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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042551 Enterobacter hormaechei strain C45 chromosome, complete genome 4 crisprs csa3,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,PD-DExK 1 10 7 0
NZ_CP042554 Enterobacter hormaechei strain C45 plasmid pC45_003, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP042552 Enterobacter hormaechei strain C45 plasmid pC45_001, complete sequence 0 crisprs csa3 0 0 4 0
NZ_CP042553 Enterobacter hormaechei strain C45 plasmid pC45_002, complete sequence 0 crisprs NA 0 0 2 0
NZ_CP042555 Enterobacter hormaechei strain C45 plasmid pC45_004, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP042551
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042551_1 1729645-1730032 Unclear I-F
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042551_2 1747282-1748151 TypeI-F I-F
14 spacers
cas1,cas3f,cas8f,cas5f,cas7f,cas6f

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042551_3 1757629-1758319 TypeI-F I-F
11 spacers
cas6f,cas7f,cas5f,cas8f,cas3f,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042551_4 3155948-3156048 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP042551_3 3.7|1758019|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1758019-1758050 32 NZ_CP042551.1 351711-351742 1 0.969

1. spacer 3.7|1758019|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to position: 351711-351742, mismatch: 1, identity: 0.969

tagtcacccagcgtttgatgcattacggtgcg	CRISPR spacer
taatcacccagcgtttgatgcattacggtgcg	Protospacer
**.*****************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP042551_1 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT 1729973-1730004 32 MK972693 Salmonella phage SI23, complete genome 6397-6428 2 0.938
NZ_CP042551_1 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT 1729973-1730004 32 MK770415 Salmonella phage SF11, complete genome 15201-15232 2 0.938
NZ_CP042551_1 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT 1729973-1730004 32 MK972694 Salmonella phage SE22, complete genome 27485-27516 2 0.938
NZ_CP042551_1 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT 1729973-1730004 32 MK770414 Salmonella phage SE16, complete genome 19097-19128 2 0.938
NZ_CP042551_1 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT 1729973-1730004 32 NC_013059 Salmonella phage c341, complete genome 37505-37536 2 0.938
NZ_CP042551_1 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT 1729973-1730004 32 MK972686 Salmonella phage SF3, complete genome 38551-38582 2 0.938
NZ_CP042551_1 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT 1729973-1730004 32 MK972685 Salmonella phage SE10, complete genome 39770-39801 2 0.938
NZ_CP042551_1 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT 1729973-1730004 32 MK972687 Salmonella phage SE1 (in:P22virus), complete genome 30044-30075 2 0.938
NZ_CP042551_1 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT 1729973-1730004 32 FJ000341 Salmonella phage g341c, complete genome 37505-37536 2 0.938
NZ_CP042551_1 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT 1729973-1730004 32 EU570103 Salmonella phage epsilon34, complete genome 39546-39577 2 0.938
NZ_CP042551_1 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT 1729973-1730004 32 MK972692 Salmonella phage SE21, complete genome 26621-26652 2 0.938
NZ_CP042551_3 3.1|1757657|34|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1757657-1757690 34 NC_047875 Salmonella phage UPF_BP1, complete genome 9721-9754 3 0.912
NZ_CP042551_2 2.9|1747792|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1747792-1747823 32 MT251347 Klebsiella phage LASTA, complete genome 60146-60177 5 0.844
NZ_CP042551_2 2.9|1747792|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1747792-1747823 32 MT251348 Klebsiella phage SJM3, complete genome 60146-60177 5 0.844
NZ_CP042551_3 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1757899-1757930 32 NZ_CP035421 Leisingera sp. NJS204 plasmid unnamed4, complete sequence 25247-25278 5 0.844
NZ_CP042551_2 2.10|1747852|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1747852-1747883 32 MH389777 Dickeya phage vB_DsoM_JA11, complete genome 45842-45873 6 0.812
NZ_CP042551_2 2.10|1747852|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1747852-1747883 32 MH460462 Dickeya phage vB_DsoM_JA33, complete genome 45832-45863 6 0.812
NZ_CP042551_2 2.10|1747852|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1747852-1747883 32 MH460460 Dickeya phage vB_DsoM_JA13, complete genome 46037-46068 6 0.812
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 JF974302 Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces 21036-21067 7 0.781
NZ_CP042551_3 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1757899-1757930 32 NC_016624 Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence 440509-440540 7 0.781
NZ_CP042551_3 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1757899-1757930 32 NZ_CP009572 Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence 74501-74532 7 0.781
NZ_CP042551_1 1.4|1729853|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729853-1729884 32 NC_023006 Pseudomonas phage PPpW-3 DNA, complete sequence 36335-36366 8 0.75
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 NZ_CP043441 Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence 1534665-1534696 8 0.75
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 MG592513 Vibrio phage 1.142.O._10N.261.49.E11, partial genome 26630-26661 8 0.75
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 MG592412 Vibrio phage 1.028.O._10N.286.45.B6, partial genome 26630-26661 8 0.75
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 MG592527 Vibrio phage 1.159.O._10N.261.46.F12, partial genome 26630-26661 8 0.75
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 MG592588 Vibrio phage 1.217.O._10N.261.45.A1, partial genome 26630-26661 8 0.75
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 MG592589 Vibrio phage 1.219.O._10N.261.45.E2, partial genome 26630-26661 8 0.75
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 MG592524 Vibrio phage 1.156.O._10N.261.45.A6, partial genome 26630-26661 8 0.75
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 MG592669 Vibrio phage 2.159.A._10N.261.46.F12, partial genome 26630-26661 8 0.75
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 MG592670 Vibrio phage 2.159.B._10N.261.46.F12, partial genome 26630-26661 8 0.75
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 MG592507 Vibrio phage 1.136.O._10N.261.45.E11, partial genome 26630-26661 8 0.75
NZ_CP042551_2 2.7|1747671|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1747671-1747702 32 LR794146 Bacteriophage APSE-7 strain HaCipinimaritimae-2836 genome assembly, chromosome: 1 8386-8417 8 0.75
NZ_CP042551_2 2.7|1747671|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1747671-1747702 32 LR794149 Bacteriophage APSE-7 strain HaCicuneomaculata-2628 genome assembly, chromosome: 1 9304-9335 8 0.75
NZ_CP042551_2 2.7|1747671|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1747671-1747702 32 NZ_CP012644 Rufibacter tibetensis strain 1351 plasmid 1, complete sequence 160605-160636 8 0.75
NZ_CP042551_3 3.4|1757839|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1757839-1757870 32 MN694752 Marine virus AFVG_250M643, complete genome 8433-8464 8 0.75
NZ_CP042551_3 3.7|1758019|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1758019-1758050 32 NZ_AP022319 Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence 552157-552188 8 0.75
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 NC_015184 Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence 62533-62564 9 0.719
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 NC_013859 Azospirillum sp. B510 plasmid pAB510e, complete sequence 475099-475130 9 0.719
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 NZ_CP035511 Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence 283146-283177 9 0.719
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 NZ_CP054620 Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence 22327-22358 9 0.719
NZ_CP042551_2 2.9|1747792|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1747792-1747823 32 NZ_CP046573 Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence 961364-961395 9 0.719
NZ_CP042551_3 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1757899-1757930 32 NZ_CP032348 Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence 199651-199682 9 0.719
NZ_CP042551_3 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1757899-1757930 32 NZ_CP049252 Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed5, complete sequence 17144-17175 9 0.719
NZ_CP042551_1 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT 1729913-1729944 32 NZ_CP054621 Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence 714186-714217 11 0.656

1. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972693 (Salmonella phage SI23, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

2. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK770415 (Salmonella phage SF11, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

3. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972694 (Salmonella phage SE22, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

4. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK770414 (Salmonella phage SE16, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

5. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to NC_013059 (Salmonella phage c341, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

6. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972686 (Salmonella phage SF3, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

7. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972685 (Salmonella phage SE10, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

8. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972687 (Salmonella phage SE1 (in:P22virus), complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

9. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to FJ000341 (Salmonella phage g341c, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

10. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to EU570103 (Salmonella phage epsilon34, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

11. spacer 1.6|1729973|32|NZ_CP042551|CRISPRCasFinder,CRT matches to MK972692 (Salmonella phage SE21, complete genome) position: , mismatch: 2, identity: 0.938

tcttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
tcctgcctgatttgctcatgccattagtcacg	Protospacer
**.******************* *********

12. spacer 3.1|1757657|34|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NC_047875 (Salmonella phage UPF_BP1, complete genome) position: , mismatch: 3, identity: 0.912

ctgcatgactggatatccattccggttactgcac	CRISPR spacer
ctgcacgactggatatccattccggtgactgcat	Protospacer
*****.******************** ******.

13. spacer 2.9|1747792|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MT251347 (Klebsiella phage LASTA, complete genome) position: , mismatch: 5, identity: 0.844

ttgcggggtggcgggattccgagcacccgcat	CRISPR spacer
tgcgggggtggcggggttccgagtacccgcat	Protospacer
*   ***********.*******.********

14. spacer 2.9|1747792|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MT251348 (Klebsiella phage SJM3, complete genome) position: , mismatch: 5, identity: 0.844

ttgcggggtggcgggattccgagcacccgcat	CRISPR spacer
tgcgggggtggcggggttccgagtacccgcat	Protospacer
*   ***********.*******.********

15. spacer 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035421 (Leisingera sp. NJS204 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

cgtcggaac--ggcgcatcgctgctgcggcggct	CRISPR spacer
--ccggaacagggcgcagcgctgcggcggcggct	Protospacer
  .******  ****** ****** *********

16. spacer 2.10|1747852|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 6, identity: 0.812

catgc-cgcggagtaactaacgtgatatccctt	CRISPR spacer
-atgcaagcggagtacctaacgtgaaatccatc	Protospacer
 ****  ******** ********* **** *.

17. spacer 2.10|1747852|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 6, identity: 0.812

catgc-cgcggagtaactaacgtgatatccctt	CRISPR spacer
-atgcaagcggagtacctaacgtgaaatccatc	Protospacer
 ****  ******** ********* **** *.

18. spacer 2.10|1747852|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MH460460 (Dickeya phage vB_DsoM_JA13, complete genome) position: , mismatch: 6, identity: 0.812

catgc-cgcggagtaactaacgtgatatccctt	CRISPR spacer
-atgcaagcggagtacctaacgtgaaatccatc	Protospacer
 ****  ******** ********* **** *.

19. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to JF974302 (Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces) position: , mismatch: 7, identity: 0.781

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcattgt	Protospacer
 **********.** ********* *..** *

20. spacer 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 7, identity: 0.781

cgtcggaacggcgcatcgctgctgcggcggct	CRISPR spacer
gcccgcgacgccgcatcgctgctgcgccggct	Protospacer
  .** .*** *************** *****

21. spacer 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009572 (Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence) position: , mismatch: 7, identity: 0.781

-cgtcggaacggcgcatcgctgctgcggcggct	CRISPR spacer
tcgtt-gcacgccgcatcgttgctgcggcggtc	Protospacer
 ***. * *** *******.***********..

22. spacer 1.4|1729853|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NC_023006 (Pseudomonas phage PPpW-3 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

tctaactgccagacttcctggctttctccctc	CRISPR spacer
ttttgctgcccgacttcctggccttctcgccg	Protospacer
*.* .***** ***********.***** *. 

23. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccag----cgtgtttt	CRISPR spacer
aacggcgagaccgtcacgcgccaggtgccggg----	Protospacer
 ******* **** **********    ** *    

24. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592513 (Vibrio phage 1.142.O._10N.261.49.E11, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

25. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592412 (Vibrio phage 1.028.O._10N.286.45.B6, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

26. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592527 (Vibrio phage 1.159.O._10N.261.46.F12, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

27. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592588 (Vibrio phage 1.217.O._10N.261.45.A1, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

28. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592589 (Vibrio phage 1.219.O._10N.261.45.E2, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

29. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592524 (Vibrio phage 1.156.O._10N.261.45.A6, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

30. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592669 (Vibrio phage 2.159.A._10N.261.46.F12, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

31. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592670 (Vibrio phage 2.159.B._10N.261.46.F12, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

32. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MG592507 (Vibrio phage 1.136.O._10N.261.45.E11, partial genome) position: , mismatch: 8, identity: 0.75

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
aacggcgacactgaaacgcgccagagcatagt	Protospacer
 **********.** ********* *..*  *

33. spacer 2.7|1747671|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to LR794146 (Bacteriophage APSE-7 strain HaCipinimaritimae-2836 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

tcgtcagcatcatcaggcgcttctgagggctt	CRISPR spacer
atgccagcatcttcaagcgcttctgaggcttg	Protospacer
 .*.******* ***.************ .* 

34. spacer 2.7|1747671|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to LR794149 (Bacteriophage APSE-7 strain HaCicuneomaculata-2628 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

tcgtcagcatcatcaggcgcttctgagggctt	CRISPR spacer
atgccagcatcttcaagcgcttctgaggcttg	Protospacer
 .*.******* ***.************ .* 

35. spacer 2.7|1747671|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012644 (Rufibacter tibetensis strain 1351 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

tcgtcagcatcatcaggcgcttctgagggctt	CRISPR spacer
tccccagcatcaccaggcgcttctcagctgct	Protospacer
** .********.*********** **   .*

36. spacer 3.4|1757839|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to MN694752 (Marine virus AFVG_250M643, complete genome) position: , mismatch: 8, identity: 0.75

ttgca-aatcgaaaatgcgggactgttcaatat	CRISPR spacer
-tacatcatcgaaaatgcggtgctgttcaacga	Protospacer
 *.**  ************* .********.. 

37. spacer 3.7|1758019|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.75

tagtcacccagcgtttgatgcattacggtgcg	CRISPR spacer
ctttcccgaagcgtttaatgctttacggtgcg	Protospacer
.  ** *  *******.**** **********

38. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 9, identity: 0.719

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ggcggcgacaccgacactcgcccgcgatctca	Protospacer
 .*************** **** ***  .*. 

39. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.719

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
tccggcgacaccgacacccggcagcccaggat	Protospacer
* *************** ** **** ..   *

40. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 9, identity: 0.719

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ctcggcgatgccgacacgcgccagcagttcta	Protospacer
. ******..***************.  *.* 

41. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
tccggcgacatcgacacgcggcagcccaggat	Protospacer
* ********.********* **** ..   *

42. spacer 2.9|1747792|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 9, identity: 0.719

ttgcggggtggcgggattccgagcacccgcat	CRISPR spacer
ttcgcgggtgccgggattccgagcagccctgc	Protospacer
**   ***** ************** ** ...

43. spacer 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcggaacggcgcatcgctgctgcggcggct	CRISPR spacer
tggcggcacggcgcatcgctgcttcgcccagc	Protospacer
.* *** **************** ** * . .

44. spacer 3.5|1757899|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049252 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

cgtcggaa----cggcgcatcgctgctgcggcggct	CRISPR spacer
----gcgatttgcggcgcatcgctgctggcgcggcc	Protospacer
    * .*    ****************  *****.

45. spacer 1.5|1729913|32|NZ_CP042551|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 11, identity: 0.656

tacggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
gggggcgactccgacccgcgccagcgccgcag	Protospacer
 . ****** ***** **********.  .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 449377 : 506575 54 uncultured_Caudovirales_phage(21.74%) transposase,integrase attL 447555:447570|attR 509765:509780
DBSCAN-SWA_2 1281983 : 1327844 68 Cronobacter_phage(29.09%) terminase,head,holin,integrase attL 1281924:1281970|attR 1328025:1328071
DBSCAN-SWA_3 1987306 : 2048925 80 Enterobacterial_phage(29.09%) terminase,head,integrase,holin,capsid,portal,tail,tRNA attL 1977723:1977740|attR 2057879:2057896
DBSCAN-SWA_4 2585467 : 2628281 44 Enterobacteria_phage(25.0%) plate,transposase,tRNA,integrase attL 2601271:2601285|attR 2624168:2624182
DBSCAN-SWA_5 2882869 : 3072376 229 Enterobacteria_phage(19.11%) head,terminase,coat,protease,integrase,holin,portal,capsid,lysis,tail,tRNA attL 2907895:2907911|attR 3050292:3050308
DBSCAN-SWA_6 3123426 : 3168558 63 Cronobacter_phage(32.0%) head,terminase,holin,integrase attL 3152918:3152933|attR 3171046:3171061
DBSCAN-SWA_7 3261523 : 3268946 6 Enterobacteria_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP042552
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 71652 : 123797 57 Escherichia_phage(25.0%) transposase,protease NA
DBSCAN-SWA_2 127438 : 159539 39 uncultured_Caudovirales_phage(46.15%) transposase NA
DBSCAN-SWA_3 202694 : 229533 32 Escherichia_phage(33.33%) integrase,transposase,protease attL 211599:211613|attR 224625:224639
DBSCAN-SWA_4 234492 : 252646 20 Escherichia_phage(72.73%) integrase,transposase attL 227826:227840|attR 248877:248891
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP042553
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5791 : 58098 48 Escherichia_phage(43.75%) integrase,transposase attL 23500:23559|attR 39015:39215
DBSCAN-SWA_2 69400 : 123522 48 Escherichia_phage(21.74%) integrase,transposase attL 102809:102824|attR 125307:125322
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage