CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044545	Pradoshia sp. D12 chromosome, complete genome	4 crisprs	csa3,DEDDh,DinG,RT,cas3	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044545_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044545_1

338075-338184

Orphan

Consensus_repeat	Method
AGGTAGGTGAAGTGTGGAGGAAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044545_1

>merge|NZ_CP044545|1|338075-338184|CRISPRCasFinder
AGGTAGGTGAAGTGTGGAGGAAAGCAGCTATGCCCTACCTATGCCCTACCTATGCCTGACCTATGCCGGGTTAAAGGTGCTTCATAGGTAGGTGAAGTATGGAGGAAAGC

>NZ_CP044545|1|1|338075-338184|CRISPRCasFinder
AGGTAGGTGAAGTGTGGAGGAAAGC	AGCTATGCCCTACCTATGCCCTACCTATGCCTGACCTATGCCGGGTTAAAGGTGCTTCAT
AGGTAGGTGAAGTATGGAGGAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044545.1\|WP_066108528.1\|347332_348508_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP044545.1\|WP_139892760.1\|353746_355165_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181061
NZ_CP044545.1\|WP_140462280.1\|322355_323909_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP044545.1\|WP_066109795.1\|328406_329744_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP044545.1\|WP_066109805.1\|326360_326687_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP044545.1\|WP_066108529.1\|346854_347346_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_CP044545.1\|WP_066109808.1\|325150_326035_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|188121
NZ_CP044545.1\|WP_066109798.1\|327423_327717_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044545.1\|WP_140462281.1\|324414_325086_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP044545.1\|WP_140462127.1\|351536_353771_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NZ_CP044545.1\|WP_139892762.1\|349906_350626_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
NZ_CP044545.1\|WP_066109793.1\|329967_332034_+\|PTS-glucose-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|273923
NZ_CP044545.1\|WP_077248197.1\|326673_327246_+\|DUF2812-domain-containing-protein	unknown	unknown	gnl\|CDD\|378589
NZ_CP044545.1\|WP_077248198.1\|319776_322008_+\|DUF4129-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP044545.1\|WP_077248007.1\|339595_339946_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044545.1\|WP_066108525.1\|348507_349800_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176464
NZ_CP044545.1\|WP_066109816.1\|318541_319780_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP044545.1\|WP_066108519.1\|350618_350873_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	unknown	unknown	gnl\|CDD\|235659
NZ_CP044545.1\|WP_066108532.1\|346333_346534_+\|NETI-motif-containing-protein	unknown	unknown	gnl\|CDD\|379439
NZ_CP044545.1\|WP_066108516.1\|350869_351553_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|235140

Protein	Function_ID	Function_description	E-value
NZ_CP044545.1\|WP_066108528.1\|347332_348508_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0
NZ_CP044545.1\|WP_139892760.1\|353746_355165_+\|amidophosphoribosyltransferase	gnl\|CDD\|181061	PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional.	0
NZ_CP044545.1\|WP_140462280.1\|322355_323909_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP044545.1\|WP_066109795.1\|328406_329744_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.27568e-153
NZ_CP044545.1\|WP_066109805.1\|326360_326687_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	5.756e-13
NZ_CP044545.1\|WP_066108529.1\|346854_347346_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	4.98086e-92
NZ_CP044545.1\|WP_066109808.1\|325150_326035_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|188121	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase.	1.53104e-92
NZ_CP044545.1\|WP_140462281.1\|324414_325086_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	1.76114e-16
NZ_CP044545.1\|WP_140462127.1\|351536_353771_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NZ_CP044545.1\|WP_139892762.1\|349906_350626_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	5.54496e-142
NZ_CP044545.1\|WP_066109793.1\|329967_332034_+\|PTS-glucose-transporter-subunit-IICBA	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP044545.1\|WP_077248197.1\|326673_327246_+\|DUF2812-domain-containing-protein	gnl\|CDD\|378589	pfam11193, DUF2812, Protein of unknown function (DUF2812). This is a bacterial family of uncharacterized proteins, however some members of this family are annotated as membrane proteins.	7.8498e-27
NZ_CP044545.1\|WP_077248198.1\|319776_322008_+\|DUF4129-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.59201e-25
NZ_CP044545.1\|WP_066108525.1\|348507_349800_+\|adenylosuccinate-lyase	gnl\|CDD\|176464	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).	0
NZ_CP044545.1\|WP_066109816.1\|318541_319780_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.26363e-34
NZ_CP044545.1\|WP_066108519.1\|350618_350873_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	gnl\|CDD\|235659	PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed.	3.39899e-37
NZ_CP044545.1\|WP_066108532.1\|346333_346534_+\|NETI-motif-containing-protein	gnl\|CDD\|379439	pfam14044, NETI, NETI protein. This family includes the B. subtilis YebG protein, which is functionally uncharacterized. This is not a homolog of E. coli YebG, which belongs to pfam07130. This family of proteins is found in bacteria. Proteins in this family are typically between 42 and 66 amino acids in length and contain a conserved NETI motif.	1.50164e-22
NZ_CP044545.1\|WP_066108516.1\|350869_351553_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	1.32604e-159

>NZ_CP044545.1|WP_066109793.1|329967_332034_+|PTS-glucose-transporter-subunit-IICBA
MFKKVFGVLQKIGKALMLPVAILPAAGILLALGNAIHNPNLLDLMPFLDAGWIQKVATVMEDSGQIVFSNLSLLFAVGVAVGLAGGEGVAGLAAIIGYLIMNVTMGVVLNVTADMAANDPSYANVLGINTLQTGVFGGIIVGLLAAYMYNRFFRIELPSYLGFFAGKRFVPIITAASALILGLLMTLIWPPIQHGLNTLSQNMIDTNLTLAAFIFGVIERSLIPFGLHHIFYSPFWYEFGQYTNKAGEIVRGDQAIFFAQIKDGVKLTAGTFMTGKYPFMMFGLPAAALAIYHEAKPEKKTLVAGIMGSAALTSFLTGITEPMEFSFLFVAPVLFGIHAIFAGLSFMTMQLLNVKIGMTFSGGVIDFILFGIVPNRTAWWLVIPVGLVIAVIYYFGFRFAIRTWNLRTPGREDEDDESAQGKGGSVDELPYDILEAMGKKENIAHLDACITRLRVEVNDIAKVDKDKLKALGAAGVLEVGNNIQAIFGPRSETIKSQMKDIMAGNKPRPTKAASDNVEAEIQQQIEEVNPDALKTDFSKGEFAAPLEGQLIPISEVPDQVFAEKMMGDGFAMIPSEGIVASPVDGEIISIFPTKHALAIKSDSGHELLIHVGIDTVKLNGKGFETKVKDGDKITQGQILMEFDLNFIKSNATSIITPIVFTNLLAGEGIKLVKQGKVKLGEVHIVDIM
>NZ_CP044545.1|WP_066109795.1|328406_329744_+|NCS2-family-permease
MKKYFQFDELGTNYKREIIGGITTFLAMAYILVVNPLQLSLADVPDLPDSMRMDHGAVFVATALAAAVGSIFMGLIAKYPIALAPGMGLNAFFAYTVILTFGIPWQTALAGVLASGFIFAILTLTGLRETIINAIPAELKYAVGAGIGLFITFVGMKNAGIIVNNDATLIGIGDFTDGNTLLAIVGLLITVIFLVKGVKGGIFYGMIITAIIGMLANLIEIPDSIFGAIPSVAPTFGVAIEPYFNPIQSDLFTIQFLVVVLTFLFIDFFDTAGTLMAVANQAGLTKDNKLPRAGKALFADSLATMTGALFGTSTTTSYIESTAGVAAGARTGFAAVVTGLLFLLSLFLYPLLSVITSPVTAPALIIVGVLMCSSLGDINWSKLEIAVPAFLTIIMMPLSGSIAAGIACGFIFYPITMIVAGRIKEIHPIMYGMFVIFVCYFIFLS
>NZ_CP044545.1|WP_066109798.1|327423_327717_-|hypothetical-protein
MDTQNFINVKIDKEQLEYAKNLQNLLCKRLDTKQPVEYEIPDIIAEQALFLYIDTMERYYRLEGKDWEDFYNNFSGVTNVPRKIEDFREQNIKPYKK
>NZ_CP044545.1|WP_077248197.1|326673_327246_+|DUF2812-domain-containing-protein
MMENDMKREFRWFMLTDYEKEETFLREMHNKGYKLVKVKLPGFYYFELCEPEDVVYKLDFNPQTSEDKQSYLQMYADYGWEYMQDINEYSYFRKSAGNTDEGDTNIFSDDQSKLDMLKRIFMKKLVPLLGIFLLFIVCSAMSIALGGIESSWNRGFIIFWSILFLIYLVIFVYCGRGFYKLRKNYSHRVE
>NZ_CP044545.1|WP_066109805.1|326360_326687_+|PadR-family-transcriptional-regulator
MEERIKRIYIPMTETGFYILFCMQEEMHGYNIAKKVKEMTGGEIIISPGTMYGSLSKMEKDGLIMFVREENKRKFYMITELGKQILNIEIRRIERLYQNSRGGLYDGK
>NZ_CP044545.1|WP_066109808.1|325150_326035_+|alpha/beta-fold-hydrolase
MKITEGFMPYLDFKTYYRIVGENTGNKKPLILLHGGPGSTHNYFEVLDQFVEEDGRQLIMYDQIGCGESYVENRPNLWNAEVWTEELIALRKHLGLEECHLLGQSWGGMLLLNYVCNYKPNGIKSIILSSTLPASWMWGEEQQRMIKFMPKDMQEAIAIATSTGNYDAPAYLAAEEEYMIRHAGGPVTEDSPECMKRPRKIGNEAYVVGWGPNEFTPLGTLKDYDVTAQLKDIQEPALVINGGSDLCTPYIAKYMYDHIPNSRWELFRDCRHSCFVEDTEKYIALLKEWLNANE
>NZ_CP044545.1|WP_140462281.1|324414_325086_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MTTKLFIQALTKFLLGVVLVGLLIFLPAGTLLFAYGWLFMGILFVPMFLAGIVMMFKNPELLKKRLNVKEKQDEQCLVVKLSGLMFLAGFIVAGLGFRFDWYTLPKSVVICAAVVFLVAYILYAEVLRENTYLSRTIEVQENQKVIDTGLYGIVRHPMYSVTLLLFLSMPIVLGSIYSFFIFLVYPFIIAKRIKNEEKLLEKELDGYREYKQKVKYRLIPFIW
>NZ_CP044545.1|WP_140462280.1|322355_323909_+|glutamine-hydrolyzing-GMP-synthase
MIETTDLPIQEMIVVLDFGSQYNQLITRRIREFGVYSELHPHTITVEEIQKLNPKGIIFSGGPNSVYDATAFTCDERIFDMGIPVMGICYGMQLMTQHFGGKVERASKREYGKAEIKLNHESLLFNGLPTEQMVWMSHGDHVVTAPEGFQVDATNPSCPIAAMSDHSRQLYAVQFHPEVRHSVYGNDLLKNFVFGACKCKGDWSMANFIEMEMDKIRKTVGDKQVLCALSGGVDSSVVAVLIHKAIGDQLTCIFVDHGLLRKGEAEGVMKTFREGFNMNVIKVDAKERFMKKLAGVSDPEQKRKIIGNEFIYVFDDEATKLEGIDYLAQGTLYTDIIESGTATAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVRALGSELGIPDEIVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILREEIKNAGLDRDIWQYFTVLPDIRSVGVMGDARTYDYTIGIRAVTSIDGMTSDWARIPWDVLEKISVRIVNEVNHINRVVYDITSKPPATIEWE
>NZ_CP044545.1|WP_077248198.1|319776_322008_+|DUF4129-domain-containing-protein
MKMKTNNLHPGIRLLLFLFAFIMLIEWMRPVGEVTNTSQIKYFIIFAAVSLVMYAFRVSWKIMTPALSVYIGMSLYLIFYRPEFYLTEDSWIRAFFIDIKEGLFSVFSTDWQGLSPEFRTFLFFILIWMFTYLIHYWVQVKQRLFLFLFMTFIYVTVLDTFTTYDSDQAIVRVVVIGFAILGMLALVRLLIGENIHYTNRTAIRWLIPLSSMIAFAVVIGFFAPKPQAIWPDPISFIKSTSEKFGSTQKRIGYDKDDSKLGGDFIGDDGVVFRASSSVRTYWKIENKNVYTGKGWETGADYGMGQTILESEPAMLYDYRGETTNTLSTAELEFEIDHGHIPYPSPMAIEQIYNLNPEDESVFSSLLYSGDSSEITPIYEDDTNKNELKKVGVQFRSPTYYLDVLQQDEINDLYEMEMDLLLRQSMGIPDYVPERVSSLAIELAEKTGSNSMYDQVKAIEDYLKGEKFTYSKEDVPYPEESQDYVDQFLFETQIGYCDNFSSAMVVMVRSLGIPARWVKGYTAGDLVYDQELGESRYVITNNNAHSWPEVYFPSVGWVPFEPTKGFSSEVRFTASQEVSNDQEETQVTPETNQPENKEPEKPVETKDTASQFTFGTIKGKIAEHWKKALVVILVLGGAAALLYRIRGKWMPHIWVFYYKRLMKKPNYSNAYMQLLRELNRYGIKRKPGQTLREYAIYVDRFFGSSDMNRLTHAYEKHIYSGEKTEMDWRNFQEQWEKMILRTIA
>NZ_CP044545.1|WP_066109816.1|318541_319780_+|DUF58-domain-containing-protein
MKFIRMTLNKWEKWWKFVILLLLLIMTFTYAMFQGGFVSWFLFYSFLPFALYALMIFVYPLSDFTVERVLGDQELTAGDPVVMKIIIKRNMPVPIAYLLIHELLPERLEILLGREKISSIVFPGFRKRIELSYNIKSMPRGEHTFNKLEIRTGDILGLIEKSRMIDSDKKILVLPATVPLPLRQVLGDYEQGKRTNSYKIRNETAMVSGIRDYAPGDRMTVIDWKSSARGVGLKTKNFEEKHSSDFFLLINCESDHSVFEEMVTFSASIAEIGLTKGMKLGLWAGGGGLDNLLEVKEGKGYVHKALNFMAKIKASPKIDVSSPRFYTPQTRFIPPNASLIVVTSVLHLPFVKAYTNLAGGIHSLYILFFCESSHVLNKAEQEAYTFGINHGAKMSIIRNREDWGVFEERGGR
>NZ_CP044545.1|WP_077248007.1|339595_339946_+|hypothetical-protein
MQRILEDKGYDELSYEGERTRTYTISDLTKLPAKQDWAVQSIEPEPYLNKEIHLVRFFVKGHPLDNEFQEGKISVTVMMWNREVIGGTSFPYSKHNDMLGGSYSLDGKTSEEIQSK
>NZ_CP044545.1|WP_066108532.1|346333_346534_+|NETI-motif-containing-protein
MAKPKKQKFELQENESIDECLERMKKEGYFPVRRMEKPIFKEVKNGDQIEYIPVARQIIFEGKSID
>NZ_CP044545.1|WP_066108529.1|346854_347346_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MNDLKVGVIMGSISDWETMKHVCTILDDFKVAYEKKVISAHRTPDLMFEYAQSARSRGIKVIIAGAGGAAHLPGMVAAKTTLPVIGVPVQSHALNGLDSLLSIVQMPGGVPVATMAIGKAGAKNAGLLAVQILGTFEQELAEELEQYRLKIQRQSIESCDELE
>NZ_CP044545.1|WP_066108528.1|347332_348508_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MNLSKQAPVILPGQTIGIIGGGQLGRMLALAARNLGFKIAVLDPTPNSPCGQIADMEITAPFNDVEALQRLAKISDVLTFEFENIDADALDQLTGNPYIPQGTDILRITQDRVLEKQAIEKSGVKVVPFEVIASFEDLRQAISKLGYPSVLKTARGGYDGKGQLVIRDKGDLAKGSELLSHGVCVLESFIPFQKEISVIVTRKLDGSIRVFPVAENIHVNNILHQSIVPARINENTQIHAIGSAVQLAESLQVVGTLAVEMFLLDQDDILVNELAPRPHNSGHFSIEACETSQFEQHIRAVCNWPLGHTELHSSAVMVNVLGQHLEPVIKALGNEPDWKVHIYGKREAKKDRKMGHITVLGEHPMEILEMLNQSNIWTEQTGDKKEKVDMK
>NZ_CP044545.1|WP_066108525.1|348507_349800_+|adenylosuccinate-lyase
MIERYTRPEMGKIWTEENRFQAWLEVEILACEAWAELGAIPKEDVKVMRERASFDVNRIKEIEEETRHDVVAFTRAVSESLGEERKWVHYGLTSTDVVDTALSYLLKQANDILIADVERFITILAEKAKEHKYTVMMGRTHGVHAEPTTFGLKMALWYEEMKRNLKRLKEAADTVEYGKISGAVGTYANIDPFVEKFVCENLGIKPSPISTQTLQRDRHAQYMSTLALIATSIEKFATEIRGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHMMTAYENVSLWHERDISHSSAERIILPDATILLNYMLNRFGNIVKNLTVFPDNMKRNMDRTYGLIYSQRVLLALIDKGLSREKAYDTVQPKAMEAWETQIQFRELLEADETITAYLSTEELDDCFDYHYHLKNVDFIFERMGL
>NZ_CP044545.1|WP_139892762.1|349906_350626_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MAKNELLYEGKAKQIYATDNPEIVLIRYKDSATAFNGEKKAMIEGKGHLNNQITSLLFEWLHLKGIESHFIKKISETEQLVKRVTIIPLEVVVRNVAAGSFSKRLGVEEGTPLKRPIVEFYYKDDKLGDPLLTEDHINVLDLATAGEVEILKKQSMQINEMLRSLFASMDIRLIDFKLEFGKDEKDHVLLADEISPDTCRLWDSHTNEKLDKDIFRRNLGSLTDAYKKILAKLEDVQHV
>NZ_CP044545.1|WP_066108519.1|350618_350873_+|phosphoribosylformylglycinamidine-synthase-subunit-PurS
MYKVKVYVTLRESVLDPQGTAVQKSLNAMNFPEVRDVRIGKYMELELSESTADVDEAVRNMCEKLLVNTVIEDYRYSIEEVIGQ
>NZ_CP044545.1|WP_066108516.1|350869_351553_+|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MKFAVIVFPGSNCDIDMYHAVRDEVGEDAEYVWHTETSLEGFDAILLPGGFSYGDYLRCGAIAQFSPIMEAVKRAALDGIPILGVCNGFQVLLEAGLLPGAMRRNADLKFICRPQKLNVVNNETPFTSSYTKNEQITIPIAHGEGNYYCDEETLEQLKTQNRILFTYDRNPNGSHQDIAGIMNKQGNVLGMMPHPERAVSSLLGSADGIKLFKSIVQYWRETNVVNA
>NZ_CP044545.1|WP_140462127.1|351536_353771_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MSLMLEPSPTMIKEERIYATMGLTDDEFAKIEKILGHLPNYTETGLFSVMWSEHCSYKNSKPVLRKFPTTGKRVLQGPGEGAGIVDIGDGQAVVFKIESHNHPSAIEPYQGAATGVGGIIRDVFSMGARPIAMLNSLRFGELTTPRMKYLFEEIVAGIAGYGNCIGIPTVGGEIQFDPSYEGNPLVNAMCVGLINHEDIKKGQAHGVGNTVMYVGAKTGRDGIHGATFASEELTDDSDSKRPAVQVGDPFMEKLLLEACLELVKSDALVGIQDMGAAGLISSSAEMASKAGSGIEMNLDRIPQRETGMTPYEMMLSESQERMLIVTKKGREQEIEELFGKYGLEAVDVGTVTEDKMIRLTYRGEVVANVPADALAEEAPVYYKPSKEPNYFQEFQAMEDEVPVINNYTETLLSLLAQPTIASKEWVYDQYDYMVRTNTVVGPGSDAAVVRIRGTEKALAMTTDCNSRYLYLDPETGGQIAVAEAARNIICSGGEPLAITDCLNFGNPEKPEIFWQLEKAADGLSGACRVLGTPVIGGNVSLYNETNGEAIYPTPVVGMVGLVHNLKHITTQSFKEKGDLIYLIGETYAEFGGSELQKFMNDGRIFGKAPHLNLQVEKDRQEKLLKAIQAGVIKSAHDLAEGGLSIALAEGLFGAENLGFEVNLEGDLATRLFAESQSRFLVTVSPEQVGPFKEIIPEAVQIGIVTDTEKYVIHAGQEETVIDIEAKQLLIAWKGAIPCLLKSVD
>NZ_CP044545.1|WP_139892760.1|353746_355165_+|amidophosphoribosyltransferase
MLAEIRGLNEECGLFGIWGHTEASQLTYYGLHSLQHRGQEGAGMVVTDGQVLKSHKAEGLVNEVFNQKIIEDMKGRSAIGHVRYATAGGGGVANVQPFLFNSQTVGSFALAHNGNLVNATQLKNQLEIDGSIFHTTSDTEVLAHLIRRSGSACFKKRIKQALSFVQGAYAFLVMTETEMMIAVDPHGLRPVSIGRIGEGYVAASETCAFDLIGADYIRDVRPGELVTINDDGIQSEYFAESQGRAMCSMEYIYFSRPDSNIDGINVHTARKNLGKQLAIEAQIEADVVTGVPDSSISAAIGYAEVSGIPYEMGLIKNRYVGRTFIQPSQSLREQGVKMKLAPVRGVVEGKRVIMVDDSIVRGTTSRRIVTMLKEAGAKEVHVCISSPPIKNPCFYGIDTSSKEELIAGFNSVEEIREMIGADSLTFLSVEGTVEAIGRPFGGEYRGQCMACFTGNYPTEIYATDDQAYEKIK

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Crispr_ID: NZ_CP044545_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044545_2

1033666-1033748

Orphan

Consensus_repeat	Method
AAAAATCATGATAAGGACTTCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044545_2

>merge|NZ_CP044545|2|1033666-1033748|CRISPRCasFinder
AAAAATCATGATAAGGACTTCTACCAAGAAATTGGCGAAAAGGGTGGAGAAGCCACCAAGAAAAATCATGATAAAGACTTCTA

>NZ_CP044545|2|2|1033666-1033748|CRISPRCasFinder
AAAAATCATGATAAGGACTTCTA	CCAAGAAATTGGCGAAAAGGGTGGAGAAGCCACCAAG
AAAAATCATGATAAAGACTTCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044545.1\|WP_066101354.1\|1029332_1029848_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184236
NZ_CP044545.1\|WP_066101330.1\|1034790_1035684_+\|RimK-family-alpha-L-glutamate-ligase	unknown	unknown	gnl\|CDD\|273261
NZ_CP044545.1\|WP_140461165.1\|1036632_1037520_+\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|187553
NZ_CP044545.1\|WP_139891416.1\|1029926_1030658_-\|esterase-family-protein	unknown	unknown	gnl\|CDD\|225256
NZ_CP044545.1\|WP_066101315.1\|1043509_1044982_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224893
NZ_CP044545.1\|WP_066101340.1\|1032380_1033055_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_CP044545.1\|WP_066101318.1\|1042270_1042747_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044545.1\|WP_066101365.1\|1025709_1025967_+\|sporulation-protein	unknown	unknown	gnl\|CDD\|372899
NZ_CP044545.1\|WP_151675515.1\|1035810_1036548_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273261
NZ_CP044545.1\|WP_139891573.1\|1031910_1032306_+\|spore-coat-protein	unknown	unknown	gnl\|CDD\|377935
NZ_CP044545.1\|WP_139891414.1\|1033854_1034619_-\|YqcI/YcgG-family-protein	unknown	unknown	gnl\|CDD\|370174
NZ_CP044545.1\|WP_139891415.1\|1030793_1031354_+\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|224186
NZ_CP044545.1\|WP_066101363.1\|1026035_1028348_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_CP044545.1\|WP_066101312.1\|1044986_1045847_+\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NZ_CP044545.1\|WP_066101360.1\|1028503_1028791_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044545.1\|WP_066101322.1\|1038686_1040309_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|378342
NZ_CP044545.1\|WP_140461166.1\|1040751_1041951_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP044545.1\|WP_066101357.1\|1028901_1029327_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP044545.1\|WP_066101323.1\|1038077_1038452_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044545.1\|WP_066101348.1\|1031384_1031600_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP044545.1\|WP_066101354.1\|1029332_1029848_-\|hypothetical-protein	gnl\|CDD\|184236	PRK13679, PRK13679, hypothetical protein; Provisional.	1.76309e-87
NZ_CP044545.1\|WP_066101330.1\|1034790_1035684_+\|RimK-family-alpha-L-glutamate-ligase	gnl\|CDD\|273261	TIGR00768, Tetrahydromethanopterin:alpha-L-glutamate_ligase, alpha-L-glutamate ligase, RimK family. This family, related to bacterial glutathione synthetases, contains at least three different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).	1.98157e-52
NZ_CP044545.1\|WP_140461165.1\|1036632_1037520_+\|TIGR01777-family-protein	gnl\|CDD\|187553	cd05242, SDR_a8, atypical (a) SDRs, subgroup 8. This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.36415e-122
NZ_CP044545.1\|WP_139891416.1\|1029926_1030658_-\|esterase-family-protein	gnl\|CDD\|225256	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism].	1.36783e-71
NZ_CP044545.1\|WP_066101315.1\|1043509_1044982_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	4.79506e-142
NZ_CP044545.1\|WP_066101340.1\|1032380_1033055_+\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	2.71039e-112
NZ_CP044545.1\|WP_066101312.1\|1044986_1045847_+\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	3.21085e-173
NZ_CP044545.1\|WP_139891573.1\|1031910_1032306_+\|spore-coat-protein	gnl\|CDD\|377935	pfam07875, Coat_F, Coat F domain. The Coat F proteins, which contribute to the Bacillales spore coat. It occurs multiple times in the genomes it is found in.	6.4682e-18
NZ_CP044545.1\|WP_139891414.1\|1033854_1034619_-\|YqcI/YcgG-family-protein	gnl\|CDD\|370174	pfam08892, YqcI_YcgG, YqcI/YcgG family. This family of proteins are functionally uncharacterized. The family include YqcI and YcgG from B. subtilis. The alignment contains a conserved FPC motif at the N-terminus and CPF at the C-terminus.	2.58555e-76
NZ_CP044545.1\|WP_139891415.1\|1030793_1031354_+\|phosphatidylglycerophosphatase-A	gnl\|CDD\|224186	COG1267, PgpA, Phosphatidylglycerophosphatase A and related proteins [Lipid metabolism].	3.40836e-40
NZ_CP044545.1\|WP_151675515.1\|1035810_1036548_+\|hypothetical-protein	gnl\|CDD\|273261	TIGR00768, Tetrahydromethanopterin:alpha-L-glutamate_ligase, alpha-L-glutamate ligase, RimK family. This family, related to bacterial glutathione synthetases, contains at least three different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).	7.85802e-36
NZ_CP044545.1\|WP_066101365.1\|1025709_1025967_+\|sporulation-protein	gnl\|CDD\|372899	pfam14069, SpoVIF, Stage VI sporulation protein F. The sporulation-specific SpoVIF (YjcC) protein of Bacillus subtilis is essential for the development of heat-resistant spores. Its expression is governed by SigK.	3.68255e-21
NZ_CP044545.1\|WP_066101322.1\|1038686_1040309_-\|SH3-domain-containing-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	3.07591e-31
NZ_CP044545.1\|WP_140461166.1\|1040751_1041951_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	5.73636e-83
NZ_CP044545.1\|WP_066101357.1\|1028901_1029327_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.43196e-23
NZ_CP044545.1\|WP_066101363.1\|1026035_1028348_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	8.27021e-151

>NZ_CP044545.1|WP_066101340.1|1032380_1033055_+|SOS-response-associated-peptidase
MCGRFTLFSTFETIIERFHIEAAFDEADYQVSYNIAPSQRIVAVINDGSKNRLGYLRWGLIPSWAKDEKIGYKLINARSETLAEKPSFRKAYQNKRCLIVADSYYEWKQTPERKIPMRIKLKSGEPFGLAGLWESWNSPEGQAVCTCTIITTSSNELMSSIHDRMPVILNPEDEQKWLNPKIHDSHLLKQYLRPFNPELMEAFEVSADVNSPKNNSEHVIQRIC
>NZ_CP044545.1|WP_139891573.1|1031910_1032306_+|spore-coat-protein
MKVRDVPNQELKNLYLTTIKVLERYIKELLQYFPRAPQREEDEREQPDASFFAGNLLGLTKTLIRNYSIAITETATPVLKKTLTNQLNGMIDLHSQVFNYMYKNNMYPAYDLSALIKNDVNNANRAIAKKY
>NZ_CP044545.1|WP_066101348.1|1031384_1031600_-|hypothetical-protein
MNDLLRSMREQIPIDIIYVSNKNIFTKRRILVKSMGEQLIRAYCFNRKLYRTFKKEQILSTQLVYQSQRSS
>NZ_CP044545.1|WP_139891415.1|1030793_1031354_+|phosphatidylglycerophosphatase-A
MIKKRVHSKTVTNAAKLALQSRGVTLEAIAEIVYEMQFPYNDNLTLDECIYSIERVLMKREIQHALLVGIELDRLAEKGMLSEPLQSIVESDESLFGVDETIALGAVLGYGSIGVTTFGHLDKNKVGIIRYLDTKKEGRGVNTFLDDLVAAIAASAASRLAHRLRDKEESLSEDEIEDIDHEEMIG
>NZ_CP044545.1|WP_139891416.1|1029926_1030658_-|esterase-family-protein
MALKAGTIKGISFNSKELNEEIELLVYLPSAFSHLYKYSVLIAQDGKDYFQLGKIGRAADELLERQEIENIIIIGVPYKNVEDRWNKYHPDGLKHTAYKRFLAHELVPYIDAEYPTYQMGLSRALIGDSLAATVSLMAAMDYPNTFGKIALHSPLVNESVLSAVESFQFPHLTQIYHTIGKNETTVQTSKDGIIDFVQPNQELNSIIESKGFPVFYEEIDGDHTWRAWQSDMKRTLTWLFHRT
>NZ_CP044545.1|WP_066101354.1|1029332_1029848_-|hypothetical-protein
MNFGIAIFPSKNLQDIVNSYRKRYDSHYSRISPHVTLKSEFTATDEQIKEISAKLEEIANQHQPFTLKVLKVSTFQPVNNVIYLKIDPTAELSALHEDFHNDILGKDKKYKFVPHITIGQDLSDKEHNDILGQLRLMKFEHEEVVDHFHLLYQTENGAWKVYETYQLRKDN
>NZ_CP044545.1|WP_066101357.1|1028901_1029327_-|GNAT-family-N-acetyltransferase
MNIKIVSEKEELDQVFSVRTKVFVDEQNVPEEEEIDHLEEESTHFLVIDEESNPIGAGRFRVVDSYGKVERICILPDFRSKGVGKDLMNAIEQYALSKQIEILKLNAQNQAIPFYEKLGYSVISDEFLDAGIPHHTMKKHI
>NZ_CP044545.1|WP_066101360.1|1028503_1028791_+|hypothetical-protein
MGYISPITQYEYIQYTNRTIAAEKLTKNMISCFQPVQPIRFHRKNEERDSFDREINSDDFRGSSNRIYKNYVPTEIVKKTATEMTGVGQFINESI
>NZ_CP044545.1|WP_066101363.1|1026035_1028348_-|ATP-dependent-helicase
MKTANWKNESISLLTWPKEAFARIHEAGKNGELQCNHCGQPVYMYLGIHEEPYFIHRDSSRPPCVDKTEKTNPAVNEASVEYGGFRLPQSRSITNCSDETIWQGPKSITSLPSYNEKHLPGVNSNHPFIDILSAHGWLLDDQQANAVVTDARHLLVLAGAGSGKTRVLTARTAFLLLEKQTDPKSVMLVTFTSKAAAEMKSRLQQMPGVTPFMLQHVFTGTFHSIFYRILLQHEPQKWHSSKLIKFDGEKEYVLKIAASELGIDEREFAFDQALQQISRWKNDLLSPQDIHPADDWEVNCQELYKKYESYKEINNKFDFDDMQTGCYQLLKENEQILNFYRNRFKHFLIDEFQDINKVQYEIVRLLASNAESACFVGDDDQAIYSFRGSDSAFLQNLKLDYDYLETIILSANYRSGHKIIQTANKIVSQNKTRTPKKMVATHDQSPSPVLFYPFDEESEAIMIMTDITEKIRHGANPEDFAILYRTNTMSRAIFEKLASSSLPFRVDSDYDSFYTRKTVRSILAFMKASINPDDPGMLQDLLPPLYLKKSAVQDAKALSILNDCTLLEALRFLNNLKPFQMRAIDKAVSVIHSLKDLSPSTAIEMIEKELGFGAYLKKRGNEGNKMDKGSDDIKDVKIAARRFDTVLEFILHADHMTAMSKEIKSMSKKTINAIQLSTIHRSKGLEYKYVYILGCVDGNMPHDYALESWRDGDRKPMEEERRLLYVAVTRACSGLYISIPENRRSKRARSSRFLTILKGEPSYKEELITK
>NZ_CP044545.1|WP_066101365.1|1025709_1025967_+|sporulation-protein
MDNGFFKNMEKKTGVNMKDVMELANSLQNANFKDEKTVRNVIKRVSQIANKPVPKDVEDQLVQSIIKDGKSLDFNTIANMMNNKK
>NZ_CP044545.1|WP_139891414.1|1033854_1034619_-|YqcI/YcgG-family-protein
MNHLLIKSDFKKGNLLPRWLNEAYNYWSSTVSDNQFPCHFGMKAERDGLLRYTYCENHNFSALPHTLSEFLKLSRKNPSIRYALVLFVEPELNYQHLDYDYYNANFWSILSYLHEQDDKEWSNDIPLDPDDPHWEFVFNGEPIFVSGNAPFYQNRITRNLGDCLIMIFQPRRIFADTSYTTPHGRKAIEVIRKKVEKIENMPYHPDLGGYEDLSKREWKQYLITDDCNPIKGTCPMRNTLLSSGKGNQKKEKPC
>NZ_CP044545.1|WP_066101330.1|1034790_1035684_+|RimK-family-alpha-L-glutamate-ligase
MERKYGWLIYNGSLLSPKFMEIHDWYKESASKKGIILDLVKNTELFSVIEGNQTIIKSERQHARPDFILFLDKDIRLANQLEQMGYRLFNKASVIEVCDSKIMTFQALADHSIKLPKTIFSPLTFTNTLEKDHSFIEFIERELSYPIVIKEAYGSFGEQVYLVQTREELEKKRKELLQIPHLYQEFIKNSKGRDVRVHVVGDKVVASMLRTSETDFRANVTNGGVMHEYVLPKEFEELAIKASKIIGADFSGVDLLFGEEEEPILCEVNSNAHIKNIYDCTGIDVTEHIFDYILRMV
>NZ_CP044545.1|WP_151675515.1|1035810_1036548_+|hypothetical-protein
MSLIIDNGKLSVYMEEGNSLQPDFVINRTRDSQISLHFELMGCRVFNNSQVTDICNHKAKTHQMINSHGIKSVKTAISFTEGQSLLNYPLILKTNSGHGGTDVFKVDCKTELTKQMGELNKGDVILQEMCDNPGVDVRVFVLGREIIGAVKRYSSNSFKSNFSLGGKAERYTLSENQENLVNKISMIFDFDFVGIDFLIGQDGEFLFNEIEDAVGTRTLYQQYDFDVVHMYLKYINKQMVDMCAK
>NZ_CP044545.1|WP_140461165.1|1036632_1037520_+|TIGR01777-family-protein
MRKKVVITGGTGFIGQYFEKQFHSMGYDVLIISRSNEHINWDNNGEIRKALEGAELLVNLAGKSVNCRYNTSNKQEIVMSRTETTAILGSALLECTTPPPLWINSSTATIYRHAEDRPMTEKKGEIGSGFSVDVAKAWEETFFNFELPHTRKVALRIAIVLGESGGVMTPYKNLVTFGLGGYQGSGRQMFSWIHIEDLFQIVLFLKNREDLEGVFNCSSPHPLTNRELMTHLRNSMNRKIGLPTPAWMLKAGAILIRTEPELVLKSRWVLPERLEQAGYTFKYKNLKDALKDIFK
>NZ_CP044545.1|WP_066101323.1|1038077_1038452_+|hypothetical-protein
MNSRLFILAIIFSLVISLIPELKKQTIAVASANLGMTSEMDKVQFAHNSLSKTSNNIDSTIQVFDPITSEDIIGRIVPSKCLTGKGMVVEEISQTSEHVISSLYPFGIFIIFTGFIYMALRLKR
>NZ_CP044545.1|WP_066101322.1|1038686_1040309_-|SH3-domain-containing-protein
MRNSLTQKIVLIFITFGLVLFGTTDLYTKVDAATVSSSTLYQTTANVNLRAGSSNKHKVILTIPKGKNVTYLSKSGSWFKVKYANKTGFVSSSYLKKLTANSQTSTQATVTYQTTANINLRTGASNKHKVILTIPKGKNVTYLSKSGSWFKVKYANKTGFVSSSYLKKPTANSQASTQATVTYQTTANVNLRTGASNKHKVILTIPKGKNVTYLSKSGSWFKVKYANKTGFVSSSYLKKPTANSQTNSQATVTYQTTANVNLRTGASNKHKVILTIPKGKNVTYLSKSGSWFKVKYANKTGFVNSTYMKKSVIKETVPNYKNVRYYNTNIHIYTSNPNANLTVSKGKPNVLEPLSSIKLPNELAKINLGFFNSKMEHGGLFMVNGQVTSNHNPKYVIMEYKKTGKIDIRSIATPLINLQELEDMKENNYFAVGTSYSLVQNGKINLAHSEYFSHSKSRNPRTLFGQTKDGRFIMAVTDGRINGSSGLTASQSADVMMKLGAVEAVNLDGGGSSTLYINGNLINKLGESPRKIGSALFITK
>NZ_CP044545.1|WP_140461166.1|1040751_1041951_-|cation:dicarboxylase-symporter-family-transporter
MKQFGILPKIIFAIILGIGIGMIAPAWMLRIFTTFNGLFSSFLEFIIPFIIIGFIASGIGMMGKGAGKMLGITTGLAYASTIMAGLIAFFVAKALYPIILKNQTAQSFANPEEALLSPYFTIEMPAVMGVMTALLVAFTIGVGMASIKGEALLNVMEEFKEIVVKVINTIIIPLLPFHIFGIFANMTQGGQIASILSVFAKVFVMIIALHLFMLVIQYTVAGAASKKNPFKMLKTMLPAYFTALGTQSSASTIPVTVDRTKKMGVKEKIANFTVPLLATIHLSGSTITLVSCTMAVMLLQGTDASITQMLPFILMLGVTMIAAPGVPGGAVMAALGLLESMLGFSDNMLSLMIALYLAQDSFGTACNVTGDGAISALTERFVPKTSKEIIQNKQIENLI
>NZ_CP044545.1|WP_066101318.1|1042270_1042747_+|hypothetical-protein
MLGILEFQLSKIIVNIFIIIGIFCFVVLFTKQAEYVESLKGNAITSEDMKISLIKRMAYGAVLAIITILIEYILVYYLSGYFKVEINEFSFIFSIFVLCFFLMIGVGPKEYTEPTTNNYWVRQELYWTLDNKEFDILGKPYLIGAVTFFLINLVYFIV
>NZ_CP044545.1|WP_066101315.1|1043509_1044982_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MIEQERLFRLSQGRAPIYEALEEFKKKRIVPFDVPGHKRGRGNPELTAFLGEQAVSVDVNSMKPLDNLCHPVSVIKEAEELAAEAFGAAHAFFMVNGTTSAVQGMVLTACKAGDKIILPRNVHRSVINALVLCGAVPVYVNPEMDKNLGIALGMSLNQVEKAIKENPEAKAILVNNPTYYGICSDLRGIVKLAHQHNMLVLADEAHGAHLYFGKNLPVTAMAAGADMASVSMHKSGGSLTQSSFMLMGPSVNVGYARQIVNLTQTTSGSYLLLSSLDLSRRNLALNGERIFDDVINLAEYVRNEINQIGNYYAFSRELVNGDSIFDFDVTKLSVHTLDIGLAGIEVYDLLRDEYDIQIEFGDIGNILAYVSVGDRKRDVERLISALSEIRRRYSTDKSGLITQEYIDPEVVITPQEAFYADKESLSLRDTEGRVCSEFVMCYPPGIPILAPGERITKEIIEYIDYAKAKGCSMTGPEDLAIERLNVLKGV
>NZ_CP044545.1|WP_066101312.1|1044986_1045847_+|polyamine-aminopropyltransferase
MELWFHERSTAEVKLSIKVDKHLYSEQSEFQRIDIFESNEFGRFLTLDGYMMMTEKDEFIYHEMITHVPMAVHPNPRKVLVIGAGDGGVVRELTRYQQIEHIDMVEIDEKVVEACKNYLPLTASKLDDERVHIHYEDGLKFVRSCENQYDLIIVDSTDPFGPGEGLFTKEFYGNCYKALHEDGIMVNQHESPFYAEDRAAMQRAHQRIIDCFPISRVYQAHIPSYPSGHWLFGFASKKYQPLADLNQEAWKQLGIKTRYYNPNLHRGSFALPTYVEELLRDVEDIP

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Crispr_ID: NZ_CP044545_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044545_3

3496679-3496791

Orphan

Consensus_repeat	Method
TCTGCTTGTTTTTTATTTTCTTTTTCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044545_3

>merge|NZ_CP044545|3|3496679-3496791|CRISPRCasFinder
TCTGCTTGTTTTTTATTTTCTTTTTCTTGAAGTACTTTTTTGGACTCCAAGTCTGTTATCTCTTGTTCTAAATCGTTTATATGATCTGCTTGTTTTTTATTTTCTTCTTCTTG

>NZ_CP044545|3|3|3496679-3496791|CRISPRCasFinder
TCTGCTTGTTTTTTATTTTCTTTTTCTTG	AAGTACTTTTTTGGACTCCAAGTCTGTTATCTCTTGTTCTAAATCGTTTATATGA
TCTGCTTGTTTTTTATTTTCTTCTTCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044545.1\|WP_140461924.1\|3490598_3492206_+\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|226038
NZ_CP044545.1\|WP_066106296.1\|3493190_3493829_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044545.1\|WP_066106303.1\|3487886_3489182_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270452
NZ_CP044545.1\|WP_140461759.1\|3501451_3503827_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_CP044545.1\|WP_140461758.1\|3499866_3501249_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP044545.1\|WP_139892232.1\|3485328_3485961_+\|DUF624-domain-containing-protein	unknown	unknown	gnl\|CDD\|227865
NZ_CP044545.1\|WP_140461761.1\|3506418_3507267_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|225312
NZ_CP044545.1\|WP_140461754.1\|3486938_3487817_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224096
NZ_CP044545.1\|WP_140461760.1\|3505770_3506376_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
NZ_CP044545.1\|WP_140461925.1\|3493985_3494834_-\|DNA-directed-RNA-polymerase-subunit-delta	unknown	unknown	gnl\|CDD\|224824
NZ_CP044545.1\|WP_140461757.1\|3497158_3497932_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_CP044545.1\|WP_077248127.1\|3489371_3490520_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP044545.1\|WP_066106276.1\|3505146_3505680_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044545.1\|WP_066106290.1\|3498817_3499282_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NZ_CP044545.1\|WP_140461755.1\|3495937_3496579_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283060
NZ_CP044545.1\|WP_066106287.1\|3499351_3499729_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP044545.1\|WP_139892225.1\|3503868_3504609_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224561
NZ_CP044545.1\|WP_066106882.1\|3504749_3504983_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|224233
NZ_CP044545.1\|WP_139892231.1\|3486100_3486922_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223472
NZ_CP044545.1\|WP_139892229.1\|3492357_3493038_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP044545.1\|WP_140461924.1\|3490598_3492206_+\|family-43-glycosylhydrolase	gnl\|CDD\|226038	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].	0
NZ_CP044545.1\|WP_139892232.1\|3485328_3485961_+\|DUF624-domain-containing-protein	gnl\|CDD\|227865	COG5578, COG5578, Predicted integral membrane protein [Function unknown].	2.08807e-43
NZ_CP044545.1\|WP_066106303.1\|3487886_3489182_-\|extracellular-solute-binding-protein	gnl\|CDD\|270452	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold. This group represents the periplasmic component of an ABC transport system XBP1 that shows preference for xylo-oligosaccharides in the order of xylotriose > xylobiose > xylotetraose. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.47693e-77
NZ_CP044545.1\|WP_140461759.1\|3501451_3503827_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_CP044545.1\|WP_140461758.1\|3499866_3501249_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_CP044545.1\|WP_140461761.1\|3506418_3507267_-\|VOC-family-protein	gnl\|CDD\|225312	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only].	1.15797e-89
NZ_CP044545.1\|WP_140461754.1\|3486938_3487817_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.6686e-77
NZ_CP044545.1\|WP_140461760.1\|3505770_3506376_-\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	1.45615e-105
NZ_CP044545.1\|WP_140461925.1\|3493985_3494834_-\|DNA-directed-RNA-polymerase-subunit-delta	gnl\|CDD\|224824	COG1912, COG1912, Uncharacterized conserved protein [Function unknown].	5.5169e-116
NZ_CP044545.1\|WP_077248127.1\|3489371_3490520_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.87e-70
NZ_CP044545.1\|WP_140461757.1\|3497158_3497932_-\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.00208788
NZ_CP044545.1\|WP_066106290.1\|3498817_3499282_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	3.82485e-93
NZ_CP044545.1\|WP_140461755.1\|3495937_3496579_-\|hypothetical-protein	gnl\|CDD\|283060	pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1). This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys.	0.000239629
NZ_CP044545.1\|WP_066106287.1\|3499351_3499729_-\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	2.22604e-66
NZ_CP044545.1\|WP_139892225.1\|3503868_3504609_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	9.63439e-124
NZ_CP044545.1\|WP_066106882.1\|3504749_3504983_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	1.74938e-14
NZ_CP044545.1\|WP_139892231.1\|3486100_3486922_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.45155e-70

>NZ_CP044545.1|WP_140461755.1|3495937_3496579_-|hypothetical-protein
MENNQSSHNGSKKRNLLIVMIVVLLLALVFLVKSCSINEDPKDEQDVTTEVIKDEGKDNEDNLDQGNNTDHNQTTNNDKLSSGAQDSTNQNTNNKDGLVNGAGNNMQDNNVSDNQPGGSQDIDNQTTDNGNGLLDSNTGENTQSNSGTNDDHSSSGSQDSNNQTDSDTNPGQPNDSEDGGNGNRLNLLYDELIKANNTFEYFLEVTDEILENY
>NZ_CP044545.1|WP_140461925.1|3493985_3494834_-|DNA-directed-RNA-polymerase-subunit-delta
MKLKRLLVFQSDFGLSDGAVSAMYGVALSVDPSLKISNNTHDIPTFNIWEGSYRLLQAISYWPEGTVFVSVVDPGVGCDRRSIVAKTSGGHYVVTPDNGTLSHIKNKIGITEARVIDEKVNRLPRSGESYTFHGRDVYAYTGARIAAGVISFEEVGPEIPVDSLIELPLYEAYIHDHKITGIIEILDIRFGNLWTNISRELFRKLEISLGDKVWVQIEKDGTVRFEEEVVYGRSFADSALEEAILYVNSLDNLGLALNQKSFADTYHISTGSNWRITIRKAP
>NZ_CP044545.1|WP_066106296.1|3493190_3493829_+|hypothetical-protein
MNWLEPFNRDFFIDEEEDSSPFFRSKSIDGNGVPKQYSLLTQFFLLLSAQLSDSVTYYPIKNGLIKDKELREIILHFDERKEFIVNDKPIEIMLAKPNNDSLKHLMSNPLNPVIKSLFPQSKQLQQVQFSPSSPYRVIPEKINSYEDKEFDLVLAYLKENTESPSFGFQLSNWILNDSLKNSHALRYFSHHTQTLCLWIDESKRIISIEMQF
>NZ_CP044545.1|WP_139892229.1|3492357_3493038_+|hypothetical-protein
MDTFLYILFACFYAGLLIMMLQSIKKSGVSIVSNVLILVIVPLIYDNAILGIGKWIGEGEVLENLNAARYWMHAIFTPLLILFSWDVLKRARVKWVNTTSAILITVAFTLIAFLIELFTVVWDLSLKAEKSYGILSYSSTNSPQGPPIMILMVTLALLVSSIILWKRTGWYWIFVGTALMIVGSMVKIPIESGAITNAFELILLISLVFTKRYQDRYQGGKKLALG
>NZ_CP044545.1|WP_140461924.1|3490598_3492206_+|family-43-glycosylhydrolase
MMKIQNPILTGFNPDPSICRRDEDYYIAVSTFEWFPGVGIYHSKDLKNWSLVSRPLNRLSQLNMMGNPDSGGIWAPALSYHDGKFWLIYTDVKVTGGQWKDSHNYLSTCETIDGEWSDPIHLNSSGFDPSLFHDDDSKKYLVNMVWDHRLGNHSFYGIVLQEYSVEEKKLVGDKKIIFKGTDIKLTEAPHLYKWNGYYYLLTAEGGTKYDHQATIARSKTIDGPYEVHPENPLITSFPYPRNPLQKAGHASIVHTHTDEWFLVHLTGRPLPKENQALLDPRGFCPLGRETAIQRLTWENDWPYVVGGNQPSLEIEGPKMEEVKWEKDYPEKDDFNEKSLNLNFQTLRIPLGDHLSLEDKPGHLRLYGKESLTSKFTQAFVARRWQHFNFTAETKLAFNPDTFQQAAGLVNYYNTENWSALQLTWNEEKGRVLDLTVCDNFTFDRPLSGNEIPVPDEIEYVYIRSEVQTNTYHYSYSFDGEAWTQIPVTLYSYKLSDDYIRGGGFFTGAFVGMQCQDTSGEGKAADFDYFTYKVNE
>NZ_CP044545.1|WP_077248127.1|3489371_3490520_+|ROK-family-protein
MHVIKESPPLSRTDVANKTGLNKGTVSSLVSELIEEQLVSESGPGKSNGGRRPVMLFFNENAGYSIGVDLGVNYILGIVTNLQGKIHKEKLEKFQELTYEDIKKRLYEMIDCMIASIPDSPYGLVGIGIGVPGTVDTTGRILMAPNLNWKNIDLKNMVAKKYCVPVKVENEANCGAYGEKKFGVGINFTNMIYISIGFGIGGGLILNNQLYQGNNGLSGELGHMTIERSGEKCRCGDHGCWELYASERALVSQAKLMMNDPAITLEHLIDLAENEDLTAIELFSEIGKSIGIGINNIINIFNPNQVILGNRLAACEKWIHSSLVETIKNHSLSNHQKNLHIQYSSLASHSCALGVAAFSTEHFLDNDLYHQSIQTYPLVHQY
>NZ_CP044545.1|WP_066106303.1|3487886_3489182_-|extracellular-solute-binding-protein
MRKKKAFSFLAGFLALFLVLAGCSSETEKSNSDGKKVVKFMHLWPEGSSKQHHEIVQKIVADYEKEHKDVKVELEVLSNEQYKDKIKVLSASNELPDVGMTWSAGYLQPYVDGKKFAPLDDILEGDLKDSFVAGTSEAYQIDGKTYGLPLELNIASVFYNKKMFKDNGLEAPKTFDELVKAAKTLDKNGVEPIALGNKDKWTGSLWYMYLADRIGGTEALKGAIDRSGSFEDPALVSAAEKVQELVDANGFVNGFNGLSDEEAKSMFMNSQAAMYLIATWDLPNYTTNPDVPQEFKDQVGFFDFPSVDGKGDMNSYVGGPGVGLFVSEDSKVKEEAKDFVSYFVQQWGEKSVTDAGVIPATKIDAEKLDLPQMYVDVLGKLNKATNITLYADVQLSSDAAQVHLDQIQALFGKETTPEKFAKEHEKALSSK
>NZ_CP044545.1|WP_140461754.1|3486938_3487817_-|ABC-transporter-permease-subunit
MNKVMSNKWIIAMYILPALLLVSVLIFIPLILTGYYGLMDWDGIGAMKFIGLENYINAIQDAKFWDSAWHSILLAIFSTLSLIIYLAISLILASKIKGANLLRKIYLIPMLLSSVAIAQLWIKVFNPSNGILNTILVWFGVENPPLWLSDTSIVLYAIFIPILWQYAGFYILIYYAALKNIPESLIEAAKIDGATPWQIAMKIKLPLIMGVVKVTIVLAIVGSLKYFDLIYVMTGGGPNGSSEVMASYMYKLAFSSSNFGYGSAIGFLLLVITLIVTFIINKLTASKEEIQY
>NZ_CP044545.1|WP_139892231.1|3486100_3486922_-|ABC-transporter-permease-subunit
MARFGKIVLYICLTVVAVFQVFPIIWLFLFSLKSNQEIFAGSPFALPSEFRWENYLKVWDGGIGLYFFNSIWITGVAIILTVLFASMATYAITRMHWKFSKLVLGLFMIGLMIPIHSALIPLFNMFLNVNLIDNPWSIVLTYTAYNLPITMMILLGFYTTLPREIEEAAIIDGSSINRMFFRIVLPMSMPILSTTVIINMIYNWNEFVFVNTFISSDKYKTLTVGIQNFIGQYMTDWGAIGATLIISFLPLLLAFIFFSNKVIEGLSASAVKG
>NZ_CP044545.1|WP_139892232.1|3485328_3485961_+|DUF624-domain-containing-protein
MKDLGNSLYTILEWVMRFAYVNILWILFTLAGVIVLGIYPATTAMFSVMREWLRGNSDLPVFNTFSSYYKKDFWKSNHLGIYTSIIFLLIGIDLFYIQSEASKLMTWTHIPIFACILFFIFLLFYLFPVFAHYDLTVRSNYKQAFFIMLISPIQIIMMVICLVAFSIISFIFPALAFIFGLSFYSFITSWLASSSFKRLEANNKIKQTDL
>NZ_CP044545.1|WP_140461757.1|3497158_3497932_-|hypothetical-protein
MKLSTLTGAGLIGATVIAGTLVFNSGAAEKVMNNIEALKSKIVEFAQNEKSLVEKYNDLREEAQTKIADLEAQLKNNGEASDSEKEELQAEIKRLEDQLNLANAAIEGLEIQSDNAVKVANSHTITDADSLPGLDGDTVAEEKIATAEAHFYQGHTQVSINLKEDINIAPLAKGNIVVKFMDANDNTIQTKNKTWAGYLNDSQGNKYGKGLENNANYSNQLYAGNTYTTTLNKDNVAKVMITVTTNNNEVKTITKVK
>NZ_CP044545.1|WP_066106290.1|3498817_3499282_-|SsrA-binding-protein-SmpB
MPKGSGKVIGQNKKAYHDYFIEETYEAGIVLQGTEIKSIRNGRVNLKDSYARIINGEVFLMGMHISPYEQGNRYNHDPLRVRKLLLHNKEISKLIGSTKEQGYALVPLKLYLKNGFAKVLIGLGKGKKNYDKREDLKRKEAKREIERAFKERQR
>NZ_CP044545.1|WP_066106287.1|3499351_3499729_-|RidA-family-protein
MSKITIQTAKAPAAIGPYSQAIRVNGFIYTSGQLGLDPETGELKDGVKEQTHQAFKNIQAILNEEGLGLDQIVKTTVFLNDMNDFAAVNEVYATYFTGSFPARSAVEVARLPKDGLVEIEAIAVV
>NZ_CP044545.1|WP_140461758.1|3499866_3501249_-|cation:dicarboxylase-symporter-family-transporter
MDTTLVIINILILLALVGVLFYMQKKHVSFAKRVFTGLGLGILLGVFLQFAFDPESAVLADTKNWYSIVGTGYVSFLKMIVMPLIVVSIISAIIRIKGQAGVGKISFSIIGILVLTTAIAAAVGIGSALTFDLSADHLESGEAEEARSAQLEETMVQVENQSFPERILQVIPTNPFLDLTGQRPTSTIATVIFAAFVGIAAIGVRRKAPAEFETFEKIINALYKIVMRIVTLILRLTPYGILALMATTIANTNVQGIIELSTFVIASYVALIVMFLIHLVILFFSGLNPMQYVKKMGPLLTFAFTSRSSAAAIPINIETQTKQFGNSEGIANFSSSLGASIGQNGCAGIYPAMLAVMIAPDPLDPVFLIQLVIIVAISSFGVAGVGGGATFAALIVLSSMNLPIGIAALLISVEPLIDMGRTALNVSGSATAGLVTGRMTGELNKEVYNGKMVEMNSLEA
>NZ_CP044545.1|WP_140461759.1|3501451_3503827_-|ribonuclease-R
MDDMIRQHVEKLYSYMKEEAYKPMTVQELEAAMGVEDSGDFKDFVKALVYMEEHGQIVRTRSDRYGLPERMNLVKGKVSGHAKGFAFVLPEEKGMDDIFIPPHELNNAMHGDIVMVRVSSQSSGQRREGTIVKIIERGVQNVVGTYTETRGIGFVIPDDKKMANDIFIPNEAKNGAVEGHKVVVKITNYPEGRMSAEGEVITILGHKNDPGVDILSIIHKFGLPGEFPEDALEQANQTPEVIDEKDLANRRDLRDETIVTIDGADAKDLDDAVTVTRLDNGNYKLGVHIADVSHYVTEGSPIDKEAAERATSIYLVDRVIPMIPHRLSNGICSLNPRVDRLTLSCEMEIDSEGTVVSHEIFQSVIKTTERMTYSDVNEILVDKNAELIERYEPLVPMFEEMEKLAEILREKRMRRGAIDFDFKEAKILVDENGEPTDVVLRTRSVAEKLIEEFMLAANETVAEHFHWMDVPFLYRIHEDPNEEKLRKFFDFIVNFGYIVRGTANSIHPRALQEIIEAVQGKPEEMVVSTVMLRSMKQAKYDPESLGHFGLSTDYYTHFTSPIRRYPDLIVHRLIRTYLINGDLSKETQEKWNERLGEIAQHTSSMERRAVDAERETDDLKKAEYMEDKVGEEFDGIISSVTNFGMFVELSNTIEGLVHVSYMTDDYYHFDDRQYAMIGERTAKVFRIGDEITVKVINVNKDERTIDFEIVGMKDNRERVSGEKRIFRAEPGKNRRKDSSKPQGGNGDKRGPKGQGKGKPGESSDKKGPRKKKKFYENAPAAKRKSGKKKKR
>NZ_CP044545.1|WP_139892225.1|3503868_3504609_-|alpha/beta-fold-hydrolase
MKLTQPKPFTFEGGNRAVLLLHGFTGNSADVRMLGRYLESRGYTCHAPQYKGHGVPPEELVEFGPTDWWKDCMKAYDRLRAMGHKEIAVAGLSLGGVFSLKLGYTVPVKGIVTMCSPMYIKSEKVMYDGVLEYARQYKKREGKSQEQIEAEMNCFRPMNTLQALQELIGNVRDHVNQVDVPLFVAQARHDHMINTDSANIIYNSAITEQKTLKWYEESGHVITLDKERDQLHQDVFAFLESLDWAN
>NZ_CP044545.1|WP_066106882.1|3504749_3504983_-|preprotein-translocase-subunit-SecG
MHTTLMVLLVITCISLIVVVLLQSGKSAGLSGAISGGAEQLFGKQKARGLDLYLHRATIVLSVLFFVLTILVSFFAK
>NZ_CP044545.1|WP_066106276.1|3505146_3505680_+|hypothetical-protein
MFTDWLYKVNYINMIGFIFGSLMMFFGWNAPLMGALLLAAGVLLIISKLNGRPFIYFMTYFVHLCLIGLLIFELLSIEWLSINPILFVVCIAALISLIAVIIRSNTSTLSLFWLALHILILAYGFIGEGTFWSTVWSPGSVQVVFKTFYSILIAFFLIGVFLDRFQNELRREYRDRN
>NZ_CP044545.1|WP_140461760.1|3505770_3506376_-|nitroreductase-family-protein
MTNTNEFLSAIEKRRSLYAISNEKVISEERVEEIVKFAVKHTPSAFNSQSARVVVLFGEQSNKFWSITTETLRKVVPAENFGGTQEKMDMFNAGYGTVLFFEDQSVIEGLQSQFDLYADKFPIWSNEASGMLQLVVWTALEAEGLGATLQHYNPLIDEEVKATWNIPASWRLSAQMPFGKPVAPAGENQFNPIEDRVKVYK
>NZ_CP044545.1|WP_140461761.1|3506418_3507267_-|VOC-family-protein
MNFHQKTNTFVKSLELKILNMERSLAFYENIIGFKVLEKEENRTVLTADGETPLLTLIQPENVIPKEAHKTGLYHFALLLPSRADLGSFLHHIAKINYPLGASDHHVSEALYLQDVDGNGIEIYADRPASSWIWKDKEVHMVTEPLKAEEVLAAGEDTMWKGLPSDTAMGHIHLHIGNLELAEEFYCQGLGFDVVTRYGNQALFLSTGGYHHHIGLNVWNGRNIPAASKESVGLQTFTIHYPNHEQREEVISRLNNIGAEVREENGIWVTTDPFGLSIRLSV

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP044545_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044545_4

3749261-3749388

Orphan

Consensus_repeat	Method
ATAGGTGCCTGATAGGTACCCCAGAGCTCCTTTCCCCCACCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044545_4

>merge|NZ_CP044545|4|3749261-3749388|CRISPRCasFinder
ATAGGTGCCTGATAGGTACCCCAGAGCTCCTTTCCCCCACCTTTCACATACCTTTGACCGACCTTTACCCCGGTATAGGTGGGGCATAGGTGCCTGATAGGTACCCCAGAGCTCCTTTCCCCCACCTT

>NZ_CP044545|4|4|3749261-3749388|CRISPRCasFinder
ATAGGTGCCTGATAGGTACCCCAGAGCTCCTTTCCCCCACCTT	TCACATACCTTTGACCGACCTTTACCCCGGTATAGGTGGGGC
ATAGGTGCCTGATAGGTACCCCAGAGCTCCTTTCCCCCACCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044545.1\|WP_139892085.1\|3743519_3744074_-\|NADH-quinone-oxidoreductase-subunit-J	unknown	unknown	gnl\|CDD\|235844
NZ_CP044545.1\|WP_066109304.1\|3754464_3754989_-\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NZ_CP044545.1\|WP_066109752.1\|3755132_3755339_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|180739
NZ_CP044545.1\|WP_066109283.1\|3748649_3749030_-\|NADH-quinone-oxidoreductase-subunit-A	unknown	unknown	gnl\|CDD\|169084
NZ_CP044545.1\|WP_140461889.1\|3741276_3743142_-\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
NZ_CP044545.1\|WP_066109280.1\|3748146_3748659_-\|NADH-quinone-oxidoreductase-subunit-B	unknown	unknown	gnl\|CDD\|235797
NZ_CP044545.1\|WP_066103293.1\|3745524_3746625_-\|NADH-quinone-oxidoreductase-subunit-D	unknown	unknown	gnl\|CDD\|183437
NZ_CP044545.1\|WP_066109289.1\|3749587_3749995_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_CP044545.1\|WP_066109306.1\|3756114_3756495_-\|ATP-synthase-subunit-I	unknown	unknown	gnl\|CDD\|377159
NZ_CP044545.1\|WP_140461888.1\|3739762_3741280_-\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|235622
NZ_CP044545.1\|WP_066103287.1\|3744073_3744490_-\|NADH-quinone-oxidoreductase-subunit-NuoI	unknown	unknown	gnl\|CDD\|235637
NZ_CP044545.1\|WP_140461890.1\|3746631_3748146_-\|NADH-quinone-oxidoreductase-subunit-C	unknown	unknown	gnl\|CDD\|236081
NZ_CP044545.1\|WP_066109298.1\|3752398_3753907_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_CP044545.1\|WP_139892084.1\|3744523_3745525_-\|NADH-quinone-oxidoreductase-subunit-NuoH	unknown	unknown	gnl\|CDD\|235692
NZ_CP044545.1\|WP_066109291.1\|3750023_3751445_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP044545.1\|WP_066109294.1\|3751505_3752363_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_CP044545.1\|WP_066103278.1\|3743208_3743523_-\|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl\|CDD\|180218
NZ_CP044545.1\|WP_066109301.1\|3753931_3754468_-\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|365949
NZ_CP044545.1\|WP_066109305.1\|3755396_3756107_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP044545.1\|WP_140461891.1\|3756921_3759111_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173800

Protein	Function_ID	Function_description	E-value
NZ_CP044545.1\|WP_139892085.1\|3743519_3744074_-\|NADH-quinone-oxidoreductase-subunit-J	gnl\|CDD\|235844	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J.	2.46388e-45
NZ_CP044545.1\|WP_066109304.1\|3754464_3754989_-\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	3.01357e-45
NZ_CP044545.1\|WP_066109752.1\|3755132_3755339_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|180739	PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated.	1.81185e-18
NZ_CP044545.1\|WP_066109283.1\|3748649_3749030_-\|NADH-quinone-oxidoreductase-subunit-A	gnl\|CDD\|169084	PRK07756, PRK07756, NADH-quinone oxidoreductase subunit A.	6.03911e-69
NZ_CP044545.1\|WP_140461889.1\|3741276_3743142_-\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NZ_CP044545.1\|WP_066109280.1\|3748146_3748659_-\|NADH-quinone-oxidoreductase-subunit-B	gnl\|CDD\|235797	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB.	1.37041e-104
NZ_CP044545.1\|WP_066103293.1\|3745524_3746625_-\|NADH-quinone-oxidoreductase-subunit-D	gnl\|CDD\|183437	PRK12322, PRK12322, NADH-quinone oxidoreductase subunit D.	0
NZ_CP044545.1\|WP_066109289.1\|3749587_3749995_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	2.25195e-51
NZ_CP044545.1\|WP_066109306.1\|3756114_3756495_-\|ATP-synthase-subunit-I	gnl\|CDD\|377159	pfam03899, ATP-synt_I, ATP synthase I chain. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI. AtpI is a Ca2+/Mg2+ transporter.	1.96789e-07
NZ_CP044545.1\|WP_140461888.1\|3739762_3741280_-\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|235622	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed.	3.91002e-166
NZ_CP044545.1\|WP_066103287.1\|3744073_3744490_-\|NADH-quinone-oxidoreductase-subunit-NuoI	gnl\|CDD\|235637	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI.	8.35985e-52
NZ_CP044545.1\|WP_140461890.1\|3746631_3748146_-\|NADH-quinone-oxidoreductase-subunit-C	gnl\|CDD\|236081	PRK07735, PRK07735, NADH-quinone oxidoreductase subunit C.	3.74214e-74
NZ_CP044545.1\|WP_066109298.1\|3752398_3753907_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_CP044545.1\|WP_139892084.1\|3744523_3745525_-\|NADH-quinone-oxidoreductase-subunit-NuoH	gnl\|CDD\|235692	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH.	4.71354e-142
NZ_CP044545.1\|WP_066109291.1\|3750023_3751445_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP044545.1\|WP_066109294.1\|3751505_3752363_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	5.56212e-155
NZ_CP044545.1\|WP_066103278.1\|3743208_3743523_-\|NADH-quinone-oxidoreductase-subunit-NuoK	gnl\|CDD\|180218	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK.	1.83501e-40
NZ_CP044545.1\|WP_066109301.1\|3753931_3754468_-\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	1.41009e-54
NZ_CP044545.1\|WP_066109305.1\|3755396_3756107_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	4.38758e-70
NZ_CP044545.1\|WP_140461891.1\|3756921_3759111_-\|S8-family-serine-peptidase	gnl\|CDD\|173800	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.78987e-77

>NZ_CP044545.1|WP_066109283.1|3748649_3749030_-|NADH-quinone-oxidoreductase-subunit-A
MRLASLHWYQNNYIIVLVFLCLGILLPIVALSLGKLLRPHKPTDAKGTTYESGLEPFHDSRVQFNVRYYIFALLFVLFDVETVFLYPWAVAYEKLGVFALIEMLIFVLMLVLGLLYAWKKKVLKWN
>NZ_CP044545.1|WP_066109280.1|3748146_3748659_-|NADH-quinone-oxidoreductase-subunit-B
MELKLEELSPREKDELQRTIFLATLEQVKGWARGNSLWPLTFGLACCAIEMMAVGSSHYDVDRFGSFFRTSPRQSDVMIVSGTVTKKMAPILRRLYDQMPEPKWVIAMGSCATAGGPYVRSYSVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIKYEAKTGKKVL
>NZ_CP044545.1|WP_140461890.1|3746631_3748146_-|NADH-quinone-oxidoreductase-subunit-C
MSEKDLSQQKKEAAEKAKEAAKQKLAEKQSSEQSPKADPHQDKDDIALAKAKAAAAAKAKAAAIAKQKRTEGEANSESTTPPEETEKEKAIALAKAKAAAAAKAKAAALAKQKRTEGEANSESTTPPEETEKEKAITLAKAKAAAAAKAKAAAIAKQKRTEGEANSESTTPPEEKEKAIALAKAKAAAAAKAKAAAIAKQKRTEGEANSESTTPPEETEKEKAIALAKAKAAAAAKAKAAALAKQKRTEGEANSESTTSPEETKKEKEIAIAKAKAAAATKAKAAALAKQKRTEGDTESTKPLEETEKAKAKAIAVAKAKAAAAAKAKSKLAEKTSAPASEEAPSPNQSLLDTYRTILETNIGPEILEDAYINRLSKDVPTIVLKKEAYYRTLEFLRKNEQLKFNYLSEIHGTDFVTHFEVYLYLYSFPYQREIVIKVKVDREQPELESVVPLWIGANWAESEIYDLLGITFTGHPNLERILLGEDWVGHPLRKDYEQYDDVEV
>NZ_CP044545.1|WP_066103293.1|3745524_3746625_-|NADH-quinone-oxidoreductase-subunit-D
MIRTEEMLLNVGPQHPSTHGVLRIVVKIDGEIITEAKPVIGYLHRGTEKLAENLQYTQIIPYTDRLDYLSAMTNNYVLCHAVETMMKIEVPDRAEYLRVMAMELGRISSHLVAWGTFVLDLGATSPFIYAFREREMILNFLNELSGARLTFNYMRVGGVKWDAPDGWIQKVAEFIPYMREQLQGYRQLVSGNEIFLTRVKGIGIYSAEEAIAYSLSGPNLRCTGVKQDLRKTAPYSIYDRFDFKIVTRETGDVLSRYEIRLDEIEESLKILEQCIEQFPSDGPVMAKVPKIIKPPKGEGYVRIESPRGEIGCYIASEGKKEPYRLKFRRPSFYNLQILPKLLKGENIANLVAILGAIDIVLGEVDG
>NZ_CP044545.1|WP_139892084.1|3744523_3745525_-|NADH-quinone-oxidoreductase-subunit-NuoH
MIQNLLTSTPSWSSFAVFAGSAIVLMFVILGFVTFAILAERKVMGYMQLRHGPNQLGGKWGLLQTVADVLKLLLKEDTIPDQADKPLFKLAPFIAFAPAMVVVATLPFTEALQFADLGVGLLYYIAVSGVSTVGILAAGWASNNKYSLMGGMRAGAQMISYEVPLVMSVIGIVLLTGSLNLNDIVESQAGVWNIIRQPIAFVVFLIAAVAELNRVPFDLSEAESELVAGFHVEYSGFRWAFFMLSEYVYMFAMATLTVILFFGGWQPLPFLDWIPGAVWFSLKWFAVTFFLVWIRVTFPRLRADHLMEFGWKVLLPVALLNIFVTALVIKIIA
>NZ_CP044545.1|WP_066103287.1|3744073_3744490_-|NADH-quinone-oxidoreductase-subunit-NuoI
MFGLAKGLKYTLKNLSREKVTYDYPNESIMVPDRFRGIQKFYPEKCIVCNQCMNICPTDCIHLTGKKHPDSTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYSRDELFKNLEWLDENDENIRKVNQ
>NZ_CP044545.1|WP_139892085.1|3743519_3744074_-|NADH-quinone-oxidoreductase-subunit-J
MSGEMTAFIVLGLIAICGAVLMIHLTKVMHMMVSLVFTFISIAGIYVLLSAEFVAVVQIMIYSGAITIIMLFGIMLTNHRDPSVTKAGMWRKAFVLIGVLGFAGAVYAGIYNLNFAETVNTAGGETDLVSQSSTLHLNNTEKIGIAIYTKFVIPFELVSVLLLVALVGAVVLAKKDDQKEGEEK
>NZ_CP044545.1|WP_066103278.1|3743208_3743523_-|NADH-quinone-oxidoreductase-subunit-NuoK
MTSVPLPAYLTLALTLFCIGLYGALTKRNIIIVLVSIELMLNAVNINLVAFSKLGPAPAITGQVFALFAIAVAAAEAAVGLAILFSLYRNRKTVNIDEMDTLKN
>NZ_CP044545.1|WP_140461889.1|3741276_3743142_-|NADH-quinone-oxidoreductase-subunit-L
MMKLVWVIPLFPLLSFVLLLVVGKRLKASSAYIGIGFTLLTFLFSLLVLIGRLQSPDYRSVVDWLRIGENQVTMGVEVNQLNALMLVIVSLVSLLVHIYSIGYMQGDGRVPVFFAYLGLFTFAMLGLVVSPNLLQLYIFWELVGLGSFLLIGFYFYKDAARRAAKKAFIMTRIGDIGLLIGIILLFWKTGSFEYEAIFSAVENGVLTSGWATATALLIFIGAIGKSGQFPLHTWLPDAMEGPTPVSALIHAATMVAAGVYLVATMFPLFAASETAMLTVAIVGAFTAIFAAAIATVQKDIKRILAYSTVSQLGYMMLALGTAGYVAGVFHLTTHAFFKALLFLAAGSVIHAVHTQNIDEMGGLWKKLRRTGPLFLIGTLALTGFPLLSGFFSKDEILVSVWESGHIVLFIVALLTSILTAFYMFRLFFIVFWGPSRNETKDVQESPGSMTAPMMILAVLSIFAGYVNTPWFGTFLGDWLAEGNRYLGHVHIEGPIWIPIVAILAFLIGCGTAWLIYGKRKSVGVEKEVPGPLYQMLANKFYVDEFYEFTIVRMVKGFGMILSWVEKYILQGIVSSVSYLINFSATKGANAHNGKMQIYGTIALIGLAAVLVIFAWTGGYVR
>NZ_CP044545.1|WP_140461888.1|3739762_3741280_-|NADH-quinone-oxidoreductase-subunit-M
MNPYILSLLVFSPLLGIAGLLFVSKNNENALKRLGILGTIPPLILTIYLYSEYLSGTKFTVFSVFHKWFQLGGGGVRQSQLYAIPFELSLNGISLVMVILTAILSTLAALASVLQIKKEWKGYFILLLLLEVGMLGVFLSQNLILFFLFFEVTLVAMFFLIGKWGYFDKEKAAFSFLIYNGLGSCILLFVIMVLFARTGTANIEILGQILSVGGQTLLAPISTELKYILFTGIVIAFGIKLPIFPFHSWMLRVHVQAPPAIVMLHAGVLLKIGAYGLIRFGMGLFPGEFKEMAFWIALLGVINFLYGAWLALQQTDFKLVLAYSSISHMGIVLMGLGALNTAGIQGALFQVVSHGLIAALLFLLVGFLYERVGTTNLKELGGLAKSIPVFSGILLAGGMASLGLPGMSGFISEFMAFMGLFKTEPILAAIGTLGIVLTAVYVLRAVLNMTFGAPKNELSIADLKPNEAVLAFVLLGFIILIGVCPAILEGPLQAEIADMMTGIGR
>NZ_CP044545.1|WP_066109289.1|3749587_3749995_-|F0F1-ATP-synthase-subunit-epsilon
MRTIKVSVVTPGGPVLDEEVEMVSTKAKTGELGILAGHIPMVAPLDIGSVRLKTGNNTEWVAVSGGFMEVNGEEVTILAQSAERAEDIDTARAKQAKARAERRLQDRQVEIDAHRAELALKRALNRLDIAEQRQR
>NZ_CP044545.1|WP_066109291.1|3750023_3751445_-|F0F1-ATP-synthase-subunit-beta
MNIGRVTQVMGPVVDVRFENGKLPEIYNALKINISKGAPADEAEYLTLEVALHLGDDTVRTIAMASTDGLVRNAEVIDTGAPISVPVGDITLGRVFNVLGEKIDLDAPLEGNYQKDPIHREAPKFEELSTEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHGGISVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDAQGQDVLFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNVGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLSEMGIYPAVDPLASTSRALSPEIVGEEHYEVARSVQSTLQRYRELQDIIAILGMDELGEEDKLVVARARRIQNFLSQNFHVAEQFTGQKGSYVPVKETVRGFKEILDGKYDNLPEDAFRLVGRIEDVVEKAKQMGVEA
>NZ_CP044545.1|WP_066109294.1|3751505_3752363_-|F0F1-ATP-synthase-subunit-gamma
MASLRDIDARIKSTKKTSQITKAMQMVSASKLNRAEANAKAFVPYMEKIQEVVASIANGSSDASHPMLVTRPVKRTGYLVITSDRGLAGPYNSSVLRKVYQTINERHKSPDEYGIIVLGRVGSEFFRIRGMNVIQEMVGLSDQPSFDDIKEITASTVKLFADETVDEIYMYYNHFISAISQEVTETKLLPLGSVESDAVATLYEFEPNQEEILEVLLPQYAESLIYGALLDGKASEHASRMTAMKSATDNASELIGSLTLTYNRARQAAITQEITEIVGGAAALE
>NZ_CP044545.1|WP_066109298.1|3752398_3753907_-|F0F1-ATP-synthase-subunit-alpha
MSIRAEEISALIKKQIEGYQSDIEMSEVGTVIVVGDGIARVHGLDNVMSGELLEFSNGVVGMAQNLEENNVGVIILGPFRDIKEGDEVRRTGRIMEVPVGEAIIGRVVNPLGQPLDGMGPIATTATLPIENNAPGVMDRKSVHEPLQTGLKAIDALVPIGRGQRELIIGDRQTGKTSVAIDTILNQKDENMICIYVAIGQKESTVRGTVETFRKHGALDYTIVVSASASQPAPLLYLAPYSGVTMGEYFMRQGKHVLVVYDDLSKQAAAYRELSLLLRRPPGREAFPGDVFYLHSRLLERAAKLNDTLGAGSITALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAGLSVSRVGGSAQIKAMKKVAGTLRLDLASFRELEAFSQFGSDLDKATQAKLNRGQRTVEVLKQDLHKPLRVEQQVLILYCLTRGFLDDIPLADIRRFEAEIIEWTARNHNELFEHIRTTGDLPKEEDMKAAIAEFKKQFVVSE
>NZ_CP044545.1|WP_066109301.1|3753931_3754468_-|F0F1-ATP-synthase-subunit-delta
MSNTVVAKRYADALFQIAKEDNQIDRLEGEMRTLKEVFLSNKELTLFLEHPKVSMESKKDAIRTAFATMSPSIQNLLMILVDRHREDIVATLADEFILLVNEYTGVVDAKVYSVRPLTKQEQEGISKVFAQKIGKQALRIENIVDSSLLGGIKLRIGNRIFDGTVSGKLERLERRLLG
>NZ_CP044545.1|WP_066109304.1|3754464_3754989_-|F0F1-ATP-synthase-subunit-B
MLFNNLVLGAAAHSGLNTGDIIFQLVAFIILMLLLKKFAFGPLMGIMKQREEHVASEIEVAEKNRAEAAALLEEQRTMLKEARQESLSLIEEAKKHGEKQREEIIVVARQEAERVKESAKREIEQQKEQAMVQLREQVASLSVLIASKVIEKELSEADQQKLINDYIQEAGEER
>NZ_CP044545.1|WP_066109752.1|3755132_3755339_-|F0F1-ATP-synthase-subunit-C
MGVIAAAIAIGLAALGAGIGNGLIVSRTVEGIARQPEARGMLQTTMFIGVALVEAIPIIAVVIAFMVM
>NZ_CP044545.1|WP_066109305.1|3755396_3756107_-|F0F1-ATP-synthase-subunit-A
MNHGAPTVELMGLTFNLGNVLMITVASVIVFLIAVLSTRKLAVKPSGMQNFMEWVIDFVRNIINSNMDWNTGGRFLVLGTTLIMYIFVSNMLGLPFSVTYNGDLWWKSPTADPVVALTLAVMIVVLTNFYGIKMRGFKGYSKNFVSPMPFLFPLKIIEEFANTLTLGLRLFGNIYAGEILLSLLAGSLATDFWSSALAIGPTIVWQGFSIFIGAIQAFIFTMLTMVYMAHKVSEDH
>NZ_CP044545.1|WP_066109306.1|3756114_3756495_-|ATP-synthase-subunit-I
MLEVHIVFRRYLRYTFTLLSIYVILWGVTPYKTEALGMTLGSIIGIYNIWLLSRKTAQLGEKVLEGSSMKSLGTISRMAAAVLAVAIAMRYPDQFNVFFVVLGLMTGYLVIMIDLTIHNIRRGEKR
>NZ_CP044545.1|WP_140461891.1|3756921_3759111_-|S8-family-serine-peptidase
MKQILIGAFIFIQLIVYAPHSSAEDIEVVMIETVKDTSAHRVAKELIEKYPAIKPRYYFNLVCNGFSASVPSILIPRLKKEESVSAIFLSGPIKATIKKNSLPKGQPQLQFNQPIQATGKGVKVGVIDTGIDYRHPDLKANYKGGYDLVDQDEDPMETMGSSKKATIHGTHVAGIIAANGKMKGIAPEASIYAYRALGPGGYGTTDQVIASIERAVKDKMDIINLSLGDTMNGPDLPTSKALDKVVKKGIVAVVANGNDGPGIWTVGTPGTSGGAISVGASSDAGKSKRLNFTKPWADIDFQLTAGSPEWDFSHSMIMTYAGLGKRENYENINAKNKIVLVERGVISFKDKVKNAVNAEALGVIIFNNEPGELSASLEMNSKIPVITVSQKDGRKMKKALENGQLTCRTIDIEEKEKLASFSSRGPVIHSIAIKPDVVAPGVRIESTIPGGTYLSLQGTSMAAPYVAGVCALIKEVHPDWSPEKIKSALMTSAISLKNDKDEIYHTFEQGAGRVNVKDALQEDTFLAPSSVTFGMATNGRMYKANIVVENRSSRKKRYYFSIPRKERFMTWKLPLAFVLEGGQKKKLEVQLELDNWKEKSELDDGYLYLNEAGRNKVRKIPYIFAMTKPDYPIAEGVEVVQEKGDRKMEISVYLPFGADSVRFTLYNADSLLYIKDLVEVKGVKRGVLKQKVDLPENILSNYYEIVTEVEKDHQKVVLKNTNYLKFQLE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044545_2	2.1\|1033689\|37\|NZ_CP044545\|CRISPRCasFinder	1033689-1033725	37	NZ_CP012877	Weissella cibaria strain CH2 plasmid pMKC04, complete sequence	3327-3363	6	0.838
NZ_CP044545_2	2.1\|1033689\|37\|NZ_CP044545\|CRISPRCasFinder	1033689-1033725	37	NZ_CP012877	Weissella cibaria strain CH2 plasmid pMKC04, complete sequence	8158-8194	6	0.838
NZ_CP044545_2	2.1\|1033689\|37\|NZ_CP044545\|CRISPRCasFinder	1033689-1033725	37	NZ_CP012877	Weissella cibaria strain CH2 plasmid pMKC04, complete sequence	3147-3183	7	0.811
NZ_CP044545_2	2.1\|1033689\|37\|NZ_CP044545\|CRISPRCasFinder	1033689-1033725	37	NZ_CP012877	Weissella cibaria strain CH2 plasmid pMKC04, complete sequence	7978-8014	7	0.811
NZ_CP044545_2	2.1\|1033689\|37\|NZ_CP044545\|CRISPRCasFinder	1033689-1033725	37	NC_014367	Pediococcus pentosaceus plasmid pPS1, complete sequence	1855-1891	7	0.811

1. spacer 2.1|1033689|37|NZ_CP044545|CRISPRCasFinder matches to NZ_CP012877 (Weissella cibaria strain CH2 plasmid pMKC04, complete sequence) position: , mismatch: 6, identity: 0.838

ccaagaaattggcgaaaagggtggagaagccaccaag	CRISPR spacer
caaagaaattggagaaaagggtggagaagccacttcc	Protospacer
* ********** ********************.

2. spacer 2.1|1033689|37|NZ_CP044545|CRISPRCasFinder matches to NZ_CP012877 (Weissella cibaria strain CH2 plasmid pMKC04, complete sequence) position: , mismatch: 6, identity: 0.838

ccaagaaattggcgaaaagggtggagaagccaccaag	CRISPR spacer
caaagaaattggagaaaagggtggagaagccacttcc	Protospacer
* ********** ********************.

3. spacer 2.1|1033689|37|NZ_CP044545|CRISPRCasFinder matches to NZ_CP012877 (Weissella cibaria strain CH2 plasmid pMKC04, complete sequence) position: , mismatch: 7, identity: 0.811

ccaagaaattggcgaaaagggtggagaagccaccaag	CRISPR spacer
cgaaaaaattggagaaaagggtggagaagccacttcc	Protospacer
* **.******* ********************.

4. spacer 2.1|1033689|37|NZ_CP044545|CRISPRCasFinder matches to NZ_CP012877 (Weissella cibaria strain CH2 plasmid pMKC04, complete sequence) position: , mismatch: 7, identity: 0.811

ccaagaaattggcgaaaagggtggagaagccaccaag	CRISPR spacer
cgaaaaaattggagaaaagggtggagaagccacttcc	Protospacer
* **.******* ********************.

5. spacer 2.1|1033689|37|NZ_CP044545|CRISPRCasFinder matches to NC_014367 (Pediococcus pentosaceus plasmid pPS1, complete sequence) position: , mismatch: 7, identity: 0.811

ccaagaaattggcgaaaagggtggagaagccaccaag	CRISPR spacer
caaagaaaatggtgaaaagggtggagaagccacttcc	Protospacer
* ****** ***.********************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

15987 : 25159

Klosneuvirus(14.29%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066103306.1\|15987_17454_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-97	41.3
WP_151675494.1\|17578_18901_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	7.1e-28	30.0
WP_066103313.1\|19255_20536_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-93	52.1
WP_066103316.1\|21035_21710_-	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	3.5e-23	32.2
WP_066103319.1\|21706_22345_-	AAA family ATPase	A0A127AVX2	Bacillus_phage	4.5e-20	29.5
WP_066103321.1\|22488_22986_+\|tRNA	tRNA adenosine(34) deaminase TadA	A0A2H4PQS8	Staphylococcus_phage	1.2e-09	31.2
WP_151675495.1\|23470_25159_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	3.0e-55	37.8

DBSCAN-SWA_2

348507 : 356883

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066108525.1\|348507_349800_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.2e-18	31.4
WP_139892762.1\|349906_350626_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FUQ7	Synechococcus_phage	1.8e-46	42.6
WP_066108519.1\|350618_350873_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_066108516.1\|350869_351553_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_140462127.1\|351536_353771_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.0e-164	41.6
WP_139892760.1\|353746_355165_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.1e-49	33.0
WP_140462128.1\|355207_356233_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.5e-65	44.6
WP_066108508.1\|356301_356883_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.7e-30	39.3

DBSCAN-SWA_3

1114480 : 1122445

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140461199.1\|1114480_1115203_+	SDR family NAD(P)-dependent oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.3e-12	28.2
WP_140461200.1\|1115202_1116237_+\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
WP_140461201.1\|1116233_1116587_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_140461202.1\|1116837_1117401_+	FAD-binding protein	G3MA85	Bacillus_virus	2.6e-11	40.5
WP_140461203.1\|1117590_1117926_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_077247951.1\|1118117_1118891_-	NAD-dependent protein deacylase	A0A068EPD4	Bacillus_phage	3.7e-45	40.8
WP_140461204.1\|1119055_1119592_+	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	2.8e-52	56.4
WP_140461205.1\|1119802_1120333_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_140461206.1\|1120650_1121772_+	AAA family ATPase	A0A0C5K935	Enterococcus_phage	4.8e-25	26.5
WP_140461207.1\|1121758_1122445_+	nicotinamide mononucleotide transporter	U5J9C5	Bacillus_phage	1.6e-15	33.9

DBSCAN-SWA_4

1941311 : 1947905

Acinetobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139891926.1\|1941311_1942421_-	hypothetical protein	A0A172Q0S8	Acinetobacter_phage	8.8e-48	35.7
WP_140461469.1\|1942533_1943922_-	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	3.7e-11	27.5
WP_140461470.1\|1943923_1945132_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_140461471.1\|1945212_1945998_-	TerC family protein	A0A068EP98	Bacillus_phage	6.8e-79	63.3
WP_066103766.1\|1946072_1946651_-	TerD family protein	A0A2I7QY15	Vibrio_phage	4.1e-20	33.2
WP_066103765.1\|1946705_1947287_-	TerD family protein	K4JRX3	Caulobacter_phage	9.1e-28	37.9
WP_066103763.1\|1947320_1947905_-	TerD family protein	K4JRX3	Caulobacter_phage	4.8e-21	31.5

DBSCAN-SWA_5

2397954 : 2404734

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140461596.1\|2397954_2399127_-	chorismate synthase	A0A291AU41	Pandoravirus	5.7e-45	37.9
WP_140461597.1\|2399288_2400092_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_066107459.1\|2400284_2400731_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.2e-27	42.2
WP_066107464.1\|2400820_2401783_-	heptaprenyl diphosphate synthase component II	A0A1V0SE37	Indivirus	1.1e-06	24.0
WP_066107467.1\|2401816_2402530_-	demethylmenaquinone methyltransferase	A0A097BYE1	Leuconostoc_phage	1.8e-06	27.9
WP_066107470.1\|2402575_2403334_-	hypothetical protein	NA	NA	NA	NA
WP_066107475.1\|2403461_2403689_-	trp RNA-binding attenuation protein MtrB	NA	NA	NA	NA
WP_066107479.1\|2403721_2404288_-	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	2.7e-45	53.1
WP_049670554.1\|2404461_2404734_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	5.9e-30	78.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044545

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection