CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP032228	Erythrobacter flavus strain 21-3 chromosome, complete genome	0 crisprs	csa3,RT,DEDDh,PD-DExK,DinG,cas3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

163055 : 190568

Equine_infectious_anemia_virus(50.0%)

integrase,transposase

attL 154323:154341|attR 194164:194182

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
154323:154341	attL	NA	NA	NA	NA
WP_151884733.1\|163055_164248_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_006834202.1\|164333_164564_+	hypothetical protein	NA	NA	NA	NA
WP_087910440.1\|164739_166090_+\|transposase	IS3 family transposase	A0A097PUE8	Equine_infectious_anemia_virus	5.1e-05	27.3
WP_151884734.1\|166094_167090_-	patatin family protein	NA	NA	NA	NA
WP_151884735.1\|167079_167760_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_151884736.1\|167982_169440_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_083800434.1\|169406_170543_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_083800443.1\|170605_173668_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_083987516.1\|173699_174371_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_087910440.1\|174415_175766_+\|transposase	IS3 family transposase	A0A097PUE8	Equine_infectious_anemia_virus	5.1e-05	27.3
WP_151884737.1\|176175_177346_+\|transposase	IS3-like element ISEli1 family transposase	S5WIU1	Leptospira_phage	2.0e-50	42.8
WP_087910532.1\|177376_177541_-	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_054525419.1\|177700_177925_-	hypothetical protein	NA	NA	NA	NA
WP_066842344.1\|178174_178990_+	HNH endonuclease	NA	NA	NA	NA
WP_066842346.1\|179020_179404_-	DUF3768 domain-containing protein	L7TKV8	Rhizobium_phage	4.7e-09	32.8
WP_066842348.1\|179400_179589_-	hypothetical protein	NA	NA	NA	NA
WP_151884738.1\|180128_182735_-	AAA family ATPase	NA	NA	NA	NA
WP_151884739.1\|182753_185303_-	restriction endonuclease	NA	NA	NA	NA
WP_151884740.1\|185848_187200_-\|transposase	IS3 family transposase	A0A097PUE8	Equine_infectious_anemia_virus	5.0e-05	27.3
WP_151884741.1\|187252_189103_-	hypothetical protein	NA	NA	NA	NA
WP_066842321.1\|189365_190568_-\|integrase	tyrosine-type recombinase/integrase	B7SYF8	Stenotrophomonas_phage	7.5e-85	40.9
194164:194182	attR	NA	NA	NA	NA

DBSCAN-SWA_2

402776 : 454481

Staphylococcus_phage(12.5%)

tRNA,tail,protease,capsid,integrase,head,portal

attL 399087:399102|attR 440482:440497

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
399087:399102	attL	NA	NA	NA	NA
WP_029140603.1\|402776_403991_-\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	5.2e-17	25.7
WP_151884829.1\|404117_404819_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_151884830.1\|404838_405603_-	TSUP family transporter	NA	NA	NA	NA
WP_151884831.1\|405733_406951_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_050601718.1\|407023_407719_-	response regulator transcription factor	F4YXP8	Roseobacter_phage	3.0e-17	52.7
WP_151884832.1\|407862_409311_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_067504348.1\|409337_410123_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-22	30.1
WP_151884833.1\|410297_410672_+	hypothetical protein	NA	NA	NA	NA
WP_151884834.1\|410745_412092_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_151886424.1\|412127_413465_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_067506793.1\|413508_414039_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	3.2e-48	51.2
WP_151884835.1\|414149_415412_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_067506796.1\|415692_416760_+	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	8.0e-06	38.0
WP_151884836.1\|416756_417578_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_151884837.1\|417704_418493_+	DUF4167 domain-containing protein	NA	NA	NA	NA
WP_151884838.1\|418535_420131_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_151884839.1\|420160_421399_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.1e-94	48.2
WP_151884840.1\|421441_422581_-	CoA transferase	NA	NA	NA	NA
WP_151886425.1\|422618_423752_-	nitronate monooxygenase	NA	NA	NA	NA
WP_151886426.1\|430060_431308_-	kynureninase	NA	NA	NA	NA
WP_151884841.1\|431312_431963_-	arylformamidase	NA	NA	NA	NA
WP_151884842.1\|431959_432751_-	tryptophan 2,3-dioxygenase	NA	NA	NA	NA
WP_067506081.1\|432787_433204_-	DUF4112 domain-containing protein	NA	NA	NA	NA
WP_151884843.1\|433210_434671_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_067464833.1\|434713_435088_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_067464830.1\|435180_435636_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_067673779.1\|435912_436242_+	sel1 repeat family protein	NA	NA	NA	NA
WP_151884844.1\|436245_437394_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_151884845.1\|437390_438161_-	hypothetical protein	NA	NA	NA	NA
WP_151884846.1\|438135_438591_-	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	3.5e-19	38.4
WP_151884847.1\|438587_439229_-	HAD family hydrolase	NA	NA	NA	NA
WP_082837426.1\|439225_439459_-	DUF3572 family protein	NA	NA	NA	NA
WP_067499989.1\|439562_439931_+	response regulator	Q6XM27	Feldmannia_irregularis_virus	7.3e-07	31.1
WP_082837425.1\|439927_440521_-	hypothetical protein	NA	NA	NA	NA
440482:440497	attR	NA	NA	NA	NA
WP_067464870.1\|440682_440925_+	acyl carrier protein	NA	NA	NA	NA
WP_151884848.1\|440924_442175_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	V5LQ39	Emiliania_huxleyi_virus	2.5e-35	29.2
WP_151884849.1\|442196_443051_-	fatty acid hydroxylase	NA	NA	NA	NA
WP_151884850.1\|443107_443794_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_151884851.1\|443812_444475_-	DedA family protein	NA	NA	NA	NA
WP_151884852.1\|444697_445207_+	hypothetical protein	NA	NA	NA	NA
WP_151884853.1\|445196_446528_+	ATP-binding protein	A0A1V0DY66	Dinoroseobacter_phage	1.1e-76	43.2
WP_151884854.1\|446652_447810_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	3.0e-46	35.4
WP_151884855.1\|447806_448115_+	hypothetical protein	K4I011	Acidithiobacillus_phage	4.1e-11	52.8
WP_151884856.1\|448036_448507_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.7e-13	36.4
WP_151884857.1\|448585_449722_+\|capsid	phage major capsid protein	Q8W627	Enterobacteria_phage	3.1e-80	46.0
WP_151884858.1\|449803_450094_+	hypothetical protein	NA	NA	NA	NA
WP_151884859.1\|450245_450635_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_151884860.1\|450663_451071_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_130585601.1\|451067_451397_+	gene transfer agent family protein	NA	NA	NA	NA
WP_151884861.1\|451393_451588_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_130585603.1\|451580_452153_+\|tail	tail tape measure protein	D6PEW0	uncultured_phage	2.7e-08	31.3
WP_151884862.1\|452168_454481_+	TIGR02217 family protein	H6W7V5	Escherichia_phage	7.2e-52	27.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage