CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP043030	Pseudobutyrivibrio xylanivorans strain MA3014 chromosome PxyII, complete sequence	0 crisprs	Cas9_archaeal	0	0
NZ_CP043029	Pseudobutyrivibrio xylanivorans strain MA3014 plasmid pNP95, complete sequence	0 crisprs	NA	0	0
NZ_CP043028	Pseudobutyrivibrio xylanivorans strain MA3014 chromosome 1, complete sequence	3 crisprs	WYL,csa3,PD-DExK,cas2,cas1,cas12a,cas3HD,RT,cas3,DEDDh,DinG	1	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043028_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043028_1

1245920-1246457

TypeV-A

V-A

Consensus_repeat	Method
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	PILER-CR
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	CRISPRCasFinder
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	CRT
TGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCT	PILER-CR

8 spacers

cas2,cas1,cas12a

The CRISPR arrays of NZ_CP043028_1

>merge|NZ_CP043028|1|1245920-1246457|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
ATCTACAATATTAGAAATTATTTAAAGGTTCTAAGCAAAGGCTGTGCCCTTGGAACCTGCACAAATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCCGCGCAAAAATCCACCGATATCGTCAATATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCGAATACCAAGCAGAGCTGAGGGCAACATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCATCGTTATAAATAGCAAAATACACAGGATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCGGATAGCGAATTGGAGTATTTCAATCATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCCTGGAAGAACAGCAAAGGCGAGCCTGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCTGTTCTGTTACCGTCTGGGTAGATGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCTTTTTGCAATCATTCATTGCGCGGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCT

>NZ_CP043028|1|1|1245920-1246456|PILER-CR
ATCTACAATATTAGAAATTATTTAAAGGTTCTAAGC	AAAGGCTGTGCCCTTGGAACCTGCACAA
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	CGCGCAAAAATCCACCGATATCGTCAAT
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	GAATACCAAGCAGAGCTGAGGGCAAC
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	ATCGTTATAAATAGCAAAATACACAGG
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	GGATAGCGAATTGGAGTATTTCAATCATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCCTGGAAGAACAGCAAAGGCGAGCCTGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCTGTTCTGTTACCGTCTGGGTAGATGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCTTTTTGCAATCATTCATTGCGCGGT
	GTTCTGTTACCGTCTGGGTAGA
TGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCT	TTTTGCAATCATTCATTGCGC
GGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC

>NZ_CP043028|1|1|1245920-1246456|CRISPRCasFinder
ATCTACAATATTAGAAATTATTTAAAGGTTCTAAGC	AAAGGCTGTGCCCTTGGAACCTGCACAA
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	CGCGCAAAAATCCACCGATATCGTCAAT
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	GAATACCAAGCAGAGCTGAGGGCAAC
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	ATCGTTATAAATAGCAAAATACACAGG
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	GGATAGCGAATTGGAGTATTTCAATC
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	CTGGAAGAACAGCAAAGGCGAGCCTGT
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	TGTTCTGTTACCGTCTGGGTAGATGT
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	TTTTTGCAATCATTCATTGCGCGGT
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC

>NZ_CP043028|1|1|1245920-1246456|CRT
ATCTACAATATTAGAAATTATTTAAAGGTTCTAAGC	AAAGGCTGTGCCCTTGGAACCTGCACAA
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	CGCGCAAAAATCCACCGATATCGTCAAT
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	GAATACCAAGCAGAGCTGAGGGCAAC
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	ATCGTTATAAATAGCAAAATACACAGG
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	GGATAGCGAATTGGAGTATTTCAATC
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	CTGGAAGAACAGCAAAGGCGAGCCTGT
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	TGTTCTGTTACCGTCTGGGTAGATGT
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	TTTTTGCAATCATTCATTGCGCGGT
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC

>NZ_CP043028|1|2|1246295-1246457|PILER-CR
	AAAGGCTGTGCCCTTGGAACCTGCACAA
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	CGCGCAAAAATCCACCGATATCGTCAAT
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	GAATACCAAGCAGAGCTGAGGGCAAC
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	ATCGTTATAAATAGCAAAATACACAGG
ATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGC	GGATAGCGAATTGGAGTATTTCAATCATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCCTGGAAGAACAGCAAAGGCGAGCCTGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCTGTTCTGTTACCGTCTGGGTAGATGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCTTTTTGCAATCATTCATTGCGCGGT
	GTTCTGTTACCGTCTGGGTAGA
TGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCT	TTTTGCAATCATTCATTGCGC
GGTATCTACAATAGTAGAAATTATTTAAAGGTTCTAAGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043028.1\|WP_151622886.1\|1246863_1247766_-\|type-V-CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl\|CDD\|213942
NZ_CP043028.1\|WP_151622879.1\|1239465_1240563_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_CP043028.1\|WP_151622883.1\|1244225_1245215_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP043028.1\|WP_151622885.1\|1246584_1246860_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP043028.1\|WP_151622877.1\|1237973_1238867_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP043028.1\|WP_151622888.1\|1251526_1251808_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP043028.1\|WP_151622884.1\|1245211_1245841_+\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP043028.1\|WP_151622882.1\|1243072_1244236_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP043028.1\|WP_151625691.1\|1256575_1257265_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130147
NZ_CP043028.1\|WP_151622878.1\|1238863_1239466_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP043028.1\|WP_151622880.1\|1240999_1241941_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP043028.1\|WP_151622892.1\|1254259_1254970_-\|peptidase	unknown	unknown	gnl\|CDD\|377289
NZ_CP043028.1\|WP_151622893.1\|1255115_1256360_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236304
NZ_CP043028.1\|WP_151622881.1\|1241940_1243086_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP043028.1\|WP_151622891.1\|1253510_1254257_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP043028.1\|WP_151622889.1\|1251813_1252173_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|377579
NZ_CP043028.1\|WP_151622876.1\|1237665_1237965_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP043028.1\|WP_151622875.1\|1236340_1237537_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
NZ_CP043028.1\|WP_151622887.1\|1247884_1251502_-\|type-V-CRISPR-associated-protein-Cas12a/Cpf1	cas12a	cas12a_cpf1_CAS-V-A	gnl\|CDD\|275131
NZ_CP043028.1\|WP_151622890.1\|1252692_1253520_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117

Protein	Function_ID	Function_description	E-value
NZ_CP043028.1\|WP_151622886.1\|1246863_1247766_-\|type-V-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|213942	TIGR04329, hypothetical_protein_SbacW_07302_partial, CRISPR-associated endonuclease Cas1, subtype PREFRAN. Members of this family are the Cas1 endonuclease of a novel CRISPR subtype, PREFRAN, found in Prevotella bryantii B14, Prevotella disiens FB035-09AN, Francisella tularensis subsp. novicida, Francisella philomiragia, Butyrivibrio proteoclasticus B316, Helcococcus kunzii ATCC 51366, etc.	2.7779e-105
NZ_CP043028.1\|WP_151622879.1\|1239465_1240563_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	6.0626e-123
NZ_CP043028.1\|WP_151622883.1\|1244225_1245215_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.88244e-30
NZ_CP043028.1\|WP_151622885.1\|1246584_1246860_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.56403e-16
NZ_CP043028.1\|WP_151622877.1\|1237973_1238867_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.21573e-65
NZ_CP043028.1\|WP_151622888.1\|1251526_1251808_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.14123e-09
NZ_CP043028.1\|WP_151622884.1\|1245211_1245841_+\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.1294e-63
NZ_CP043028.1\|WP_151622882.1\|1243072_1244236_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.98486e-13
NZ_CP043028.1\|WP_151625691.1\|1256575_1257265_+\|hypothetical-protein	gnl\|CDD\|130147	TIGR01075, DNA_helicase_II, DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	3.61348e-06
NZ_CP043028.1\|WP_151622878.1\|1238863_1239466_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	1.56603e-100
NZ_CP043028.1\|WP_151622880.1\|1240999_1241941_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.75068e-94
NZ_CP043028.1\|WP_151622892.1\|1254259_1254970_-\|peptidase	gnl\|CDD\|377289	pfam04298, Zn_peptidase_2, Putative neutral zinc metallopeptidase. Zinc metallopeptidase zinc binding regions have been predicted in some family members by a pattern match (Prosite:PS00142), of the characteristic HEXXH motif.	7.5045e-119
NZ_CP043028.1\|WP_151622893.1\|1255115_1256360_-\|hypothetical-protein	gnl\|CDD\|236304	PRK08581, PRK08581, amidase domain-containing protein.	0.00060695
NZ_CP043028.1\|WP_151622881.1\|1241940_1243086_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.24787e-14
NZ_CP043028.1\|WP_151622891.1\|1253510_1254257_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	9.42772e-29
NZ_CP043028.1\|WP_151622889.1\|1251813_1252173_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|377579	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891). This family consists of hypothetical bacterial proteins of unknown function as well as phage Gp49 proteins.	6.25103e-20
NZ_CP043028.1\|WP_151622876.1\|1237665_1237965_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.57009e-06
NZ_CP043028.1\|WP_151622875.1\|1236340_1237537_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP043028.1\|WP_151622887.1\|1247884_1251502_-\|type-V-CRISPR-associated-protein-Cas12a/Cpf1	gnl\|CDD\|275131	TIGR04330, conserved_hypothetical_protein, CRISPR-associated protein Cpf1, subtype PREFRAN. This family is the long protein of a novel CRISPR subtype, PREFRAN, which is most common in Prevotella and Francisella, although widely distributed. The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the helicase Cas3 and endonuclease Cas3-HD.	0
NZ_CP043028.1\|WP_151622890.1\|1252692_1253520_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	5.41657e-30

>NZ_CP043028.1|WP_151622884.1|1245211_1245841_+|response-regulator
MKSILLVDDDELITMSLEMIISADSDFEIVGKGCSGREAVALFDELKPDLLLMDIRMADMNGLEAAEEILGKHRDATILFLTTFSDDEYIVKALKLGVKGYLLKQDYKSLPAALHAAIDGQSVFGGAVIDKLPNLMSAGSASDEFDYRKYDISEKEYEVIQLVADGFSNKEISQKLFLSEGTVRNYLSTILEKLNLRDRTQLAIFYLKH
>NZ_CP043028.1|WP_151622883.1|1244225_1245215_+|sensor-histidine-kinase
MLYDVIIRFLAAAGLTVIINASGITTSTVVMSIYIFLILEVSLLFDNKWVYGTLTAIPFVISTCYTLNQDRIALRLFAILVLAGFTVVSSILYEQMMKYKNLLHRTRDDSKELEEILQDKNRRLMSEQDQQVHLATLGERNRIAREIHDNVGHLLSRAILLLGAISTVNTDDRLEPQLKMLADTLDESMAKMRASVHDLHDDSIDLQKNFDEIIGELKSFTVNTDLDLDEAIPTNVKLSLIGILKEAVTNILKHSNGDSVSIIMQRNYSFCTLSITDNGSISDSIKEKLSTDSYEGIGLSNIKNRATSLGGDAYFYTDNGFTIFARLPL
>NZ_CP043028.1|WP_151622882.1|1243072_1244236_+|ABC-transporter-permease
MSVFNAILKSLKANITTIIVYLAIFTVFGNMQAKATVSTQEDAFEEMTVKVAVTDNDDSKLSQALVDYLTETQEVVDPQTDDPQVMNDNVRFLIYEYALIIPEGFEEQIMSGDVENALTYIAPGTTASQFLLTEKLNDYLQDVVVYLNSGYSEEEAIALTHGQMVELSKTQATVIDEHEENHRSFYTGMFTFNGYTMMMLLCICGACTLTFMKNRDVSNRISVSGMHFFTRNVATISAVFFIGFVITTVVIMVIQLMGLEYANDKLLYYAIDTYTLMFVGLGMAYFICSITSNENLINMVANMFVLSMSFLCGVFVDTQYLSDSIVKAAHFMPLYWYTTALKFINDTPINNIWSRQFGTYLLIEILFALMFFAAGMVISRKKEQYAL
>NZ_CP043028.1|WP_151622881.1|1241940_1243086_+|ABC-transporter-permease
MFGRIFVYKFKEIIRNRYMVGWNFLFPIVLATVFYMGFGNLIKDDPDNFHTIEAGYVNTNHEESDFEKILEQLEDETDGNVPILTLRKYDTRQAAMDAMNSDEVFGFYVEDGDEIETIVPKNGYHATTMNQIVREYENKKTVVETIAKDHPENIQTALDMITENVEVMKEHDFGNNTSPYVQYFFALIAMSSLFSSWISTAILEGICANMTEQGKRFECSPTNKLMAIVAGICAAMVMQAFSNAVVVIYVQEILKISFGAPLVNIIAITTLGSVLGVSAGVLMGSFIKNSRLLIVVPLCFTMTCSFFSGLMWHQIRQYIESRVPILNRINPASLLVDCLYTRATYGKTDMYYQDIMLMSIMIVVSLFISAILLRRRKYVSL
>NZ_CP043028.1|WP_151622880.1|1240999_1241941_+|ATP-binding-cassette-domain-containing-protein
MSTNVVSIENLVKRYGDKVAVDHFSLNVNEGEILGLLGPNGSGKTTTINCLLSLLQYDKGTVTIFNKEMKPEAYDIKSQIGVVLQNVAVIDTLNVYENVDFFCGLYIRDKKLRKQYVEEALEFTGLTEYKKYKPKKLSGGLLRRLNIACGIAHKPKLIIFDEPTVAVDPQSRNAILEGIKKMNRDGATIIYTSHYMEEVEELCSRVVIMDHGKNIANGTANELKASLMSRETIRVNLPNKSDEVINGLKEINHVYKVKEDGDDLVIKCDGGDHNLVHVLSYLTDNNIPFGHVSTELPTLNDVFLEITGKELRD
>NZ_CP043028.1|WP_151622879.1|1239465_1240563_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MEDKYYMERALALAEQGAGFVNPNPMVGAVIVKDSQIIGEGYHEKYGGLHAERNALKDCKEKGNNPKGATMYVTLEPCCHYGKTPPCTEAIIESGIERVVIGTLDVNPVVAGKGAQILRDNGIRVEVGMLENECKKLNRVFNKYMSTKLPYVVMKYAMTADGKIATASGESKWITGDAARENVHRLRKNLSGIMVGVSTVIIDNPSLDCRLDEPSNNPVRIICDSYLRTPINSKIVETASEIKTIIATSSENESRIAEYEKAGCTVLKLPRTENGIDLNSLMVELGNMGIDSILLEGGGTINFSALESKIVDEIHIHMAPKIFGGNSKSPVEGLGISDINDAIKLNPINTTWAGDDLIIENEVIY
>NZ_CP043028.1|WP_151622878.1|1238863_1239466_-|riboflavin-synthase
MFTGIIEELGKVQRITRGGKQQRITISCSKVLEDIHMGDSIAVNGVCLTVVEHNANGFSADVMNETFSRSSLGALGVGSPVDLERAMAANGRFGGHIVSGHIDGTGIIKSIRQDGNAVWFEIRTDGKIMEGIVEKGSITIDGISLTVAVVSYDSFKVSIIPHTLKETVLGHKKIGDVVNLENDVVLCQDLVQIKMRGSAS
>NZ_CP043028.1|WP_151622877.1|1237973_1238867_+|IS3-family-transposase
MYTEVSAKVEASKVTGHRVSTSGMLKFLGVSRSGYRSFLNRKVSATKQRKEAVKKKIQTIYDDSKQNYGAPKIAQTLRNSGETISDRTVGLYMREMGIKAQWVKPWTTTTRDSDFSKELHNILDEQFNPDRPNAVWCTDITYIWTQNGFVYLNCVMDLFARKIIAWTLAETMEVSTVIETIEKAKANRDTDLPLIIHSDRGSQYVSKAWQEATAKMQRSYSHSGYPYDNACIESFHSLIKREWLNRFTITDYRHAYMLVFEYIEAFYNTVRIHSHCNYMSPDEYERLYERVKSPSVA
>NZ_CP043028.1|WP_151622876.1|1237665_1237965_+|transposase
MSRQRKQHSKQFKLDAINYRKEHPDLTQSECAKNLGIGVSTLARWESQYRDHDGDIPVRGSGNYESDEAKEIARLKRELRDAQDALDVLKKAISILGKN
>NZ_CP043028.1|WP_151622875.1|1236340_1237537_-|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MRRESIERAIDDLKNGKVIMVMDDEGRENEGDFICAAEFATTENVNLMASVGRGLICMPMSEELAFKLALPPMVSHNTDNHETAFTISIDHVDTTTGISAAERGMTARNSVRDDVSPLDFRRPGHMFPLVAKAGGVIERPGHTEATVDLMKLAGLKECGLCCEIMAEDGTMMRGEALRKLAEDMGITFITIPELVEYRKVYDKLVECVSIAKMPTRYGEFMAHCYINKLNGEHHVALVKGDITDGKDVLCRVHSECLTGDVFGSMRCDCGQQFDAAMKAIEGEGRGVLLYMRQEGRGIGLVNKLKAYKLQDEGMDTLDANIALGFPGDLREYYTGAQILRDLGIHSLNLLTNNPDKVYQLSDYGMEINCRVPIEIQANKYDVFYLKTKKARMGHILAV
>NZ_CP043028.1|WP_151622885.1|1246584_1246860_-|CRISPR-associated-endonuclease-Cas2
MIIISYDISNDKLRTRLSKYLSKFGHRIQYSVFEIDNSEKILNNIMADISNKYEKRFSQEDSVIIFVLSSSCKTVRYGYAKNVEKDLVMIT
>NZ_CP043028.1|WP_151622886.1|1246863_1247766_-|type-V-CRISPR-associated-endonuclease-Cas1
MSDSDGKVKYQHTCYRIFCVIVIGDCTITTGLLRRAKKYAFSICFMTYSLRMYSVIKAGLEGNNLLHKKQYEYNGLGLARLIIYNKILNQRNTLNQIRKKTDYLKEGIALLDEYLERLSATDDWNRNTLLGIEGNAAKVYFPRVFENTKWKSRKPRIKFDYINSLLDIGYTILFNFIDCILNVYDFDVYQGVLHTNFYMRKSLVCDLMEPFRPIIDWRVRKGINLGQFKEEDFLVVSNQWQLEYKKSNVYSMIFLEDLLENKECIFLYLRSYYRAFMKGKDASEFPIFDINSNDVVLMEG
>NZ_CP043028.1|WP_151622887.1|1247884_1251502_-|type-V-CRISPR-associated-protein-Cas12a/Cpf1
MYYQGLTKLYPISKTIRNELIPVGKTLEHIRMNNILEADIQRKSDYERVKKLMDDYHKQLINESLQDVHLSYVEEAADLYLNASKDKDIVDKFSKCQDKLRKEIVNLLKSHENFPKIGNKEIIKLLQSLSDTEKDYNALDSFSKFYTYFTSYNEVRKNLYSDEEKSSTAAYRLINENLPKFLDNIKAYSIAKSAGVRAKELTEEEQDCLFMTETFERTLTQDGIDNYNELIGKLNFAINLYNQQNNKLKGFRKVPKMKELYKQILSEREASFVDEFVDDEALLTNVESFSAHIKEFLESDSLSRFAEVLEESGGEMVYIKNDTSKTTFSNIVFGSWNVIDERLAEEYDSANSKKKKDEKYYDKRHKELKKNKSYSVEKIVSLSTETEDVIGKYIEKLQADIIAIKETREVFEKVVLKEHDKNKSLRKNTKAIEAIKSFLDTIKDFERDIKLISGSEHEMEKNLAVYAEQENILSSIRNVDSLYNMSRNYLTQKPFSTEKFKLNFNRATLLNGWDKNKETDNLGILLVKEGKYYLGIMNTKANKSFVNPPKPKTDNVYHKVNYKLLPGPNKMLPKVFFAKSNLEYYKPSEDLLAKYQAGTHKKGENFSLEDCHSLISFFKDSLEKHPDWSEFGFKFSDTKKYDDLSGFYREVEKQGYKITYTDIDVEYIDSLVEKDELYLFQIYNKDFSPYSKGNYNLHTLYLTMLFDERNLRNVVYKLNGEAEVFYRPASIGKDELIIHKSGEEIKNKNPKRAIDKPTSTFEYDIVKDRRYTKDKFMLHIPVTMNFGVDETRRFNEVVNDAIRGDDKVRVIGIDRGERNLLYVVVVDSDGTILEQISLNSIINNEYSIETDYHKLLDEKEGDRDRARKNWTTIENIKELKEGYLSQVVNVIAKLVLKYDAIICLEDLNFGFKRGRQKVEKQVYQKFEKMLIDKLNYLVIDKSRSQENPEEVGHVLNALQLTSKFTSFKELGKQTGIIYYVPAYLTSKIDPTTGFANLFYVKYESVEKSKDFFNRFDSICFNKVAGYFEFSFDYKNFTDRACGMRSKWKVCTNGERIIKYRNEEKNSSFDDKVIVLTEEFKKLFNEYGIAFNDCMDLTDAINAIDDASFFRKLTKLFQQTLQMRNSSADGSRDYIISPVENDNGEFFNSEKCDKSKPKDADANGAFNIARKGLWVLEQLYNSSSGEKLNLAMTNAEWLEYAQQHTI
>NZ_CP043028.1|WP_151622888.1|1251526_1251808_-|helix-turn-helix-domain-containing-protein
MSDWSNYKEKVRKTNPKLSRDIDEAEEISAIVGAMIQQRHNLHLSQRDLAALCGIPHSSVARIESGASIPNLATMLKIFKQLELSFTVQPMRK
>NZ_CP043028.1|WP_151622889.1|1251813_1252173_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MFQIDFYRTARGECDIEEFLEGLEKKADKNKDARIQYKQAIQYIQFLEDYGTQLGENVTKHLEEDIWELRPGNNRVLFFYFRDNTFVLLHHFRKKTQKTPRREIEKAKAERNDWISRKG
>NZ_CP043028.1|WP_151622890.1|1252692_1253520_-|helix-turn-helix-domain-containing-protein
MDLKDYQHEVVVTDAGLPFKLFSFEGANGNYVRDKHWHRSIEIFAVWEGKLDFTLHDKRMPLSAGEFVIVNSNEVHSIVAPNPNRTVVLQIPQDTFAEYFTDDQFIWFSHGDRETDHRVFTLLQEMYLIYTNGEEGNKLQVLSLYYELLYILVTKYRKFNVNEDILKSNKQLKKLSSITRYMKDHYAEPLSLEMMAEQFNYSPSYLSRMFQKHAGINFKDYLLGIRLEHAVRELEETGGQIVDIALGNGFPNSKAFSNAFREKYGMLPSEYRKTN
>NZ_CP043028.1|WP_151622891.1|1253510_1254257_-|GNAT-family-N-acetyltransferase
MNYLKSILKVNNLADLQPDYPEGTLVLSDSQAVIDECVSKGIPVAAYEHDGISGLKCDHVLIDVDDVDDEVFENIYRRCVDVPWDISKTERTYIREFSMDDLDDLFELYAKPGMTQYMEPLFEYEEERKYELNYIQYIYKLYGFGMWLIYDKITKDLIGRAGIEIRDTCDENNQAELGFCIASDRWGQGLAFEVCSEIIRLAKDEYGLSSLIARCDPENLASRRLLEKLGFQFKCHQEDGDWRYMLWI
>NZ_CP043028.1|WP_151622892.1|1254259_1254970_-|peptidase
MYYGMGYGYGYDWTIILVLIGAAISGLASLNVRRTYSRFSKIRNYRGLTSNQVAEQILHSAGIYDVRIERIRGNLTDHYSPNEKVLRLSDATYGQTSVAAIGVAAHECGHAIQHQENYAPLKLRAASVPLANIGSWVSWPVILIGLLIGSTPLAQLGIILFTFVVAFQLITLPVEFDASSRALRILDQSHILDGDEHDGAAKVLKAAALTYVAALFTTILQLARLILIVNGRSRRD
>NZ_CP043028.1|WP_151622893.1|1255115_1256360_-|hypothetical-protein
MKKRFRVGRKIMVVVLAAVLCLPVILNPMEAEAAKKKGNSGAATYAVGDDVAFGFFDGTILSWTILTYDDTTKQALVVSRKPLNSRSVTAYRLAIDQMYRDKKTEAGYVRWSENYWRGWLNKTFYETCFNDAERAMILRTTLSETDAKNSIMNYYHDTSMDAYVVQGNKKNSLNMAIYNSQTTTKDYIFFLSSDEYTAHKDTMKNETKLIFPLRTNAYDDPTQGLFGNDTDKLIYRMYYYAGDSIRPAMNIQLGEPEATTDDSSSTTKSTTNSANSKISTSDTSKSTTNTASTSNTKATATATSATTSTATASTASNSKKYANNGTNTGDLTLPDDSEYTTSVGATAQVAIDLEYLNSTEKNYTITYKSSDASVFTVDSSGVITAVGKGSGTITARMKKSNGKTYTMSCRVDVN
>NZ_CP043028.1|WP_151625691.1|1256575_1257265_+|hypothetical-protein
MLNLLRKEEPVLRAEITALYSVLDHKLGLHGAEVPITFGMDEKALGSYLPASYDNEEQFQFSLFFIGFCMNEQLSKNDRVNLYKHEYAHYMAHHISIPEKYNWQPGVHGSAWKYCCSLIGAIPSDYYIEDANIKKIDYDSVLTRPNVDHKQVQMLDTYRTQRMYKNMENAKVKYEVGDTVSHPKFGEGTVKEIEQQPSSVRLHIAFGDEVKIIDQKWLVKTGYSKVSER

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Crispr_ID: NZ_CP043028_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043028_2

1636360-1636456

Orphan

Consensus_repeat	Method
TCTACCAACTGAGCTATTGAGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043028_2

>merge|NZ_CP043028|2|1636360-1636456|CRISPRCasFinder
TCTACCAACTGAGCTATTGAGGATTATTATCTTCCTATCAAACTTTCGGTAAAACAGGGAACTCGCCGCATTGTTCTACCAACTGAGCTATTGAGGA

>NZ_CP043028|2|2|1636360-1636456|CRISPRCasFinder
TCTACCAACTGAGCTATTGAGGA	TTATTATCTTCCTATCAAACTTTCGGTAAAACAGGGAACTCGCCGCATTGT
TCTACCAACTGAGCTATTGAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043028.1\|WP_151623181.1\|1648224_1648731_-\|YcxB-family-protein	unknown	unknown	gnl\|CDD\|379553
NZ_CP043028.1\|WP_151623171.1\|1634601_1635042_-\|flavodoxin	unknown	unknown	gnl\|CDD\|180484
NZ_CP043028.1\|WP_151623182.1\|1649031_1651191_-\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225094
NZ_CP043028.1\|WP_151623172.1\|1635095_1635374_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|376373
NZ_CP043028.1\|WP_151623169.1\|1632032_1633670_-\|glycoside-hydrolase-family-25	unknown	unknown	gnl\|CDD\|119376
NZ_CP043028.1\|WP_151623166.1\|1625695_1627585_-\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NZ_CP043028.1\|WP_151623179.1\|1647058_1647793_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP043028.1\|WP_151623165.1\|1623810_1624662_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224094
NZ_CP043028.1\|WP_151623173.1\|1641990_1643013_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|224919
NZ_CP043028.1\|WP_151623167.1\|1627586_1628141_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NZ_CP043028.1\|WP_151623168.1\|1628241_1631790_-\|family-16-glycosylhydrolase	unknown	unknown	gnl\|CDD\|185693
NZ_CP043028.1\|WP_151623180.1\|1647796_1648228_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NZ_CP043028.1\|WP_151623170.1\|1633772_1634519_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP043028.1\|WP_151623178.1\|1646606_1647059_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP043028.1\|WP_151623164.1\|1622212_1623793_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173855
NZ_CP043028.1\|WP_151625721.1\|1624609_1625485_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223674
NZ_CP043028.1\|WP_151623175.1\|1644093_1645119_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP043028.1\|WP_151623174.1\|1643338_1644028_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP043028.1\|WP_151623176.1\|1645108_1645693_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043028.1\|WP_151623177.1\|1645694_1646606_-\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|274246

Protein	Function_ID	Function_description	E-value
NZ_CP043028.1\|WP_151623181.1\|1648224_1648731_-\|YcxB-family-protein	gnl\|CDD\|379553	pfam14317, YcxB, YcxB-like protein. The YcxB-like protein family includes the B. subtilis YcxB protein, which is a functionally uncharacterized transmembrane protein. This family of proteins is found in bacteria, and is approximately 60 amino acids in length.	1.42327e-05
NZ_CP043028.1\|WP_151623171.1\|1634601_1635042_-\|flavodoxin	gnl\|CDD\|180484	PRK06242, PRK06242, flavodoxin; Provisional.	1.79763e-62
NZ_CP043028.1\|WP_151623182.1\|1649031_1651191_-\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_CP043028.1\|WP_151623172.1\|1635095_1635374_-\|acylphosphatase	gnl\|CDD\|376373	pfam00708, Acylphosphatase, Acylphosphatase.	4.60811e-18
NZ_CP043028.1\|WP_151623169.1\|1632032_1633670_-\|glycoside-hydrolase-family-25	gnl\|CDD\|119376	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.	2.92137e-63
NZ_CP043028.1\|WP_151623166.1\|1625695_1627585_-\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	1.45787e-46
NZ_CP043028.1\|WP_151623179.1\|1647058_1647793_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	1.23195e-58
NZ_CP043028.1\|WP_151623165.1\|1623810_1624662_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.04749e-95
NZ_CP043028.1\|WP_151623173.1\|1641990_1643013_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	3.04569e-94
NZ_CP043028.1\|WP_151623167.1\|1627586_1628141_-\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	6.99538e-82
NZ_CP043028.1\|WP_151623168.1\|1628241_1631790_-\|family-16-glycosylhydrolase	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	1.2674e-71
NZ_CP043028.1\|WP_151623170.1\|1633772_1634519_-\|HAD-IA-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	1.17114e-23
NZ_CP043028.1\|WP_151623178.1\|1646606_1647059_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.15617e-39
NZ_CP043028.1\|WP_151623164.1\|1622212_1623793_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173855	cd08490, PBP2_NikA_DppA_OppA_like_3, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	9.9319e-156
NZ_CP043028.1\|WP_151625721.1\|1624609_1625485_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.23277e-95
NZ_CP043028.1\|WP_151623175.1\|1644093_1645119_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP043028.1\|WP_151623174.1\|1643338_1644028_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.87593e-87
NZ_CP043028.1\|WP_151623180.1\|1647796_1648228_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	3.6676e-59
NZ_CP043028.1\|WP_151623177.1\|1645694_1646606_-\|ribonuclease-Z	gnl\|CDD\|274246	TIGR02651, Ribonuclease_Z, ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGRFAMs model TIGR02649, are designated ribonuclease BN. [Transcription, RNA processing].	1.16498e-118

>NZ_CP043028.1|WP_151623172.1|1635095_1635374_-|acylphosphatase
MKEVVRYKMVFTGRVQGVGFRYKASHVANQYRLTGYVKNEYDGSVLVEAQGSEQEIYMFIKVLYADRYIDIYEIEKERLPVEEDERSFIIQY
>NZ_CP043028.1|WP_151623171.1|1634601_1635042_-|flavodoxin
MKSIIVYASTHHGNTKKVVDAIVSECGVESVDAISVQEKDLSEYDLIGFASGIYAAKFHPQIIKFAQDNLPDNKKIFFIMTSAMDKDFSKSITSSLKDKKFDVVGAFSCKGYNTFGPFKLVGGTGKGHPDEKDLKNAVEFYKGLTL
>NZ_CP043028.1|WP_151623170.1|1633772_1634519_-|HAD-IA-family-hydrolase
MKYKNYIFDLYGTLIDIHTDEKNPKLWEYMSVYLKDNFGTVIEATELKSNYLKLCKSEEKKLAKENGSNHPEIKIEWVWEKLIGRQVPDFEMRTLCNSFREKSRDKLVRYEGVAEALTAIKDAGANVYLLSNAQRLFTEKELEDTKLTQYFDDIFISSDKGIKKPDGQFLQDLIDKHSLNKEECVMIGNEVLADVGVAMAVGVDSIFLNTYNHPRWDIKRDLSRCGADMEKVKLILEVTPAEYKSLII
>NZ_CP043028.1|WP_151623169.1|1632032_1633670_-|glycoside-hydrolase-family-25
MKGEYEHLNNDGRIAHSRNRKRMNAMRRRKLIILGAAAVLVLEIFVFTIFKIVGKNSDEVEVADNNLQTEKTIDPNADIKIEVVENAEDVQDSAQEDEQSSEEVTAEEAKADPQTNAVTEKGEAVNVVDIVSASNVGENASITYGIDVSRFQGTIDWAQVAASGINFAMVRVGYRDSQTGEIKADTNAKYNMQEAEKNGIKIGAYFFSTAVNATEANEEATWVANYISKYPITYPVGYNCEGFENSTSRQYNLTKDERSNVAIAFLDAIYKAGYTPIFYASKNELSNNAKWNTSEIEKNFKIWMAWYNQDTSNLASGPAYSGKCAMWQYTNQGTIPGISKKVDVDVAYFGYNGTETAKDTSARETATADVEALMKFTDTNETVTAKSKTNLRDKPSQGADSNVKVTLQNGQTATRTGTSNSGWSRVVYDGVTYYAVSSYLTTDLSAPAPTPEAAPAEPTPEPAVAPATSGFKTKFTDCSELITAKEMVNLRTKPSVTDADSSVVVTLYNGMTATRTGINNEYGWSRIDYNGQTLYCVSSYIKVVE
>NZ_CP043028.1|WP_151623168.1|1628241_1631790_-|family-16-glycosylhydrolase
MKKGKWFNFFAIAMAATVAVTSVPVTGVQAKTKDSIKDKYSDEGYELVWNDEFEGDSLNTSDWNVEQHEPGWVNSELQRYTALDEGNIEVKDGKLYLKPHVEETKVENEDDNEEEEVVEEKVSHIAFDVNVSEDKKDSDTIALQVNFGKIEDSEAGTAAATVKLSNISLKEDGEELLRDTSFSGSDWYCGFNDPGKGSVSYEDGKAIINIENSGDQNWHIQLQQNGLKLEAGHSYSFEMDAVASADRMVEISFLDPDNGYDWYGGSKATIEGSKLSGGSSSSSSSSKREITSGRITTQNKHDFTYGRFEARAKVPTGKGYLPAFWLMATDEGLYGQWPRCGEIDIMEVMGQDTTKSYHTIHYGYNSGNGHKENQGTKEIIENDFADEYHVFRVDWEPGQITWYVDDEKVFSTNDWYTGADEDSQLTYPAPFDQDFYVILNLAVGGSWVGYPNDDVYAKMNDDNYTIDYVRVYQKSEEEYEKEEAKAKRPEKEPVTYREADEEGNYIINGDFSKDIAIDGAEDADKDNWVLHLESDAKDSTYKVKNNKIKITPSAVGSQNHSVQLKQAGIPMYKGWEYELTFDAVADEERAIIVDVEGPDRGWTRYMQDTSVKVGTKKQSYTYTFTMNDKTDPNTALEFNLGKQKSTAAVTISNVKLVHKSGEKIEETNEKEIRSDGNYIYNGGFDQGEGRLGYWEIEDADKEAFSVTNKKNSRMLKVVAPNGTSKSNPLKIGQRELSPISAGQYEISFDAYTEDGEEDGLTVKVAGETYTPALTGTQKHFSKKITVEKSLTRKASNVEFVFTKPGTYYLDNAFLTEAALIKNGSFNAGIAGFSPYIYDSVNANYVIDNMNGNDNTFAITIEDTVADNDDNCWYIQLNQDGVNLEKGKTYKVSFKAKSSIERVIKYSLQEFEGAWTNYSGTGSVEIGPEWKTFEHTFTMENESDPNTRFNITMGSVDGIRIKEKHDVYIDDIVLVEVDEDEPVPEPSKSEDAPKTKPSDSPAVDEPKAKPSDKPVVEESENKTEETKSEQKTETKTEQKSSSNSSQSSSTSSSQSSTSTSAAANTKIADTQVPSTGDVVAAQETIKVANNKSATKTKKTASTASTKSTEQTETETEEEVSGEATEEIVEETQIKEEETPTTTTETEEEVVKVEEETPAESTGFFAAIARFFKAIAEFFANLFR
>NZ_CP043028.1|WP_151623167.1|1627586_1628141_-|LemA-family-protein
MVVGIIVLVLVVLIVLWAISTYNSLVRLRTQVEEGYSTMDVYLKKRFDLIPNLVATVKGYAKHEAETLEKVIAARNAAYSAGDKEGIAQAEGQLTSTLKTLFAVAESYPDLKANTNFIDLQNSLKGIEDDIANARKYYNGTVKTYNTKIQLFPTSIIAGFGHFEKFPFFEVSDSAERENVKVEF
>NZ_CP043028.1|WP_151623166.1|1625695_1627585_-|DUF2207-domain-containing-protein
MKIKAFFAGIVLSLALVAGFNPLVAKAEYQDYYIKDLDVDIVVNEDNVFTIKETYVYDFIESHHGPIRSFVLDHYRNHGEDGYDYIKARVKHLRVSSPDAVSDIANEETDGDTYTVYIGDEDETYTGEHTYVFKYDYKIYSKDPLVGKDELYYNIVGTGYDCPIEHVTWTVHMPKDFDTSTIGYSVGDEGSSGYDSYLKCSVNGKTITGEFTDTLQPYEGITIRAELPEDYFVYKDYSVIGLIIAGILSLLGIGYSLPIGVQKDVVEVVNFYPPEGMSPVEMETIYTAQTPQKITAMIPYLANKGYFTIHQGEKKNDFSFIIKKRADGELDRAGSLFFQGILENHAVGDEVKVKKLKNHFYTTIDAIKSYYAIRASKQYDSKSVTKSCMATTVGLLVGLIGMAVMYFLVGHEPFEWGYFIVFAILVAAAGFVGFMAAISNFLKWIARAVMALAAAFALGNLLTGGVADLWFAGMLLVCVVVNIIVMLAQYNQFRTAKSREQLGQILGFKNFIETAELDRLKMLSEENPNYFYDILGYAYVFDLEKTWIKNFEELQNSIPEPTWYDGGNFIGNYMVYDSFNRMMRDTEKVMVSRPSESYSGSGSSHHGGGGFSGGGFSGGGSGGGGGGAW
>NZ_CP043028.1|WP_151625721.1|1624609_1625485_-|ABC-transporter-permease-subunit
MMRLAGSDVVEQKMLNTGQVVSEAQLQAAKAELGLDRPFLVQYFSWLNDLLHGDMGVSFVSGQDIFQTFISKLPATLFLTLTSIVLTVLISIPLGVIAAVYQNKFWDYFIRFFSFIGNSMPNFFVSLVLMYWLAIRLGLFPIISREVSMTSVAMPTFTLAIAMSAKYLRQVRATVLDELSKDYVVGAKARGVKFSTTLFKSVLRECLVTIITLLAISIGSLLGGTAIVESIFMWDGVGKLAVDAINMRDYPMIQAYVMWMAIIYVTVNLISDLTYRLLDPRIRLEDAKLEN
>NZ_CP043028.1|WP_151623165.1|1623810_1624662_-|ABC-transporter-permease-subunit
MVCWIHVSDWRTLSLKTRLIVFTILAALLIFVAIFADGLCPYDPYAQDLTVAYSAPGPEHLLGTDAFGRDMLSRVIVGAKVSVLSTLALVGVITIVGALIGVSAGYFGGAFDTVMMRISDFCMAFPGLVFALAVAAILGGGVVNAVIALAVISWPKYARVARSQTLSLKVSSFVQAAVVAGANPPQIIFRHILPNILGPILVTSMLDIGTMMMELAGLSFLGLGAQPPTAEWGSMMSNGRSMLQTYPWVVLSPGLGIFVSVVIFNLLGDSVRDVIDPKNSRFR
>NZ_CP043028.1|WP_151623164.1|1622212_1623793_-|ABC-transporter-substrate-binding-protein
MKIKKTIALVLSLALAATAFIGCGNTTKDSASESQTQETQTSGKKVFTFGDTTFNAENEEPTIDAHDAYCGWPCIRYGIGETLFKFDDNMQLEPWIAESYENVDELTWKITIKDGVTFSNGKAVDAAAVKACIEDLVAVHERAAGDLSIDTIEAEGQTLTIKTQTPKPTLINYLCDPYGCIIDVDAGNEGGIVVGTGPYVATELVTDDHISLVKNEKYWNGTVKVDEITVLTISDGDTLALALQNGDIDAAYGMAYASYPIFENDAYTFSSTATSRAFYCQMNYKSDIIKDDAVRKALAMGIDKESFVNTLLNGYGYVGAGAFPETFTFGGQNVKTDSYDPEGAKLVLEDAGWVDTDGDGIREKNGKTLTIRWISYPSRQELPLLAESAQATLKDIGFDIQLNVTADHGQIVSDPEQWDVYAAAFVTCGIGDPMYFFTTHCLDDSSKNRGGYHNDNLQALGDKMNETFDADARGDIAIEMQQQILDDNAFIFCSFLKMSMISKSNVTGLVAHPSDYYELTADLDIN
>NZ_CP043028.1|WP_151623173.1|1641990_1643013_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MLYFSCDYAEGCHPKVLEALSKSNMISTPGYGEDDYCKEAKEKIREYIKCPEADIYFLVGGTQTNQVVIDSMLSNYDGVVAAATGHIAVHEAGAIEYSGHKVIAIPAHEGKLYASELKQMLVDHYADDSAEHMVNPGMVYISFPTEYGTLYSRDELESISSICKEYNIPLFIDGARLAYGLAAQDDMTMADIAKYADVFYIGGTKVGALFGEAVVFTKGNTPKHMITQIKQHGALLAKGRLLGVQFGAMFTDALYMEMGAHAVKQASIIREDLRGKGYSLYMENPTNQIFVIMENESLKSFGEKVSYGFWEKYDESHTVIRIATSWATSDESVEALTKIL
>NZ_CP043028.1|WP_151623174.1|1643338_1644028_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MNKFTAIVLAAGSGKRMQQEVPKQYMRLGDAPLMVHCLRTFQESKCTQIVLVVAPGDVEKCRKEIIERYHIDKCIAIVEGGEERYNSVYAGLQVINDGYVLIHDCARAFVSVDIIHRCMSAVALYESCVVGMRSKDTVKLTDTHRKVLDTPDRSNVWIVQTPQCFEYNLIRGAYDRIIADADTSITDDAMIVEKATDHDVHMIEGSYLNIKVTTPEDIAFGEAILRSKH
>NZ_CP043028.1|WP_151623175.1|1644093_1645119_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MDTKEIKILAIESSCDETAAAVVINGRDVRSNVISTQIPLHTLYGGVVPEIASRKHIERINQVIEQALEDADMGLEDMDAIAVTYGPGLVGALLVGVAEAKAIAFATGKPLIGVHHIEGHISANYIENKELKPPFLCLVVSGGHTHLVRVADYGKYEILGRTRDDAAGEAFDKVARAIGLGYPGGPKIEKAAHEGDPFAIQFTRPKVSDGVYDFSFSGLKSQVLNYINGAQMKGETINDADIAASFQQTVIDTLCEHAALAIDEFGMDKFAIAGGVASNQTLRGAMEQMCKEKGVEFYHPSPILCTDNAAMIGAAAYYEYLAGRRDSWDLNAIPNLKLGER
>NZ_CP043028.1|WP_151623176.1|1645108_1645693_-|hypothetical-protein
MKKVLRIGIAVICMVSLVVGYYAYLSTRKASASTEKNVELSEVQTIISKNFTTDYPVTPRAVVKWYNRIITAYYAEDFDQKQLEQMADQARMLMDDELLSYNPKDTYLASLNLEIEDYHNRSRTIVSSTVSDSKDVQYKTVHGYECAFLTSNYFVREGSSYNRTYENFCLRKDSNGHWKILTWRLSTEDEINGY
>NZ_CP043028.1|WP_151623177.1|1645694_1646606_-|ribonuclease-Z
MLDVCLLGTAGMMPLPNRWLTSCLFRFNGEGLLIDCGEGTQVALREAGFSPNPISIICLTHYHADHVSGLPGFLLSMGNSDRTEPITIVGPKGLERVVNSLRVIAPELPFEINFHEITEPDETFEILGYHIHAFKVNHNVLCYGYTIDIPRKGRFDVEAAKNLGLPVTLWNPLQKGQTVQHEGKTYTPDMVMGNARKGIKVTYCTDTRPTKSLVDAASESDLLICEGMYAEEEKLIKAKQNKHMTFYEAAKVAKDANVSKLWLTHFSPSMTGHKRYMKAVCDIFPQAQLGEDGKFLELDFAEE
>NZ_CP043028.1|WP_151623178.1|1646606_1647059_-|ribosomal-protein-S18-alanine-N-acetyltransferase
MAFDFRYATESDIEQIVAIEEEAMSNPWNAVAYQEAISSDHAFIIVAEDSGTIAGFAVFYLTAPESELPDIVVSEEYRGHGIGKKLLAHSIEELKSKGIDIIFLEVRVSNTPARHLYTSLGFEEIGRRKYFYSNPVEDAICMRLDIEKDR
>NZ_CP043028.1|WP_151623179.1|1647058_1647793_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MKILGIDGSGLVASVAIVEDDNLIGEYTTGYKKTHSQTLLPMLDELTKMVELDLNSVDAIAVSAGPGSFTGLRIASATAKGLGLSLGCPIVSVPTVDALAFNLWGSDSLICPIMDARRGQVYTGLYLFETNGDFKVVKAQCAVDFSEIAEDINANGQPVTFLGDGVPVFKDKIAEIIKVPYRFAPAHLNRQHASSVAALGSIYYANGDCEIAADHRPEYLRLSQAERERMEREKSQMPEKEGKA
>NZ_CP043028.1|WP_151623180.1|1647796_1648228_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MIEVFETNSPEETDALGRKLGAEATSGQVFTLIGDLGVGKTVFTQGFATGLQIDEAICSPTFTIVQVYDTGRLPFYHFDVYRIGDVEEMDEIGYEDYVYGDGVSLIEWANLIEDILPEHYTQITIEKDLEKGFDYRKITVEQI
>NZ_CP043028.1|WP_151623181.1|1648224_1648731_-|YcxB-family-protein
MGQSTSFSVKIKEEDLYRFNLHHAYTSSQGIISVVLFILLIAVWILRFPQLSLIYKVLYPVIATVFLLYIPMSLKLRVKTQMQQEVFQYPLTYELVDTGIKVSSPSTEEPAELPWEYVYKISTWKDYLLIYSNRVNAYIIPRKDIKDVYEPIIDYIKNHVEDYKLQIK
>NZ_CP043028.1|WP_151623182.1|1649031_1651191_-|S1-RNA-binding-domain-containing-protein
MDINKKIAGELQVRVAQVEAAVSLLDEGNTVPFISRYRKEATGGLNDEQLRTLAERLTYLRNLEDKKATCLASIEEQGLLTDELKKAILEAETQVAVDDLYRPYRPKRRTRATIAKEKGLEPLANIIILQMTDKSLEEEAKAFINSEKEVNTPEEAIAGACDIIAESISDDADYRTWIREKTFKFGRIVSKAKDAEAESVYENYYDYDESVAKLPGHRILALNRGEKEKILKVSIEAPVEDILNYLQKKIISRDNVNTNQALINTIEDAYTRLIAPSIENEIRNNLTEMAEDGAIKVFGKNLTQLLMQPPIAGRNVLGWDPAFRTGCKIAVVDATGKVLDTTVVYPTAPQNKVEETKKVIKALIKKYNVSLISLGNGTASRESEQIIVDMLKEIPEKVEYIIVNEAGASVYSASKLATEEFPNFDVGQRSATSMARRLQDPLAELVKIDPKSVGVGQYQHDMNQKKLDETLAGVVETCVNAVGVDLNTASASLLEYVSGINKTLAKNIVEYRETNGRFNSRAELKKVPKLGPKAFEQCAGFMRITGGKNPLDSTAVHPESYEAAKALLEKLGFSTKDIAAGTLKDIHKSISNIKALSTELGVGEMTLEDIVKELEKPGRDPREDMPKPILKSDVLEMKDLKPGMQLKGTVRNVIDFGAFIDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVDVEVISVDEKKGRIALTMKLNKVKKA

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Crispr_ID: NZ_CP043028_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043028_3

1977463-1977569

Orphan

Consensus_repeat	Method
TTCAACTCCGCTTAATCTCATTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043028_3

>merge|NZ_CP043028|3|1977463-1977569|CRISPRCasFinder
TTCAACTCCGCTTAATCTCATTATTTTAATGTCTTTAAGCTAATTCTAGCACCATTTTTTATCCACTTCAACCGAAAATGCACTTCAACTCCGCTTAATCTCGTTAT

>NZ_CP043028|3|3|1977463-1977569|CRISPRCasFinder
TTCAACTCCGCTTAATCTCATTAT	TTTAATGTCTTTAAGCTAATTCTAGCACCATTTTTTATCCACTTCAACCGAAAATGCAC
TTCAACTCCGCTTAATCTCGTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043028.1\|WP_151623433.1\|1971660_1972365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043028.1\|WP_151623428.1\|1967218_1967911_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377360
NZ_CP043028.1\|WP_151623447.1\|1989688_1991482_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP043028.1\|WP_151623436.1\|1974677_1975925_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|259851
NZ_CP043028.1\|WP_151623441.1\|1981774_1982740_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316372
NZ_CP043028.1\|WP_151623440.1\|1980703_1981753_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225031
NZ_CP043028.1\|WP_151623429.1\|1967911_1969414_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NZ_CP043028.1\|WP_151623446.1\|1988573_1989671_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|366154
NZ_CP043028.1\|WP_151623444.1\|1985386_1987069_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|100107
NZ_CP043028.1\|WP_151623442.1\|1982717_1983887_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379214
NZ_CP043028.1\|WP_151623430.1\|1969573_1970713_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP043028.1\|WP_167511342.1\|1977669_1979688_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227897
NZ_CP043028.1\|WP_151623443.1\|1983876_1985349_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379549
NZ_CP043028.1\|WP_151623437.1\|1976039_1977458_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379062
NZ_CP043028.1\|WP_167511343.1\|1987053_1988559_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|372681
NZ_CP043028.1\|WP_151623435.1\|1974339_1974696_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043028.1\|WP_151623432.1\|1971028_1971658_-\|DUF624-domain-containing-protein	unknown	unknown	gnl\|CDD\|377412
NZ_CP043028.1\|WP_151623431.1\|1970728_1970980_-\|metal-binding-protein	unknown	unknown	gnl\|CDD\|377215
NZ_CP043028.1\|WP_151623439.1\|1979702_1980707_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371500
NZ_CP043028.1\|WP_151623434.1\|1972550_1974134_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|237608

Protein	Function_ID	Function_description	E-value
NZ_CP043028.1\|WP_151623429.1\|1967911_1969414_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_CP043028.1\|WP_151623428.1\|1967218_1967911_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377360	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This is a family of putative SAM-dependent methyltransferases.	3.87855e-53
NZ_CP043028.1\|WP_151623447.1\|1989688_1991482_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.70596e-21
NZ_CP043028.1\|WP_151623436.1\|1974677_1975925_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|259851	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins. This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain.	3.69605e-10
NZ_CP043028.1\|WP_151623441.1\|1981774_1982740_-\|hypothetical-protein	gnl\|CDD\|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	0.00628177
NZ_CP043028.1\|WP_151623440.1\|1980703_1981753_-\|hypothetical-protein	gnl\|CDD\|225031	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown].	3.06899e-24
NZ_CP043028.1\|WP_151623444.1\|1985386_1987069_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|100107	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).	1.92393e-10
NZ_CP043028.1\|WP_151623442.1\|1982717_1983887_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379214	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions.	3.82977e-06
NZ_CP043028.1\|WP_151623430.1\|1969573_1970713_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	5.89863e-68
NZ_CP043028.1\|WP_151623439.1\|1979702_1980707_-\|hypothetical-protein	gnl\|CDD\|371500	pfam11380, Stealth_CR2, Stealth protein CR2, conserved region 2. Stealth_CR2 is the second of several highly conserved regions on stealth proteins in metazoa and bacteria. There are up to four CR regions on all member proteins. CR2 carries a well-conserved NDD sequence-motif. The domain is found in tandem with CR1, CR3 and CR4 on both potential metazoan hosts and pathogenic eubacterial species that are capsular polysaccharide phosphotransferases. The CR domains appear on eukaryotic proteins such as GNPTAB, N-acetylglucosamine-1-phosphotransferase subunits alpha/beta. Horizontal gene-transfer seems to have occurred between host and bacteria of these sequence-regions in order for the bacteria to evade detection by the host innate immune system.	8.78188e-48
NZ_CP043028.1\|WP_151623443.1\|1983876_1985349_-\|hypothetical-protein	gnl\|CDD\|379549	pfam14307, Glyco_tran_WbsX, Glycosyltransferase WbsX. Members of this family are found in within O-antigen biosynthesis clusters in Gram negative bacteria, where they are predicted to function as glycosyltransferases.	6.00294e-149
NZ_CP043028.1\|WP_151623437.1\|1976039_1977458_-\|AAA-family-ATPase	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	8.67288e-07
NZ_CP043028.1\|WP_167511343.1\|1987053_1988559_-\|glycosyltransferase	gnl\|CDD\|372681	pfam13704, Glyco_tranf_2_4, Glycosyl transferase family 2. Members of this family of prokaryotic proteins include putative glucosyltransferases,.	2.52321e-13
NZ_CP043028.1\|WP_151623431.1\|1970728_1970980_-\|metal-binding-protein	gnl\|CDD\|377215	pfam04071, zf-like, Cysteine-rich small domain. Probable metal-binding domain.	6.66585e-28
NZ_CP043028.1\|WP_151623434.1\|1972550_1974134_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|237608	PRK14095, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP043028.1\|WP_151623432.1\|1971028_1971658_-\|DUF624-domain-containing-protein	gnl\|CDD\|377412	pfam04854, DUF624, Protein of unknown function, DUF624. This family includes several uncharacterized bacterial proteins.	2.05619e-08
NZ_CP043028.1\|WP_151623446.1\|1988573_1989671_-\|glycosyltransferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	2.30736e-34
NZ_CP043028.1\|WP_167511342.1\|1977669_1979688_-\|hypothetical-protein	gnl\|CDD\|227897	COG5610, COG5610, Predicted hydrolase (HAD superfamily) [General function prediction only].	1.53671e-19

>NZ_CP043028.1|WP_151623437.1|1976039_1977458_-|AAA-family-ATPase
MIIGRKQEIDILNSTIQDDYSHFVAIYGRRRIGKTFLIREVFNYRFTFQHSGLSEGGLKEQLFAFEASIRDAGGNPTKKRKNWLEAFEDLKDVIRSSSEKKKIIFIDELSWMDTQNSDLMVALENFWNGWASARRDVVLIVCASATSWMLSKVVHNKGGLYNRLTEQIHLESFSLAECEEYVKSKGMAFTRNQILHYYMVFGGIPFYWGFLEKGLSIQQNIDKILFAKNAPLADEFKYLYASIFKNPENYIKIISTLATKKVGMTREEIIGNSGLANSGELTTRLEELESCGFIRKYDAYGMKKKNAVYQLIDNYTLFYYQFLFDKPTDEHFWTNLINTPLINTWQGLAFERVCLEHVNQMKQKLGISGVQTEVNSWYCKADEAKGIKGSQIDLLIVRKDQVINLCEMKYSNSDYTVSADVDSDIRGKIQDFQKATKTKYAIYPTLVTTYGMVNNSYSGNIQAVITLDDLFI
>NZ_CP043028.1|WP_151623436.1|1974677_1975925_-|helix-turn-helix-domain-containing-protein
MSNERNAGRKPKISDEQFDAIISRHELGESIASLAAEYGVSRQALHKRIKESNQQPLKIDWCVNDENVSSITVDLQHRAVVLANYAVQISKLPFGFNMNPTWQDMIKMLEEKYLIQVGVDEPGVYLFTDGEKTFNPSVIPELQIKSNDELPEFAFTKKDILLTRTDTDGFQMKALTYGRSLFVKSQAIMASIAMRDWAVEIIASDIANQLGIPCVQQKHCIFAYGGRKFDAVYSSNFELDGYTFLSFESLLEEKHISTKDDFFLKMNSIEKLKWCAKQLSEMGNIPYEESEKYMLNLSVLDCLVGNVDRHTRNFGLFFNSINGEYQIPLIFDNGMGLFEHDYYRDNYHTFEEAMNNVYVSPYGEDPFDFLEILNREYKVKEIYKGVNEIKYIDILNTPFAKEYERRMSELWQKLD
>NZ_CP043028.1|WP_151623435.1|1974339_1974696_-|hypothetical-protein
MAEVRLINNLKGVLYFLDTPLMDFEIKDRELIKATDLNNGKLYPWELAKLGISYGSFVKFFQRRTMREGCMFYQEHLRALGMDKMDFDLYIKKNNGNNHLDNYWVKFEDFGAKKFVEL
>NZ_CP043028.1|WP_151623434.1|1972550_1974134_-|glucose-6-phosphate-isomerase
MVAWKNFDQLEAYGKLQGLKNQVELKSVMAGANGAKRVAEYSVPMSNGMSYNFAAKQVDDTVLDALQELADEAQLTDKYSALFNGEVINTGEKRLVLHQLTRGQLGSDVMADGVNKREFYVKQQERIAEFANKVHAGEIVNEKGEKFTTAVQIGIGGSDLGPRAMYLALENWAKVNNTFKMEARFISNVDPDDAASVLAGVDVAHSIFILVSKSGTTLETLTNESFVKDALAKAGLDASKHMIAVTSETSPLAKSADYLDAFFMDDYIGGRYSSTSSVGGAVLSLAFGPDVFARFLNGAADEDKLSRNVDVRKNPAMLDALIGVYERNVLGFETTAVLPYSQGLSRFPAHLQQLDMESNGKSVNRFGEPVDYVTGPVIFGEPGTNGQHSFYQLLHQGTNIIPLQFVGFKKSQMATDVVIEDSTSQQKLCANVAAQIMAFACGKDDDNRNKYFEGNRPSSIIVGEQLTPETLGALLAHFENKVMFQGFVWNLNSFDQEGVQLGKTLAKKVLSGDTSDALAAYAKLLAI
>NZ_CP043028.1|WP_151623433.1|1971660_1972365_-|hypothetical-protein
MMEKYIDNEQESVNKTFKGEKKKLSQMTFGQKLEYIFEYYKVHMIIALIVLIVLGWCIHHAMTYVQYKFYGMVINSDQYSTEVEAQMHDILGMEKHDGFSITADLYTDDTANMGGYGNKLDIYVMAGQMDFAFADEEGVEHMVQLGAIRDIKDTAPADILKLWQDQGRLYNMEVTDDDGVTGSYDVAVDISDSPIHEYFGLDENTKYLMVADLSGSEEYLERFYELLYKLEIGE
>NZ_CP043028.1|WP_151623432.1|1971028_1971658_-|DUF624-domain-containing-protein
MGRFFNSRFFEGITKVTDILIIGFYFMICSIPLVTIGASATALYYATNKCIFKGRGYTTAFFHSFKENFKQSTLSWLIFIIIFGILSGDIYITRTMVSPDSPFAAASIFFMVLFVLTIVWAIYHFAYIARFSNGFKASFKISAMFMILNFGWSIVLLGEVVVLLLLIYRFPIFLLFSPGMISCAIHPVLERVFRKYMSPEDIKKDQEQY
>NZ_CP043028.1|WP_151623431.1|1970728_1970980_-|metal-binding-protein
MDNYKFFQNKECEYFPCHKTAHPEDFNCLFCYCPLYHLEDKCGGNFTYTESGVKSCVNCLRPHVRGNYDDIIKAIKESRTKDN
>NZ_CP043028.1|WP_151623430.1|1969573_1970713_-|cation-diffusion-facilitator-family-transporter
MKNRNMNVADAVENRDKVIIQTSVIGIIANLFLAGFKALVGIMSNSIAIILDAVNNLSDALSSVITIVGTKLAGKMPDKKHPLGHGRVEYLSALLVAAIIIYAGLTSLNESILKIIHPEKAEYTSLTLIVLVVAIIVKFFLGRFVKSTGEKVNSSALIASGADASFDAIISISVLASAIIYIVFGISLEAWVGIAISIYIVKAGWEMMSDTLDDILGRRPDRELSIGIKRLICEEPEVRGAYDLVLNNYGPNKYLGSVHVELPDVMTVEDVDNLTRRIQQKVFQETGVVLTGVGVYSYNTKNDEAAQIRNRVLELVKAHEWALQLHGFYVDTQKKEMRFDVVFSFDISHVEGTEIIYREVLNEYPEYTIQIAADVDITD
>NZ_CP043028.1|WP_151623429.1|1967911_1969414_-|nicotinate-phosphoribosyltransferase
MKQTQDKARNLTMMMDEYELTMANAYFNDPTIDPKTRVSFDVFYRVNPDGGGFAIFAGLQQIKDYLLNMHFTDEDIEYLRSVGHFTEDFLEYLKNFKFTGDVDAFPEGTIMYPNEPIITVTAPIIEAQLVETEILAQVNHQSLIATKASRIVRAAQGRAVSDFGARRAHNNDAAIYGARAAYIGGAAGTATVSAGQYFNIPIGGTMAHSYVMYFTSDDNDYRTSELTAFRSFAKSYPNNCILLVDTYNVLKSGVPNAIKVFQEMKDAGIQSKSFGIRIDSGDLAYLTKKARKMLDDAGFTEAKIIVSNSLDEYTITSILQQGGQVNSFGVGERLITAKSEPVFGAVYKLCAVTDAKTGETIPKIKISETVEKITNPGLKDVYRIKDENGRAVADMLAIKGEKVDMSVEGGYRFVDPEQPWKSTHIFENCTAELLQQPLIRDGKAATPDEDMQTIRARVQEQLTTSVWLEEQRFENPHKHYLDMTPDYYNMKMELLRKEDK
>NZ_CP043028.1|WP_151623428.1|1967218_1967911_-|class-I-SAM-dependent-methyltransferase
MISESKINEYNTKLAKLELALESTDQGLCLTDGKLQIMADFREMLPRLKQSNLQREMLVKAARIKGQEMPQTLVDATAGFGEDSLILAAAGFEVRLYEFDEIIAVLLQDCLDRAKDIPELKDAVSRMTLCCQDSVEAMKKLDFKPDIVLLDPMFPARQKSALIKKKFQLIQRLESPCSTEEELLDAAIAADPKRIVIKRPLKGPYLAERKPSYSLEGKAIRYDCFVFARK
>NZ_CP043028.1|WP_167511342.1|1977669_1979688_-|hypothetical-protein
MLDDIKNKTIALYGLGTETERLISRWGSGPKIVGLLDGFKESGEAFGYPIISLQQAIDLSVEAIIVVARPGSCKVIAKRIKEVCVNNGILVYDIRGNDLLTETKAVYDFKGFNVYTKERLYKEIDQADVISFDLFDTLFARKTLYYTDVFEMVQAKLEEQGVFIPDFLNLRLAAEKELSSDEAPKIKQIYNWVINQQKDIKVTADELADLEWNLDKSVMYPRDGMSQLIGKIASLGKTIIVTTDTYYSLEQIEEVLLLMGFSYIDKVYVSSEFNVAKASGLFEIVKKDYHNLKILHIGDDEYVDAEKATEYGINHYRLYNAKELFDNVGELSLEKNVKTFSDRVKVGLALSRIFSDPFLFENKDLRLSIKDAKDIGYFICGPMVLDFALWFKDKLKEIGAENVLLCARDGYLINEILHRIDSKSLSVYFLTSRTSAIRAGIKNEDDIAYVDSMKFFGSQEESLLARFGISLNEGEDRNAAIINKAKFQRLNYQKYISKLNLSDGTTAVFDFVAKGTTQLFLQKIMKQQLKGLYFLQLEPEFMADKGVEIESFYTEEERDKSVIFDNYYILETILTSPMPSVDEFDECGNPVYAKETRSPENIKCVQKMQQGIIEYVEDYLEIVPKELRIINKQLDEGLLSLIGKLQIDDEDFKRLVVEDTFFGRMTDIKDVL
>NZ_CP043028.1|WP_151623439.1|1979702_1980707_-|hypothetical-protein
MNKPIDIVIPWVDEKDKKWQSEKNKYAKQDGIEFSNVRFQSWDNLHLWFRAIEKCMPWVNKVFLITCGQTPEFLNTENNKIRLVRHDEYIPSEYLPTFNSNTIEMNIHRIEDLSENFILFSDDVFPLKEIDEEYYFKNDLVCDEAVENIITTTSFGAVSRATRYAQVNNMFIINKYFHKREVQEKNWEKWYCEDYGDRLERTKACAYWYDFPGFYDPHMANAMKKSTLKKLWGLEPEALDAGSKDRFRGSADVTQYLIRYWQLCEGNFMPRRTQGKVFFPTIETYNEVIDAINNRLYPMISFNENCTPEEFEIIKRDINATLEKKFPLKSAFEK
>NZ_CP043028.1|WP_151623440.1|1980703_1981753_-|hypothetical-protein
MKELVIDKQDKILIIAPHPDDESIGCGGLLLKYGNQCDVVCLTDGRQGQGDVTPCRLAKIRKYEFVEAMKNVGLKNYKMLNIEDGTLCAHLFCLNDIDISIYTKIFVTGRSDNHPDHTASLVCLMNAIEMQNIEQKEIYEYEVHHSVSGATHYLDITDVIEKKSILIGIYKSQIKNFPFDKKILEMNLKNGNEEYYFENYKRINIKTVDANICIERELEKSREFYWIYTRWMNLIQNGRCIKEYFKEDNKLEIIIYGYKEIGKLLEREMINEGCTINYVIDNSKKVKDDYPQKEIISAEESTKYKCFDNAVIVTATFYYKDIEETLEKLGYTNIHSLKRILEELESGEI
>NZ_CP043028.1|WP_151623441.1|1981774_1982740_-|hypothetical-protein
MKRTQRHKHILNDLYLYIEELKQKAIKEKKEFIIWGYAKGGAFIKWLLEAEDNNANVAYIIDDRCDLVIGGSPSMYRSTLFNYIDNKKYIVLSTILDFSLVQKTLDMYGYKKNDNLYDIRHEIGVSYIDFLQINNMEIDFGNTTANDRPDIYVGTDNSISTPFDTISVDEVFQTIKNLDKNVNLFDYGCGKGQILFDAYINGIDNLAGIELVEEIVIKARKNMEILGIPAVIYNEDATIFSDIDNYNVFFLNNPFVGNVFKSVISQIEDSVTRCPRNTFIVYLNPRCHTEIIKNGVFKMYEQKYIACGDPIMNIYVANGKS
>NZ_CP043028.1|WP_151623442.1|1982717_1983887_-|GNAT-family-N-acetyltransferase
MLFNIGEKVMREIVFDSDNLIYNRLDLIYIDDVNDTYIIHEGIKYKFQYHIDGAVAEINVWGKYFPQSVFEKFIETIFDAEKNISSIDVRSALNDYHNQLILHGDMMIRLPSSSDELLNRLGSKGKHTLKRKRRILKECFKEFCIKNVDKIEPSDVETYFLWKKCTHGTEYNLSPDEYLKKYHVTNAIKLLGDNELVAILFYCKYKDVVYFENFSYNTEYKKCSPGFLVYSYFLEEMTNDGVKYVFLGKSGLDYKRRFYAEERNCYSGKIYRDSFFDSVKTFFDTNRVKNIVIYGFGVCGKEFLQANKHIGVNIICAIDRALNGDGSVKVISPDDVWPNVDAIIVTMNSYNKDIENILDKKGTKYFYWIDIKQKVLEKMGEKYEENTTS
>NZ_CP043028.1|WP_151623443.1|1983876_1985349_-|hypothetical-protein
MLKVISMYLPQFHEIKENNEWWGEGYTEWTAVKGAKQYFDGHYQPHVPLNKNYYNLLDKKTMSWQAELMKKYNVYGQSFYHYYFEDGRKILEKPAENLLQWKDIDMPFCFTWANESWIRTWSAINGVCWNSNIEERPKGDGILLKQNYGEKKEWIDHFNYLLDFFKDERYIKIDNKPLFIVYKPLDIYCIDEMSLVWEKLAVENGFSGIYFVGVNASFKAASAILLLESNNVGLYLDKITQYEQVCEQIVTSAAIAEEKVLFCGTPGYDDSPRRGKRGSIFKDSTPELFYEQMKNLSYISKLKNNEFLFVNAWNEWGEGMYLEPDEIYEYQYLDALKRGVIDGNNLDNEGIEKCKRIVEKGKSIRIKKQDDRIKQLKFYEGIYEKLLKGYEKNHTFATILMDLNVKSAAIYGLGNIGRHIIAELKGTEIEIAYGIDKDATEINTGFFVYTIDDVLPEVDIVIVTTPKADFEKLKKKKCKYMTIEELMNVV
>NZ_CP043028.1|WP_151623444.1|1985386_1987069_-|methyltransferase-domain-containing-protein
MGKMVNSVGGVLIDYEFYPGEDLYSDGSIENTIYDAIVMNEESKILHSSNEWAVLYHLSDIRENIIEWCNIDRNSKVLEIGSGCGAVTSVLSNKAKSVDCVELSQRRTLINAERNKNKNNIKIYLGNFQDVEKKLGQYDVITLIGVLEYAGLYIHGKHPYTNLLRIVKKHLSNKGKIIIAIENKIGLKYLNGAPEDHMGQPYVGINDYVGCHDVRTFSGNELREMLKEVGLLKCNFYYPVPDYKLPMKIYSQDILPKPGDIRTYKTNYSKTRIYNFMEDVANDQISSDGMFEYMSNSFLIIAGKEFEEDVLFAKYNRERKCEYRISTKITNTEDGVRVVKSALTEEAFSHIKRIKENEENWVPANNMLKKGCGFIKEGKYYSGYIKGKTLVEILYKYRNDSDEFIKSVDELINKYYQPDKDNLIQFEKTTSFTEVFGDIYVENSMSYRITNIDLLFSNIIIDDTGNAYAIDFEWVFDFPIPYRFVSWRACKELYCVYMAYYKNFLSIDEYYAKLGFKDFEVIAFKQMEKNFGDYVCGFNRNEEYLHNYVKPFITPKMIIG
>NZ_CP043028.1|WP_167511343.1|1987053_1988559_-|glycosyltransferase
MAGGISSIGEKNLSTLLLRFLQCNRSDIIYANDEVEFIKDKYLKTRVKNLSKAQPANAVVYLNKMVGDKTELNHIIELLKENNIILTIDNSVEASGYCLSELDKDIKVNFYGPCFSFCYRKVPDEFKVLAIIHVYNEEDVIEQTTMYLLSQGIDVYLIDNWSTDGTYEIIKKLVNNFPQRVFGRRYPENERKDYYDWYNQLMLSENISKKLNYNWYIHYDADEYRVAPWKGVTLKEAIYYIDSLGYNLIENTVIDFKVTKRDDSSIFMKDTWFDFGHRKAHFEQTKTWKKCENIDLKQSGGHLAKIDDPKVFPLKILNRHYPLRSYEHANKKIFNDRKPRYMVENKTRGWHGHYNNILNGNDIIVPQQGLIKWTEKTFDELYIQLFTGCGIEVETENLRDSIYKLQEKIDKGCLVSIYGAGKIGKLIYDELSSEYTIEHWVDKNYKRIQPMFGRCIESPSEIINSESRVIIAIEDESIAKSVEENLINMGVDYRRMLWEKW
>NZ_CP043028.1|WP_151623446.1|1988573_1989671_-|glycosyltransferase
MPRVSIVLPTYNGSKFIGDSIKSIIAQSFKDWELIIVNDSSTDETGKIIEIFANKDNRIHIVNNETNLKIPISLNKGFRIATGEYLTWTSDDNIYHIDALEKMYTFLENNKTEMMVCAKMKFISETGALQGESRLYQNENMLVNNAVGACFLYRREILKEVGEYDKEMFLVEDYDYWLRVYFRYGSIGYINDVLYDYRMHSNSLSKTRYYDVQKSNAQMKLKYLDKILELLGDKPEKLCRIYFHILHFSEMSEENKRILKEKIDVLKMVEEKEFTEKSVVYGAGKIGKLYYESHSQNVQFFADRDINKVDNYYCGIKVISLEKMVKLSDEYNIVIAVGIEKVYEVLETLKEYKIKKCIVYTDAWW
>NZ_CP043028.1|WP_151623447.1|1989688_1991482_-|methyltransferase-domain-containing-protein
MGYVLFGAGVCGQEAIKFLGKENIECFLDNNPSCNDIEGIPVYRFDDAKNNYYGRQIVISVKEKYFDVIKDQLLNNGFDYTSYEKLRFEIIREKLLNRPDYISIYKKTINWIKNNSIFNQGIRVTSDCLVSYPEVTGYYIPTLLRWGYRELAISYANWLISIQKEDGSWYDAYDKNPYIFDTAQILKGLIAIREIIPSVDRNIIRGCEWILSCMTNEGRLVTPSKEAWGDDKNICDEVIHIYCISPIIEAGRVLNRPEFIEKANEIWGFYRKNYYDKIMNFSLLSHFYAYLMEALFDIGEIDMCEQAMNSISKFQKESGAIPALNNVDWVCSTGVFQLALVWFKLGKIENGDKAFEYACKLQNESGGWFGSYLSENNLDEKNSYFPSREISWACKYFLDALYYKNFAEFNMDSDTFIDEISKNDDRYKNVLEAVKSIGKGKAKVLDIGCGKGRYLKRIIEDLPLNNYYAVDISPYVMKYINDERIECKQGTLTNIQFPDDYFDCVYTCEALEHSIDIDSAIREMSRVTRAGGLIVVVDKNKKKLGQLDIGEWEQWFDINELRSIMEKYCSEVKVNNDISYENKKADGLFVAWIGTVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NC_001738	Streptomyces clavuligerus ATCC 27064 plasmid pSCL, complete sequence	6114-6140	4	0.852
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	959035-959061	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	1536329-1536355	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	1354695-1354721	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	1159278-1159304	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	1245473-1245499	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	957374-957400	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	628769-628795	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	1121769-1121795	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	645409-645435	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	566775-566801	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NZ_CP021819	Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence	465911-465937	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	523265-523291	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	1063787-1063813	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	1027902-1027928	5	0.815
NZ_CP043028_1	1.7\|1246271\|27\|NZ_CP043028\|CRISPRCasFinder,CRT	1246271-1246297	27	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	211781-211807	5	0.815

1. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NC_001738 (Streptomyces clavuligerus ATCC 27064 plasmid pSCL, complete sequence) position: , mismatch: 4, identity: 0.852

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ccggaagaacagcaagggcgagccgat	Protospacer
*.*************.******** .*

2. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

3. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

4. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

5. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

6. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

7. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

8. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

9. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

10. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

11. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

12. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

13. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

14. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

15. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

16. spacer 1.7|1246271|27|NZ_CP043028|CRISPRCasFinder,CRT matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.815

ctggaagaacagcaaaggcgagcctgt	CRISPR spacer
ctggacgaactgcaaaggcgagctttg	Protospacer
***** **** ************.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

621708 : 698036

Catovirus(33.33%)

integrase,transposase,tRNA

attL 693505:693527|attR 697688:697710

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151622368.1\|621708_622911_+\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	1.6e-82	43.0
WP_151622369.1\|623000_623624_+\|integrase	tyrosine-type recombinase/integrase	A0A1W6JQD3	Staphylococcus_phage	8.0e-06	26.4
WP_151622370.1\|623818_625090_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_151622371.1\|625086_625770_-	transglycosylase SLT domain-containing protein	A0A1P8CWQ1	Bacillus_phage	1.6e-31	57.6
WP_151622372.1\|626339_626966_+	RNase H	A0A2H4JH24	uncultured_Caudovirales_phage	1.0e-29	37.4
WP_151622373.1\|626979_628017_+	peptidase M42	NA	NA	NA	NA
WP_151622374.1\|628169_629030_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_151625634.1\|629238_629937_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_151625635.1\|630101_631415_-	MATE family efflux transporter	NA	NA	NA	NA
WP_151622375.1\|631464_631728_-	hypothetical protein	NA	NA	NA	NA
WP_151622376.1\|631711_632536_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_151622377.1\|632513_633506_-	6-phosphofructokinase	NA	NA	NA	NA
WP_151622378.1\|633633_637116_-	DNA polymerase III subunit alpha	A0A0K1Y8F0	Streptomyces_phage	1.4e-221	39.4
WP_151622379.1\|637183_638803_-	Na/Pi symporter	NA	NA	NA	NA
WP_151622380.1\|638978_640211_-	GTPase HflX	NA	NA	NA	NA
WP_151622381.1\|640462_641032_+	energy-coupled thiamine transporter ThiT	NA	NA	NA	NA
WP_151622382.1\|641096_642500_-	AMP-binding protein	A0A1V0SBX8	Catovirus	5.2e-29	24.6
WP_151622383.1\|642517_642751_-	acyl carrier protein	NA	NA	NA	NA
WP_151622384.1\|642768_643932_-	acyltransferase family protein	NA	NA	NA	NA
WP_151622385.1\|644023_645121_-	HD domain-containing protein	NA	NA	NA	NA
WP_151622386.1\|645249_646194_-	ABC transporter permease	NA	NA	NA	NA
WP_151622387.1\|646197_647346_-	ABC transporter permease	NA	NA	NA	NA
WP_151622388.1\|647345_648884_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.1e-11	28.6
WP_151622389.1\|649021_650200_-	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_151625637.1\|650294_650750_-	cytidine deaminase	NA	NA	NA	NA
WP_151622390.1\|650763_652161_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_167511264.1\|652209_652350_-	hypothetical protein	NA	NA	NA	NA
WP_151622391.1\|652371_653772_-	DUF342 domain-containing protein	NA	NA	NA	NA
WP_151622392.1\|653950_654628_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_151622393.1\|654847_657496_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	5.4e-168	41.8
WP_151622394.1\|658128_660345_+	hypothetical protein	NA	NA	NA	NA
WP_151622395.1\|660357_662862_+	hypothetical protein	NA	NA	NA	NA
WP_151622396.1\|662886_663579_+	hypothetical protein	NA	NA	NA	NA
WP_151622397.1\|663568_664366_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_151622398.1\|664367_665249_-	hypothetical protein	NA	NA	NA	NA
WP_151622399.1\|665387_666353_-	glycosyltransferase	NA	NA	NA	NA
WP_151622400.1\|666352_667237_-	glycosyltransferase	NA	NA	NA	NA
WP_151622401.1\|667306_668728_-	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA	NA	NA	NA
WP_151625639.1\|668740_669910_-	UDPGP type 1 family protein	NA	NA	NA	NA
WP_151622402.1\|670150_670801_-	NeuD/PglB/VioB family sugar acetyltransferase	NA	NA	NA	NA
WP_151622403.1\|670802_671909_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A2P1ELT3	Moumouvirus	1.8e-24	27.9
WP_167511265.1\|671918_673592_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	2.5e-09	28.2
WP_151622405.1\|673709_674675_-	glycosyltransferase	NA	NA	NA	NA
WP_151622406.1\|674667_677556_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.5e-09	28.0
WP_167511266.1\|677564_678512_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.6e-13	37.9
WP_151622408.1\|678518_679265_-	glycosyl transferase	A0A1V0SBR5	Catovirus	3.2e-09	34.6
WP_167511267.1\|679313_680252_+	glycosyltransferase	NA	NA	NA	NA
WP_151622410.1\|680292_681342_-	glycosyltransferase	A0A1V0SAH6	Catovirus	8.2e-11	39.1
WP_151622411.1\|681345_683460_-	glycosyltransferase	A0A1V0SAH6	Catovirus	8.7e-12	35.4
WP_151622412.1\|683465_684596_-	glycosyltransferase	NA	NA	NA	NA
WP_151622413.1\|684627_685572_-	hypothetical protein	NA	NA	NA	NA
WP_151622414.1\|685590_686301_-	polysaccharide biosynthesis tyrosine autokinase	A0A1X9I5D6	Streptococcus_phage	1.3e-15	32.4
WP_151622415.1\|686309_687023_-	hypothetical protein	NA	NA	NA	NA
WP_151622416.1\|687240_688326_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	8.0e-78	46.0
WP_151622417.1\|691318_693061_+	hypothetical protein	NA	NA	NA	NA
693505:693527	attL	NA	NA	NA	NA
WP_151622418.1\|693641_695621_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_151622419.1\|695607_696591_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_151622420.1\|696587_697622_+\|integrase	tyrosine-type recombinase/integrase	U5Q1D8	Bacillus_phage	4.0e-10	27.1
WP_167511268.1\|697628_698036_-\|transposase	transposase	NA	NA	NA	NA
697688:697710	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1073569 : 1143694

uncultured_Caudovirales_phage(18.18%)

integrase,transposase,protease

attL 1083400:1083416|attR 1124685:1124701

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151622744.1\|1073569_1074814_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	4.7e-50	49.7
WP_151622745.1\|1074932_1075382_-	hypothetical protein	NA	NA	NA	NA
WP_167511289.1\|1075731_1075896_-	hypothetical protein	NA	NA	NA	NA
WP_167511290.1\|1075906_1076722_-	hypothetical protein	NA	NA	NA	NA
WP_151622747.1\|1077111_1077588_+	helix-turn-helix domain-containing protein	A0A1B2LRS2	Wolbachia_phage	5.0e-08	35.7
WP_151622748.1\|1078042_1078663_-	hypothetical protein	NA	NA	NA	NA
WP_151622749.1\|1078911_1080090_+	hypothetical protein	A0A2H4JEI4	uncultured_Caudovirales_phage	3.5e-10	41.4
WP_151622750.1\|1080758_1082114_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1083400:1083416	attL	NA	NA	NA	NA
WP_151622751.1\|1088958_1089261_+	Dabb family protein	NA	NA	NA	NA
WP_151622752.1\|1089326_1090154_+	hypothetical protein	NA	NA	NA	NA
WP_167511291.1\|1090311_1090737_+	winged helix DNA-binding protein	NA	NA	NA	NA
WP_151622754.1\|1090746_1092096_+	MATE family efflux transporter	NA	NA	NA	NA
WP_167511292.1\|1092263_1093595_+	MFS transporter	NA	NA	NA	NA
WP_151622756.1\|1093604_1094756_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_151622757.1\|1094885_1095848_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_167511293.1\|1095855_1096326_+	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_151622759.1\|1096325_1096751_+	hypothetical protein	NA	NA	NA	NA
WP_151622760.1\|1097241_1098531_+	AAA family ATPase	NA	NA	NA	NA
WP_151622761.1\|1098621_1099509_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_151622762.1\|1099658_1100180_+	flavodoxin	NA	NA	NA	NA
WP_151622763.1\|1100204_1101044_+	aldo/keto reductase	A0A1V0SKP9	Klosneuvirus	7.9e-33	31.0
WP_151622764.1\|1101226_1101748_+	DUF4256 family protein	NA	NA	NA	NA
WP_151622765.1\|1101965_1102736_+	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_151622766.1\|1102847_1103288_+	transcriptional regulator	NA	NA	NA	NA
WP_167511294.1\|1103784_1104936_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_151622768.1\|1104932_1105715_+	protein-ADP-ribose hydrolase	A0A2K9L8X2	Tupanvirus	1.1e-36	38.0
WP_151622769.1\|1105735_1106752_+	hypothetical protein	NA	NA	NA	NA
WP_013282512.1\|1106817_1107255_+	radical SAM mobile pair system MarR family transcriptional regulator	NA	NA	NA	NA
WP_151622770.1\|1107251_1107950_+	radical SAM mobile pair protein A	NA	NA	NA	NA
WP_151622771.1\|1107925_1108849_+	radical SAM mobile pair protein B	NA	NA	NA	NA
WP_151622772.1\|1109741_1111076_+	MFS transporter	NA	NA	NA	NA
WP_151622773.1\|1111002_1112109_+	helix-turn-helix domain-containing protein	A0A2I6QQS2	Streptococcus_phage	4.1e-05	36.2
WP_151622774.1\|1112200_1113229_+\|integrase	tyrosine-type recombinase/integrase	A0A2R2ZHE2	Clostridioides_phage	4.5e-14	28.0
WP_151622775.1\|1113233_1114076_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_151622776.1\|1114255_1114990_-	hypothetical protein	NA	NA	NA	NA
WP_151622777.1\|1115217_1116453_-	hypothetical protein	NA	NA	NA	NA
WP_151622778.1\|1116820_1117432_-	hypothetical protein	NA	NA	NA	NA
WP_151622779.1\|1117581_1118505_+	hypothetical protein	NA	NA	NA	NA
WP_151622780.1\|1118491_1120330_-	beta-hexosaminidase	NA	NA	NA	NA
WP_151622781.1\|1120515_1122747_+	EAL domain-containing protein	NA	NA	NA	NA
WP_151622782.1\|1122889_1124464_-\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	6.4e-44	28.2
WP_151622783.1\|1124683_1125292_+	DUF3793 family protein	NA	NA	NA	NA
1124685:1124701	attR	NA	NA	NA	NA
WP_151622784.1\|1125327_1125759_+	flavodoxin	NA	NA	NA	NA
WP_151622785.1\|1126008_1127133_+	DUF362 domain-containing protein	NA	NA	NA	NA
WP_151622786.1\|1127137_1127881_+	nickel pincer cofactor biosynthesis protein LarB	A0A288TYA6	Enterococcus_phage	4.0e-20	43.4
WP_151622787.1\|1127899_1129087_+	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA
WP_151622782.1\|1129196_1130771_+\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	6.4e-44	28.2
WP_151622788.1\|1130905_1131400_-	transporter	NA	NA	NA	NA
WP_151622789.1\|1131475_1132120_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_151622790.1\|1132072_1132636_-	ECF transporter S component	NA	NA	NA	NA
WP_151622791.1\|1132638_1133637_-	nucleoside hydrolase	NA	NA	NA	NA
WP_151622792.1\|1133790_1134198_-	ATP-binding protein	NA	NA	NA	NA
WP_151622793.1\|1134218_1135892_-	M3 family oligoendopeptidase	NA	NA	NA	NA
WP_151622794.1\|1136821_1137643_+	AAA family ATPase	NA	NA	NA	NA
WP_151622795.1\|1137645_1138344_+	hypothetical protein	NA	NA	NA	NA
WP_151622796.1\|1139201_1140632_+	RepB family plasmid replication initiator protein	NA	NA	NA	NA
WP_151622797.1\|1140929_1142951_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.1e-09	44.3
WP_151622798.1\|1142962_1143694_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

1235858 : 1241941

Staphylococcus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151622874.1\|1235858_1236323_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.2e-40	55.0
WP_151622875.1\|1236340_1237537_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.0e-102	48.0
WP_151622876.1\|1237665_1237965_+\|transposase	transposase	NA	NA	NA	NA
WP_151622877.1\|1237973_1238867_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.7e-39	35.8
WP_151622878.1\|1238863_1239466_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.5e-37	43.8
WP_151622879.1\|1239465_1240563_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.9e-50	38.0
WP_151622880.1\|1240999_1241941_+	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.5e-16	26.6

DBSCAN-SWA_4

1930269 : 1939305

Ostreococcus_tauri_virus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151625737.1\|1930269_1932114_-\|protease	ATP-dependent zinc metalloprotease FtsH	H8ZJI5	Ostreococcus_tauri_virus	5.5e-111	42.7
WP_151623404.1\|1932162_1932687_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	3.7e-12	31.9
WP_151623405.1\|1932679_1934329_-\|tRNA	tRNA lysidine(34) synthetase TilS	A0A1V0SD04	Indivirus	1.9e-06	21.9
WP_090155384.1\|1934338_1934578_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_028234604.1\|1934743_1935016_-	HU family DNA-binding protein	A0A1P8CWT5	Bacillus_phage	2.9e-21	60.7
WP_167511339.1\|1935277_1936468_-	hypothetical protein	NA	NA	NA	NA
WP_151623407.1\|1936538_1937870_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	4.1e-100	44.8
WP_151623408.1\|1937865_1939305_-\|tRNA	proline--tRNA ligase	A0A2K9L0T2	Tupanvirus	4.7e-110	44.5

DBSCAN-SWA_5

2042883 : 2111072

Bacillus_phage(50.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151623489.1\|2042883_2043456_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_028235339.1\|2043464_2043725_-	septation regulator SpoVG	NA	NA	NA	NA
WP_151623490.1\|2043729_2044863_-	glucose-1-phosphate adenylyltransferase subunit GlgD	NA	NA	NA	NA
WP_151623491.1\|2044859_2046143_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_151623492.1\|2046440_2047820_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_151623493.1\|2048034_2049171_+	DnaD domain protein	NA	NA	NA	NA
WP_151623494.1\|2049188_2050181_+	ATP-binding protein	A0A1X9I6C4	Streptococcus_phage	2.7e-08	27.7
WP_151623495.1\|2050202_2051381_+	ribose-phosphate diphosphokinase	A0A1L7N134	Ralstonia_phage	1.0e-09	26.9
WP_151623496.1\|2051592_2052795_-\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	7.7e-90	44.4
WP_151622274.1\|2053021_2054515_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_151623497.1\|2055063_2057244_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_151623498.1\|2057369_2059922_+	hypothetical protein	NA	NA	NA	NA
WP_151623499.1\|2059905_2060394_-	hypothetical protein	NA	NA	NA	NA
WP_151623500.1\|2060583_2062536_-	hypothetical protein	NA	NA	NA	NA
WP_151623501.1\|2062577_2063756_-	class B sortase	NA	NA	NA	NA
WP_151623502.1\|2063876_2074721_-	hypothetical protein	NA	NA	NA	NA
WP_151623503.1\|2075036_2076239_-\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	2.0e-82	43.0
WP_151623504.1\|2076528_2077140_-	cell filamentation protein fic	NA	NA	NA	NA
WP_167511349.1\|2077144_2077309_-	antitoxin VbhA family protein	NA	NA	NA	NA
WP_151623505.1\|2077532_2079443_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.2e-52	29.0
WP_151623506.1\|2079435_2081208_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	3.1e-34	28.4
WP_151623507.1\|2081211_2081694_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_151623508.1\|2081981_2082554_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_151623509.1\|2082753_2083692_-	ROK family glucokinase	NA	NA	NA	NA
WP_151623510.1\|2083713_2085933_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_151623511.1\|2086144_2087203_+	galactose-1-epimerase	NA	NA	NA	NA
WP_151623512.1\|2087384_2088323_-	transketolase family protein	NA	NA	NA	NA
WP_151623513.1\|2088322_2089150_-	transketolase	G9E5U1	Micromonas_pusilla_virus	5.8e-12	31.2
WP_151623514.1\|2089208_2090633_-	hypothetical protein	NA	NA	NA	NA
WP_167511350.1\|2090926_2091928_+	zinc dependent phospholipase C family protein	NA	NA	NA	NA
WP_151623516.1\|2092395_2092557_+	rubredoxin	NA	NA	NA	NA
WP_151623517.1\|2092582_2092933_+	Spx/MgsR family RNA polymerase-binding regulatory protein	M1PLC0	Streptococcus_phage	4.3e-17	41.9
WP_151623518.1\|2093135_2093807_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_151623519.1\|2093845_2094541_+	flavin reductase	NA	NA	NA	NA
WP_151623520.1\|2094543_2094846_+	Dabb family protein	NA	NA	NA	NA
WP_151623521.1\|2094863_2095421_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_151623522.1\|2095451_2096234_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_151623523.1\|2096248_2096476_+	purine biosynthesis protein PurH	NA	NA	NA	NA
WP_151623524.1\|2096546_2097332_+	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	1.3e-05	33.3
WP_151623525.1\|2097518_2098064_+\|tRNA	prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_151623526.1\|2098105_2098684_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.8e-18	36.0
WP_151621986.1\|2098716_2099406_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_151623527.1\|2099641_2100733_+	radical SAM protein	NA	NA	NA	NA
WP_151623528.1\|2100751_2101222_+	hypothetical protein	NA	NA	NA	NA
WP_151623529.1\|2101773_2102043_+	hypothetical protein	NA	NA	NA	NA
WP_151623530.1\|2102426_2102936_+	hypothetical protein	R9TGI0	Vibrio_phage	1.2e-07	29.8
WP_151623531.1\|2102962_2103496_+	hypothetical protein	NA	NA	NA	NA
WP_167511351.1\|2103515_2103908_+	DUF2127 domain-containing protein	NA	NA	NA	NA
WP_151623533.1\|2104571_2105675_+	hypothetical protein	NA	NA	NA	NA
WP_167511352.1\|2105687_2105855_+	hypothetical protein	NA	NA	NA	NA
WP_151623535.1\|2105881_2106265_+	glyoxalase	NA	NA	NA	NA
WP_151623537.1\|2106307_2107030_+	hypothetical protein	NA	NA	NA	NA
WP_151623539.1\|2107805_2109299_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_151623541.1\|2110178_2111072_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	9.3e-40	36.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP043028

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection