGGCTTTCTCCCTC
GTTCACTGCCGGGCAGGCAGCTTAGAAA	TACGGCGACACCGACACGCGCCAGCGTGTTTT
GTTCACTGCCGGGCAGGCAGCTTAGAAA	TCTTGCCTGATTTGCTCATGCCTTTAGTCACG
GTTCACTGCCGTACAGGCCGTAGGCACA

>NZ_CP042551|1|1|1729645-1730032|CRT
GTTCACTGCCGGGCAGGCAGCTTAGAAA	TTACAGAAGCCACCAAAGGATAAGGGAGATGG
GTTCACTGCCGGGCAGGCAGCTTAGAAA	ACCCGCTACCAAAGCACTCAGCCAAAGACAGA
GTTCACTGCCGGGCAGGCAGCTTAGAAA	AGCGTGTTCTTGAATCCTGCCAGACCATTAAC
GTTCACTGCCGGGCAGGCAGCTTAGAAA	TCTAACTGCCAGACTTCCTGGCTTTCTCCCTC
GTTCACTGCCGGGCAGGCAGCTTAGAAA	TACGGCGACACCGACACGCGCCAGCGTGTTTT
GTTCACTGCCGGGCAGGCAGCTTAGAAA	TCTTGCCTGATTTGCTCATGCCTTTAGTCACG
GTTCACTGCCGTACAGGCCGTAGGCACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042551.1\|WP_017384842.1\|1738091_1739207_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP042551.1\|WP_017384852.1\|1724053_1725067_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP042551.1\|WP_017693708.1\|1735320_1736979_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP042551.1\|WP_017384848.1\|1730481_1731450_-\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP042551.1\|WP_032647865.1\|1727646_1729365_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP042551.1\|WP_032647854.1\|1716051_1717185_+\|general-secretion-pathway-protein-GspL	unknown	unknown	gnl\|CDD\|273768
NZ_CP042551.1\|WP_032647870.1\|1739203_1741144_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP042551.1\|WP_023303380.1\|1717663_1718461_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP042551.1\|WP_032647856.1\|1718715_1721418_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|119365
NZ_CP042551.1\|WP_026080729.1\|1734333_1735029_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP042551.1\|WP_017384849.1\|1730263_1730470_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042551.1\|WP_032647861.1\|1725159_1726596_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
NZ_CP042551.1\|WP_017693707.1\|1736975_1737932_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP042551.1\|WP_017384857.1\|1717181_1717667_+\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
NZ_CP042551.1\|WP_032647863.1\|1726606_1727608_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP042551.1\|WP_017384847.1\|1731460_1733113_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP042551.1\|WP_032647858.1\|1722095_1723907_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|381595
NZ_CP042551.1\|WP_015570988.1\|1733257_1734157_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP042551.1\|WP_006809408.1\|1741214_1741436_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP042551.1\|WP_017384854.1\|1721520_1721961_+\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228

Protein	Function_ID	Function_description	E-value
NZ_CP042551.1\|WP_017384842.1\|1738091_1739207_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP042551.1\|WP_017384852.1\|1724053_1725067_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.05058e-52
NZ_CP042551.1\|WP_017693708.1\|1735320_1736979_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP042551.1\|WP_017384848.1\|1730481_1731450_-\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP042551.1\|WP_032647865.1\|1727646_1729365_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP042551.1\|WP_032647854.1\|1716051_1717185_+\|general-secretion-pathway-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	1.2395e-39
NZ_CP042551.1\|WP_032647870.1\|1739203_1741144_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP042551.1\|WP_023303380.1\|1717663_1718461_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.87481e-40
NZ_CP042551.1\|WP_032647856.1\|1718715_1721418_+\|PKD-domain-containing-protein	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	1.36991e-124
NZ_CP042551.1\|WP_026080729.1\|1734333_1735029_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146
NZ_CP042551.1\|WP_032647861.1\|1725159_1726596_-\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.29487e-142
NZ_CP042551.1\|WP_017693707.1\|1736975_1737932_-\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.82706e-128
NZ_CP042551.1\|WP_017384857.1\|1717181_1717667_+\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	2.13746e-29
NZ_CP042551.1\|WP_032647863.1\|1726606_1727608_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP042551.1\|WP_017384847.1\|1731460_1733113_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP042551.1\|WP_032647858.1\|1722095_1723907_+\|PKD-domain-containing-protein	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	2.63751e-71
NZ_CP042551.1\|WP_015570988.1\|1733257_1734157_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.69399e-117
NZ_CP042551.1\|WP_006809408.1\|1741214_1741436_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
NZ_CP042551.1\|WP_017384854.1\|1721520_1721961_+\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	5.32861e-87

>NZ_CP042551.1|WP_032647865.1|1727646_1729365_-|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEEKTDRKFLDKALSDYSDARKGLDDLAKPSEKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDDALQRAFAIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>NZ_CP042551.1|WP_032647863.1|1726606_1727608_-|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGTLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVIRHDTNMLFVRVGDEHAAALGDFMKARGVLINASPVVRLVMHLDVNREQLTEVVKHWQAFLQR
>NZ_CP042551.1|WP_032647861.1|1725159_1726596_-|SDR-family-oxidoreductase
MPQRILVLGASGYIGQHLTTALSQQGHQVLAAARNTERLQKLHLPGVTCHNVDLNWPKALPALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDALRQTPVKQVIFLSSLQAPEHEQSDHLRARQLTAETLRSAHIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAEQHRVLEAAGPEVLSYQAQFEHFMRVSGRRRWLIPIPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDRALRALIPQELIRFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTSASLAALWEVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAHPWLKVGDTVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDNGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEQKQEGN
>NZ_CP042551.1|WP_017384852.1|1724053_1725067_-|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIVSLDEGIVRTAAWLRDHGKLHR
>NZ_CP042551.1|WP_032647858.1|1722095_1723907_+|PKD-domain-containing-protein
MNKRTLLSVLIAGACVAPLMAQAANLKETSSEPYTIKASDLAKKEKELTDFPLMASVKETIQTLDNAQVELIEPGRAANPDNVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVMGCANMKQFDEGGAGALKIYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKDGDYSKCVQHFFNVKIVNDEGSSETPDETPVTPTPTPSDDETPAPTPTPDETPVVVNHAPVAQIAGPIGAVEAGAQVSLSAEGSTDPDGNKLTYTWRSQDGQTVSGQDKAVVTFTAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNNSPTYYEPGAGLAWAEAWTAL
>NZ_CP042551.1|WP_017384854.1|1721520_1721961_+|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQSALANCWNKAAHYYHVDPYLLYAIANVESGMNPYAVGQNRDGTRDVGLMQINSSHFTALESRGIDEYRLITEPCTSIMVGASILAGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARY
>NZ_CP042551.1|WP_032647856.1|1718715_1721418_+|PKD-domain-containing-protein
MKFMKPKYLALFIAAATSSAFAAAPGAPTIGYGNDKFALVEVDQAAQDYNNLVKVHNDGVDVKVEWNVWSGDAPTSAKVLLDGQTVWTGAAGATGSATFKVKKGGRYQEQVEVCNASGCAKSASKLIIVADTDGSHLLPLNTSLKENNKAFAKHTDKVVAAYFPEWGVYDRNFPVDKIPAANLNHILYGFIPICGGDGINDGLKTIEGGNSFRVLQNDCKGRPDYTVAIHDPWAALQKPQAGVSGWDDPYKGNFGQLMALKKAHPDLKVLPSIGGWTLSDPFFHMGDPAIRARFVSSVKEFLQTWKFFDGVDIDWEFPGGGGVSENLGNPQQDKATYTALMHDLRTMLNELSAQTGRTYELTSAIGAGRDKIEDVDYTAAQQYLDHIFLMSYDFYGGWSNTVLGHQAALRAPAWRPDTDYTTENGVNALLSQGVQPGKIVVGAGMYGRGWTGVHGYTGNNPFTGTATGMVKGTWEPGVVDYRQIVNEYKGKPGWEYGYDADAEAPYVFNKTTGDLITYEDARSTTAKGKYVLANKLGGLFAWSIDSDTGDILNAMNESLLGGDATPVDPVVTNHAPIASSADQNVSGPVTVTLDGSASSDPDGDAITYKWTQVSGPSVTITNSTKAKATFNVAAATSDQTMVFRLTVTDAKGLSNAIDIQVVNKAPKANQAPVLNPMEAITLESGETYALHAQAADPDGDALTYAWSVPADMHATGSDSANVNITAPEVSSTSTYTLSVVVSDGKTSVQSNVQVTVNPKAAPAPVPDDEDTNPADDVTPPADDVTPPSDKGSCDAPVDANASKYAAWESSKIYNGGDTVSFDHLVWKAKYWTQGNQPGFGVDAWELVSNVKMNWRSDLVYNGGDTTTYEGNVYRAKWWTRGDNPANSDVWVKEGASTDCK
>NZ_CP042551.1|WP_023303380.1|1717663_1718461_+|prepilin-peptidase
MNTFSLMRDAFPVGFPIMSAILGGIVGSFLGVVAERVPGMVMDEEGSGNLLFPASNCPVCQHALAAWENIPLLSWLLLRGRCHQCGSAIPLRLFLVELISALFFGITAWCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLITGREGLGYGDFKLLAALGAWCGWQVLPSIELAAALSGIVGYFAVNNLNKNNLTISFGPYLAFAGIVVFMSQQFAFTF
>NZ_CP042551.1|WP_017384857.1|1717181_1717667_+|type-II-secretion-system-protein-M
MKERIAQLKSRYQNYSTREKIILKICAVAIVGAVVYYTGVIPLDNMIQNSKSTLKRQKETLNWMRSEIDKNHLQVQIVKTNNPRTVVENSAHEINLSLTDMRQEGQTLSFVLNRVNVYELRSWLREINQTSGVRLQKINLTPVDHLSDVKAQVQLTWSKNA
>NZ_CP042551.1|WP_032647854.1|1716051_1717185_+|general-secretion-pathway-protein-GspL
MKQVLFVRPDSREGGKIMWCESGSERVEVVDSLEMLAEHPLATRVCLLLPASDMIFRHFTLPKKVASQAMAFSWMAEETLIGDVDNLHWTVLHKKGADVDAVAIDADRLRAALTRCQEAGLNVIQALPDAWLLPVTTGGSTLVAQDDSYWLRLSPHVAGEMEATLLPLLMQKAGVGEVWCYGDAPAKVHVDVQHAWQHPLALIQPQWQTCRVNLLHGEFSLKAGHGRAAKSMKAAMVAVGVLSVALLLGPRIAMAWMLVQQENRVQEEIVQVYQHHFPSMRQQTNIKYHFGQSLKKQSKGFFLQLDELENARQSVPAMEIELLEYDAQQNTLTLSVSAQNQPALQAFVNQTSENFDFTLQPVSTTEPYTAMIAGKHK
>NZ_CP042551.1|WP_017384849.1|1730263_1730470_+|hypothetical-protein
MRWPAWAKSPVALTLTGPTGVTKAYALACMGKKPGGADAYRAYRVPKANALACMGKKPGGVDAYRAYR
>NZ_CP042551.1|WP_017384848.1|1730481_1731450_-|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIHQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSEWLTRDVKRGDYIWLSDAQGEFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNATHGFVAGRLSRELLQSVPDIANRIVMTCGPAPYMEIVEKEVKALGVTRFFKEQFFTPVAEAATSGMKFTKLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>NZ_CP042551.1|WP_017384847.1|1731460_1733113_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGIVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNAIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAILNEKFGLRSVTNVEDDMKQLLSA
>NZ_CP042551.1|WP_015570988.1|1733257_1734157_-|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSLAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>NZ_CP042551.1|WP_026080729.1|1734333_1735029_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>NZ_CP042551.1|WP_017693708.1|1735320_1736979_+|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>NZ_CP042551.1|WP_017693707.1|1736975_1737932_-|DUF535-domain-containing-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLDALNDHYEMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR
>NZ_CP042551.1|WP_017384842.1|1738091_1739207_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>NZ_CP042551.1|WP_032647870.1|1739203_1741144_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLEERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLLDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP042551.1|WP_006809408.1|1741214_1741436_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA

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Crispr_ID: NZ_CP042551_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042551_2

1747282-1748151

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTGCAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CRT

14 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP042551_2

>merge|NZ_CP042551|2|1747282-1748151|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTGCAGGCAGCTTAGAAATGATGCAAGATAACACCGCCACTATGACGATGGTTCACTGCCGTGCAGGCAGCTTAGAAATCCATTATACGCATTGGGCCTAGTACGTCAAATTTCACTGCCGTGCAGGCAGCTTAGAAACTATACCGCGGGCGGTGATTATTTCCCTTTTCGTTCACTGCCGTGCAGGCAGCTTAGAAAGCACTGTTTAATGATCAACGGCCTGTAGCGTTGTTCACTGCCGTGCAGGCAGCTTAGAAACATTGATCGCACAAAGAAACTTCCAGATGGAGCGTTCACTGCCGTGCAGGCAGCTTAGAAATGCGGTAATTGTCGGTACCGGTTCAGTGACTTGTTCACTGCCGTGCAGGCAGCTTAGAAATCGTCAGCATCATCAGGCGCTTCTGAGGGCTTGTTCACTGCCGTGCAGGCAGCTTAGAAATTCGCCAAAGCGCTGGCCGTCCATAACGATGATGTTCACTGCCGTGCAGGCAGCTTAGAAATTGCGGGGTGGCGGGATTCCGAGCACCCGCATGTTCACTGCCGTGCAGGCAGCTTAGAAACATGCCGCGGAGTAACTAACGTGATATCCCTTGTTCACTGCCGTGCAGGCAGCTTAGAAACATAGCCTTGCTGATGATTGACTCAGCCCATTGTTCACTGCCGTGCAGGCAGCTTAGAAAGATAACGATCCCCCAGACGACTGAAGAGCTCAGTTCACTGCCGTGCAGGCAGCTTAGAAATCTATTTTCCCAGTCAAGGTAAACAGATAACCGTTCACTGCCGTGCAGGCAGCTTAGAAAGCAACCGCATTGGCCCTGCTTATCACCATGTTGTTCACCACCGTACAGGCAGCATACTCC

>NZ_CP042551|2|2|1747282-1748091|PILER-CR
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGATGCAAGATAACACCGCCACTATGACGATG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCCATTATACGCATTGGGCCTAGTACGTCAAA
TTTCACTGCCGTGCAGGCAGCTTAGAAA	CTATACCGCGGGCGGTGATTATTTCCCTTTTC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GCACTGTTTAATGATCAACGGCCTGTAGCGTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATTGATCGCACAAAGAAACTTCCAGATGGAGC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGCGGTAATTGTCGGTACCGGTTCAGTGACTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCGTCAGCATCATCAGGCGCTTCTGAGGGCTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTCGCCAAAGCGCTGGCCGTCCATAACGATGAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTGCGGGGTGGCGGGATTCCGAGCACCCGCAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATGCCGCGGAGTAACTAACGTGATATCCCTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATAGCCTTGCTGATGATTGACTCAGCCCATT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GATAACGATCCCCCAGACGACTGAAGAGCTCA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCTATTTTCCCAGTCAAGGTAAACAGATAACC
GTTCACTGCCGTGCAGGCAGCTTAGAAA

>NZ_CP042551|2|2|1747282-1748151|CRISPRCasFinder
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGATGCAAGATAACACCGCCACTATGACGATG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCCATTATACGCATTGGGCCTAGTACGTCAAA
TTTCACTGCCGTGCAGGCAGCTTAGAAA	CTATACCGCGGGCGGTGATTATTTCCCTTTTC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GCACTGTTTAATGATCAACGGCCTGTAGCGTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATTGATCGCACAAAGAAACTTCCAGATGGAGC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGCGGTAATTGTCGGTACCGGTTCAGTGACTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCGTCAGCATCATCAGGCGCTTCTGAGGGCTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTCGCCAAAGCGCTGGCCGTCCATAACGATGAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTGCGGGGTGGCGGGATTCCGAGCACCCGCAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATGCCGCGGAGTAACTAACGTGATATCCCTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATAGCCTTGCTGATGATTGACTCAGCCCATT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GATAACGATCCCCCAGACGACTGAAGAGCTCA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCTATTTTCCCAGTCAAGGTAAACAGATAACC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GCAACCGCATTGGCCCTGCTTATCACCATGTT
GTTCACCACCGTACAGGCAGCATACTCC

>NZ_CP042551|2|2|1747282-1748151|CRT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGATGCAAGATAACACCGCCACTATGACGATG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCCATTATACGCATTGGGCCTAGTACGTCAAA
TTTCACTGCCGTGCAGGCAGCTTAGAAA	CTATACCGCGGGCGGTGATTATTTCCCTTTTC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GCACTGTTTAATGATCAACGGCCTGTAGCGTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATTGATCGCACAAAGAAACTTCCAGATGGAGC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGCGGTAATTGTCGGTACCGGTTCAGTGACTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCGTCAGCATCATCAGGCGCTTCTGAGGGCTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTCGCCAAAGCGCTGGCCGTCCATAACGATGAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTGCGGGGTGGCGGGATTCCGAGCACCCGCAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATGCCGCGGAGTAACTAACGTGATATCCCTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATAGCCTTGCTGATGATTGACTCAGCCCATT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GATAACGATCCCCCAGACGACTGAAGAGCTCA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCTATTTTCCCAGTCAAGGTAAACAGATAACC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GCAACCGCATTGGCCCTGCTTATCACCATGTT
GTTCACCACCGTACAGGCAGCATACTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042551.1\|WP_017384842.1\|1738091_1739207_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP042551.1\|WP_032647881.1\|1754890_1755889_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP042551.1\|WP_032647882.1\|1755898_1756453_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP042551.1\|WP_032647875.1\|1745140_1745842_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042551.1\|WP_032647879.1\|1752634_1753945_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP042551.1\|WP_032647883.1\|1756475_1756949_-\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|227941
NZ_CP042551.1\|WP_032647870.1\|1739203_1741144_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP042551.1\|WP_023296216.1\|1756945_1757389_-\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
NZ_CP042551.1\|WP_032647878.1\|1749394_1752619_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP042551.1\|WP_072026006.1\|1744436_1744916_-\|type-VI-secretion-system-tube-protein-Hcp	unknown	unknown	gnl\|CDD\|213799
NZ_CP042551.1\|WP_006174393.1\|1741703_1742024_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP042551.1\|WP_032668747.1\|1758989_1759694_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP042551.1\|WP_032647873.1\|1744919_1745138_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042551.1\|WP_017693707.1\|1736975_1737932_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP042551.1\|WP_002211347.1\|1758486_1758705_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP042551.1\|WP_006809407.1\|1742051_1744331_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP042551.1\|WP_032647876.1\|1746660_1747104_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042551.1\|WP_032647880.1\|1753941_1754877_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|187867
NZ_CP042551.1\|WP_006809408.1\|1741214_1741436_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP042551.1\|WP_032647877.1\|1748414_1749398_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676

Protein	Function_ID	Function_description	E-value
NZ_CP042551.1\|WP_017384842.1\|1738091_1739207_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP042551.1\|WP_006809407.1\|1742051_1744331_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP042551.1\|WP_032647882.1\|1755898_1756453_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	4.7067e-93
NZ_CP042551.1\|WP_032647879.1\|1752634_1753945_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	2.70099e-166
NZ_CP042551.1\|WP_032647881.1\|1754890_1755889_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP042551.1\|WP_032647883.1\|1756475_1756949_-\|RES-domain-containing-protein	gnl\|CDD\|227941	COG5654, COG5654, Uncharacterized conserved protein [Function unknown].	4.73888e-27
NZ_CP042551.1\|WP_032647870.1\|1739203_1741144_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP042551.1\|WP_023296216.1\|1756945_1757389_-\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	2.89096e-48
NZ_CP042551.1\|WP_072026006.1\|1744436_1744916_-\|type-VI-secretion-system-tube-protein-Hcp	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	1.84805e-41
NZ_CP042551.1\|WP_006174393.1\|1741703_1742024_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP042551.1\|WP_032668747.1\|1758989_1759694_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.31126e-137
NZ_CP042551.1\|WP_032647880.1\|1753941_1754877_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	2.76788e-132
NZ_CP042551.1\|WP_017693707.1\|1736975_1737932_-\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.82706e-128
NZ_CP042551.1\|WP_002211347.1\|1758486_1758705_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
NZ_CP042551.1\|WP_032647878.1\|1749394_1752619_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP042551.1\|WP_006809408.1\|1741214_1741436_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
NZ_CP042551.1\|WP_032647877.1\|1748414_1749398_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0

>NZ_CP042551.1|WP_032647876.1|1746660_1747104_+|hypothetical-protein
MNMENQSISQLYSELSLNPDFPALVERCNLLTEILLDCHSLPQTQPVCRCLGAYLDVVKTELAESMSDFRVVEFDDEAERPKGNEWLLEDTEIKCDYCRALNHVLLVSHFDREMLPHLTGLLHDITHSMAADVVAPECGKPVIHIIN
>NZ_CP042551.1|WP_032647875.1|1745140_1745842_-|hypothetical-protein
MYYSEDIINKIGTDKELAIRLDKAMSGVKEEVIDYLNNLGDAATRLLYYSSCLTKNYHDVCTRLKDEDVRFVQGLGELVIHRNLIFRMIKIYIETVLKSKNEVEKKSILERLTLFTKNISIKTFSKSALIYSIVSYICYGNKMNASVEAAFVKKIGARAGIPITALNLYSIVNKASESANRLKIFMPQFYHALYVEKLEMMYFLIEPIIMKAGYLNINTASNIEITNALKRMM
>NZ_CP042551.1|WP_032647873.1|1744919_1745138_-|hypothetical-protein
MLKPIMKFLKKFFNSVIQDCFNDIYWYGVFIFSAFLSGIVAANIDDIKIAHNIILGIFIIVFVIAFRFRDKG
>NZ_CP042551.1|WP_072026006.1|1744436_1744916_-|type-VI-secretion-system-tube-protein-Hcp
MTIPAHMWLTDENNSPITGECLMPTRLGSTELKSFNHSVWIPTDYNTGKLTGTRLHVPITFEKEIDRLTPYLFRAVCQGRTFGKALIKMYRINEAGIEVEYFNIKLENVKITRISPILFPIGVASKHMEEIEIRYESIEWIYCDGNIMFKDSWNERAVA
>NZ_CP042551.1|WP_006809407.1|1742051_1744331_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPNQASDPSGQINSNEEQAGGEDRMENFTTNLNQLARVGGIDPLIGRDKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVIADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVMGSTTYQEFSNIFEKDRALARRFQKIDVTEPSVDETVQIINGLKTKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPASKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLRTLGNRLKMLVFGQDKAIEALTEAIKMARAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVGLDQAKNELTYDFQSAAKHKPEAAH
>NZ_CP042551.1|WP_006174393.1|1741703_1742024_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA
>NZ_CP042551.1|WP_006809408.1|1741214_1741436_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>NZ_CP042551.1|WP_032647870.1|1739203_1741144_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLEERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLLDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP042551.1|WP_017384842.1|1738091_1739207_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>NZ_CP042551.1|WP_017693707.1|1736975_1737932_-|DUF535-domain-containing-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLDALNDHYEMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR
>NZ_CP042551.1|WP_032647877.1|1748414_1749398_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MPANSITPSDLKTILHSKRANIYYLEKCRIQVNGGRVEYVTQEGKESFYWNIPIANTTAVMLGMGTSVTQMAMREFARAGVMVGFCGTDGTPLYSANEVDIDVSWLCPQSEYRPTEYLQNWVSFWFNEEKRLQAAKHFQFIRLQQIEKQWSGLRMQREMAFQPDKDALNTLLERARQGMEKAQDHTSLMLQEAQLTKSLYKLTSQTTGYGNFTRAKRGGGADMANRFLDQGNYLAYGLAAVAAWVTGIPHGLAVMHGKTRRGGLVFDIADLIKDALVMPQAFIAAMEGEDNQQFRQRCINAFQQADALDVMITTLQETSQSLAGSTK
>NZ_CP042551.1|WP_032647878.1|1749394_1752619_+|type-I-F-CRISPR-associated-helicase-Cas3
MNVLIISRCTKRAREQSCQIIDQFAERTGDAAWQTTITMEGAITLRKLLRKTARRNTAVACHWLKKNGQTELLWIVGNLRRFNAQGRVPTNRTTLQIIRNDSEHRWQSAESIALLAAIAGLFHDFGKAGMCFQQTLLKESKHRFQPYRHEWISVRLFQAFVGQQTDAQWLASLEHLKATDEKAMLKALTMDTPEKSGSPLGHLPPLARVVAWLMLSHHRLPQSHSAEPQLLYCDGWLERQLNADWNSLNHKSTEKHQWKERDLKNVWKFPHGTPLRSKTWREKARQIGKRIRNTPALLDFGSLDNLFTLHLARLSLMLADHFYSSQPAYSGWQDDAVQIWANSNPEPNQKLDEHNVGVAHHALLMGRSLPTLRRALPAIARHKAFRERAKDPRFFWQNKAWDVASSLRDKSAEQGFFGINMASTGCGKTFANARIMYALADEQEGCRFSVALGLRTLTLQTGHALQSRLGLDDDTLAVVTGAAAVKELYQGNDTEDNNSASDEAFFASHHYVHYEGATSGGTAQQWLSKEPALNRLVSAPVLVTTIDHLMPATEGVRGGRQIPAMLRLLTSDLVLDEPDDFDIDDLHALCRLVNWAGMLGSRVLLSSATLPPALTEALFEAYREGRKAWQAACGQSDRPMNICCAWFDEYCAQSQDVADDAHFHRAHGDFVRQRIKRLPDQPRLRLGKLAAVEPQSSSKTDVVSALAQTLRQQMIALHGLHHSTHNAGKTVSFGLVRMANINPLVAVAQTLMALPSPDNYSIHYCVYHSQHPLAVRAAIEKRLDCAFTRHAPERIWQLPEVKQALASQEQHHLFVVLGTSVLEVGRDFDADWGIIEPSSMRSLIQFAGRIQRHRQIAPESENLVILDRNVRALHGEKVAYCRPGFETGQHLLLHHDLHALIDEEGYRTLNAIPRIAEDVPGNALAALEHTRLRAALLEGGDKSDAVAALWWRLPLTWNGELQKRTPFRRASAQASFFLSMEEEGDEPEFCLMQEDGVLKPAGRFCIQPLFMADGVEPWIAIDYAEVLQALADEKQMELAVVSRRYGEITLRDERKEKAEEWLYHQVLGVFREYL
>NZ_CP042551.1|WP_032647879.1|1752634_1753945_+|type-I-F-CRISPR-associated-protein-Csy1
MSVEALSAFIAEYIAGRRQTKLEAFDKEAAKRSDADSATIAAERRELELRYEPKAWLTDAAKRAGQINLVTHAAKFTHGDSKSCSIYSEAVAQEGYLSTAALSGLEPDAVGNAAALDVAKLLQTRVDGGDSLLASLKRGDHAALAAFADGENQLREWIAGFSRALTPGEPASHKLAKQGYFPVGEGYHLLSPLFATSLVHAMHQKMIAFRFGDEVKAIWKARREKTWHPTPLTLFPDAAEIHFGGTKPQNISYLNSVRGGRCWLLSCQPPQGKRAEKAPTNLRSVFASGGQFDRRARSQIQLLVSLLTKTGSYTSFRIREARDGYINMLIDLLFEIASELQREAWQNWTLNCPNLKPHQQLWLDPWRTKTDEAFRLEREKGDWQGAVAEDFALWLNARLRKAMPDLGAVEKREWETRERLRSNLREMEKIIQEALK
>NZ_CP042551.1|WP_032647880.1|1753941_1754877_+|type-I-F-CRISPR-associated-protein-Csy2
MSSLILLHRIRVENANAIAGLTYGFPAITHFLGFSHALSRKLTETHGLKIDGCAVVSHEHQIHAHTSGRDYQFALTRNPLTRDAKTASFNEEGRMHMTVSLLLECHGEIPNGEYGQRDLAEHLSQVCPTLRLAGGIIVDIQAITVMAMPSDSRDLCRLQWQLMPGFALRDRSNWLGEHYQTLLESDPNTSLLDAWLDFAAMKFQAETPEEGDIREGEPANWHYVPKPNSGYLVPLMTGYQRISALYSPGMVSNARDAETPFAFTEAVYGVGEWCGLHRIQSLNEIFWRFHTTETGYYCQGAGAPVTSAHSK
>NZ_CP042551.1|WP_032647881.1|1754890_1755889_+|type-I-F-CRISPR-associated-protein-Csy3
MAKAPTAVKTASVLAFERKLATTDAVMYSGSWQGETWQPIRIQEKAVRGTISNRLKNALTNDPAKLDAEIQKANLQRVDVAALPADADTLQVKFTLRVLGNLSTPSVCNDRAYQDALQQVIDGYISEHGFAELARRYATNLANGRFLWRNRVGAEKITVNVTGSKTWTFDAYCYALRDFSASDKNLEALAQEIEKGLSGEGFVLLNVEAQVLLGAGQEVFPSQELVLDSNSSKSRLLYQVDNVAGMHSQKIGNAIRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKMDFYTLLDNWVTKGQKPDVAQQHYVMAVLIRGGVFGEKGE
>NZ_CP042551.1|WP_032647882.1|1755898_1756453_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIEIRVLPDPEFSEEMLMAALMAKLHRALGQRGKGDIGVSFPAHGIKPGAVLRLHGEHLALSELESLAWRKGLSDYCLCTAIKAVPEVYHWRCVSRVQVKSSAPRLMRRSVKKGWITEEEAQQRIRTMEEARTDLPWLNLRSLSTGQSFRLFIRHGELLSAPVVGMFSTYGLSATATVPWF
>NZ_CP042551.1|WP_032647883.1|1756475_1756949_-|RES-domain-containing-protein
MIFYRLVTGRFASEAWSGSGANQYGGRWNHKGHPAVYVSTSISLASLEILVHVRKDTVLNQYQLFSINIPDDQIDYLDKAWLPEDWQENPAPVSTMDLGTGWLQANSALALILPSCIIPYENNAILNPLHPAFRKALNSVELLPFNFDTRLAEKTAP
>NZ_CP042551.1|WP_023296216.1|1756945_1757389_-|DUF2384-domain-containing-protein
MRTWVPAQRPADNTLWRYAGLPASRGMRLIEYLNQGLPVSVLDNIHEWTDMSKAEILRVTGINERNVARRKSTGRTLTPDESERVARFVRVLDAAVDYFGSKEEAWNWLQLPVRGLGNVAPVDLIATETGALEVTDLIGRLEHGVFA
>NZ_CP042551.1|WP_002211347.1|1758486_1758705_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP042551.1|WP_032668747.1|1758989_1759694_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPGQFHLSRSMKRFHAKSPFRVTLNHAFGQVIEGCAEDRLEGTWITRDIIIAYHQLHELGYAHSIEVWSDDDLVGGMYGVAQGTLFCGESMFSRSTNASKTALLVFSQEFARRGGQLMDCQVLNEHTASLGAVEIPRRHYIEHLEQCRKETLPRDFWVPRTLFIPNA

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Crispr_ID: NZ_CP042551_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042551_3

1757629-1758319

TypeI-F

I-F

Consensus_repeat	Method
GTGCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAA	CRT

11 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP042551_3

>merge|NZ_CP042551|3|1757629-1758319|PILER-CR,CRISPRCasFinder,CRT
GTGCACTGCCGTACAGGCAGCTTAGAAACTGCATGACTGGATATCCATTCCGGTTACTGCACGTGCACTGCCGTACAGGCAGCTTAGAAACCACATATGCATTCATCTCACCGGTGCGCATCGTGCACTGCCGTACAGGCAGCTTAGAAATCAGGCTGGCAATACATCTTCGGCATTGTCGGGTGCACTGCCGTACAGGCAGCTTAGAAATTGCAAATCGAAAATGCGGGACTGTTCAATATGTGCACTGCCGTACAGGCAGCTTAGAAACGTCGGAACGGCGCATCGCTGCTGCGGCGGCTGTGCACTGCCGTACAGGCAGCTTAGAAAAGACAAATAGTGTCCGTTCACTCTGCGGGTGTGTGCACTGCCGTACAGGCAGCTTAGAAATAGTCACCCAGCGTTTGATGCATTACGGTGCGGTGCACTGCCGTACAGGCAGCTTAGAAAAAAAAAGCGATTACGCCGTTCTTCTATCAGGAGTGCACTGCCGTACAGGCAGCTTAGAAAGATTATCGTTTCAAGCTGCGTGACGCTTATTTGTGCACTTGTCGTACAGGCAGCTTAGAAACACTCAATGCCCATTTGCACAAATGAGTTAATGTGCACTGCCGTACAGGCAGCTTAGAAATTCCTGCGATTGCTCTATGGCGCGACGAGTGAGTGCACTGCCGAACAGGCAGTTTTATAA

>NZ_CP042551|3|3|1757629-1758078|PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAA	CTGCATGACTGGATATCCATTCCGGTTACTGCAC
GTGCACTGCCGTACAGGCAGCTTAGAAA	CCACATATGCATTCATCTCACCGGTGCGCATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCAGGCTGGCAATACATCTTCGGCATTGTCGG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTGCAAATCGAAAATGCGGGACTGTTCAATAT
GTGCACTGCCGTACAGGCAGCTTAGAAA	CGTCGGAACGGCGCATCGCTGCTGCGGCGGCT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGACAAATAGTGTCCGTTCACTCTGCGGGTGT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TAGTCACCCAGCGTTTGATGCATTACGGTGCG
GTGCACTGCCGTACAGGCAGCTTAGAAA

>NZ_CP042551|3|3|1757629-1758319|CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAA	CTGCATGACTGGATATCCATTCCGGTTACTGCAC
GTGCACTGCCGTACAGGCAGCTTAGAAA	CCACATATGCATTCATCTCACCGGTGCGCATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCAGGCTGGCAATACATCTTCGGCATTGTCGG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTGCAAATCGAAAATGCGGGACTGTTCAATAT
GTGCACTGCCGTACAGGCAGCTTAGAAA	CGTCGGAACGGCGCATCGCTGCTGCGGCGGCT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGACAAATAGTGTCCGTTCACTCTGCGGGTGT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TAGTCACCCAGCGTTTGATGCATTACGGTGCG
GTGCACTGCCGTACAGGCAGCTTAGAAA	AAAAAAGCGATTACGCCGTTCTTCTATCAGGA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GATTATCGTTTCAAGCTGCGTGACGCTTATTTG
TGCACTTGTCGTACAGGCAGCTTAGAAA	CACTCAATGCCCATTTGCACAAATGAGTTAAT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTCCTGCGATTGCTCTATGGCGCGACGAGTGA
GTGCACTGCCGAACAGGCAGTTTTATAA

>NZ_CP042551|3|3|1757629-1758319|CRT
GTGCACTGCCGTACAGGCAGCTTAGAAA	CTGCATGACTGGATATCCATTCCGGTTACTGCAC
GTGCACTGCCGTACAGGCAGCTTAGAAA	CCACATATGCATTCATCTCACCGGTGCGCATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCAGGCTGGCAATACATCTTCGGCATTGTCGG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTGCAAATCGAAAATGCGGGACTGTTCAATAT
GTGCACTGCCGTACAGGCAGCTTAGAAA	CGTCGGAACGGCGCATCGCTGCTGCGGCGGCT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGACAAATAGTGTCCGTTCACTCTGCGGGTGT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TAGTCACCCAGCGTTTGATGCATTACGGTGCG
GTGCACTGCCGTACAGGCAGCTTAGAAA	AAAAAAGCGATTACGCCGTTCTTCTATCAGGA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GATTATCGTTTCAAGCTGCGTGACGCTTATTTG
TGCACTTGTCGTACAGGCAGCTTAGAAA	CACTCAATGCCCATTTGCACAAATGAGTTAAT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTCCTGCGATTGCTCTATGGCGCGACGAGTGA
GTGCACTGCCGAACAGGCAGTTTTATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042551.1\|WP_002211347.1\|1758486_1758705_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP042551.1\|WP_032647881.1\|1754890_1755889_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP042551.1\|WP_032647882.1\|1755898_1756453_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP042551.1\|WP_032647880.1\|1753941_1754877_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|187867
NZ_CP042551.1\|WP_015570980.1\|1761460_1763227_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP042551.1\|WP_032647883.1\|1756475_1756949_-\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|227941
NZ_CP042551.1\|WP_017384837.1\|1769279_1769894_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP042551.1\|WP_032647875.1\|1745140_1745842_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042551.1\|WP_023296216.1\|1756945_1757389_-\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346
NZ_CP042551.1\|WP_000228469.1\|1764853_1765348_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP042551.1\|WP_032647885.1\|1759739_1761461_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP042551.1\|WP_032668747.1\|1758989_1759694_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP042551.1\|WP_032647879.1\|1752634_1753945_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP042551.1\|WP_003858266.1\|1771339_1772632_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP042551.1\|WP_032647878.1\|1749394_1752619_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP042551.1\|WP_032647876.1\|1746660_1747104_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042551.1\|WP_023296220.1\|1769903_1771247_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP042551.1\|WP_032647886.1\|1765483_1769152_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236669
NZ_CP042551.1\|WP_003858303.1\|1763341_1764310_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP042551.1\|WP_032647877.1\|1748414_1749398_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676

Protein	Function_ID	Function_description	E-value
NZ_CP042551.1\|WP_002211347.1\|1758486_1758705_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
NZ_CP042551.1\|WP_032647881.1\|1754890_1755889_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP042551.1\|WP_032647882.1\|1755898_1756453_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	4.7067e-93
NZ_CP042551.1\|WP_032647880.1\|1753941_1754877_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	2.76788e-132
NZ_CP042551.1\|WP_015570980.1\|1761460_1763227_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP042551.1\|WP_032668747.1\|1758989_1759694_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.31126e-137
NZ_CP042551.1\|WP_032647883.1\|1756475_1756949_-\|RES-domain-containing-protein	gnl\|CDD\|227941	COG5654, COG5654, Uncharacterized conserved protein [Function unknown].	4.73888e-27
NZ_CP042551.1\|WP_017384837.1\|1769279_1769894_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	7.77316e-117
NZ_CP042551.1\|WP_023296216.1\|1756945_1757389_-\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	2.89096e-48
NZ_CP042551.1\|WP_000228469.1\|1764853_1765348_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
NZ_CP042551.1\|WP_032647885.1\|1759739_1761461_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP042551.1\|WP_032647879.1\|1752634_1753945_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	2.70099e-166
NZ_CP042551.1\|WP_032647878.1\|1749394_1752619_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP042551.1\|WP_003858266.1\|1771339_1772632_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP042551.1\|WP_023296220.1\|1769903_1771247_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP042551.1\|WP_032647886.1\|1765483_1769152_+\|hypothetical-protein	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP042551.1\|WP_003858303.1\|1763341_1764310_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP042551.1\|WP_032647877.1\|1748414_1749398_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0

>NZ_CP042551.1|WP_023296216.1|1756945_1757389_-|DUF2384-domain-containing-protein
MRTWVPAQRPADNTLWRYAGLPASRGMRLIEYLNQGLPVSVLDNIHEWTDMSKAEILRVTGINERNVARRKSTGRTLTPDESERVARFVRVLDAAVDYFGSKEEAWNWLQLPVRGLGNVAPVDLIATETGALEVTDLIGRLEHGVFA
>NZ_CP042551.1|WP_032647883.1|1756475_1756949_-|RES-domain-containing-protein
MIFYRLVTGRFASEAWSGSGANQYGGRWNHKGHPAVYVSTSISLASLEILVHVRKDTVLNQYQLFSINIPDDQIDYLDKAWLPEDWQENPAPVSTMDLGTGWLQANSALALILPSCIIPYENNAILNPLHPAFRKALNSVELLPFNFDTRLAEKTAP
>NZ_CP042551.1|WP_032647882.1|1755898_1756453_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIEIRVLPDPEFSEEMLMAALMAKLHRALGQRGKGDIGVSFPAHGIKPGAVLRLHGEHLALSELESLAWRKGLSDYCLCTAIKAVPEVYHWRCVSRVQVKSSAPRLMRRSVKKGWITEEEAQQRIRTMEEARTDLPWLNLRSLSTGQSFRLFIRHGELLSAPVVGMFSTYGLSATATVPWF
>NZ_CP042551.1|WP_032647881.1|1754890_1755889_+|type-I-F-CRISPR-associated-protein-Csy3
MAKAPTAVKTASVLAFERKLATTDAVMYSGSWQGETWQPIRIQEKAVRGTISNRLKNALTNDPAKLDAEIQKANLQRVDVAALPADADTLQVKFTLRVLGNLSTPSVCNDRAYQDALQQVIDGYISEHGFAELARRYATNLANGRFLWRNRVGAEKITVNVTGSKTWTFDAYCYALRDFSASDKNLEALAQEIEKGLSGEGFVLLNVEAQVLLGAGQEVFPSQELVLDSNSSKSRLLYQVDNVAGMHSQKIGNAIRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKMDFYTLLDNWVTKGQKPDVAQQHYVMAVLIRGGVFGEKGE
>NZ_CP042551.1|WP_032647880.1|1753941_1754877_+|type-I-F-CRISPR-associated-protein-Csy2
MSSLILLHRIRVENANAIAGLTYGFPAITHFLGFSHALSRKLTETHGLKIDGCAVVSHEHQIHAHTSGRDYQFALTRNPLTRDAKTASFNEEGRMHMTVSLLLECHGEIPNGEYGQRDLAEHLSQVCPTLRLAGGIIVDIQAITVMAMPSDSRDLCRLQWQLMPGFALRDRSNWLGEHYQTLLESDPNTSLLDAWLDFAAMKFQAETPEEGDIREGEPANWHYVPKPNSGYLVPLMTGYQRISALYSPGMVSNARDAETPFAFTEAVYGVGEWCGLHRIQSLNEIFWRFHTTETGYYCQGAGAPVTSAHSK
>NZ_CP042551.1|WP_032647879.1|1752634_1753945_+|type-I-F-CRISPR-associated-protein-Csy1
MSVEALSAFIAEYIAGRRQTKLEAFDKEAAKRSDADSATIAAERRELELRYEPKAWLTDAAKRAGQINLVTHAAKFTHGDSKSCSIYSEAVAQEGYLSTAALSGLEPDAVGNAAALDVAKLLQTRVDGGDSLLASLKRGDHAALAAFADGENQLREWIAGFSRALTPGEPASHKLAKQGYFPVGEGYHLLSPLFATSLVHAMHQKMIAFRFGDEVKAIWKARREKTWHPTPLTLFPDAAEIHFGGTKPQNISYLNSVRGGRCWLLSCQPPQGKRAEKAPTNLRSVFASGGQFDRRARSQIQLLVSLLTKTGSYTSFRIREARDGYINMLIDLLFEIASELQREAWQNWTLNCPNLKPHQQLWLDPWRTKTDEAFRLEREKGDWQGAVAEDFALWLNARLRKAMPDLGAVEKREWETRERLRSNLREMEKIIQEALK
>NZ_CP042551.1|WP_032647878.1|1749394_1752619_+|type-I-F-CRISPR-associated-helicase-Cas3
MNVLIISRCTKRAREQSCQIIDQFAERTGDAAWQTTITMEGAITLRKLLRKTARRNTAVACHWLKKNGQTELLWIVGNLRRFNAQGRVPTNRTTLQIIRNDSEHRWQSAESIALLAAIAGLFHDFGKAGMCFQQTLLKESKHRFQPYRHEWISVRLFQAFVGQQTDAQWLASLEHLKATDEKAMLKALTMDTPEKSGSPLGHLPPLARVVAWLMLSHHRLPQSHSAEPQLLYCDGWLERQLNADWNSLNHKSTEKHQWKERDLKNVWKFPHGTPLRSKTWREKARQIGKRIRNTPALLDFGSLDNLFTLHLARLSLMLADHFYSSQPAYSGWQDDAVQIWANSNPEPNQKLDEHNVGVAHHALLMGRSLPTLRRALPAIARHKAFRERAKDPRFFWQNKAWDVASSLRDKSAEQGFFGINMASTGCGKTFANARIMYALADEQEGCRFSVALGLRTLTLQTGHALQSRLGLDDDTLAVVTGAAAVKELYQGNDTEDNNSASDEAFFASHHYVHYEGATSGGTAQQWLSKEPALNRLVSAPVLVTTIDHLMPATEGVRGGRQIPAMLRLLTSDLVLDEPDDFDIDDLHALCRLVNWAGMLGSRVLLSSATLPPALTEALFEAYREGRKAWQAACGQSDRPMNICCAWFDEYCAQSQDVADDAHFHRAHGDFVRQRIKRLPDQPRLRLGKLAAVEPQSSSKTDVVSALAQTLRQQMIALHGLHHSTHNAGKTVSFGLVRMANINPLVAVAQTLMALPSPDNYSIHYCVYHSQHPLAVRAAIEKRLDCAFTRHAPERIWQLPEVKQALASQEQHHLFVVLGTSVLEVGRDFDADWGIIEPSSMRSLIQFAGRIQRHRQIAPESENLVILDRNVRALHGEKVAYCRPGFETGQHLLLHHDLHALIDEEGYRTLNAIPRIAEDVPGNALAALEHTRLRAALLEGGDKSDAVAALWWRLPLTWNGELQKRTPFRRASAQASFFLSMEEEGDEPEFCLMQEDGVLKPAGRFCIQPLFMADGVEPWIAIDYAEVLQALADEKQMELAVVSRRYGEITLRDERKEKAEEWLYHQVLGVFREYL
>NZ_CP042551.1|WP_032647877.1|1748414_1749398_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MPANSITPSDLKTILHSKRANIYYLEKCRIQVNGGRVEYVTQEGKESFYWNIPIANTTAVMLGMGTSVTQMAMREFARAGVMVGFCGTDGTPLYSANEVDIDVSWLCPQSEYRPTEYLQNWVSFWFNEEKRLQAAKHFQFIRLQQIEKQWSGLRMQREMAFQPDKDALNTLLERARQGMEKAQDHTSLMLQEAQLTKSLYKLTSQTTGYGNFTRAKRGGGADMANRFLDQGNYLAYGLAAVAAWVTGIPHGLAVMHGKTRRGGLVFDIADLIKDALVMPQAFIAAMEGEDNQQFRQRCINAFQQADALDVMITTLQETSQSLAGSTK
>NZ_CP042551.1|WP_032647876.1|1746660_1747104_+|hypothetical-protein
MNMENQSISQLYSELSLNPDFPALVERCNLLTEILLDCHSLPQTQPVCRCLGAYLDVVKTELAESMSDFRVVEFDDEAERPKGNEWLLEDTEIKCDYCRALNHVLLVSHFDREMLPHLTGLLHDITHSMAADVVAPECGKPVIHIIN
>NZ_CP042551.1|WP_032647875.1|1745140_1745842_-|hypothetical-protein
MYYSEDIINKIGTDKELAIRLDKAMSGVKEEVIDYLNNLGDAATRLLYYSSCLTKNYHDVCTRLKDEDVRFVQGLGELVIHRNLIFRMIKIYIETVLKSKNEVEKKSILERLTLFTKNISIKTFSKSALIYSIVSYICYGNKMNASVEAAFVKKIGARAGIPITALNLYSIVNKASESANRLKIFMPQFYHALYVEKLEMMYFLIEPIIMKAGYLNINTASNIEITNALKRMM
>NZ_CP042551.1|WP_002211347.1|1758486_1758705_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP042551.1|WP_032668747.1|1758989_1759694_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPGQFHLSRSMKRFHAKSPFRVTLNHAFGQVIEGCAEDRLEGTWITRDIIIAYHQLHELGYAHSIEVWSDDDLVGGMYGVAQGTLFCGESMFSRSTNASKTALLVFSQEFARRGGQLMDCQVLNEHTASLGAVEIPRRHYIEHLEQCRKETLPRDFWVPRTLFIPNA
>NZ_CP042551.1|WP_032647885.1|1759739_1761461_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLTLGIVLAIVTLLASIGLLTLSGWFLSASAAAGFAGLYSFNYMLPAAGVRGTAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARFRQGELLNRVVADVDTLDHLYLRVISPMVGAFVVIVVVTLGLSFLDVPIALTLGGIMLMTLIILPPLFYRAGKTTGENLTRLRGEYRQQLTAWLQGQAELTLFGASKRYRARMENTELNWHEAQRRQSELTAFSQALMMLIGGIAVIAMLWMASGGVGGNAQPGPLIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITDIAEQEPEVKFSAGQTAVPEQVALTLSNVTFVYDKQAQNALEDITLSVDAGQRIAILGRTGCGKSTLLQLLTRAWDPQQGEIRFNDVPLSGFSEAALRKTVSVVPQRVHLFSATLRDNLLLAAPDASDDTLRAMLEQVGLHKLLEDDGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQILDLLANVMKGKTVLMVTHRLRGLVNFDQIIVMDNGHIIEQGSHAELLAKQGRYYQFKQRL
>NZ_CP042551.1|WP_015570980.1|1761460_1763227_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MEKTRQQELTRWLKQQSVLSRRWLMISRVLGFISGLLIVAQAWLLARILNHMIMENIPREALLLPFIVLVLVFVLRAWVVWLRERVGFHAGQHIRYEIRRKVLDRLSEAGPAWIQGKPAGSWATLILEQIDDMHDYYARYLPQMALAVFVPLMIVIAIFPVNWVAALILLGTAPLIPLFMAMVGMGAADANRRNFLALGRLSGHFLDRLRGMETLRIFGRGEAETENIRLASQDFRQRTMEVLRMAFLSSGVLEFFTSLSIALVAVYFGFSYLGALDFGHYGTAVTLSAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLANPERGEVTLNTNDPVTIEAQDFSVLSPEGKVLAGPLNFTLPAGQRVVLVGTSGSGKSSLLNALSGFMAYTGSLRINKTELRELDPDAWRKQLSWVGQNPQLPAPTLRENVLLARPDAREDELQSVLDRAWVSEFLPLLAQGVDTVIGDQSAGLSVGQAQRVAVARALLNPSSLMLLDEPAASLDAHSEQRVMDALNAASRQQTTLMVTHQLEGIADWDQIWVMENGHIVEQGDYAALVAAQGPFATLLANRQEDI
>NZ_CP042551.1|WP_003858303.1|1763341_1764310_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEILFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDTFRAEKILIKRLMDKVASGNIVLHTNRTLEEVTGDQMGVAGLRIRDTQNTDNVETLEVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSVPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLAEQGK
>NZ_CP042551.1|WP_000228469.1|1764853_1765348_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP042551.1|WP_032647886.1|1765483_1769152_+|hypothetical-protein
MSQEYTEDKEVTLSKLSSGRRLLEALLIVIALFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGVPGAWLADTLFFIFGVMAYTLPVIIIGGCWFAWRHRQNDDYIDYFAVSLRLIGALALILTSCGLAAINADDIWYFASGGVIGSLLSSALQPMLHSSGGTLALLCIWAAGLTLFTGWSWVSIAEKIGSFILTLLTFASNRTRRDDTWVDEDEYEDEYEEEDEAPVQRRESRRARILRGALARRQRVAEKFANPLGRKTDAALFSGKRMDEEEQIEYRGAAVDPDDVLFSGHRATPGEYDEYDPLLHGHSVTEPVAAAAAATTAAQAHVAPVEAVMPSSPVPAPESAIQQPQVDWQTAPGVHTPEPTIAPEPESYIPVQQEQWQQPYQPPEPASEPQQPYQAYTPEPAEPEQPYVAPVSEPEVVEEAKPSRPPLYYFEEVEERRAREREQLAAWYQPVPEPVQEPVVKAPSASVAPVDPAPAVASGAETVKQATAAAAASAPLFSPATDGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRMAEEKARESDYEDDADELHQDELARQFAAQQTQRYGNEYQHDVHSQQDEDDAAEAELARQFAATQQQRYSGEQPSGANPFSLSDFEFSPMKDLVDDGPSEPLFTPSVMPEAEPVRQAPAPQVNAQPQQPVPQAYAQPHTPPAQPPQPQFQQPAPQPQESLIHPLLMRNGDSRPLQRPSTPLPSLDLLTPPPAEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNTKFRDNPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDAQHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTSPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGGGGFDGGEELDPLFDQAVNFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP042551.1|WP_017384837.1|1769279_1769894_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAIVCALLSSFVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGNAVQEGQGDLWVKRPNLFNWHMTQPDESVLVSDGKTLWFYNPFVEQATATWLKDATSNTPFMLIARNQSSDWQQYNIKQNGDEFVLTPKGSNGNLKQFTINVSSNGTINQFGAVEQDDQRSSYQLKSQQNGAVDASKFTFTPPQGVTVDDQRNK
>NZ_CP042551.1|WP_023296220.1|1769903_1771247_+|replication-associated-recombination-protein-A
MSNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTIFFIGATTENPSFELNSALLSRARVYLLKSLTTEDIEKVLTQAMEDKARGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVDDAGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMSDARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFPQEMAQTRYYHPTNRGLEGKIGEKLAWLAGQDQNSPIKRYR
>NZ_CP042551.1|WP_003858266.1|1771339_1772632_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVQTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDQAKAELDVLQAEIRDIALAIPNIPDDSVPVGKDENDNVEVKRWGTPREFDFEVRDHVTLGEMHAGLDFAAAVKLTGSRFVVMKGQIAHLHRALAQFMLDLHTEQHGYSETYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEVPLTNLVRDEIIDEDDLPIKLTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEESMDALEEMTGHAEKVLELLGLPYRRMALCTGDMGFGACKTFDLEVWVPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVLENYQQADGRIEIPEVLRPYMKGQQFIG

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Crispr_ID: NZ_CP042551_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042551_4

3155948-3156048

Orphan

Consensus_repeat	Method
GTTCGACGGGAGGCTCGTCACTACCTTCGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042551_4

>merge|NZ_CP042551|4|3155948-3156048|CRISPRCasFinder
GTTCGACGGGAGGCTCGTCACTACCTTCGACGGGTACTAGCTTCAAGACAGCGCCAGCACTTGGTTTAGGTTCGACTGGAGGCTCGTCACTACCTTCGACG

>NZ_CP042551|4|4|3155948-3156048|CRISPRCasFinder
GTTCGACGGGAGGCTCGTCACTACCTTCGACG	GGTACTAGCTTCAAGACAGCGCCAGCACTTGGTTTAG
GTTCGACTGGAGGCTCGTCACTACCTTCGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042551.1\|WP_045325428.1\|3156706_3157273_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368819
NZ_CP042551.1\|WP_023313997.1\|3159606_3159804_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042551.1\|WP_015705894.1\|3149323_3149440_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042551.1\|WP_006809788.1\|3161103_3161313_+\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236900
NZ_CP042551.1\|WP_032655965.1\|3158523_3159471_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371127
NZ_CP042551.1\|WP_047058761.1\|3161359_3161869_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379158
NZ_CP042551.1\|WP_063133514.1\|3160737_3160947_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042551.1\|WP_047058765.1\|3162153_3163071_+\|recombinase-RecT	unknown	unknown	gnl\|CDD\|367688
NZ_CP042551.1\|WP_063135696.1\|3150538_3150709_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP042551.1\|WP_059452757.1\|3150074_3150575_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379158
NZ_CP042551.1\|WP_025760151.1\|3157303_3157525_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP042551.1\|WP_058647991.1\|3149436_3150081_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368603
NZ_CP042551.1\|WP_032647527.1\|3153130_3153649_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379158
NZ_CP042551.1\|WP_072258162.1\|3153626_3153944_-\|protein-ren	unknown	unknown	unknown
NZ_CP042551.1\|WP_047345172.1\|3157642_3158362_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP042551.1\|WP_151608556.1\|3153933_3155307_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273206
NZ_CP042551.1\|WP_047058763.1\|3161865_3162144_+\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP042551.1\|WP_023330218.1\|3150708_3151146_-\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
NZ_CP042551.1\|WP_024191555.1\|3151381_3151579_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042551.1\|WP_063135697.1\|3151578_3151848_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042551.1\|WP_045325428.1\|3156706_3157273_-\|hypothetical-protein	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	0.00594597
NZ_CP042551.1\|WP_058647991.1\|3149436_3150081_-\|hypothetical-protein	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	1.31422e-54
NZ_CP042551.1\|WP_006809788.1\|3161103_3161313_+\|cell-division-protein-FtsZ	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	4.00543e-36
NZ_CP042551.1\|WP_032655965.1\|3158523_3159471_+\|hypothetical-protein	gnl\|CDD\|371127	pfam10546, P63C, P63C domain. This domain was identified by Iyer and colleagues.	1.86057e-11
NZ_CP042551.1\|WP_047058761.1\|3161359_3161869_+\|hypothetical-protein	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	4.348e-09
NZ_CP042551.1\|WP_063135696.1\|3150538_3150709_-\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	3.88921e-21
NZ_CP042551.1\|WP_059452757.1\|3150074_3150575_-\|HNH-endonuclease	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	1.01079e-08
NZ_CP042551.1\|WP_025760151.1\|3157303_3157525_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	2.52348e-08
NZ_CP042551.1\|WP_047345172.1\|3157642_3158362_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	3.00385e-29
NZ_CP042551.1\|WP_032647527.1\|3153130_3153649_-\|HNH-endonuclease	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	2.57952e-10
NZ_CP042551.1\|WP_151608556.1\|3153933_3155307_-\|AAA-family-ATPase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	8.12631e-124
NZ_CP042551.1\|WP_047058765.1\|3162153_3163071_+\|recombinase-RecT	gnl\|CDD\|367688	pfam03837, RecT, RecT family. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to RecT.	1.1445e-22
NZ_CP042551.1\|WP_023330218.1\|3150708_3151146_-\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	5.7051e-51

>NZ_CP042551.1|WP_151608556.1|3153933_3155307_-|AAA-family-ATPase
MSRFIDLYVEQAVIGGIMLAAGRTDGVDMATDAIEGLTEDHFTATPHKVALRSYKRLNESGEKIDLLTLTSDLERLGALESAGGFAYLAECSKNTPSFANLASYCEKLREMHLGRRMTLALQVGIQKLSEPTTEGIADIIGNIQADISGIEHSADYGTEHITTGIDMSLETIQSIISGDIWKHKTELGMATIDSAFGGFNNTDFIVVGGRPGMGKTMFSTTVTETVGLKNKKPVLFFSLEMPVDQISERVAFHRARVSKEDLLSKQSGVMDGAWGKVGHCMKDFIEAPIYINDKPSLSVHQVRAEARRMSKKLGGLGVVIVDYLQKMRMSDPENMNRSVGEIATGLKNLAKELRCPVIALAQLNRKVEERANKRPVAADLRESGVIEQEADVIFMIYRDEKYNPNTELKGITEIICVKSRHAPGAEKTYHFSSRYSGLDPVDFTYSGQMQQEADYEC
>NZ_CP042551.1|WP_072258162.1|3153626_3153944_-|protein-ren
MSAKTMKGKQAILRYLETHQTFTAKDVATECGMTINCITKNAIDLERARKIVRVSKVWRTVTYRLATPEEQDGTARSCTNGIFQECRNSAVMKRILSVYGRCGNV
>NZ_CP042551.1|WP_032647527.1|3153130_3153649_-|HNH-endonuclease
MGGVEMCELTQGKLKSLLHYDPETGIFTRKKGSGGVAAGSIAGGLNGHGYINLKIGGKTFKAHRLAFLYVYGYMPEMVDHKNLNRADNRLSNLRAANRAQNGQNSNMRSDNASGVKGVSWDKRINKWVARCTCNGHENWIGSFENKECAIEAVRLFRGKTHGEFANHGEAAQ
>NZ_CP042551.1|WP_063135697.1|3151578_3151848_-|hypothetical-protein
MPKFKRIIISYFSGEPGELMRKAGFTWKFSRPVPIADSVEFYCCERRKKGPLPDHFHSVGWSDDGAFSHFTEEQVKECKQWAAAPQQEA
>NZ_CP042551.1|WP_024191555.1|3151381_3151579_-|hypothetical-protein
MESLNKIIINARVLSWKREFGPFVKCPKCFGLLTKCELCKGKGKLIQEDIDAWNNPIAKLKRDKR
>NZ_CP042551.1|WP_023330218.1|3150708_3151146_-|recombination-protein-NinB
MKQPVFYLRDERVRDNLIDYIRKLPVNDALPLVVKFSEADRTLAQNDLFHALCGDTAKQLQWAGKSRDLASWKVLYVSGHAIATGKPGEVVPGLEGEFCAIRESTAKMGIRRMTSLIEYSQAFAMQNGVQLREVRYSGDYFGRVA
>NZ_CP042551.1|WP_063135696.1|3150538_3150709_-|hypothetical-protein
MASPLARVITNEIFRVPARRQRKPAVKPSDIPTLKDYTSRLVDQKWLRLAARRAFK
>NZ_CP042551.1|WP_059452757.1|3150074_3150575_-|HNH-endonuclease
MAASRGTEGVQMIKLHELKNILHYDPETGVFTWKVNRASVKAGQRAGGINGGGYRKIRINNKWYPEHRLAWFYIHGVWPSKEVDHINHVRNDNRIENLRDVSARSNKGNCTNNTSGFVGVFYHKDMSRWCAGIKIDGRSKHLGTFDNPKRASLAYRLAKHWLEVGL
>NZ_CP042551.1|WP_058647991.1|3149436_3150081_-|hypothetical-protein
MMKPARRKCAHKACRQWFHPVRDGQVVCSFECASAIGKEQTAKAREAAKQKAAQRQRTEEKAGRQRRKAKRESFKTKAQWDKEAQSAFNRYIRIRDEGKECVSCGNPLIGKSNYLTGSAIDASHYRSRGAASHLKFNVFNVHSACTRCNRQLSGNAVEYRIRLIERIGQERVERLESDNDPRRFDIPYLQRIKSIFTRKARALEKRRARRQEAA
>NZ_CP042551.1|WP_015705894.1|3149323_3149440_-|hypothetical-protein
MNHADFLRYQAESVKRANLPPVAKHSQTKTNQPQKEAA
>NZ_CP042551.1|WP_045325428.1|3156706_3157273_-|hypothetical-protein
MHSLAYQQSTGLEQRPLISIYQSVPRNNRKLIRIREAVKAWQKATPGQSQVHISQLVAKEWLARGGKGLLLAGSEHNTKQNFFRMINDPGPKNDKGLMLLIPVIIDVMARDNEKVAREFGLVAKTEAELIAEAMKECTEAHQAKLLGQPIQRLEKEVREAAEALLRFLPTESIAAVVTSLAAMAPGVM
>NZ_CP042551.1|WP_025760151.1|3157303_3157525_-|helix-turn-helix-domain-containing-protein
MINKKSSASTPLEKAINAVGGSQKVLAEKVGVTPQAINMLKKRGGSLPVTKMRKYEEVTGLPREVLYPGIFAA
>NZ_CP042551.1|WP_047345172.1|3157642_3158362_+|helix-turn-helix-transcriptional-regulator
MSSISERIKFLLAKEGLKQRDLAEALSTSPQTVNNWIKRDALSREAAQQISEKFFYSLDWLLNGTGSPKKDLESSIPPESEWGTVDAWDKNTPLPADEVEVPFLKDIEFACGDGRVHSEDHNGFKLRFSKATLRRVGANTDGSGVLCFPATGDSMEPMIPDGTTVAVDTNNKRIVDGKLYAIGQGDGGEGQLKRIKQLYRKPGGKLIIRSYNNEAYPDEEADIDDVEIIGRLFWYSVLL
>NZ_CP042551.1|WP_032655965.1|3158523_3159471_+|hypothetical-protein
MSENKKEPTGKAKGGVARAKSLTAKQRSDQAKSGAIARWGYKATHMGNFKEQFGIDAECYVLNDELKTPVVTKTGLAQLLQIGSLARDIDRLMSAPFMSEMRDPDLEDKLEKPLKFQLEARSNNSTIAHGFDIGVVIDIAKLLVKAKEKGVLPANRIAAAEAAQRLMNASAKSGIRGVAYAVSGYEPAAQAVIEAFKMYVREEARAWEKEFPDELYYEWYRLYELKKPEKGGHPGNFRWFTERHIYETLAKSEGKILDIAKENREENGKRGDKIHMFLSDVGVKALRRHIGKIIGMASMCETKEQYESALERVFK
>NZ_CP042551.1|WP_023313997.1|3159606_3159804_-|hypothetical-protein
MVLDEERISMKIQAMGRAVMELSLADLPMTQQNIIDKLKQYRKETGNVIGKGANRDAAELVRKGQ
>NZ_CP042551.1|WP_063133514.1|3160737_3160947_+|hypothetical-protein
MSDLEFGLKVYALWFVGTFLLDIAINSLTKKEHRQPLSKLAIDHVRMYSAITIVGLIVCGMGWFLFKVV
>NZ_CP042551.1|WP_006809788.1|3161103_3161313_+|cell-division-protein-FtsZ
MINHYGTTPLIRQCVTPGMMAMHEGRTYRVSAVIQERKWVYLHTDAEIIRLSDCVIDVLLDGHGNPIQH
>NZ_CP042551.1|WP_047058761.1|3161359_3161869_+|hypothetical-protein
MLSIQRLKELFHYDAETGIFTRLKTAGGIVTGSIAGSLNPMGYLRVSIDHERYLCHRLAWLYSYGSWPEHEIDHINGIRTDNRLCNLRDVPHCINQLNKLSPKNNTSGVKGVYWNKKDKRWHARCSIDGKKYHLGNFTDLNEARAVVVAARERMHGKHAVHEERKPENL
>NZ_CP042551.1|WP_047058763.1|3161865_3162144_+|host-nuclease-inhibitor-GamL
MNAYLTYDRIEDRRWVEQQLTDEKEKWVDNRAKELIAMFPKYALQMSSLFLPKEAQMALVGEKAEEAYNDYVTRICYDRAEEEWQRQAPCPF
>NZ_CP042551.1|WP_047058765.1|3162153_3163071_+|recombinase-RecT
MSLTLVDFVKQQEPLFIKAATDERMVWAKESQFAIQIFQNNDYLAKVAFQNQTSTQNAIINVAAIGISLNPAQKLAYLVPRKGAICLDISYMGLMHIAQQSGAIKWCQSAIVRRNDQFRREGLDKPPIHIYNDFDTEEQRGDIVGAYVTVKTDDGDYLTHTMRIDAIYSIRDRSEAWKKYKSDNSKKCPWVTDEEQMILKTVVKQAAKYWPRRERLDAAIDHVNTEGEEGINFTAERQPERDITPLSETTQKEINDLLVSLDKTWDADLLPLCSRIFKRPISQPADLTEMEGVKALGFLRQKAAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP042551_3	3.7\|1758019\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1758019-1758050	32	NZ_CP042551.1	351711-351742	1	0.969

1. spacer 3.7|1758019|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to position: 351711-351742, mismatch: 1, identity: 0.969

tagtcacccagcgtttgatgcattacggtgcg	CRISPR spacer
taatcacccagcgtttgatgcattacggtgcg	Protospacer
**.*****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP042551_1	1.6\|1729973\|32\|NZ_CP042551\|CRISPRCasFinder,CRT	1729973-1730004	32	MK972693	Salmonella phage SI23, complete genome	6397-6428	2	0.938
NZ_CP042551_1	1.6\|1729973\|32\|NZ_CP042551\|CRISPRCasFinder,CRT	1729973-1730004	32	MK770415	Salmonella phage SF11, complete genome	15201-15232	2	0.938
NZ_CP042551_1	1.6\|1729973\|32\|NZ_CP042551\|CRISPRCasFinder,CRT	1729973-1730004	32	MK972694	Salmonella phage SE22, complete genome	27485-27516	2	0.938
NZ_CP042551_1	1.6\|1729973\|32\|NZ_CP042551\|CRISPRCasFinder,CRT	1729973-1730004	32	MK770414	Salmonella phage SE16, complete genome	19097-19128	2	0.938
NZ_CP042551_1	1.6\|1729973\|32\|NZ_CP042551\|CRISPRCasFinder,CRT	1729973-1730004	32	NC_013059	Salmonella phage c341, complete genome	37505-37536	2	0.938
NZ_CP042551_1	1.6\|1729973\|32\|NZ_CP042551\|CRISPRCasFinder,CRT	1729973-1730004	32	MK972686	Salmonella phage SF3, complete genome	38551-38582	2	0.938
NZ_CP042551_1	1.6\|1729973\|32\|NZ_CP042551\|CRISPRCasFinder,CRT	1729973-1730004	32	MK972685	Salmonella phage SE10, complete genome	39770-39801	2	0.938
NZ_CP042551_1	1.6\|1729973\|32\|NZ_CP042551\|CRISPRCasFinder,CRT	1729973-1730004	32	MK972687	Salmonella phage SE1 (in:P22virus), complete genome	30044-30075	2	0.938
NZ_CP042551_1	1.6\|1729973\|32\|NZ_CP042551\|CRISPRCasFinder,CRT	1729973-1730004	32	FJ000341	Salmonella phage g341c, complete genome	37505-37536	2	0.938
NZ_CP042551_1	1.6\|1729973\|32\|NZ_CP042551\|CRISPRCasFinder,CRT	1729973-1730004	32	EU570103	Salmonella phage epsilon34, complete genome	39546-39577	2	0.938
NZ_CP042551_1	1.6\|1729973\|32\|NZ_CP042551\|CRISPRCasFinder,CRT	1729973-1730004	32	MK972692	Salmonella phage SE21, complete genome	26621-26652	2	0.938
NZ_CP042551_3	3.1\|1757657\|34\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1757657-1757690	34	NC_047875	Salmonella phage UPF_BP1, complete genome	9721-9754	3	0.912
NZ_CP042551_2	2.9\|1747792\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1747792-1747823	32	MT251347	Klebsiella phage LASTA, complete genome	60146-60177	5	0.844
NZ_CP042551_2	2.9\|1747792\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1747792-1747823	32	MT251348	Klebsiella phage SJM3, complete genome	60146-60177	5	0.844
NZ_CP042551_3	3.5\|1757899\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1757899-1757930	32	NZ_CP035421	Leisingera sp. NJS204 plasmid unnamed4, complete sequence	25247-25278	5	0.844
NZ_CP042551_2	2.10\|1747852\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1747852-1747883	32	MH389777	Dickeya phage vB_DsoM_JA11, complete genome	45842-45873	6	0.812
NZ_CP042551_2	2.10\|1747852\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1747852-1747883	32	MH460462	Dickeya phage vB_DsoM_JA33, complete genome	45832-45863	6	0.812
NZ_CP042551_2	2.10\|1747852\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1747852-1747883	32	MH460460	Dickeya phage vB_DsoM_JA13, complete genome	46037-46068	6	0.812
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	JF974302	Vibrio phage VBpm10, * SEQUENCING IN PROGRESS *, 8 unordered pieces	21036-21067	7	0.781
NZ_CP042551_3	3.5\|1757899\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1757899-1757930	32	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	440509-440540	7	0.781
NZ_CP042551_3	3.5\|1757899\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1757899-1757930	32	NZ_CP009572	Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence	74501-74532	7	0.781
NZ_CP042551_1	1.4\|1729853\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729853-1729884	32	NC_023006	Pseudomonas phage PPpW-3 DNA, complete sequence	36335-36366	8	0.75
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1534665-1534696	8	0.75
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	MG592513	Vibrio phage 1.142.O._10N.261.49.E11, partial genome	26630-26661	8	0.75
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	MG592412	Vibrio phage 1.028.O._10N.286.45.B6, partial genome	26630-26661	8	0.75
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	MG592527	Vibrio phage 1.159.O._10N.261.46.F12, partial genome	26630-26661	8	0.75
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	MG592588	Vibrio phage 1.217.O._10N.261.45.A1, partial genome	26630-26661	8	0.75
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	MG592589	Vibrio phage 1.219.O._10N.261.45.E2, partial genome	26630-26661	8	0.75
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	MG592524	Vibrio phage 1.156.O._10N.261.45.A6, partial genome	26630-26661	8	0.75
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	MG592669	Vibrio phage 2.159.A._10N.261.46.F12, partial genome	26630-26661	8	0.75
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	MG592670	Vibrio phage 2.159.B._10N.261.46.F12, partial genome	26630-26661	8	0.75
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	MG592507	Vibrio phage 1.136.O._10N.261.45.E11, partial genome	26630-26661	8	0.75
NZ_CP042551_2	2.7\|1747671\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1747671-1747702	32	LR794146	Bacteriophage APSE-7 strain HaCipinimaritimae-2836 genome assembly, chromosome: 1	8386-8417	8	0.75
NZ_CP042551_2	2.7\|1747671\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1747671-1747702	32	LR794149	Bacteriophage APSE-7 strain HaCicuneomaculata-2628 genome assembly, chromosome: 1	9304-9335	8	0.75
NZ_CP042551_2	2.7\|1747671\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1747671-1747702	32	NZ_CP012644	Rufibacter tibetensis strain 1351 plasmid 1, complete sequence	160605-160636	8	0.75
NZ_CP042551_3	3.4\|1757839\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1757839-1757870	32	MN694752	Marine virus AFVG_250M643, complete genome	8433-8464	8	0.75
NZ_CP042551_3	3.7\|1758019\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1758019-1758050	32	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	552157-552188	8	0.75
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	62533-62564	9	0.719
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	475099-475130	9	0.719
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	NZ_CP035511	Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence	283146-283177	9	0.719
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	22327-22358	9	0.719
NZ_CP042551_2	2.9\|1747792\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1747792-1747823	32	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	961364-961395	9	0.719
NZ_CP042551_3	3.5\|1757899\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1757899-1757930	32	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	199651-199682	9	0.719
NZ_CP042551_3	3.5\|1757899\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1757899-1757930	32	NZ_CP049252	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed5, complete sequence	17144-17175	9	0.719
NZ_CP042551_1	1.5\|1729913\|32\|NZ_CP042551\|PILER-CR,CRISPRCasFinder,CRT	1729913-1729944	32	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	714186-714217	11	0.656

1. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972693 (Salmonella phage SI23, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

2. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK770415 (Salmonella phage SF11, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

3. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972694 (Salmonella phage SE22, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

4. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK770414 (Salmonella phage SE16, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

5. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to NC_013059 (Salmonella phage c341, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

6. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972686 (Salmonella phage SF3, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

7. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972685 (Salmonella phage SE10, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

8. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972687 (Salmonella phage SE1 (in:P22virus), complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

9. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to FJ000341 (Salmonella phage g341c, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

10. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to EU570103 (Salmonella phage epsilon34, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

11. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972692 (Salmonella phage SE21, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

12. spacer 3.1|1757657|34|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NC_047875 (Salmonella phage UPF_BP1, complete genome) position: , mismatch: 3, identity: 0.912

ctgcatgactggatatccattccggttactgcac	CRISPR spacer
ctgcacgactggatatccattccggtgactgcat	Protospacer
*****.******************** ******.

13. spacer 2.9|1747792|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MT251347 (Klebsiella phage LASTA, complete genome) position: , mismatch: 5, identity: 0.844

ttgcggggtggcgggattccgagcacccgcat	CRISPR spacer
tgcgggggtggcggggttccgagtacccgcat	Protospacer
*   ***********.*******.********

14. spacer 2.9|1747792|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MT251348 (Klebsiella phage SJM3, complete genome) position: , mismatch: 5, identity: 0.844

ttgcggggtggcgggattccgagcacccgcat	CRISPR spacer
tgcgggggtggcggggttccgagtacccgcat	Protospacer
*   ***********.*******.********

15. spacer 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035421 (Leisingera sp. NJS204 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

cgtcggaac--ggcgcatcgctgctgcggcggct	CRISPR spacer
--ccggaacagggcgcagcgctgcggcggcggct	Protospacer
  .******  ****** ****** *********

16. spacer 2.10|1747852|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 6, identity: 0.812

catgc-cgcggagtaactaacgtgatatccctt	CRISPR spacer
-atgcaagcggagtacctaacgtgaaatccatc	Protospacer
 ****  ******** ********* **** *.

17. spacer 2.10|1747852|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 6, identity: 0.812

catgc-cgcggagtaactaacgtgatatccctt	CRISPR spacer
-atgcaagcggagtacctaacgtgaaatccatc	Protospacer
 ****  ******** ********* **** *.

18. spacer 2.10|1747852|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MH460460 (Dickeya phage vB_DsoM_JA13, complete genome) position: , mismatch: 6, identity: 0.812

catgc-cgcggagtaactaacgtgatatccctt	CRISPR spacer
-atgcaagcggagtacctaacgtgaaatccatc	Protospacer
 ****  ******** ********* **** *.

19. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to JF974302 (Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces) position: , mismatch: 7, identity: 0.781

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcattgt	Protospacer
 **********.** ********* *..** *

20. spacer 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 7, identity: 0.781

cgtcggaacggcgcatcgctgctgcggcggct	CRISPR spacer
gcccgcgacgccgcatcgctgctgcgccggct	Protospacer
  .** .*** *************** *****

21. spacer 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009572 (Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence) position: , mismatch: 7, identity: 0.781

-cgtcggaacggcgcatcgctgctgcggcggct	CRISPR spacer
tcgtt-gcacgccgcatcgttgctgcggcggtc	Protospacer
 ***. * *** *******.***********..

22. spacer 1.4|1729853|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NC_023006 (Pseudomonas phage PPpW-3 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

tctaactgccagacttcctggctttctccctc	CRISPR spacer
ttttgctgcccgacttcctggccttctcgccg	Protospacer
*.* .***** ***********.***** *.

23. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccag----cgtgtttt	CRISPR spacer
aacggcgagaccgtcacgcgccaggtgccggg----	Protospacer
 ******* **** **********    ** *

24. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592513 (Vibrio phage 1.142.O._10N.261.49.E11, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

25. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592412 (Vibrio phage 1.028.O._10N.286.45.B6, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

26. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592527 (Vibrio phage 1.159.O._10N.261.46.F12, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

27. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592588 (Vibrio phage 1.217.O._10N.261.45.A1, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

28. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592589 (Vibrio phage 1.219.O._10N.261.45.E2, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

29. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592524 (Vibrio phage 1.156.O._10N.261.45.A6, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

30. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592669 (Vibrio phage 2.159.A._10N.261.46.F12, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

31. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592670 (Vibrio phage 2.159.B._10N.261.46.F12, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

32. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592507 (Vibrio phage 1.136.O._10N.261.45.E11, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

33. spacer 2.7|1747671|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to LR794146 (Bacteriophage APSE-7 strain HaCipinimaritimae-2836 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

tcgtcagcatcatcaggcgcttctgagggctt	CRISPR spacer
atgccagcatcttcaagcgcttctgaggcttg	Protospacer
 .*.******* ***.************ .*

34. spacer 2.7|1747671|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to LR794149 (Bacteriophage APSE-7 strain HaCicuneomaculata-2628 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

tcgtcagcatcatcaggcgcttctgagggctt	CRISPR spacer
atgccagcatcttcaagcgcttctgaggcttg	Protospacer
 .*.******* ***.************ .*

35. spacer 2.7|1747671|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012644 (Rufibacter tibetensis strain 1351 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

tcgtcagcatcatcaggcgcttctgagggctt	CRISPR spacer
tccccagcatcaccaggcgcttctcagctgct	Protospacer
** .********.*********** **   .*

36. spacer 3.4|1757839|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MN694752 (Marine virus AFVG_250M643, complete genome) position: , mismatch: 8, identity: 0.75

ttgca-aatcgaaaatgcgggactgttcaatat	CRISPR spacer
-tacatcatcgaaaatgcggtgctgttcaacga	Protospacer
 *.**  ************* .********..

37. spacer 3.7|1758019|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.75

tagtcacccagcgtttgatgcattacggtgcg	CRISPR spacer
ctttcccgaagcgtttaatgctttacggtgcg	Protospacer
.  ** *  *******.**** **********

38. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 9, identity: 0.719

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ggcggcgacaccgacactcgcccgcgatctca	Protospacer
 .*************** **** ***  .*.

39. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.719

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
tccggcgacaccgacacccggcagcccaggat	Protospacer
* *************** ** **** ..   *

40. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 9, identity: 0.719

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ctcggcgatgccgacacgcgccagcagttcta	Protospacer
. ******..***************.  *.*

41. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
tccggcgacatcgacacgcggcagcccaggat	Protospacer
* ********.********* **** ..   *

42. spacer 2.9|1747792|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 9, identity: 0.719

ttgcggggtggcgggattccgagcacccgcat	CRISPR spacer
ttcgcgggtgccgggattccgagcagccctgc	Protospacer
**   ***** ************** ** ...

43. spacer 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcggaacggcgcatcgctgctgcggcggct	CRISPR spacer
tggcggcacggcgcatcgctgcttcgcccagc	Protospacer
.* *** **************** ** * . .

44. spacer 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049252 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcggaa----cggcgcatcgctgctgcggcggct	CRISPR spacer
----gcgatttgcggcgcatcgctgctggcgcggcc	Protospacer
    * .*    ****************  *****.

45. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.656

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
gggggcgactccgacccgcgccagcgccgcag	Protospacer
 . ****** ***** **********.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

449377 : 506575

uncultured_Caudovirales_phage(21.74%)

transposase,integrase

attL 447555:447570|attR 509765:509780

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
447555:447570	attL	NA	NA	NA	NA
WP_087653979.1\|449377_450367_+\|integrase	site-specific integrase	A0A166YH27	Gordonia_phage	9.7e-06	33.1
WP_032646931.1\|450366_452493_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_006785988.1\|452622_452922_-	DUF305 domain-containing protein	NA	NA	NA	NA
WP_101828536.1\|452999_455201_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.9e-134	45.4
WP_006785990.1\|455709_456168_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_006785991.1\|456430_456784_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	2.2e-21	57.3
WP_006785992.1\|456880_458164_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	75.1
WP_006785993.1\|458213_458642_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	6.2e-50	70.0
WP_023202699.1\|458698_459412_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.2e-95	71.7
WP_006785996.1\|459417_459753_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023202698.1\|459801_461034_-	MFS transporter	NA	NA	NA	NA
WP_020899215.1\|461030_461558_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	7.2e-16	37.1
WP_006786000.1\|461656_462556_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_006786002.1\|462749_463190_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.6e-29	53.3
WP_023202697.1\|463231_464506_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	4.4e-144	60.0
WP_023202696.1\|464555_465590_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.4e-110	57.9
WP_020899213.1\|465742_466288_+	hypothetical protein	NA	NA	NA	NA
WP_020899212.1\|466348_467047_+	hypothetical protein	NA	NA	NA	NA
WP_006786007.1\|467978_468878_+\|integrase	integrase	NA	NA	NA	NA
WP_020899211.1\|468946_469564_-	hypothetical protein	NA	NA	NA	NA
WP_087464944.1\|469968_471115_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.3e-146	91.9
WP_006785878.1\|471179_471812_+	hypothetical protein	NA	NA	NA	NA
WP_006785879.1\|471978_472329_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	1.0e-18	52.4
WP_006785880.1\|472477_472909_-	silver-binding protein SilE	NA	NA	NA	NA
WP_000555738.1\|473158_474634_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.9e-26	29.3
WP_000697968.1\|474626_475307_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.7e-31	36.0
WP_000475503.1\|475496_476882_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246153.1\|476910_477264_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_001485328.1\|477377_478670_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_000574021.1\|478680_481827_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	NA	NA	NA
WP_002436620.1\|481913_482354_+	hypothetical protein	NA	NA	NA	NA
WP_129244003.1\|482451_484923_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	2.2e-83	35.1
WP_000843497.1\|484963_485161_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004118669.1\|485194_485932_-	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	3.6e-13	41.0
WP_001023257.1\|486220_486670_-	copper resistance protein	NA	NA	NA	NA
WP_000925242.1\|486903_488721_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_020899208.1\|488720_489617_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000025662.1\|489656_490037_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_000998778.1\|490041_490971_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|491025_491706_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_006785898.1\|491702_493103_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	3.2e-18	26.6
WP_004388336.1\|493318_493753_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_032646944.1\|494679_495660_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.7e-183	98.5
WP_006781398.1\|496234_496567_-	hypothetical protein	NA	NA	NA	NA
WP_006781400.1\|497080_497446_+	hypothetical protein	NA	NA	NA	NA
WP_006781402.1\|497530_498178_+	hypothetical protein	NA	NA	NA	NA
WP_006781404.1\|498253_498856_+	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_006781405.1\|498923_499271_+	hypothetical protein	NA	NA	NA	NA
WP_006781408.1\|499352_500339_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	4.9e-50	40.7
WP_006781409.1\|500444_501377_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_006781411.1\|501485_502169_+	SAM-dependent DNA methyltransferase	A0A2K9V411	Faecalibacterium_phage	7.9e-31	39.1
WP_006781413.1\|502297_503806_+	ATP-dependent helicase	A0A075DXT4	Acinetobacter_phage	7.0e-48	31.1
WP_006781415.1\|503872_505516_+	Helicase/Zfx / Zfy transcription activation region domain protein	NA	NA	NA	NA
WP_006781417.1\|505573_506575_+\|integrase	site-specific integrase	M1TW19	Prochlorococcus_phage	4.9e-05	21.4
509765:509780	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1281983 : 1327844

Cronobacter_phage(29.09%)

terminase,head,holin,integrase

attL 1281924:1281970|attR 1328025:1328071

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1281924:1281970	attL	NA	NA	NA	NA
WP_139152760.1\|1281983_1283006_-\|integrase	tyrosine-type recombinase/integrase	G8C7S0	Escherichia_phage	6.2e-197	97.6
WP_071888795.1\|1283023_1283359_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_032668696.1\|1283367_1283568_-	hypothetical protein	G8C7S1	Escherichia_phage	7.1e-33	98.5
WP_032104950.1\|1283728_1283926_-	hypothetical protein	S4TWN3	Salmonella_phage	1.1e-12	50.0
WP_047058280.1\|1284010_1284196_-	hypothetical protein	A0A1B0V7L5	Salmonella_phage	5.3e-06	50.0
WP_059452782.1\|1284205_1284445_-	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	1.2e-10	47.4
WP_032668698.1\|1284407_1284761_-	DUF2591 domain-containing protein	R9VYJ6	Serratia_phage	5.9e-14	41.5
WP_059452783.1\|1284839_1285055_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	2.2e-16	62.9
WP_032647498.1\|1285146_1285347_-	hypothetical protein	NA	NA	NA	NA
WP_080337312.1\|1285343_1285616_-	hypothetical protein	K7P7M4	Enterobacteria_phage	4.2e-20	57.5
WP_151608580.1\|1285612_1285807_-	hypothetical protein	NA	NA	NA	NA
WP_049108575.1\|1285826_1286321_-	hypothetical protein	A0A291AXJ6	Shigella_phage	3.1e-29	48.4
WP_151608472.1\|1286317_1286869_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	1.2e-53	57.7
WP_047058769.1\|1287029_1287458_-	hypothetical protein	M9NYX4	Enterobacteria_phage	1.5e-72	95.8
WP_059452769.1\|1287454_1288135_-	YqaJ viral recombinase family protein	M9NZE1	Enterobacteria_phage	3.1e-128	96.0
WP_059452768.1\|1288131_1289049_-	recombinase RecT	M9NZA6	Enterobacteria_phage	3.9e-158	89.8
WP_059452767.1\|1289058_1289337_-	host nuclease inhibitor GamL	A0A0P0ZFG3	Escherichia_phage	4.8e-35	78.5
WP_001752704.1\|1289415_1289622_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	3.6e-32	100.0
WP_022651079.1\|1289773_1290022_-	hypothetical protein	NA	NA	NA	NA
WP_023313997.1\|1290788_1290986_+	hypothetical protein	G8C7T7	Escherichia_phage	9.2e-25	93.8
WP_032655965.1\|1291121_1292069_-	hypothetical protein	A9YX09	Burkholderia_phage	2.0e-61	42.3
WP_059452766.1\|1292207_1292918_-	helix-turn-helix domain-containing protein	K7P8B2	Enterobacteria_phage	1.4e-91	70.6
WP_023306036.1\|1293021_1293210_+	hypothetical protein	A0A2R2Z333	Escherichia_phage	1.5e-08	51.8
WP_023306037.1\|1293296_1293581_+	hypothetical protein	Q5G8T2	Enterobacteria_phage	5.2e-21	57.4
WP_063142625.1\|1293768_1294854_+	DNA replication protein	E5AGE9	Erwinia_phage	8.0e-86	45.6
WP_063938395.1\|1294850_1296224_+	replicative DNA helicase	E5AGF0	Erwinia_phage	7.6e-166	62.9
WP_072258163.1\|1296213_1296528_+	protein ren	M1FPD5	Enterobacteria_phage	5.6e-16	50.5
WP_059452800.1\|1296524_1296725_+	hypothetical protein	NA	NA	NA	NA
WP_139153270.1\|1298065_1298731_+	hypothetical protein	L0AQZ0	Klebsiella_phage	1.6e-41	37.1
WP_032647533.1\|1298924_1299374_+	recombination protein NinB	I6R9D0	Salmonella_phage	2.5e-33	47.2
WP_063133509.1\|1299366_1299537_+	hypothetical protein	G8C7V4	Escherichia_phage	1.4e-18	84.9
WP_059452757.1\|1299500_1300001_+	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	2.3e-35	50.7
WP_058647991.1\|1299994_1300639_+	hypothetical protein	S4TSR3	Salmonella_phage	2.1e-73	69.6
WP_015705894.1\|1300635_1300752_+	hypothetical protein	NA	NA	NA	NA
WP_059452756.1\|1300748_1301438_+	antiterminator	I6PDF8	Cronobacter_phage	2.9e-57	51.1
WP_001514183.1\|1301717_1302119_+	hypothetical protein	NA	NA	NA	NA
WP_001514184.1\|1302115_1302391_+\|holin	phage holin family protein	S4TNV9	Salmonella_phage	5.8e-09	41.0
WP_023296427.1\|1302393_1302936_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	1.6e-74	70.4
WP_058655468.1\|1302932_1303211_+	hypothetical protein	NA	NA	NA	NA
WP_059452755.1\|1303161_1303356_+	hypothetical protein	K7PM01	Enterobacterial_phage	1.4e-17	90.9
WP_057059036.1\|1303680_1304199_+	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	4.6e-92	98.2
WP_057059037.1\|1304505_1304724_+	hypothetical protein	NA	NA	NA	NA
WP_046401556.1\|1304727_1305378_+	hypothetical protein	G8C7P2	Escherichia_phage	1.7e-104	91.2
WP_057059038.1\|1305374_1306922_+\|terminase	terminase	G8C7P3	Escherichia_phage	1.6e-289	88.8
WP_057059039.1\|1306933_1308385_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	2.7e-198	74.8
WP_074135794.1\|1308332_1309319_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.2e-111	66.7
WP_044704353.1\|1309350_1309545_+	hypothetical protein	NA	NA	NA	NA
WP_151608473.1\|1309637_1311026_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	9.7e-153	59.0
WP_032648633.1\|1311029_1311464_+	hypothetical protein	F1C5E0	Cronobacter_phage	5.1e-52	74.3
WP_048245857.1\|1311473_1312571_+	hypothetical protein	F1C5E1	Cronobacter_phage	2.6e-161	77.7
WP_048245855.1\|1312580_1312946_+	hypothetical protein	NA	NA	NA	NA
WP_048245854.1\|1312948_1313329_+	hypothetical protein	F1C5E2	Cronobacter_phage	2.0e-28	53.7
WP_059452717.1\|1313328_1313502_+	hypothetical protein	I6R0P9	Salmonella_phage	1.2e-12	53.6
WP_151608475.1\|1313501_1313858_+	hypothetical protein	G0ZNE2	Cronobacter_phage	3.0e-26	55.6
WP_059452793.1\|1313860_1314268_+	hypothetical protein	A0A291AXD9	Shigella_phage	2.3e-30	51.1
WP_048984796.1\|1314264_1314648_+	hypothetical protein	F1C5E4	Cronobacter_phage	8.9e-40	63.8
WP_151608477.1\|1314711_1315455_+	DNA breaking-rejoining protein	F1C5E5	Cronobacter_phage	1.3e-71	85.4
WP_045307639.1\|1315514_1316198_+	hypothetical protein	F1C5E8	Cronobacter_phage	4.6e-79	61.5
WP_151608479.1\|1316256_1319739_+	tape measure protein	R9TMK1	Aeromonas_phage	4.8e-257	62.8
WP_032647561.1\|1319738_1319975_+	hypothetical protein	NA	NA	NA	NA
WP_151608481.1\|1320013_1320511_+	hypothetical protein	F1C5F0	Cronobacter_phage	2.5e-87	90.3
WP_059512182.1\|1320510_1320981_+	hypothetical protein	F1C5F1	Cronobacter_phage	2.4e-79	92.9
WP_151608483.1\|1320990_1321383_+	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	3.9e-67	92.7
WP_151608484.1\|1321369_1323847_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	0.0e+00	92.7
WP_151608486.1\|1323905_1326074_+	hypothetical protein	F1C5A8	Cronobacter_phage	1.1e-38	60.6
WP_151608488.1\|1326164_1327136_+	acyltransferase family protein	NA	NA	NA	NA
WP_151608490.1\|1327281_1327521_+	hypothetical protein	K7P7E2	Enterobacteria_phage	5.9e-26	69.2
WP_151608492.1\|1327520_1327844_+	hypothetical protein	K7PGV5	Enterobacterial_phage	3.5e-21	48.6
1328025:1328071	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1987306 : 2048925

Enterobacterial_phage(29.09%)

terminase,head,integrase,holin,capsid,portal,tail,tRNA

attL 1977723:1977740|attR 2057879:2057896

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1977723:1977740	attL	NA	NA	NA	NA
WP_032103856.1\|1987306_1988419_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_032648023.1\|1988459_1988933_-	NUDIX hydrolase	NA	NA	NA	NA
WP_032648025.1\|1988932_1989595_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_003857898.1\|1989712_1990963_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	7.9e-21	94.4
WP_022650806.1\|1991038_1991284_+	YmjA family protein	NA	NA	NA	NA
WP_023296321.1\|1991288_1992788_-	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_071524166.1\|1992912_1993005_-	stress response membrane protein YncL	NA	NA	NA	NA
WP_003857896.1\|1993376_1993625_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_015570794.1\|1993678_1993753_-	protein YoaJ	NA	NA	NA	NA
WP_015570793.1\|1993753_1993852_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_032648028.1\|1993897_1994926_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.5e-12	32.1
WP_015570791.1\|1995237_1995492_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_015570790.1\|1995572_1995878_+	hypothetical protein	NA	NA	NA	NA
WP_015570789.1\|1995878_1996223_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_032648030.1\|1996374_1997082_+	CTP synthase	NA	NA	NA	NA
WP_017384696.1\|1997113_1998301_-	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_017384695.1\|1998400_1999192_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003857881.1\|1999175_1999622_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_023296324.1\|1999728_2001765_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_015570785.1\|2001780_2003112_-	sugar (Glycoside-Pentoside-Hexuronide) transporter	NA	NA	NA	NA
WP_015570783.1\|2003520_2004021_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_032668752.1\|2004240_2005383_-\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	1.9e-93	49.0
WP_022650818.1\|2005357_2005621_-	hypothetical protein	NA	NA	NA	NA
WP_059452727.1\|2006282_2006756_-	hypothetical protein	M9NZE4	Enterobacteria_phage	2.6e-17	46.8
WP_059452726.1\|2006752_2006989_-	hypothetical protein	NA	NA	NA	NA
WP_059452725.1\|2006990_2007515_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.7e-12	34.4
WP_059452724.1\|2007511_2008156_-	hypothetical protein	NA	NA	NA	NA
WP_104879864.1\|2008639_2009665_-	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	1.3e-165	89.2
WP_109923562.1\|2009661_2010075_-	hypothetical protein	K7PJS4	Enterobacterial_phage	3.1e-54	83.2
WP_059443608.1\|2010123_2010444_-	hypothetical protein	K7P7N6	Enterobacteria_phage	6.1e-26	55.7
WP_063159425.1\|2011026_2011335_-	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	2.6e-10	40.5
WP_063159426.1\|2011631_2012228_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_063159427.1\|2012336_2012567_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.1e-05	40.5
WP_063159428.1\|2012592_2013063_+	hypothetical protein	K7PJS5	Enterobacterial_phage	5.2e-74	92.9
WP_072044687.1\|2013303_2013489_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	5.2e-14	69.2
WP_063159429.1\|2013472_2014426_+	hypothetical protein	K7PLZ7	Enterobacterial_phage	1.1e-168	92.1
WP_059443610.1\|2014422_2014917_+	hypothetical protein	NA	NA	NA	NA
WP_059452722.1\|2014916_2015576_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	2.2e-99	79.8
WP_022650831.1\|2015572_2015800_+	hypothetical protein	NA	NA	NA	NA
WP_032103831.1\|2015796_2016117_+	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	1.2e-42	75.5
WP_032103830.1\|2016113_2016503_+	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	1.7e-67	94.6
WP_032103828.1\|2016499_2017489_+	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	2.4e-166	85.1
WP_032103827.1\|2017501_2018080_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.5e-46	54.4
WP_032103826.1\|2018235_2018631_+	membrane protein	K7PHB9	Enterobacterial_phage	3.8e-62	96.9
WP_032103824.1\|2018617_2018899_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.8e-43	93.5
WP_059452721.1\|2018898_2019528_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	3.3e-100	85.2
WP_059452720.1\|2019529_2019805_+	hypothetical protein	G8C7W1	Escherichia_phage	3.5e-30	82.0
WP_045334178.1\|2019761_2019956_+	hypothetical protein	K7PM01	Enterobacterial_phage	3.7e-18	87.8
WP_072258111.1\|2020327_2020975_+	DUF1983 domain-containing protein	G8C7Q4	Escherichia_phage	8.2e-62	75.5
WP_032668519.1\|2021229_2022687_+	glycosyl transferase	K7PKP3	Enterobacterial_phage	6.9e-218	73.6
WP_032648738.1\|2022798_2023020_-	hypothetical protein	Q38575	Escherichia_phage	3.7e-22	71.2
WP_032648736.1\|2023184_2023778_+	hypothetical protein	S4TR53	Salmonella_phage	1.8e-100	85.8
WP_032648734.1\|2023770_2024139_+	HNH endonuclease	S4TTG9	Salmonella_phage	3.7e-59	91.8
WP_000954404.1\|2024244_2024739_+\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	1.7e-83	100.0
WP_087654008.1\|2024735_2026397_+\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	0.0e+00	98.4
WP_032668517.1\|2026455_2028390_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	95.0
WP_032668515.1\|2028593_2029949_+\|portal	phage portal protein	S4TTG7	Salmonella_phage	1.7e-258	98.4
WP_032648723.1\|2029945_2030860_+\|portal	phage portal protein	S4TNN1	Salmonella_phage	4.3e-109	76.9
WP_032648721.1\|2030856_2031183_+\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	3.4e-48	90.7
WP_032648717.1\|2031191_2031542_+\|head	phage head closure protein	S4TND9	Salmonella_phage	8.9e-55	92.2
WP_022648887.1\|2031538_2031988_+	HK97 gp10 family phage protein	K7P6X4	Enterobacteria_phage	2.9e-74	98.7
WP_063922089.1\|2031984_2032332_+	DUF3168 domain-containing protein	Q9MCS8	Enterobacteria_phage	1.5e-57	98.3
WP_006809155.1\|2032391_2032835_+	hypothetical protein	K7PHL2	Enterobacterial_phage	4.6e-72	93.8
WP_001549114.1\|2032843_2033227_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
WP_032619858.1\|2033235_2033514_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.8e-42	95.7
WP_047719378.1\|2033635_2033872_+	cor protein	Q5G8V7	Enterobacteria_phage	9.0e-27	68.8
WP_032668968.1\|2034079_2037583_+\|tail	phage tail tape measure protein	K7P7L6	Enterobacteria_phage	0.0e+00	71.2
WP_151608510.1\|2037585_2037924_+\|tail	phage tail protein	K7PHL4	Enterobacterial_phage	1.1e-62	98.2
WP_023305932.1\|2037920_2038679_+\|tail	phage minor tail protein L	G8C7J7	Escherichia_phage	6.5e-143	95.6
WP_032668965.1\|2038680_2039391_+	peptidase P60	K7PGV2	Enterobacterial_phage	3.2e-136	91.1
WP_072026015.1\|2039420_2039762_+	hypothetical protein	K7PLP0	Enterobacteria_phage	1.4e-52	90.3
WP_032668962.1\|2039805_2040411_+\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	1.6e-99	95.5
WP_032668960.1\|2040464_2044010_+	DUF1983 domain-containing protein	K7PJL6	Enterobacteria_phage	0.0e+00	92.1
WP_032634448.1\|2044054_2044369_+	hypothetical protein	A0A2P0WA17	Enterobacter_phage	7.8e-34	67.6
WP_032648708.1\|2044369_2045041_+	hypothetical protein	A0A2P0WA07	Enterobacter_phage	7.6e-87	73.1
WP_032648706.1\|2045148_2045382_+	hypothetical protein	E4WL42	Enterobacteria_phage	8.6e-30	75.3
WP_063940042.1\|2045441_2046740_+	hypothetical protein	G8C7K5	Escherichia_phage	1.5e-152	65.0
WP_022650864.1\|2046822_2047062_+	hypothetical protein	K7P7N3	Enterobacteria_phage	9.1e-27	72.2
WP_032668956.1\|2047061_2047382_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.4e-25	54.7
WP_032104144.1\|2047641_2048925_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.1e-09	28.3
2057879:2057896	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2585467 : 2628281

Enterobacteria_phage(25.0%)

plate,transposase,tRNA,integrase

attL 2601271:2601285|attR 2624168:2624182

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012695466.1\|2585467_2586391_-\|transposase	IS5-like element IS903B family transposase	Q1MVF0	Enterobacteria_phage	4.6e-175	98.7
WP_001567369.1\|2586510_2587143_+	hypothetical protein	NA	NA	NA	NA
WP_001567368.1\|2587171_2588575_-\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_151608524.1\|2588578_2588857_+	TonB-dependent receptor	A0A1B0VCF0	Salmonella_phage	9.0e-18	68.9
WP_003856981.1\|2588979_2589648_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_032103593.1\|2589907_2590942_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_017382277.1\|2591008_2591584_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_151608526.1\|2591732_2592251_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_032103594.1\|2592247_2592697_+	DMT family transporter	NA	NA	NA	NA
WP_017382275.1\|2592700_2592934_-	YdcY family protein	NA	NA	NA	NA
WP_017382274.1\|2593035_2594634_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_032648417.1\|2594916_2596254_+	hypothetical protein	NA	NA	NA	NA
WP_032619621.1\|2596258_2599240_+	virulence factor SrfB	NA	NA	NA	NA
WP_032648418.1\|2599236_2601411_+	virulence effector SrfC	NA	NA	NA	NA
2601271:2601285	attL	NA	NA	NA	NA
WP_032648420.1\|2601444_2602203_-	alpha/beta hydrolase	A0A1D8EUH4	Mycobacterium_phage	2.0e-06	33.0
WP_003856960.1\|2602289_2602463_-	GhoT/OrtT family toxin	NA	NA	NA	NA
WP_015570441.1\|2602706_2603033_+	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_003856958.1\|2603060_2603414_+	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_003856955.1\|2603417_2603600_+	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_032668860.1\|2603635_2605060_-	aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_015570440.1\|2605199_2606624_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_017693360.1\|2606706_2606895_-	hypothetical protein	NA	NA	NA	NA
WP_015570438.1\|2607288_2608683_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_015570437.1\|2608688_2609699_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_017693358.1\|2609698_2609827_+	DUF2474 domain-containing protein	NA	NA	NA	NA
WP_015570436.1\|2609950_2610388_+	heat shock protein HslJ	NA	NA	NA	NA
WP_003856935.1\|2610389_2610656_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_032648422.1\|2610926_2614451_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_032648423.1\|2614838_2615957_+	porin OmpS2	Q1MVN1	Enterobacteria_phage	2.7e-121	60.5
WP_032648425.1\|2615991_2616414_-	GFA family protein	NA	NA	NA	NA
WP_003856931.1\|2616417_2616615_-	hypothetical protein	NA	NA	NA	NA
WP_123912599.1\|2616835_2617027_-	hypothetical protein	NA	NA	NA	NA
WP_071524108.1\|2617034_2617235_+\|integrase	tyrosine-type recombinase/integrase	A0A0U2JGI6	Escherichia_phage	1.8e-20	71.7
WP_001186974.1\|2617284_2618220_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.2e-140	94.9
WP_032648427.1\|2618263_2619637_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.8e-51	31.9
WP_100160517.1\|2619985_2620183_+	hypothetical protein	NA	NA	NA	NA
WP_006810774.1\|2620121_2621105_-	zinc transporter ZntB	NA	NA	NA	NA
WP_080344888.1\|2621195_2622326_-	chemoreceptor protein	A0A2H4J162	uncultured_Caudovirales_phage	2.6e-10	28.6
WP_032648431.1\|2622642_2623131_-	hypothetical protein	NA	NA	NA	NA
WP_032648433.1\|2623159_2624476_-	membrane protein	NA	NA	NA	NA
2624168:2624182	attR	NA	NA	NA	NA
WP_015570427.1\|2624499_2624955_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_032648436.1\|2624954_2625500_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_032648437.1\|2625477_2626563_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_032648439.1\|2626526_2628281_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_5

2882869 : 3072376

229

Enterobacteria_phage(19.11%)

head,terminase,coat,protease,integrase,holin,portal,capsid,lysis,tail,tRNA

attL 2907895:2907911|attR 3050292:3050308

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003859899.1\|2882869_2883751_-\|protease	protease HtpX	NA	NA	NA	NA
WP_015570296.1\|2883944_2885993_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	7.8e-82	32.6
WP_003859895.1\|2886012_2886699_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_006811006.1\|2886795_2887293_-	GAF domain-containing protein	NA	NA	NA	NA
WP_020480541.1\|2887425_2888709_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_017693254.1\|2888677_2891311_+	PqiB family protein	NA	NA	NA	NA
WP_017693253.1\|2891367_2892831_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_003859885.1\|2892937_2893177_+	YebV family protein	NA	NA	NA	NA
WP_032648594.1\|2893211_2893856_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	2.1e-54	48.8
WP_032648596.1\|2894023_2895004_+	DUF535 domain-containing protein	NA	NA	NA	NA
WP_032648598.1\|2895433_2896702_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.9e-229	90.8
WP_032648600.1\|2896701_2897007_-	hypothetical protein	I6PCW5	Cronobacter_phage	1.0e-14	39.6
WP_032648602.1\|2897119_2897482_+	GtrA family protein	U5P0S6	Shigella_phage	2.0e-49	84.2
WP_032648604.1\|2897478_2898420_+	glycosyltransferase family 2 protein	U5P087	Shigella_phage	7.2e-160	91.4
WP_032648605.1\|2898416_2899898_+	hypothetical protein	NA	NA	NA	NA
WP_032668808.1\|2899927_2901943_-	hypothetical protein	F1C5A8	Cronobacter_phage	5.5e-40	61.8
WP_032668806.1\|2902001_2904479_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	92.1
WP_032648608.1\|2904465_2904858_-	NlpC/P60 family protein	F1C5F2	Cronobacter_phage	1.6e-65	87.9
WP_032648609.1\|2904867_2905338_-	hypothetical protein	F1C5F1	Cronobacter_phage	8.2e-80	93.6
WP_032648610.1\|2905337_2905835_-	hypothetical protein	F1C5F0	Cronobacter_phage	3.5e-89	91.5
WP_032648612.1\|2905834_2908765_-\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	1.8e-161	46.8
2907895:2907911	attL	NA	NA	NA	NA
WP_048983890.1\|2908819_2909176_-	hypothetical protein	A0A0P0IE45	Acinetobacter_phage	5.9e-14	47.0
WP_032648615.1\|2909175_2909556_-	hypothetical protein	NA	NA	NA	NA
WP_032648617.1\|2909603_2910296_-	hypothetical protein	G0ZNE7	Cronobacter_phage	1.8e-54	49.5
WP_045324988.1\|2910353_2911097_-	Ig domain-containing protein	F1C5E5	Cronobacter_phage	5.9e-72	86.0
WP_032648620.1\|2911160_2911544_-	hypothetical protein	F1C5E4	Cronobacter_phage	2.3e-40	64.6
WP_032648622.1\|2911540_2912005_-	hypothetical protein	A0A2P1MXA4	Escherichia_phage	2.2e-29	43.5
WP_032648626.1\|2912007_2912364_-	hypothetical protein	G0ZNE2	Cronobacter_phage	6.1e-27	55.6
WP_023300380.1\|2912363_2912537_-	hypothetical protein	I6R0P9	Salmonella_phage	5.1e-11	48.2
WP_032648628.1\|2912536_2912917_-	hypothetical protein	F1C5E2	Cronobacter_phage	2.4e-29	55.3
WP_032648630.1\|2912919_2913285_-	hypothetical protein	NA	NA	NA	NA
WP_014884000.1\|2913294_2914392_-	hypothetical protein	F1C5E1	Cronobacter_phage	7.6e-161	77.7
WP_032648633.1\|2914401_2914836_-	hypothetical protein	F1C5E0	Cronobacter_phage	5.1e-52	74.3
WP_032648636.1\|2914839_2916228_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.0e-153	59.2
WP_032648637.1\|2916273_2916630_+	hypothetical protein	NA	NA	NA	NA
WP_050594995.1\|2916817_2917465_-	hypothetical protein	NA	NA	NA	NA
WP_045324987.1\|2917532_2918540_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.4e-113	67.7
WP_032668796.1\|2918457_2919909_-	phage protein	F1C5D7	Cronobacter_phage	8.1e-118	50.1
WP_032668795.1\|2919920_2921393_-	phage DNA Packaging protein	G0ZND4	Cronobacter_phage	5.5e-255	86.3
WP_032648641.1\|2921379_2921940_-\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	2.0e-77	76.3
WP_123912597.1\|2921961_2922483_+	hypothetical protein	NA	NA	NA	NA
WP_032648644.1\|2922586_2922994_-	hypothetical protein	NA	NA	NA	NA
WP_072258132.1\|2923057_2923495_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	3.7e-42	65.0
WP_032648647.1\|2923536_2923977_-	lysozyme	A0A0M4R365	Salmonella_phage	1.4e-57	76.5
WP_122008274.1\|2923963_2924269_-\|holin	holin	E7C9S8	Salmonella_phage	1.1e-43	86.1
WP_032648648.1\|2924683_2925373_-	antiterminator	I6PDF8	Cronobacter_phage	2.5e-56	51.5
WP_087654012.1\|2925369_2925486_-	hypothetical protein	NA	NA	NA	NA
WP_032648649.1\|2925482_2925845_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.6e-51	82.2
WP_032648651.1\|2925841_2926132_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	1.8e-45	90.6
WP_032648654.1\|2926124_2926295_-	hypothetical protein	K7P7K0	Enterobacteria_phage	7.7e-20	94.3
WP_032648655.1\|2926294_2926750_-	hypothetical protein	I6PD71	Cronobacter_phage	5.4e-60	66.9
WP_032648657.1\|2927162_2927651_-	hypothetical protein	NA	NA	NA	NA
WP_123912596.1\|2927651_2928554_-	hypothetical protein	NA	NA	NA	NA
WP_032648661.1\|2928803_2929493_-	phage replication protein P	G8C7U6	Escherichia_phage	1.3e-126	95.2
WP_032648664.1\|2929489_2930398_-	replication protein	K7PGZ0	Enterobacteria_phage	2.9e-158	99.3
WP_032648667.1\|2930483_2931026_-	hypothetical protein	M9NZI6	Enterobacteria_phage	3.2e-75	79.4
WP_032648669.1\|2931055_2931283_-	hypothetical protein	A0A2I6PIE5	Escherichia_phage	1.4e-16	57.7
WP_032648671.1\|2931318_2932074_+	helix-turn-helix transcriptional regulator	G8C7L8	Escherichia_phage	2.1e-77	59.6
WP_032668793.1\|2932085_2932673_+	hypothetical protein	NA	NA	NA	NA
WP_048983716.1\|2933185_2933374_+	hypothetical protein	NA	NA	NA	NA
WP_045325037.1\|2933838_2934018_+	hypothetical protein	Q3HQW9	Burkholderia_phage	9.6e-05	55.1
WP_006809788.1\|2934169_2934379_+	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	6.7e-34	95.7
WP_032647507.1\|2934451_2934736_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.7e-48	96.8
WP_032648679.1\|2934754_2935600_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.1e-70	61.6
WP_032648682.1\|2935596_2936277_+	YqaJ viral recombinase family protein	M9NZE1	Enterobacteria_phage	7.1e-125	93.8
WP_032647502.1\|2936593_2937145_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	9.7e-56	59.4
WP_006176198.1\|2937141_2937360_+	hypothetical protein	NA	NA	NA	NA
WP_080337312.1\|2937356_2937629_+	hypothetical protein	K7P7M4	Enterobacteria_phage	4.2e-20	57.5
WP_032647498.1\|2937625_2937826_+	hypothetical protein	NA	NA	NA	NA
WP_032648685.1\|2937917_2938133_+	TraR/DksA family transcriptional regulator	A0A0P0ZCX5	Stx2-converting_phage	3.2e-15	61.4
WP_032648687.1\|2938421_2939174_+	methyltransferase	A0A1P8VVC9	Erythrobacter_phage	9.9e-35	41.4
WP_023300430.1\|2939333_2939606_+	hypothetical protein	A0A2H4J5E1	uncultured_Caudovirales_phage	2.9e-29	64.4
WP_023300431.1\|2939574_2940660_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.6e-147	68.4
WP_003859787.1\|2940982_2941321_-	YebY family protein	NA	NA	NA	NA
WP_017693249.1\|2941337_2942207_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_032648690.1\|2942208_2942580_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_003859784.1\|2942717_2942948_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	7.0e-16	61.8
WP_015570289.1\|2943059_2943710_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_015570288.1\|2943734_2944397_+	exodeoxyribonuclease X	NA	NA	NA	NA
WP_032648692.1\|2944378_2946454_-	oligopeptidase B	NA	NA	NA	NA
WP_015570286.1\|2946529_2947180_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_032648694.1\|2947351_2948530_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_003859774.1\|2948604_2949246_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_017384346.1\|2949285_2951097_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_003859771.1\|2951330_2952806_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	6.0e-76	36.2
WP_003859769.1\|2953162_2954032_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_003859767.1\|2954146_2955589_+	pyruvate kinase	NA	NA	NA	NA
WP_015570283.1\|2955632_2956604_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_003859762.1\|2956721_2958041_-	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	40.9
WP_032650053.1\|2958056_2959001_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_023296807.1\|2959078_2959834_+	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	8.8e-15	29.8
WP_015570280.1\|2959830_2960616_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_003859753.1\|2960668_2961679_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.4e-07	29.9
WP_003859751.1\|2961687_2962302_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_003859749.1\|2962382_2962904_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
WP_003859747.1\|2962938_2963679_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003859745.1\|2963706_2964150_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_017384352.1\|2964151_2965924_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_032648699.1\|2966186_2966753_+	hydrolase	NA	NA	NA	NA
WP_032668791.1\|2967117_2967384_+	DinI family protein	K7PKM2	Enterobacterial_phage	1.5e-38	93.2
WP_063842612.1\|2967479_2968241_-	hypothetical protein	G8C7K5	Escherichia_phage	4.0e-92	67.6
WP_032648706.1\|2968828_2969062_-	hypothetical protein	E4WL42	Enterobacteria_phage	8.6e-30	75.3
WP_032648708.1\|2969169_2969841_-	hypothetical protein	A0A2P0WA07	Enterobacter_phage	7.6e-87	73.1
WP_032634448.1\|2969841_2970156_-	hypothetical protein	A0A2P0WA17	Enterobacter_phage	7.8e-34	67.6
WP_032648710.1\|2970200_2973761_-	DUF1983 domain-containing protein	Q9MCU0	Escherichia_phage	0.0e+00	69.9
WP_032648711.1\|2973813_2974401_-\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	6.1e-48	47.4
WP_022648880.1\|2974400_2975111_-	NlpC/P60 family protein	F1C573	Cronobacter_phage	1.5e-96	69.8
WP_022648881.1\|2975113_2975872_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	2.3e-95	63.6
WP_022648882.1\|2975868_2976207_-\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	7.3e-38	59.8
WP_032668973.1\|2976209_2979512_-\|tail	phage tail tape measure protein	K7P7L6	Enterobacteria_phage	0.0e+00	85.2
WP_059452786.1\|2979569_2979911_-	hypothetical protein	NA	NA	NA	NA
WP_032619858.1\|2979966_2980245_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.8e-42	95.7
WP_001549114.1\|2980253_2980637_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
WP_006809155.1\|2980645_2981089_-	hypothetical protein	K7PHL2	Enterobacterial_phage	4.6e-72	93.8
WP_063922089.1\|2981148_2981496_-	DUF3168 domain-containing protein	Q9MCS8	Enterobacteria_phage	1.5e-57	98.3
WP_022648887.1\|2981492_2981942_-	HK97 gp10 family phage protein	K7P6X4	Enterobacteria_phage	2.9e-74	98.7
WP_032648717.1\|2981938_2982289_-\|head	phage head closure protein	S4TND9	Salmonella_phage	8.9e-55	92.2
WP_032648721.1\|2982297_2982624_-\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	3.4e-48	90.7
WP_032648723.1\|2982620_2983535_-\|portal	phage portal protein	S4TNN1	Salmonella_phage	4.3e-109	76.9
WP_032668515.1\|2983531_2984887_-\|portal	phage portal protein	S4TTG7	Salmonella_phage	1.7e-258	98.4
WP_032668517.1\|2985090_2987025_-\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	95.0
WP_087654008.1\|2987083_2988745_-\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	0.0e+00	98.4
WP_000954404.1\|2988741_2989236_-\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	1.7e-83	100.0
WP_032648734.1\|2989341_2989710_-	HNH endonuclease	S4TTG9	Salmonella_phage	3.7e-59	91.8
WP_032648736.1\|2989702_2990296_-	hypothetical protein	S4TR53	Salmonella_phage	1.8e-100	85.8
WP_032648738.1\|2990460_2990682_+	hypothetical protein	Q38575	Escherichia_phage	3.7e-22	71.2
WP_032668768.1\|2990793_2992251_-	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	1.0e-216	73.6
WP_151608536.1\|2992262_2992913_-	DUF1983 domain-containing protein	K7PH02	Enterobacteria_phage	9.5e-34	79.3
WP_047719375.1\|2993214_2993403_-	hypothetical protein	A0A2I7RUD6	Vibrio_phage	2.7e-18	77.0
WP_047719374.1\|2993432_2993624_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.2e-18	74.6
WP_074128402.1\|2993574_2993850_-	hypothetical protein	G8C7W1	Escherichia_phage	7.8e-30	78.0
WP_032668767.1\|2993857_2994487_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	5.4e-103	89.0
WP_032668766.1\|2994486_2994768_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.0e-41	91.4
WP_032668765.1\|2994754_2995150_-	membrane protein	K7PHB9	Enterobacterial_phage	7.7e-63	97.7
WP_032668764.1\|2995305_2995884_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.3e-45	53.3
WP_032668763.1\|2995896_2996886_-	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	8.7e-180	90.0
WP_022650833.1\|2996882_2997272_-	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	9.2e-69	96.1
WP_032668762.1\|2997268_2997592_-	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	2.5e-43	78.8
WP_032668761.1\|2997588_2998248_-	DNA methyltransferase	I6PDF5	Cronobacter_phage	6.5e-99	79.1
WP_032668760.1\|2998247_2998742_-	hypothetical protein	NA	NA	NA	NA
WP_032668759.1\|2998738_2999665_-	transcriptional regulator	K7PLZ7	Enterobacterial_phage	3.4e-69	55.6
WP_044703888.1\|2999627_2999834_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.9e-13	69.2
WP_072026008.1\|2999997_3000558_-	hypothetical protein	A5LH68	Enterobacteria_phage	1.6e-45	51.1
WP_032668783.1\|3000574_3000778_-	hypothetical protein	A0A1W6JP24	Morganella_phage	1.2e-16	60.0
WP_032668758.1\|3000878_3001511_+	helix-turn-helix domain-containing protein	A0A1W6JP50	Morganella_phage	1.1e-50	56.7
WP_047719372.1\|3001889_3002342_-	hypothetical protein	NA	NA	NA	NA
WP_032668756.1\|3003058_3004081_+	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	8.7e-167	89.5
WP_050594993.1\|3004067_3004487_+	hypothetical protein	K7PHA5	Enterobacterial_phage	1.1e-22	50.0
WP_050594992.1\|3004483_3005128_+	hypothetical protein	NA	NA	NA	NA
WP_080346148.1\|3005052_3005328_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_050594991.1\|3005324_3005597_+	ead/Ea22-like family protein	K7P6T4	Enterobacteria_phage	2.4e-07	50.8
WP_032668754.1\|3005598_3005907_+	hypothetical protein	O64351	Escherichia_phage	4.6e-47	90.2
WP_032668753.1\|3005903_3006170_+	hypothetical protein	M9NZE4	Enterobacteria_phage	3.8e-13	93.0
WP_022650818.1\|3006205_3006469_+	hypothetical protein	NA	NA	NA	NA
WP_032668752.1\|3006443_3007586_+\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	1.9e-93	49.0
WP_032668956.1\|3007965_3008286_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.4e-25	54.7
WP_022650864.1\|3008285_3008525_-	hypothetical protein	K7P7N3	Enterobacteria_phage	9.1e-27	72.2
WP_047719380.1\|3008607_3009906_-	hypothetical protein	G8C7K5	Escherichia_phage	1.0e-151	64.8
WP_032104413.1\|3009965_3010931_-	hypothetical protein	G1CSU0	Cronobacter_virus	7.4e-59	40.2
WP_151608538.1\|3010932_3014514_-	DUF1983 domain-containing protein	Q9MCR7	Enterobacteria_phage	0.0e+00	91.0
WP_045618223.1\|3014564_3015155_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	1.4e-97	93.4
WP_048984735.1\|3015142_3015874_-	peptidase P60	K7PJX1	Enterobacterial_phage	2.1e-143	97.0
WP_151608540.1\|3015875_3016634_-\|tail	phage minor tail protein L	G8C7J7	Escherichia_phage	9.4e-142	95.2
WP_017384364.1\|3016630_3016969_-\|tail	phage tail protein	K7PHL4	Enterobacterial_phage	5.0e-63	99.1
WP_151608542.1\|3016968_3020475_-\|tail	phage tail tape measure protein	K7P7L6	Enterobacteria_phage	0.0e+00	68.4
WP_071698626.1\|3020533_3020875_-	hypothetical protein	NA	NA	NA	NA
WP_045342758.1\|3020961_3021246_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	2.7e-41	95.6
WP_001549114.1\|3021254_3021638_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
WP_032624422.1\|3021646_3022090_-	hypothetical protein	K7PHL2	Enterobacterial_phage	1.6e-72	94.5
WP_045359093.1\|3022149_3022497_-	DUF3168 domain-containing protein	Q9MCS8	Enterobacteria_phage	9.4e-57	95.7
WP_022648887.1\|3022493_3022943_-	HK97 gp10 family phage protein	K7P6X4	Enterobacteria_phage	2.9e-74	98.7
WP_032648717.1\|3022939_3023290_-\|head	phage head closure protein	S4TND9	Salmonella_phage	8.9e-55	92.2
WP_032648721.1\|3023298_3023625_-\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	3.4e-48	90.7
WP_032648723.1\|3023621_3024536_-\|portal	phage portal protein	S4TNN1	Salmonella_phage	4.3e-109	76.9
WP_032668515.1\|3024532_3025888_-\|portal	phage portal protein	S4TTG7	Salmonella_phage	1.7e-258	98.4
WP_151608544.1\|3026091_3028026_-\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	90.7
WP_087654008.1\|3028084_3029746_-\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	0.0e+00	98.4
WP_000954404.1\|3029742_3030237_-\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	1.7e-83	100.0
WP_032648734.1\|3030342_3030711_-	HNH endonuclease	S4TTG9	Salmonella_phage	3.7e-59	91.8
WP_032648736.1\|3030703_3031297_-	hypothetical protein	S4TR53	Salmonella_phage	1.8e-100	85.8
WP_032648738.1\|3031461_3031683_+	hypothetical protein	Q38575	Escherichia_phage	3.7e-22	71.2
WP_032668519.1\|3031794_3033252_-	glycosyl transferase	K7PKP3	Enterobacterial_phage	6.9e-218	73.6
WP_032667396.1\|3033268_3033496_-	hypothetical protein	NA	NA	NA	NA
WP_087654025.1\|3033508_3034333_-	hypothetical protein	K7PH02	Enterobacteria_phage	2.9e-19	77.4
WP_032668522.1\|3034533_3034749_-	hypothetical protein	NA	NA	NA	NA
WP_032668524.1\|3035641_3036187_-	hypothetical protein	K7PHH7	Enterobacteria_phage	7.1e-51	69.4
WP_087654026.1\|3036186_3036636_-	lysozyme	A0A0M4R365	Salmonella_phage	1.7e-58	79.7
WP_032668529.1\|3036632_3036917_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.2e-17	51.1
WP_020454456.1\|3036903_3037284_-\|holin	holin	F1C592	Cronobacter_phage	1.9e-50	80.2
WP_045347645.1\|3037395_3037590_-	hypothetical protein	NA	NA	NA	NA
WP_015570940.1\|3037695_3038181_-	HNH endonuclease	C4ML56	Xanthomonas_virus	1.5e-23	42.7
WP_023306760.1\|3038475_3039258_-	antitermination protein	F1C595	Cronobacter_phage	9.4e-113	79.1
WP_032648754.1\|3039254_3039566_-	hypothetical protein	NA	NA	NA	NA
WP_000186531.1\|3039567_3041439_-	AAA family ATPase	K7PK08	Enterobacteria_phage	4.5e-230	61.3
WP_050594988.1\|3041542_3042565_-	hypothetical protein	V5URT9	Shigella_phage	3.1e-47	55.2
WP_023063376.1\|3042557_3042767_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_024262726.1\|3042768_3042984_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	2.4e-10	50.0
WP_023296237.1\|3043137_3043830_+	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	4.3e-85	65.4
WP_032610623.1\|3044001_3044295_+	hypothetical protein	NA	NA	NA	NA
WP_032666061.1\|3044855_3045089_+	hypothetical protein	NA	NA	NA	NA
WP_032668534.1\|3045081_3045489_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.1e-43	78.6
WP_072159686.1\|3045460_3045682_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.1e-18	66.7
WP_032648760.1\|3045678_3046092_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	1.6e-47	67.2
WP_032648761.1\|3046092_3046317_+	hypothetical protein	A0A1B5FPG2	Escherichia_phage	3.7e-14	58.3
WP_023294930.1\|3046467_3046704_+	excisionase family protein	Q8W657	Enterobacteria_phage	4.8e-36	85.9
WP_032648762.1\|3046759_3048073_+\|integrase	site-specific integrase	Q8W658	Enterobacteria_phage	6.0e-221	85.3
WP_045324953.1\|3048051_3048825_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	2.3e-58	81.1
WP_003859737.1\|3048876_3049272_+	membrane protein	NA	NA	NA	NA
WP_003859735.1\|3049312_3050056_+	carboxy-S-adenosyl-L-methionine synthase CmoA	A0A1S6L2V9	Erwinia_phage	6.1e-29	30.2
WP_032648765.1\|3050052_3051024_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
3050292:3050308	attR	NA	NA	NA	NA
WP_099975470.1\|3050978_3051218_-	hypothetical protein	NA	NA	NA	NA
WP_017384404.1\|3051198_3051942_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_032648766.1\|3052020_3052581_-	VOC family protein	NA	NA	NA	NA
WP_059452731.1\|3052819_3054553_+\|tRNA	arginine--tRNA ligase	A0A1V0SIS8	Klosneuvirus	2.0e-86	34.6
WP_032650070.1\|3054587_3055727_-	glycoside hydrolase family 105 protein	NA	NA	NA	NA
WP_023303900.1\|3055731_3057315_-	MFS transporter	NA	NA	NA	NA
WP_023303901.1\|3057575_3057968_-	flagellar protein FlhE	NA	NA	NA	NA
WP_003859723.1\|3057967_3060046_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_006811100.1\|3060038_3061187_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_032648768.1\|3061337_3061982_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_000763862.1\|3061992_3062382_-	chemotaxis protein CheY	Q56AR1	Bacillus_thuringiensis_phage	1.3e-06	31.3
WP_003859716.1\|3062399_3063449_-	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	2.3e-05	32.0
WP_017384409.1\|3063445_3064312_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_032648770.1\|3064331_3065933_-	methyl-accepting chemotaxis protein IV	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-07	73.9
WP_032648771.1\|3065977_3067645_-	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	5.8e-11	34.7
WP_032648773.1\|3067730_3068693_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_032648775.1\|3068689_3071074_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_015570266.1\|3071049_3071811_-	molecular chaperone	NA	NA	NA	NA
WP_032103963.1\|3071827_3072376_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_6

3123426 : 3168558

Cronobacter_phage(32.0%)

head,terminase,holin,integrase

attL 3152918:3152933|attR 3171046:3171061

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151608552.1\|3123426_3125643_-	hypothetical protein	F1C5A8	Cronobacter_phage	1.0e-39	62.1
WP_151608554.1\|3125700_3128178_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	0.0e+00	92.6
WP_048245973.1\|3128164_3128530_-	NlpC/P60 family protein	F1C5F2	Cronobacter_phage	3.3e-60	85.7
WP_032668726.1\|3128553_3129018_-	HNH endonuclease	S4TVL1	Salmonella_phage	5.5e-28	42.4
WP_059512182.1\|3129094_3129565_-	hypothetical protein	F1C5F1	Cronobacter_phage	2.4e-79	92.9
WP_151608481.1\|3129564_3130062_-	hypothetical protein	F1C5F0	Cronobacter_phage	2.5e-87	90.3
WP_032647561.1\|3130100_3130337_-	hypothetical protein	NA	NA	NA	NA
WP_151608479.1\|3130336_3133819_-	tape measure protein	R9TMK1	Aeromonas_phage	4.8e-257	62.8
WP_045307639.1\|3133877_3134561_-	hypothetical protein	F1C5E8	Cronobacter_phage	4.6e-79	61.5
WP_151608477.1\|3134620_3135364_-	DNA breaking-rejoining protein	F1C5E5	Cronobacter_phage	1.3e-71	85.4
WP_048984796.1\|3135427_3135811_-	hypothetical protein	F1C5E4	Cronobacter_phage	8.9e-40	63.8
WP_059452793.1\|3135807_3136215_-	hypothetical protein	A0A291AXD9	Shigella_phage	2.3e-30	51.1
WP_151608475.1\|3136217_3136574_-	hypothetical protein	G0ZNE2	Cronobacter_phage	3.0e-26	55.6
WP_059452717.1\|3136573_3136747_-	hypothetical protein	I6R0P9	Salmonella_phage	1.2e-12	53.6
WP_048245854.1\|3136746_3137127_-	hypothetical protein	F1C5E2	Cronobacter_phage	2.0e-28	53.7
WP_048245855.1\|3137129_3137495_-	hypothetical protein	NA	NA	NA	NA
WP_048245857.1\|3137504_3138602_-	hypothetical protein	F1C5E1	Cronobacter_phage	2.6e-161	77.7
WP_032648633.1\|3138611_3139046_-	hypothetical protein	F1C5E0	Cronobacter_phage	5.1e-52	74.3
WP_151608473.1\|3139049_3140438_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	9.7e-153	59.0
WP_044704353.1\|3140530_3140725_-	hypothetical protein	NA	NA	NA	NA
WP_074135794.1\|3140756_3141743_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.2e-111	66.7
WP_057059039.1\|3141690_3143142_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	2.7e-198	74.8
WP_057059038.1\|3143153_3144701_-\|terminase	terminase	G8C7P3	Escherichia_phage	1.6e-289	88.8
WP_046401556.1\|3144697_3145348_-	hypothetical protein	G8C7P2	Escherichia_phage	1.7e-104	91.2
WP_057059037.1\|3145351_3145570_-	hypothetical protein	NA	NA	NA	NA
WP_057059036.1\|3145876_3146395_-	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	4.6e-92	98.2
WP_059452755.1\|3146719_3146914_-	hypothetical protein	K7PM01	Enterobacterial_phage	1.4e-17	90.9
WP_058655468.1\|3146864_3147143_-	hypothetical protein	NA	NA	NA	NA
WP_023296427.1\|3147139_3147682_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	1.6e-74	70.4
WP_001514184.1\|3147684_3147960_-\|holin	phage holin family protein	S4TNV9	Salmonella_phage	5.8e-09	41.0
WP_001514183.1\|3147956_3148358_-	hypothetical protein	NA	NA	NA	NA
WP_059452756.1\|3148637_3149327_-	antiterminator	I6PDF8	Cronobacter_phage	2.9e-57	51.1
WP_015705894.1\|3149323_3149440_-	hypothetical protein	NA	NA	NA	NA
WP_058647991.1\|3149436_3150081_-	hypothetical protein	S4TSR3	Salmonella_phage	2.1e-73	69.6
WP_059452757.1\|3150074_3150575_-	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	2.3e-35	50.7
WP_063135696.1\|3150538_3150709_-	hypothetical protein	G8C7V4	Escherichia_phage	7.7e-20	90.6
WP_023330218.1\|3150708_3151146_-	recombination protein NinB	G8C7V3	Escherichia_phage	7.4e-59	77.1
WP_024191555.1\|3151381_3151579_-	hypothetical protein	NA	NA	NA	NA
WP_063135697.1\|3151578_3151848_-	hypothetical protein	NA	NA	NA	NA
3152918:3152933	attL	NA	NA	NA	NA
WP_032647527.1\|3153130_3153649_-	HNH endonuclease	K9K8J2	Salmonella_phage	2.4e-32	49.1
WP_072258162.1\|3153626_3153944_-	protein ren	O48423	Enterobacteria_phage	2.7e-18	52.6
WP_151608556.1\|3153933_3155307_-	AAA family ATPase	E5AGF0	Erwinia_phage	4.9e-165	62.4
WP_045325428.1\|3156706_3157273_-	hypothetical protein	NA	NA	NA	NA
WP_025760151.1\|3157303_3157525_-	helix-turn-helix domain-containing protein	M9NZA8	Enterobacteria_phage	1.8e-32	98.6
WP_047345172.1\|3157642_3158362_+	helix-turn-helix transcriptional regulator	K7P7I4	Enterobacteria_phage	6.6e-129	95.0
WP_032655965.1\|3158523_3159471_+	hypothetical protein	A9YX09	Burkholderia_phage	2.0e-61	42.3
WP_023313997.1\|3159606_3159804_-	hypothetical protein	G8C7T7	Escherichia_phage	9.2e-25	93.8
WP_063133514.1\|3160737_3160947_+	hypothetical protein	NA	NA	NA	NA
WP_006809788.1\|3161103_3161313_+	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	6.7e-34	95.7
WP_047058761.1\|3161359_3161869_+	hypothetical protein	A0A1W6DY33	Salmonella_phage	1.8e-35	44.1
WP_047058763.1\|3161865_3162144_+	host nuclease inhibitor GamL	M9NZI3	Enterobacteria_phage	3.6e-43	92.5
WP_047058765.1\|3162153_3163071_+	recombinase RecT	M9NZA6	Enterobacteria_phage	3.9e-158	90.2
WP_047058767.1\|3163067_3163748_+	YqaJ viral recombinase family protein	M9NZE1	Enterobacteria_phage	2.2e-126	94.7
WP_047058769.1\|3163744_3164173_+	hypothetical protein	M9NYX4	Enterobacteria_phage	1.5e-72	95.8
WP_048245863.1\|3164333_3164885_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	3.7e-55	59.5
WP_045307574.1\|3164881_3165100_+	hypothetical protein	NA	NA	NA	NA
WP_045307575.1\|3165096_3165663_+	hypothetical protein	NA	NA	NA	NA
WP_045307576.1\|3165659_3165851_+	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	3.2e-14	66.1
WP_045307577.1\|3165942_3166158_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	1.9e-15	57.1
WP_023332830.1\|3166157_3166397_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	9.8e-13	51.3
WP_045307579.1\|3166762_3166963_+	hypothetical protein	G8C7S1	Escherichia_phage	1.0e-31	97.0
WP_045307580.1\|3166971_3167217_+	excisionase	S4TND0	Salmonella_phage	1.0e-25	60.0
WP_045307581.1\|3167262_3168558_+\|integrase	site-specific integrase	Q20GI2	Phage_258-320	5.6e-179	68.4
3171046:3171061	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3261523 : 3268946

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032103480.1\|3261523_3262528_+	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	2.5e-33	29.0
WP_003859477.1\|3262576_3263743_-	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	4.1e-112	54.0
WP_017693097.1\|3263995_3265402_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	6.8e-37	28.3
WP_023295000.1\|3265537_3266086_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	9.1e-54	54.4
WP_032103483.1\|3266999_3267866_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.2e-110	66.3
WP_032103484.1\|3267881_3268946_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.4e-104	54.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP042552

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

71652 : 123797

Escherichia_phage(25.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001585166.1\|71652_72732_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	2.8e-38	34.1
WP_001040058.1\|72733_73507_-	hypothetical protein	NA	NA	NA	NA
WP_001280115.1\|73499_74642_-	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	6.5e-30	34.5
WP_012695441.1\|74651_75710_-	hypothetical protein	NA	NA	NA	NA
WP_000254137.1\|76030_76612_+	tellurium resistance-associated protein TerZ	K4JRX3	Caulobacter_phage	6.3e-13	30.0
WP_001054786.1\|76611_77769_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_000007449.1\|77791_78247_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_000255079.1\|78269_79310_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000116680.1\|79358_79937_+	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	2.5e-06	40.0
WP_000301247.1\|80005_80581_+	tellurium resistance protein TerE	K4JRX3	Caulobacter_phage	8.7e-31	41.6
WP_001053340.1\|81009_82251_+	tellurium resistance protein TerF	NA	NA	NA	NA
WP_000374058.1\|82341_82797_+	hypothetical protein	NA	NA	NA	NA
WP_000398479.1\|83037_83229_-	hypothetical protein	NA	NA	NA	NA
WP_001151572.1\|83320_83662_-	hypothetical protein	NA	NA	NA	NA
WP_000880375.1\|84648_84903_+	hypothetical protein	NA	NA	NA	NA
WP_000166877.1\|84905_86945_-	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	1.7e-25	25.3
WP_000211823.1\|86941_87928_-	hypothetical protein	NA	NA	NA	NA
WP_000341066.1\|88848_89241_+	hypothetical protein	NA	NA	NA	NA
WP_012695443.1\|89219_89531_+	hypothetical protein	NA	NA	NA	NA
WP_000462754.1\|89899_90556_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_123906519.1\|90595_90778_+	hypothetical protein	NA	NA	NA	NA
WP_000340139.1\|90758_91256_+	membrane protein	NA	NA	NA	NA
WP_012695445.1\|91260_92649_+	hypothetical protein	NA	NA	NA	NA
WP_012477377.1\|93049_93343_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000088044.1\|93347_94673_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_000134171.1\|94733_94940_+	hypothetical protein	NA	NA	NA	NA
WP_000985909.1\|95040_95451_+	hypothetical protein	NA	NA	NA	NA
WP_001805097.1\|95463_95988_+	hypothetical protein	NA	NA	NA	NA
WP_000427623.1\|96169_97174_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_000405672.1\|97264_97699_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001287661.1\|97784_100190_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.0e-141	46.1
WP_000118563.1\|100186_101263_+	signal peptidase II	NA	NA	NA	NA
WP_000993245.1\|101271_101484_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001446012.1\|101446_101566_+	hypothetical protein	NA	NA	NA	NA
WP_001087807.1\|101549_101786_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277466.1\|101782_102148_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000209296.1\|102165_103851_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_000522996.1\|103889_104315_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|104342_104618_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294656.1\|104633_104999_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|105070_105526_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000278471.1\|106203_106629_+	hypothetical protein	NA	NA	NA	NA
WP_001224686.1\|107177_107486_+	hypothetical protein	NA	NA	NA	NA
WP_000784387.1\|107501_108359_+	HNH endonuclease	G0X580	Salmonella_phage	3.9e-11	34.2
WP_001194554.1\|108420_108624_+	hypothetical protein	NA	NA	NA	NA
WP_001287391.1\|108965_109370_-	H-NS histone family protein	NA	NA	NA	NA
WP_001100635.1\|109547_109841_-	hypothetical protein	NA	NA	NA	NA
WP_000175475.1\|109866_110103_-	hypothetical protein	NA	NA	NA	NA
WP_000490638.1\|110657_111323_-	hypothetical protein	NA	NA	NA	NA
WP_001371925.1\|111380_111761_-	hypothetical protein	NA	NA	NA	NA
WP_000027057.1\|112090_112951_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|113133_113691_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_001143760.1\|113854_116860_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0
WP_001067855.1\|120873_121578_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001239317.1\|121657_122158_+	hypothetical protein	NA	NA	NA	NA
WP_001011939.1\|122307_122949_+	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
WP_001067855.1\|123092_123797_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

127438 : 159539

uncultured_Caudovirales_phage(46.15%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|127438_128143_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001572372.1\|128308_128785_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_001572373.1\|128861_130481_-	phosphoethanolamine--lipid A transferase MCR-9.1	NA	NA	NA	NA
WP_001572374.1\|130669_131593_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.4e-176	99.3
WP_004248839.1\|131676_133023_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	8.8e-18	26.6
WP_000723070.1\|133240_133675_+	hypothetical protein	NA	NA	NA	NA
WP_001572377.1\|133932_135048_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000019951.1\|135170_135443_+	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000193207.1\|135908_136727_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_001371952.1\|136723_137929_+	hypothetical protein	NA	NA	NA	NA
WP_000121164.1\|137992_138196_-	hypothetical protein	NA	NA	NA	NA
WP_000078513.1\|138208_139528_-	DUF1173 family protein	NA	NA	NA	NA
WP_000833380.1\|139778_141206_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.4e-100	52.3
WP_000464825.1\|141420_141936_+	thermonuclease family protein	A0A1X6WF84	Pacmanvirus	2.1e-07	38.6
WP_000975181.1\|141938_142835_+	hypothetical protein	NA	NA	NA	NA
WP_001005009.1\|142882_143197_+	hypothetical protein	NA	NA	NA	NA
WP_000637193.1\|143270_143528_+	hypothetical protein	NA	NA	NA	NA
WP_001371948.1\|143586_143820_+	hypothetical protein	NA	NA	NA	NA
WP_001046767.1\|143865_144120_+	hypothetical protein	NA	NA	NA	NA
WP_000443289.1\|144157_144445_+	hypothetical protein	NA	NA	NA	NA
WP_001371914.1\|144514_144712_+	hypothetical protein	NA	NA	NA	NA
WP_000864986.1\|144852_145128_+	hypothetical protein	NA	NA	NA	NA
WP_000927306.1\|145619_147098_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	7.3e-199	74.4
WP_001066652.1\|147116_147944_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-43	37.2
WP_000065802.1\|148003_148429_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-50	70.7
WP_000922628.1\|148441_149731_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	9.9e-168	71.4
WP_000941305.1\|149776_150097_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-20	53.7
WP_000130816.1\|150183_150888_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	8.8e-86	72.9
WP_000125668.1\|150920_152324_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_012695466.1\|152543_153467_-\|transposase	IS5-like element IS903B family transposase	Q1MVF0	Enterobacteria_phage	4.6e-175	98.7
WP_001567369.1\|153586_154219_+	hypothetical protein	NA	NA	NA	NA
WP_001567368.1\|154247_155651_-\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_000785965.1\|155864_156182_+	hypothetical protein	NA	NA	NA	NA
WP_001100610.1\|156204_156510_+	hypothetical protein	NA	NA	NA	NA
WP_000285959.1\|156554_157226_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_001371904.1\|157683_158091_+	hypothetical protein	NA	NA	NA	NA
WP_000900745.1\|158141_158459_-	hypothetical protein	NA	NA	NA	NA
WP_122966916.1\|158427_158643_-	hypothetical protein	NA	NA	NA	NA
WP_100185530.1\|158624_159539_-\|transposase	IS5 family transposase	A0A077SK28	Escherichia_phage	3.6e-172	98.4

DBSCAN-SWA_3

202694 : 229533

Escherichia_phage(33.33%)

integrase,transposase,protease

attL 211599:211613|attR 224625:224639

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000219087.1\|202694_203933_-\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	2.5e-11	23.1
WP_000589001.1\|204354_205695_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_085949440.1\|205869_207239_-\|transposase	IS3-like element ISKpn8 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	9.4e-108	95.5
WP_000137794.1\|207571_208177_-	hypothetical protein	NA	NA	NA	NA
WP_000703842.1\|208393_208675_-	hypothetical protein	NA	NA	NA	NA
WP_000633161.1\|209050_209362_-	hypothetical protein	NA	NA	NA	NA
WP_000814953.1\|209584_209785_-	hypothetical protein	NA	NA	NA	NA
WP_000551490.1\|209824_210049_-	hypothetical protein	NA	NA	NA	NA
WP_000781547.1\|210103_210307_-	hypothetical protein	NA	NA	NA	NA
WP_024143014.1\|210486_210780_-	hypothetical protein	I7B2L9	Escherichia_phage	4.1e-05	38.6
WP_001371932.1\|210859_211351_-	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_001165367.1\|211355_211667_-	DUF957 domain-containing protein	NA	NA	NA	NA
211599:211613	attL	NA	NA	NA	NA
WP_000071366.1\|212183_212504_-	hypothetical protein	NA	NA	NA	NA
WP_001371935.1\|212682_212913_-	hypothetical protein	NA	NA	NA	NA
WP_000252081.1\|213084_213978_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|214287_214992_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000057569.1\|215331_215673_+	hypothetical protein	NA	NA	NA	NA
WP_004248792.1\|215687_216479_-\|protease	zinc metalloprotease	NA	NA	NA	NA
WP_000480968.1\|216659_217496_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|217495_218299_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000845039.1\|218456_219470_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_072058701.1\|219438_219690_+\|transposase	transposase	NA	NA	NA	NA
WP_000019304.1\|220072_220642_-	trimethoprim-resistant dihydrofolate reductase DfrA19	A0A1V0SD48	Indivirus	3.5e-08	27.2
WP_002008781.1\|220641_221142_-	hypothetical protein	A0A1V0SB21	Catovirus	3.3e-10	31.7
WP_000050481.1\|221407_222949_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000259031.1\|223353_224193_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_052238321.1\|224186_224522_-	ethidium bromide resistance protein	NA	NA	NA	NA
WP_025999322.1\|224414_224780_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
224625:224639	attR	NA	NA	NA	NA
WP_004193231.1\|224783_225659_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012579084.1\|225844_226501_-	quinolone resistance pentapeptide repeat protein QnrA1	NA	NA	NA	NA
WP_000050481.1\|226764_228306_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001389365.1\|228768_229533_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7

DBSCAN-SWA_4

234492 : 252646

Escherichia_phage(72.73%)

integrase,transposase

attL 227826:227840|attR 248877:248891

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
227826:227840	attL	NA	NA	NA	NA
WP_012695485.1\|234492_235302_-	AAC(3)-II family aminoglycoside N-acetyltransferase	O64018	Bacillus_phage	1.2e-17	29.3
WP_006473457.1\|235543_236899_-\|transposase	IS1380-like element IS1247 family transposase	A0A1X9I6F6	Streptococcus_phage	2.2e-45	29.7
WP_012695484.1\|237386_237968_-	aminoglycoside N-acetyltransferase AAC(6')-IIc	NA	NA	NA	NA
WP_002075255.1\|238130_239144_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_001550559.1\|239411_239903_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|239936_240641_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071538079.1\|240631_240814_+	hypothetical protein	NA	NA	NA	NA
WP_002904004.1\|240777_241638_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|241658_242420_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_023148136.1\|242410_242644_+	hypothetical protein	NA	NA	NA	NA
WP_002903955.1\|242681_243584_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_001067855.1\|245217_245922_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001239317.1\|246001_246502_+	hypothetical protein	NA	NA	NA	NA
WP_001011939.1\|246651_247293_+	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
WP_001067855.1\|247436_248141_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000159617.1\|248656_248851_-	hypothetical protein	NA	NA	NA	NA
WP_000172888.1\|248847_249159_-	hypothetical protein	NA	NA	NA	NA
248877:248891	attR	NA	NA	NA	NA
WP_001180999.1\|249221_249461_-	hypothetical protein	NA	NA	NA	NA
WP_000140246.1\|251276_251606_-	hypothetical protein	NA	NA	NA	NA
WP_022646498.1\|251722_252646_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	3.8e-177	99.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP042553

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5791 : 58098

Escherichia_phage(43.75%)

integrase,transposase

attL 23500:23559|attR 39015:39215

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012817690.1\|5791_8800_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.5
WP_071787999.1\|8905_9184_-	hypothetical protein	NA	NA	NA	NA
WP_000493286.1\|9404_9734_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
WP_000780222.1\|9714_9996_+	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_016947617.1\|10273_11254_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	98.8
WP_022652299.1\|11576_12185_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_022652298.1\|12561_14373_+	beta-glucuronidase	B9U1V4	Vaccinia_virus	1.1e-302	79.8
WP_022652297.1\|14369_15743_+	glucuronide transporter	NA	NA	NA	NA
WP_022652296.1\|15791_17057_+	glucuronide uptake porin UidC	NA	NA	NA	NA
WP_022652295.1\|17358_18543_+	mannonate dehydratase	NA	NA	NA	NA
WP_022652294.1\|18649_20119_+	fructuronate reductase	H8ZJP8	Ostreococcus_tauri_virus	6.9e-48	29.8
WP_022652293.1\|20138_21569_+	glucuronate isomerase	NA	NA	NA	NA
WP_032430963.1\|21786_22575_+	Uxu operon transcriptional regulator	NA	NA	NA	NA
WP_001067834.1\|22722_23427_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
WP_014344500.1\|23460_23733_-	hypothetical protein	NA	NA	NA	NA
23500:23559	attL	NA	NA	NA	NA
WP_000845039.1\|23701_24715_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_015060105.1\|24867_25608_+	subclass B1 metallo-beta-lactamase IMP-4	NA	NA	NA	NA
WP_015063357.1\|25839_26172_+	quaternary ammonium compound efflux SMR transporter QacG2	NA	NA	NA	NA
WP_003159191.1\|26298_26853_+	aminoglycoside N-acetyltransferase AAC(6')-Ib4	NA	NA	NA	NA
WP_000186237.1\|26947_27580_+	type B-3 chloramphenicol O-acetyltransferase CatB3	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
WP_000846390.1\|27648_28449_+	oxacillin-hydrolyzing class D beta-lactamase OXA-10	NA	NA	NA	NA
WP_001206316.1\|28465_29257_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_020956917.1\|29745_30645_+	class A extended-spectrum beta-lactamase VEB-3	NA	NA	NA	NA
WP_151532708.1\|31650_32136_-	hypothetical protein	NA	NA	NA	NA
WP_039272567.1\|35330_38363_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_039272634.1\|38359_38953_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.2e-40	49.7
WP_120783633.1\|38987_39248_-\|transposase	transposase	NA	NA	NA	NA
39015:39215	attR	NA	NA	NA	NA
WP_063840321.1\|40304_40859_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001334766.1\|40989_41820_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_000186237.1\|41957_42590_+	type B-3 chloramphenicol O-acetyltransferase CatB3	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
WP_001749986.1\|42674_43127_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_000679427.1\|43349_43697_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|43690_44530_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_001993321.1\|44459_44639_-	hypothetical protein	NA	NA	NA	NA
WP_000376616.1\|44657_44861_+	hypothetical protein	NA	NA	NA	NA
WP_000184001.1\|45016_46222_+	chromate efflux transporter	NA	NA	NA	NA
WP_000130000.1\|46232_46538_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024143553.1\|46553_46736_-	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|46764_47529_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001336397.1\|47719_48076_-	hypothetical protein	NA	NA	NA	NA
WP_001137892.1\|48021_48606_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000004159.1\|48605_49844_-	MFS transporter	NA	NA	NA	NA
WP_000219391.1\|49840_50746_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_001067855.1\|50867_51572_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000557454.1\|51804_52665_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_001067855.1\|53033_53738_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000215515.1\|56634_56991_-	cupin domain-containing protein	NA	NA	NA	NA
WP_001067848.1\|57393_58098_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6

DBSCAN-SWA_2

69400 : 123522

Escherichia_phage(21.74%)

integrase,transposase

attL 102809:102824|attR 125307:125322

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001395480.1\|69400_70432_+\|transposase	IS630-like element ISEc33 family transposase	NA	NA	NA	NA
WP_001118618.1\|71253_72177_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	4.9e-177	99.7
WP_022652268.1\|74918_75902_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	1.3e-47	39.4
WP_001166628.1\|75995_76451_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294653.1\|76522_76918_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000732275.1\|76933_77209_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000522996.1\|77236_77662_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000209296.1\|77700_79386_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_001277466.1\|79403_79769_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_022652270.1\|79765_80002_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001446012.1\|79985_80105_-	hypothetical protein	NA	NA	NA	NA
WP_000993245.1\|80067_80280_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|80479_81184_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001752509.1\|81510_82011_+	non-heme ferritin-like protein	NA	NA	NA	NA
WP_087893729.1\|82084_83357_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-146	81.7
WP_016947617.1\|83663_84644_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	98.8
WP_000780222.1\|84921_85203_-	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_000493286.1\|85183_85513_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
WP_022652300.1\|85931_86885_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_022652302.1\|87505_88216_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-31	37.7
WP_022652303.1\|88217_89423_-	ABC transporter permease	NA	NA	NA	NA
WP_022652304.1\|89419_90571_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004393990.1\|90567_91176_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_022652300.1\|91363_92317_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_032645789.1\|92571_92757_+	hypothetical protein	NA	NA	NA	NA
WP_050483874.1\|92907_93417_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_021314637.1\|94588_94819_+	thioredoxin family protein	NA	NA	NA	NA
WP_022652307.1\|95096_95300_-	hypothetical protein	NA	NA	NA	NA
WP_032430841.1\|95381_96209_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-51	40.3
WP_022652309.1\|96226_97705_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.9e-194	73.2
WP_032430957.1\|98211_99234_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_059331197.1\|99991_100135_+	hypothetical protein	NA	NA	NA	NA
WP_022652310.1\|100309_101050_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_022652311.1\|101375_102365_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	5.0e-103	61.2
102809:102824	attL	NA	NA	NA	NA
WP_022652312.1\|103220_103490_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_022652313.1\|103493_104024_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_077873527.1\|104155_105049_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	4.3e-154	86.8
WP_022652315.1\|106150_107302_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	9.8e-42	35.3
WP_001201739.1\|107410_107794_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.1e-13	36.3
WP_000609174.1\|107790_108138_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-59	95.7
WP_001000409.1\|108187_109723_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.0e-260	87.7
WP_032430835.1\|109779_111138_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.3e-117	47.5
WP_022652317.1\|111963_113130_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.1e-218	94.3
WP_022652318.1\|113129_114095_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	8.8e-137	77.5
WP_022652236.1\|116123_118262_+	hypothetical protein	NA	NA	NA	NA
WP_022652237.1\|118565_119999_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
WP_022652238.1\|120032_121247_-	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	9.4e-35	42.9
WP_022652239.1\|121395_123522_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
125307:125322	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042551

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP042552

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP042553

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection