CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044971	Ochrobactrum anthropi strain T16R-87 chromosome 2, complete sequence	1 crisprs	csa3,cas3	0	0	2	0
NZ_CP044970	Ochrobactrum anthropi strain T16R-87 chromosome 1, complete sequence	0 crisprs	csa3,DEDDh,WYL,RT	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044971_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044971_1

903321-903419

Orphan

Consensus_repeat	Method
GACTTCTTGGAAGTCCATGCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044971_1

>merge|NZ_CP044971|1|903321-903419|CRISPRCasFinder
GACTTCTTGGAAGTCCATGCCGCCACCCGCACCGCCTTGCGGTGCGAGCTTATTACCTGATGGGCGTGCTTTATAGACTTCTTAGAAGTCCATGCCGCC

>NZ_CP044971|1|1|903321-903419|CRISPRCasFinder
GACTTCTTGGAAGTCCATGCCGCC	ACCCGCACCGCCTTGCGGTGCGAGCTTATTACCTGATGGGCGTGCTTTATA
GACTTCTTAGAAGTCCATGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044971.1\|WP_010660987.1\|900082_901474_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP044971.1\|WP_029376217.1\|909825_910686_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|226236
NZ_CP044971.1\|WP_010660983.1\|897195_898326_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413
NZ_CP044971.1\|WP_006472506.1\|905148_905445_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP044971.1\|WP_010660993.1\|907846_908695_+\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NZ_CP044971.1\|WP_029927987.1\|899039_899495_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NZ_CP044971.1\|WP_029376216.1\|908736_909726_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP044971.1\|WP_010660999.1\|915617_916091_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP044971.1\|WP_010660989.1\|901988_902549_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP044971.1\|WP_010660996.1\|910993_913906_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NZ_CP044971.1\|WP_010661000.1\|916281_918012_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP044971.1\|WP_010660982.1\|895678_897187_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP044971.1\|WP_010660988.1\|901637_901895_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044971.1\|WP_010660992.1\|905685_907503_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227296
NZ_CP044971.1\|WP_029376218.1\|915054_915621_+\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NZ_CP044971.1\|WP_010660984.1\|898322_899018_+\|ATP-phosphoribosyltransferase-catalytic-subunit-HisG	unknown	unknown	gnl\|CDD\|237438
NZ_CP044971.1\|WP_010660981.1\|894949_895567_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP044971.1\|WP_151612757.1\|899578_899980_-\|DoxX-family-membrane-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP044971.1\|WP_010660997.1\|914160_914835_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044971.1\|WP_010660990.1\|902632_903028_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647

Protein	Function_ID	Function_description	E-value
NZ_CP044971.1\|WP_010660987.1\|900082_901474_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP044971.1\|WP_029376217.1\|909825_910686_+\|MipA/OmpV-family-protein	gnl\|CDD\|226236	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane].	3.71303e-73
NZ_CP044971.1\|WP_010660983.1\|897195_898326_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	3.61642e-156
NZ_CP044971.1\|WP_006472506.1\|905148_905445_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	8.43261e-53
NZ_CP044971.1\|WP_010660993.1\|907846_908695_+\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.00478e-94
NZ_CP044971.1\|WP_029927987.1\|899039_899495_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	2.18617e-27
NZ_CP044971.1\|WP_029376216.1\|908736_909726_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	8.83395e-153
NZ_CP044971.1\|WP_010660999.1\|915617_916091_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.19513e-63
NZ_CP044971.1\|WP_010660989.1\|901988_902549_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	2.7538e-33
NZ_CP044971.1\|WP_010660996.1\|910993_913906_+\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NZ_CP044971.1\|WP_010661000.1\|916281_918012_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.9889e-81
NZ_CP044971.1\|WP_010660982.1\|895678_897187_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	1.75606e-155
NZ_CP044971.1\|WP_010660992.1\|905685_907503_-\|hypothetical-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	3.22097e-13
NZ_CP044971.1\|WP_029376218.1\|915054_915621_+\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	7.97079e-47
NZ_CP044971.1\|WP_010660984.1\|898322_899018_+\|ATP-phosphoribosyltransferase-catalytic-subunit-HisG	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	3.8111e-133
NZ_CP044971.1\|WP_010660981.1\|894949_895567_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.7192e-43
NZ_CP044971.1\|WP_151612757.1\|899578_899980_-\|DoxX-family-membrane-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	4.61761e-21
NZ_CP044971.1\|WP_010660990.1\|902632_903028_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.17064e-41

>NZ_CP044971.1|WP_010660990.1|902632_903028_+|helix-turn-helix-transcriptional-regulator
MKPGDFKETSACRTVADILSRVGDKWTVLVVSYLGNHPMRFNELRRSVDGISQKMLTTTLRNLERDGFVTRTIFPTIPPKVEYELTEMGSDLLRPVRALGEWAIANEAKVMMARARYDASISGKAQIDAAE
>NZ_CP044971.1|WP_010660989.1|901988_902549_-|NAD(P)H-dependent-oxidoreductase
MSKLKVAVIVGSTREQRFAPVPAQWIAKLVAERPELDVEILDVADYPMGFYGDTSTTTAQAETADKWKNKLREFDAYILTAAEYNHAPTAVLKNAIDYGDWIQKPMGFVGYGGVGGARAVEQLRMIAVEMSSMSVKTGVHILFPDYLAVVKGENKLDDFPHLAEAAKNMLDQLVWWGKALKSARAV
>NZ_CP044971.1|WP_010660988.1|901637_901895_-|hypothetical-protein
MRKELPIATAPKDGRKITVVWTDEDDQRNESIAQYRTLAQLQAGGGQWDETDTGWWTFTDSKTQRKIEPTAWISETDNGDEEDDA
>NZ_CP044971.1|WP_010660987.1|900082_901474_-|class-II-fumarate-hydratase
MTATRTETDTFGPIDVPADRYWGAQTQRSLQNFKIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDEHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPVHPNDHVNMSQSSNDSFPTAIHVATAVEAVNRLYPAVEHLTKALQAKEESFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRIEQSLADVFLLAQGGTAVGTGLNAPIGFDTGFAEAVSEITGLPFKTAPNKFEALASHGAILNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEALTMVTTQVFGNQTTITVAASQGHFELNVFKPVIAYNVLQSIRILSDAMVSFADHCVEGIEPNLNRIKELLDRSLMLVTALAPAIGYDNAAKIAKTAHKNGTTLREEALASGLVSAEDYERLVRAERMIAPE
>NZ_CP044971.1|WP_151612757.1|899578_899980_-|DoxX-family-membrane-protein
MSSITPQSNGAVTLIARIFLSILFIFAGYGKLTAISGTAGYFAGLGLPVPTVTAVIVGLVEFVGGLAILVGFQTRIAAAIVGLFTIGATLVAHMDFSQGMNAMMAQKNLAIAGGLFILALHGAGSLSIDAKRG
>NZ_CP044971.1|WP_029927987.1|899039_899495_+|GFA-family-protein
MLRVAISQLELGTVQMNSVRKLIGRCTCEAVRFTVTDEFEYALNCHCSLCRRATGSAFKAFGGIKTHALEETNSKSSLMLVGNEIDHDVRCASCGSFLYSIVRGGEYVHVNYGVLAEEPKLKPSAHIFVGSKAPWYDILDDLPQFEENPPF
>NZ_CP044971.1|WP_010660984.1|898322_899018_+|ATP-phosphoribosyltransferase-catalytic-subunit-HisG
MSVTLALPSKGRLKEQTLAVLDKAGYKVILPDDSRNYRARVEGETDLDILFLSASEIARELGYGSVDLGVTGEDLVRETLAHSEERVAIEAELGFGHADVVVAVPEVWRDVTSMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLRANRLKVLEDGVILRSQACLVSARRSRENARVTEVATRIRKGLGG
>NZ_CP044971.1|WP_010660983.1|897195_898326_+|ATP-phosphoribosyltransferase-regulatory-subunit
MAGSSSSGVFNSLRATLGAREAELVEIPLIQPADPFLDMAGEDLRRRIFLTENENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQHRDGAAEFLQAGIEDLGASDEAASDARSIADALSCVRAAAPEAELEIVLGDQSVFAGMLKALGLPQGWRKKLLRSFGDANSMEQVLAELTGAQRRDPLPETLAGLVAEGDESGLARMLEAEMLEAGISPSAGRSPAEIARRLIEKEDLAVTRFPASALDLLKQFLETRVSLDSAAVTLRAFASEHALDLAAVLQKFEARSEAIVNAGIATKDIIYDASFGRPLDYYTGLVYEIRAPGVEKEGVLAGGGRYDRLLTMLGASENIPGVGFSIWLDRLQMLAGEKK
>NZ_CP044971.1|WP_010660982.1|895678_897187_+|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYDLYGFEPVETPLVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARYVAENYESLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADTMERLGISRGDYAIRVNNRKVLDGVLDAIDLEGEGNAVKRLNVLRAIDKLDKFGPEGVRLLLGKGRLDESGDFTKGAELTDDAIEKVLAFTAAGGATGVETIANLRAVVAGNAKGEEGVTELADMQVLFSAGGYDGRVKIDPSVVRGLEYYTGPVFEAELQFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGISIGVSRLMTALKNLGKLDVSDVVGPVVVLVMDRDTESLGRYQKMVSDLRQAGIRAEMYVGGSGMKAQMKYADRREAPCVIIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWRESRPAQITAKENGLIDAVREILASQARDRAEQSK
>NZ_CP044971.1|WP_010660981.1|894949_895567_+|LysE-family-translocator
MDLVSLLAFAGILVVAAGTPGPNVGALVARVISRGHKGVFPFMFGLWLGDAIWLSLAVWGLAALANTFHTAFLILKYVGVAYLIYLSWKMWIAPVDEVADENAIPRQGEAGKLFLSALAITLGNPKIMVFYLAILPTVVDITHVSLVGWAELLVVMFTVLAAVDTAWVVLAAQARRFLRSPRMMRIANRTSAGMMAGAAVAIATR
>NZ_CP044971.1|WP_006472506.1|905148_905445_-|co-chaperone-GroES
MADIKFRPLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEIVAVGAGARDEAGKLIALEVKAGDKVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>NZ_CP044971.1|WP_010660992.1|905685_907503_-|hypothetical-protein
MSLRFAKDERGNFAMIMALVLVPLLLAGMVAVDSANLMRVRNNVQASLDAAALAVGRRFSTGESQTVVQIYGAQVFTANLTALSADAVNFDVAFPKDKTTDQQIQATAGFTYKSLFGVIASRLTGDDWDQNQYTLSSSVRLKNTIEVALVLDNSRSMDETRSGSTKKRIDLLKEAASQLVETMAAQSTLITHVENPVQFSLVPFAGSVNVGPQYLNAAWMDPEGRSPVNLENFTLPVTIDSTRKIEEKPVGSGRYYKSGTGWGERNNKPYSRAELYADLSLRSKETWLPWQGCVESRPGTYALDVTPPSDNNPDTLFVPMFGPAEYYNTDSRGNVTSTVLNSWWQDDTSLAYSPRQSDLKKYYLRDSLDKIYRGGRSNGGGPNYSCTSSPLTPLTDVTTEEGMKTIQTAIKAMVPSGGTNVPEAMAWGWRTIVRGAPFTEARPSTERGNDKVVIVLTDGANTYYKYDGLAGSGPDRAANFSYYSAHGYTARITKHYSQARLFQESGVSVSQNNSTYTKAMNARFAKLCDNAKSASIIVMTVALDLSETNSTEKAQIDLLRSCSSNSRVRMESGRPAKLFWNSTGGELSETFRQIGDELSNLRIVD
>NZ_CP044971.1|WP_010660993.1|907846_908695_+|TIGR01459-family-HAD-type-hydrolase
MKQLERLDDLTDQYDVLFCDVWGVVHNGEAAYPAAIEALKRARAKGVTVILVTNSPRPHPDVEKQMLGLGVPADAYDRVVTSGDVTRDLIAEGPRKVFHIGCERELTIYDGLDVELVEEFEASGVVCTGLYDDESETPDDYKELLVRLRSRNLPFICANPDIMVERGTRLIWCAGALAREYGQLGGRTLIAGKPHRPIYEAALRFAEEIRGETVEKSRILGIGDGVLTDVKGAADFGLDVLYISGGVHAADYTTDGTVDIARMEAFLQKHGNRPVAALNALV
>NZ_CP044971.1|WP_029376216.1|908736_909726_+|bifunctional-riboflavin-kinase/FAD-synthetase
MTPSSFQRLSGTDSLPERLQNCVVAIGNFDGVHRGHQAVLERALEIAEKSGLPAVVLTFEPHPRSFFKPDAPIDRLTAAAKKAEILRLMGFDAVVEQPFTGEFSSRSAEDFVEHILVERLHASCVVTGYDFHFGKGRRGTPEFLQKAGEKAGFTVTLVDAFSDEGDNLVSSTRIRNLLCEGDVVQAAGLLGYRYMACGKVIHGKKLGRTLGFPTANMQIDAQAGLKHGIYAVRFRRENGDLNDGVASFGRRPTVDSDGTPLLETFLFDFSGDLYGEIACVSFFGFLRGEIKFDGLDPLIDQMKRDDAEARALLASAKPLSELDRLLSFE
>NZ_CP044971.1|WP_029376217.1|909825_910686_+|MipA/OmpV-family-protein
MLEFNVAHIVPLALVAGAAFLTSSSLAFSADVQQTDIYAAETVQPARKHFWSGDWYLKVGAAGLVAPKFEGSNKYRFSAQPLISLGRQGQATRFSSRNDNVSFALIDNDRFRVGLAGKLLFERDDDIHGLKDTKFGGEAGAFVDVYPTDWMRVRGEVRHGIRAHNGVVADIAADAFYDVTPTVRVSGGPRATFASKDYFKTYFGVDAEEAVTSGLSEYSPGGGFKSAGVGGAITWKATDKIDTSLFGEYSRLQGSAKDSSIVKERGSPDQFMVGVSATYRFDFSLD
>NZ_CP044971.1|WP_010660996.1|910993_913906_+|isoleucine--tRNA-ligase
MTETTKIDYSKTLYLPQTEFPMRAGLPQREPLFVERWEGMNLYKKLREQAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYNSNYVPGWDCHGLPIEWKIEEKYRAEGKNKDEVPINEFRRECREFATNWIKVQTEEFKRLAILGDFENPYTTMNFHAESRIAGELLKFAASGQLYRGSKPVMWSVVERTALAEAEVEYHDVESDMIWVKFPVAGQNDLSDSAVVIWTTTPWTIPGNRAVSYSSRIEYGLYEVTEAENDFGPRPGEKLIFADKLAEESFAKAKLQFKRLRGISADELGKIVLDHPLKGFGGGYEFIVPMLDGDHVTDDAGTGFVHTAPSHGREDFEAWMNNARELEARGIDPSIPFPVGDDGFYTKDAPGFGPDREGGPARVIDDNGKKGDANKSVMDQLIARDKLFARGRLKHSYPHSWRSKKQVIFRNTPQWFVYMDKNLGDGTTLRSRALKAIDDTRFVPAAGQTRLRSMIEGRPDWVLSRQRAWGVPICVFVDEEGNILQDDAVNKRVLDAFEAEGADAWFAEGARERFLGSRANEGWTQVRDILDVWFDSGSTHTFTLEDRPDMKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYNAVVTHGFTMDAHGKKMSKSLGNTVTPQDVIKESGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDEGENLPHADLPELERLMLHRLTELDEVVRSGYDAFDFKRIARTLIDFMNVELSAFYFDIRKDALYCDAPSSVRRKAALLTVREIFDHLTTWLAPMLPFTMEEAWLDRYPQSVSVHAEQFRPTPAEWRDDVLAEKWRKVRAVRRVVTGALELERADKRIGSSLEAAPLVYISDKSLTDSLEGLDFAEICITSGISLSDAAVPEDAFTLSDVKGVAVVPARAEGEKCARSWRYTTDVGSDPEFPEVSARDAAALRELKALGKLEA
>NZ_CP044971.1|WP_010660997.1|914160_914835_+|hypothetical-protein
MKIEGRVLVLMTAIAGVSLSGCVSSPTYGTDKTAGAQLFDDVSNMASFGQGKNNKERIDYKPRPDLVRPAPGDKGQLPAPQQSVVSANDPNWPESPEQRRKRLRDEITANRDDPNFVSPVVQDGPVASNIQAALPRGNSRREDYESRTPTFDPAKVAAYKAARQQQVQGSSTTRRYLSEPPLTYREPASTAAVGELGTDEAQKERERKKASGKSKGWRDYLPWN
>NZ_CP044971.1|WP_029376218.1|915054_915621_+|cytochrome-b
MNDTNTIWDTPSGYGLISRSLHWLMALLFLWQFASAILRVVAKDTMIYNIFWSAHYQLGFALLVLVLLRGVWGLLNSGRRPHKSGHVGKLAKLGHLVIYGLMFAVPALALLRTYGGGRGFSFLGIRIFEQTGVKNAALTAPGSALHGLLGWGLLVIIAGHVLMALIHHFMLRDNTLRYMAGHKALSRS
>NZ_CP044971.1|WP_010660999.1|915617_916091_-|nucleoside-deaminase
MNKSAKVPDPNMATPMEIALAEARAAGSRGEVPIGAVIVHHGTIIARAGNRTREFNDVTAHAEVLAIREAGKTLQSERLVDCDLYVTLEPCAMCATAISFARIRRLYYGASDPKGGGVEHGPRFYTQPTCHHVPEIYAGFSEGDSQKILRDFFRDKR
>NZ_CP044971.1|WP_010661000.1|916281_918012_+|pseudouridine-synthase
MTKDDDNKDGKRPHGRGGRSDRPGRPDRDTRPRRDDGGRDKPRKFAPRDAEGQEDTGERIAKRLARAGIASRREAETMIAAGRIAVNGKVLESPAVNVKRTDIITVDGKPLKQTERTRLWLYHKPAGLVTTNRDPEGRPTVFEALPAEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQVQLDELKNGIAVDGVFYGSIEATLEREQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRILRDQLGDKLIEDSGADFDAPVLNEFSNAAVQGRTRRDVEDEGEEGERRRGPREREWISSSPQRRRGRDDKGAEKVEPRRRGNANVWMAPGARPKGENAAAKPARVERQVPHRSAKFSGDLQMRPRRAGDEEQGRDEGGERRYNKRPEGRFDKDARPQRPRPEGNRSEEGRPERREQREDGRKERRPGKRERAELRDAEGRTVEHGKGGFEGRKTGKPGGPRGEGRFGASDRDTRSGPRSSGPGNKPRRFDDGPKDGPRRGPGNKPGGKPGGKPGGGKSGGGRTGGGGADRRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

188851 : 197733

Tupanvirus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029928702.1\|188851_190288_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.8e-83	40.3
WP_029928699.1\|190307_192158_-	glycosyltransferase	M1HYN2	Paramecium_bursaria_Chlorella_virus	1.3e-75	37.1
WP_010660576.1\|192154_193141_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	2.8e-45	36.1
WP_010660575.1\|193137_194106_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	8.1e-90	49.2
WP_029928696.1\|194547_195252_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012093691.1\|195409_196141_-	Asp/Glu/hydantoin racemase	NA	NA	NA	NA
WP_029928694.1\|196228_196951_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.6e-10	29.1
WP_012093692.1\|196953_197733_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.8e-15	26.1

DBSCAN-SWA_2

1779951 : 1802393

Sinorhizobium_phage(82.35%)

capsid,head,tail,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151895844.1\|1779951_1782630_-	hypothetical protein	A0A2D2W226	Sinorhizobium_phage	1.0e-145	41.4
WP_151612373.1\|1782629_1783049_-	hypothetical protein	NA	NA	NA	NA
WP_151895845.1\|1783074_1783638_-	hypothetical protein	A0A2D2W208	Sinorhizobium_phage	1.5e-51	55.1
WP_151612377.1\|1783637_1784255_-	hypothetical protein	A0A2D2W2B3	Sinorhizobium_phage	4.4e-41	41.5
WP_151895846.1\|1784254_1786102_-	hypothetical protein	A0A291AUM6	Sinorhizobium_phage	1.1e-66	34.7
WP_151612381.1\|1786101_1786290_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_151612383.1\|1786307_1786724_-	hypothetical protein	NA	NA	NA	NA
WP_122241909.1\|1786725_1787139_-\|tail	phage tail protein	A0A291AUM5	Sinorhizobium_phage	4.2e-35	61.8
WP_151612385.1\|1787171_1787636_-	hypothetical protein	NA	NA	NA	NA
WP_151612387.1\|1787637_1787979_-	hypothetical protein	NA	NA	NA	NA
WP_151612389.1\|1787978_1788347_-	hypothetical protein	NA	NA	NA	NA
WP_151895847.1\|1788376_1789411_-\|capsid	major capsid protein	A0A291AUL7	Sinorhizobium_phage	5.3e-79	46.2
WP_151895848.1\|1789466_1789817_-\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	1.4e-28	59.0
WP_151612395.1\|1789862_1790387_-	hypothetical protein	NA	NA	NA	NA
WP_151612397.1\|1790432_1791326_-	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	5.4e-88	57.1
WP_151612399.1\|1791322_1792948_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	8.1e-167	56.3
WP_121991132.1\|1792944_1793166_-\|tail	phage tail protein	NA	NA	NA	NA
WP_151895849.1\|1793180_1795217_-\|terminase	terminase	A0A291AUK9	Sinorhizobium_phage	9.2e-261	64.1
WP_151612403.1\|1795213_1795855_-	hypothetical protein	NA	NA	NA	NA
WP_151895850.1\|1796062_1796842_-	hypothetical protein	NA	NA	NA	NA
WP_151895851.1\|1797054_1797711_-	hypothetical protein	NA	NA	NA	NA
WP_151895852.1\|1797697_1798312_-	hypothetical protein	A0A291AUS5	Sinorhizobium_phage	2.1e-22	34.8
WP_151895853.1\|1798368_1798878_-	hypothetical protein	A0A291AUS5	Sinorhizobium_phage	1.3e-43	75.6
WP_151895854.1\|1798877_1799531_-	hypothetical protein	A0A291AUT5	Sinorhizobium_phage	2.6e-68	60.9
WP_151895855.1\|1799527_1800061_-	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	4.3e-24	40.6
WP_151895884.1\|1800042_1800366_-	DUF4406 domain-containing protein	W6E9N4	Rhizobium_phage	8.6e-28	60.2
WP_151895856.1\|1800377_1801562_-	S-adenosylmethionine-binding protein	M4MB46	Vibrio_phage	2.9e-20	33.7
WP_151895857.1\|1801558_1801882_-	hypothetical protein	NA	NA	NA	NA
WP_151895858.1\|1802009_1802393_-	DUF2312 domain-containing protein	A0A240F4X4	Ochrobactrum_phage	1.5e-31	86.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP044970

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

277049 : 338194

uncultured_Mediterranean_phage(30.3%)

capsid,protease,portal,terminase,tRNA,head,integrase

attL 296971:296988|attR 334887:334904

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010661251.1\|277049_279329_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.6e-51	44.7
WP_010661250.1\|279492_279834_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.4e-12	41.5
WP_122241814.1\|280260_281124_+	ATP-binding protein	NA	NA	NA	NA
WP_105529016.1\|281193_282510_-	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	8.7e-18	40.2
WP_012092209.1\|282692_283361_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.3e-13	36.9
WP_010661246.1\|283364_284141_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.4e-38	38.3
WP_122241834.1\|284174_285458_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-102	46.3
WP_012092212.1\|285533_286358_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-51	45.3
WP_036564045.1\|286354_286975_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_010661242.1\|287094_287325_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	9.1e-08	67.4
WP_012092214.1\|287470_288199_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.6e-42	45.9
WP_010661240.1\|288191_289043_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	6.8e-32	35.2
WP_122241812.1\|289116_290136_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	4.8e-16	36.4
WP_151577018.1\|290274_293232_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_029924963.1\|293543_295301_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_122241810.1\|295498_296707_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_006471759.1\|296875_297202_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	6.0e-21	48.6
296971:296988	attL	NA	NA	NA	NA
WP_010661235.1\|297291_297999_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_010661234.1\|298172_298955_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_010661233.1\|298995_299787_-	sel1 repeat family protein	NA	NA	NA	NA
WP_122241809.1\|300235_300901_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	5.0e-06	32.2
WP_029376248.1\|300900_301542_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA
WP_010661230.1\|301670_302150_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_029924973.1\|302219_303239_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_105529005.1\|303391_304174_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_012092224.1\|304192_304387_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_122241808.1\|304386_305091_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_151895557.1\|305188_306211_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_151895558.1\|306307_307420_+\|integrase	tyrosine-type recombinase/integrase	I6NSG1	Burkholderia_phage	3.4e-108	54.0
WP_151895559.1\|307425_308025_-	hypothetical protein	NA	NA	NA	NA
WP_151895560.1\|308021_308306_-	hypothetical protein	NA	NA	NA	NA
WP_151895561.1\|308702_309467_+	hypothetical protein	NA	NA	NA	NA
WP_151895562.1\|309456_310134_+	hypothetical protein	NA	NA	NA	NA
WP_151895563.1\|310260_311097_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	2.5e-119	74.4
WP_036578315.1\|311381_311579_+	hypothetical protein	A0A291AUQ4	Sinorhizobium_phage	6.6e-07	42.4
WP_151895564.1\|311575_311875_+	hypothetical protein	NA	NA	NA	NA
WP_151895565.1\|312119_312305_+	hypothetical protein	NA	NA	NA	NA
WP_151895566.1\|312338_313016_+	SOS response-associated peptidase	A0A291AUP1	Sinorhizobium_phage	1.4e-51	44.6
WP_151895567.1\|313026_313317_+	hypothetical protein	NA	NA	NA	NA
WP_151895568.1\|313885_314173_-	hypothetical protein	NA	NA	NA	NA
WP_151895569.1\|314172_314991_-	hypothetical protein	L7TMU6	Rhizobium_phage	1.6e-30	38.7
WP_151895570.1\|315133_316336_+	acyltransferase family protein	NA	NA	NA	NA
WP_151895571.1\|316303_317269_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_151895572.1\|317336_320126_-	hypothetical protein	A0A291AUU8	Sinorhizobium_phage	2.2e-39	49.5
WP_151895573.1\|320170_322387_-	hypothetical protein	A0A291AUU6	Sinorhizobium_phage	5.7e-163	43.9
WP_151895574.1\|322388_322793_-	hypothetical protein	NA	NA	NA	NA
WP_151895575.1\|322783_323356_-	transcriptional regulator	A0A291AUU9	Sinorhizobium_phage	2.9e-63	58.6
WP_151895576.1\|323358_324090_-	hypothetical protein	A0A291AUU7	Sinorhizobium_phage	3.1e-65	54.0
WP_151895577.1\|324089_326171_-	hypothetical protein	A0A0H4ADF4	Pseudoalteromonas_phage	5.2e-41	38.1
WP_151895578.1\|326177_326456_-	hypothetical protein	NA	NA	NA	NA
WP_151895579.1\|326470_326815_-	hypothetical protein	NA	NA	NA	NA
WP_151895580.1\|326825_327521_-	histidine kinase	A0A0H4INV0	Stenotrophomonas_phage	4.0e-06	57.9
WP_151895581.1\|327522_328026_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_151895582.1\|327917_328376_-	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	5.6e-25	45.6
WP_151895583.1\|328372_328708_-	hypothetical protein	NA	NA	NA	NA
WP_151895584.1\|328697_329060_-\|head	phage head closure protein	A0A0U4JE41	Bacillus_phage	1.6e-06	32.6
WP_151895585.1\|329025_329619_-	hypothetical protein	B4UTP7	Rhizobium_phage	9.2e-36	44.6
WP_151895586.1\|329618_329987_-	hypothetical protein	NA	NA	NA	NA
WP_151895587.1\|330048_331317_-\|capsid	phage major capsid protein	B4UTP3	Rhizobium_phage	2.3e-124	56.7
WP_151895722.1\|331416_332010_-\|head,protease	HK97 family phage prohead protease	B4UTP2	Rhizobium_phage	1.5e-41	55.5
WP_151895721.1\|332002_333166_-\|portal	phage portal protein	B4UTP1	Rhizobium_phage	1.4e-136	66.2
WP_151895588.1\|333249_335031_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	4.7e-91	36.6
334887:334904	attR	NA	NA	NA	NA
WP_151895589.1\|334990_335632_-\|terminase	terminase	NA	NA	NA	NA
WP_151895590.1\|335752_336178_-	HNH endonuclease	A0A1B0RXC9	Streptococcus_phage	6.4e-15	44.7
WP_151895591.1\|336375_337029_-	antitermination protein NusG	NA	NA	NA	NA
WP_151895592.1\|337012_338194_-	helix-turn-helix domain-containing protein	A0A291AUS5	Sinorhizobium_phage	5.6e-85	49.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044971

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP044970

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection