CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP044991	Deinococcus sp. AJ005 plasmid p115k, complete sequence	2 crisprs	NA	4	0
NZ_CP044987	Deinococcus sp. AJ005 plasmid p96k, complete sequence	0 crisprs	Cas14u_CAS-V	0	0
NZ_CP044988	Deinococcus sp. AJ005 plasmid p17k, complete sequence	1 crisprs	NA	1	0
NZ_CP044989	Deinococcus sp. AJ005 plasmid p380k, complete sequence	0 crisprs	NA	0	1
NZ_CP044990	Deinococcus sp. AJ005 chromosome, complete genome	2 crisprs	WYL,cas4,DEDDh,cas3,csa3	2	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044991_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044991_1

25956-26044

Orphan

Consensus_repeat	Method
TTTCCCGCAAAGGTATCGCTAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044991_1

>merge|NZ_CP044991|1|25956-26044|CRISPRCasFinder
TTTCCCGCAAAGGTATCGCTAGTTTGGCCTCTTTTCCCGCAAAGGTATCGCTAGTTTAGACCCCCTTCCCCGCAAAGGTGTCGCTAGTG

>NZ_CP044991|1|1|25956-26044|CRISPRCasFinder
TTTCCCGCAAAGGTATCGCTAGT	TTGGCCTCTTTTCCCGCAAAGGTATCGCTAGTTTAGACCCCC
TTCCCCGCAAAGGTGTCGCTAGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044991.1\|WP_151848707.1\|33663_34299_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848699.1\|26762_27641_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225095
NZ_CP044991.1\|WP_151848702.1\|28848_29226_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848692.1\|16910_17261_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848689.1\|13601_13964_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP044991.1\|WP_151848693.1\|17310_17634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848694.1\|17729_17873_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848703.1\|29292_29985_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848706.1\|32027_32579_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848704.1\|30669_31110_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848698.1\|24452_25850_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227821
NZ_CP044991.1\|WP_151848696.1\|20558_23531_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225461
NZ_CP044991.1\|WP_151848695.1\|19161_19803_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848700.1\|27682_27907_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212155
NZ_CP044991.1\|WP_151848697.1\|23558_24227_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|260010
NZ_CP044991.1\|WP_151848691.1\|15134_16796_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP044991.1\|WP_151848705.1\|31165_31960_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378999
NZ_CP044991.1\|WP_151848690.1\|13960_15067_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848788.1\|30196_30412_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848701.1\|28319_28775_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP044991.1\|WP_151848698.1\|24452_25850_-\|hypothetical-protein	gnl\|CDD\|227821	COG5534, COG5534, Plasmid replication initiator protein [DNA replication, recombination, and repair].	4.40463e-92
NZ_CP044991.1\|WP_151848696.1\|20558_23531_-\|hypothetical-protein	gnl\|CDD\|225461	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription].	4.21e-20
NZ_CP044991.1\|WP_151848700.1\|27682_27907_-\|hypothetical-protein	gnl\|CDD\|212155	cd11586, VbhA_like, VbhA antitoxin and related proteins. VbhA is the antitoxin to VbhT. The VbhT toxin of the mammalian pathogen Bartonella schoenbuchensis is responsible for the disruptive adenylation of host proteins. VbhT also induces FIC-domain-mediated growth arrest in bacteria; it is inhibited by this antitoxin which binds to block the ATP binding site of the VbhT FIC domain.	5.15004e-08
NZ_CP044991.1\|WP_151848697.1\|23558_24227_-\|hypothetical-protein	gnl\|CDD\|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	0.00434135
NZ_CP044991.1\|WP_151848691.1\|15134_16796_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	8.21171e-84
NZ_CP044991.1\|WP_151848689.1\|13601_13964_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	7.45968e-21
NZ_CP044991.1\|WP_151848699.1\|26762_27641_-\|hypothetical-protein	gnl\|CDD\|225095	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning].	2.88304e-33
NZ_CP044991.1\|WP_151848705.1\|31165_31960_-\|hypothetical-protein	gnl\|CDD\|378999	pfam12957, DUF3846, Domain of unknown function (DUF3846). A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This domain is found associated with an pfam07275 like domain. This suggests that this family may also be involved in evading host restriction.	0.00532102

>NZ_CP044991.1|WP_151848698.1|24452_25850_-|hypothetical-protein
MVKKPKTPNLHDELNFARFGVISMHSRVDQGVTTWNTEFTVNARTFRIEAITPQGRPHGIDTDTLVSLETLFVAHGCPEDNWVHTTAYEVRELMGLANNGENYHRLRQSIRRLYFTSVIVGRKSSLTGTQKVRWDNVGVRFFEGLRYRDSEDDGELSALESEATLSIRLGEQLADSIRAGISQVLDGQLLHRLEQPPARALYRTLQAHRRQDDGQMLKELQVPLTEWRQATGLTTDRSDLVRRALASAHEELLANHYLERAVIEGRGKAAVAQYTFADTHAADPALVRLLRQAGVTVARATALAGQHPERVEEALRFLELRQRAAQGGVRNPGGLVADFLEHPAKYDLPADFVTPERQRQERASQVKEQKLSADREAQTRSEAQLDQLGEAPPAEQWTAQRATLQMLLKKHLNAAQWSQLEHLAQRGEIGAVALTRELLEATARSAVKEQIDQLKRKLNPLLPVD
>NZ_CP044991.1|WP_151848697.1|23558_24227_-|hypothetical-protein
MRDQATIATDASAVGTAAAYGGVLRDLTGETREVSGQIPRTALQEVTAALAALQQLALPFGVRAVLHVDAQDEELRAVLCVTHPNVTVVRIPRNSSPLHQRAHELATQALRDLPPRTRIPLQDGPRIAAYAVKGVDTPAPAYAVSFWINGEIQVVSGTVEPQETRALTSHLLKAKAQEGVPAGFKVIEAGYAVLRNNQASWGVTGRELAQLRSAAAAGLSNF
>NZ_CP044991.1|WP_151848696.1|20558_23531_-|hypothetical-protein
MSSLPVRRRSQVRFSVPEPMPQGLARPRLQEQLTDLTIKVAALLAPSGYGKTVLLAQWARQQNGNVIWLKLHQEDRDAHFFLQSLVDAFQYFGLNLSYWKSGAILETSPSRALLALLNDVNNHPSDLTLIVDGGEHLSDDSANLLNAFVDGLGEGHRIFVAQHEASSFQIAPFLASGIGTEINAGQLRFTEHEVDVLARTFEAGQLPPSDLHGWPAGVMLEFHAQNNQLQAGTEHLLLTLVRRLPEDIQHALPALSVMEIWTPTTPSVLHLNLPGDWLDQVRRVGLPVLQQGKAFIPHDALREYLQDTLQRDQAQFKTVQGYAAQQADREGRPYAATLHFLAAGQIESALSMIQNLVPGWYRTANWKIAIDLLSKVPDGFLTSELRSLLALSLGETGEGERAETLARRQIDLFPTATAYYALALRNYRTNNFDEMQKSIDGGLETIRVTPSPTNQRDTIQLLRSQAVLFISSGKPEAALEVAEDAVSRAMIYGDNSLRIATQSVKAHIMRGMKYDSEILLEQYFNLYKSSINENPHRMMPVVQTYARQLNRVRRPRESLEILKEYTKNYGEIYPLADFMLIGDISLAYLSLGDYENSLETALKGYKFSLEHDHKGYLSSNLFTALWIYFGTDRLQEAEALLRSSLHQIDQTPPRAGDDASERAFFKFILGVPVEALELADQAFTFDQVPETAAVLLSMLILHQKGEVSKDLGHKLREALSLYSEDHALYQVAFSKFEPIFQAYKTAGIEKNFFDDLLANAYLIGQIEKKKLRLTVIGHFRIDINGMSSRLGYSTALETLIYRVLHPGASQDEITVAIWPLSDLARGRGSVQQARRTVNRTFQTAFKQPGMELLQTAGSGRRNPGWMIDTEVHVSCDALDILSSTDAQTIQNLYKGSFLPSSNHEWVIDFRVLIARHVARVYQAHANALGETSDALQWLMRAAMADQEPDTFERVMALSRVLGRQEIERSAQQALEALREGHAPYLTHWTN
>NZ_CP044991.1|WP_151848695.1|19161_19803_+|hypothetical-protein
MTGPVTVFLTEAFLPLSQEIGKFGAMYRAEAEALFGLEFVQAAVARKVCVATETDYGWVLYLAHKGRRMIGLTSSFQSRTENLENAVCSRDAYSNIVEAGHSVETVERQRRASIVYTRAGTRVLALAQARGFNRTVIRRNYSHWVESGEYGELHLYSYLSPPETMEFGMLMLHSKNPSALPIDPTKFLLYALTPWPVMHRQKAAGADTSPRLD
>NZ_CP044991.1|WP_151848694.1|17729_17873_-|hypothetical-protein
MPSRSRNLRFSSCQTLTLKVRRLKEAQPLPKNKGIVENLKGVLELPQ
>NZ_CP044991.1|WP_151848693.1|17310_17634_-|hypothetical-protein
MTGNLEACLDRLRNANPQLWEFAVQIAIHHDDPATHAVAAIGFYKALVHLGVKEVRRCIQRLEKWRLKGQKIETPGRLLMHLLNEKARAATGFNINDLGTEPGGVVA
>NZ_CP044991.1|WP_151848692.1|16910_17261_-|hypothetical-protein
MSLSTSKPLTATLLPLLLALGAVPLIVMTYDGVQTRTFERRCTAEYEATQPPQATRPTILFVFGKGAERLPKPTFAQMYVSGSDVKSSGATQAAQFMTCAVTPEGTVTVRFGEGTD
>NZ_CP044991.1|WP_151848691.1|15134_16796_-|MBL-fold-metallo-hydrolase
MSDLHFLGLGGTDEVGASSYLYRLAEGNLLIDAGARPGSIGDVALPQLGLLAEHPPAAMVLTHAHLDHVGALPVVIRRFPKLAIYCTEATARIATLVLGDTLKVTTMQGQPLFSAGEMKRTLERLRPVPYFTRINDHGFAFTLFPSGHLLGAASVLMESGGRAVFHTGDVSNISTPVVDAAWLPAAVTPVDAVVSESTYGDTLLPSRKEQVRAFVTAIGETLRGGGRVLIPSFALGRAQEITQILQTAMMSGLLPSVPIHLDGLTRGITEAYEDMLPLLPEALQNRSKVSKQRPFLTGTVNLVKDRRERDGILASERPAVVIASSGMLHAGASPQYARAWLPHAENALFVVGYQDAESPGRRLLELQQGGEVMLPAQNGGKGGGGFEPVSAYSRVERFYLSAHADRGGLLGMIARYAPGKVILTHGELRARSNLAGYLNSKHDVGLPEAGELVPLKDSGKRRGSFMNTAPKKLEAMKERHARTTVKVRYDPETHEVRIALPDTLDGALFGEGDYTLEVLRGKTSRVKLREHDAEALEGQRQAEEDRAAEETVA
>NZ_CP044991.1|WP_151848690.1|13960_15067_+|hypothetical-protein
MKQTEQYVRQATRGLWGKARRELKTELEGHIAERCQEFRLAGLSAAEAERQTLRELGAPAQVSGGMLDVHTFPALGKAGVLSALLATAIFSALPQGLAQVQSIYSRSENYGASSYLDFQQLKEAVQKAGGELSGPADSATVTIPGAPRPSYPLNTAQAPSATLTQDGKTYLNLGTFLGGLFNTGADINVGGWNNPTIQAGQARITLETQDWRVLNDLYMRLIRSSGPQLNAGAILSRLEPIGDTGEVAFTGTFAPDGVYALIMPVFGEWFSQTAGGEQLDSGSIVLKTNINQAKAGQLDFRIDNGVQNFKLASSVDEFQLALDPYRDTTKLRQWDAQHPAPVLLLKLSGKFGPDAYTVVSPASVKKQP
>NZ_CP044991.1|WP_151848689.1|13601_13964_+|PadR-family-transcriptional-regulator
MSTAPPTPPDANLLRGHLDLILLSIIQGPPKYGLEISKLAQTATDGYFDLKVGSLYPALHRLEKAGFVRSEFTNGPRSGNQVKAYTLTESGGRELAIRRAEFQTFTQQLGKLWTLTGGMT
>NZ_CP044991.1|WP_151848699.1|26762_27641_-|hypothetical-protein
MKNRLGIQDAGELSQAERKLASIRAVEIKDGTAPPATRGHFDADHLRAIHQHTFGDVYEWAGTTRGDPLTLEGQREQQPVQLIKAQTSFEEGPRVNAKLDSLFARLAEQDGLRGLSREDFSRQAADVLSGLNQVHPFREGNGRTQREFMTQLAEQAGHPLQFEGVTQQRMTVVSFDAAQGDKDSMRRLFDEITDPDRARVLQRGFDSLHGRYGEQVQAVYLTSTTAGETYTGLLQHKDRQHFIMNSTGDRVVGHPQDLPKGSSPGEVVKVTATPVPSVFEERQMQRGRNLDY
>NZ_CP044991.1|WP_151848700.1|27682_27907_-|hypothetical-protein
MTTLQDQLRAQSDALMVEADARKQRRKIVQSVAHSSAMEGMPLDAQTMTMFEGYVDGTMTTEQMREAVLKQYRR
>NZ_CP044991.1|WP_151848701.1|28319_28775_-|hypothetical-protein
MPHTTTNPQATEAAHALSGVVRCYTLLGEMDSGPAPASAADAQMWAQTFEATWKEAQALMQEARALGWKGKLGDVMPGQPSSRARKIYATCHMVRLSVTRSAREALDTAAALVSGFRFQGEVPANLEHLHYDLAYALASAQIRAEKRSAGP
>NZ_CP044991.1|WP_151848702.1|28848_29226_-|hypothetical-protein
MQEIKTLATTRDPRAELETLLETLRQRYDVTPEDMKDVRADYEKQLAAELRRREVLAELWPDAPAECWIYASFVRPFSEYGAPPAQVQAQRQHRADWPAQVPHSYIACAAPLDLPQVELLRVPLT
>NZ_CP044991.1|WP_151848703.1|29292_29985_-|hypothetical-protein
MSVIPSSPNEIRSLEVAAVELCGPHVGGPIWPALYVSNRRAYMMRYADRDLTAAEEQAHRREYAQAQGQGDHTAAELMDRLQQLLYNCEELENAAEEQARRVLVDSVAFELLPADGGERTVNVDRFANIQRPDFNTYRITTRNPADGQYARVYLMNGHAHPHEGFTTTDPRKAFQKMWEMHDVCQLHCVTESTADLLELDRLMNEEGKTFTAASIALTAFRASRARAQAS
>NZ_CP044991.1|WP_151848788.1|30196_30412_-|hypothetical-protein
MIDHGIQDYGREQWDAGAIRCGCGRTLEMTGDWEGTRCACGNEYNTGGQQLRANWRVFCRETGELNDDDFL
>NZ_CP044991.1|WP_151848704.1|30669_31110_-|hypothetical-protein
MTAADTIQTPALTFDCTDTADFWDTDHRTVIRKPTHAAYRGGHRLPHMSQQLGRDLAGEGYTRKTYTLDVTQWDDEARERRNSPYRYVVTQSPATAHTAFQTAEELYAWCSAYAVTLTPRPARWCGDFTATLGDPADWQPLEIRAL
>NZ_CP044991.1|WP_151848705.1|31165_31960_-|hypothetical-protein
MQPTMRVIYPDGRQESHPITPETDTYELLKKLIGGWLEYVPAHYHALQDHEAVIDEEGMLKELAPNWPGSRLIGLDLTQYPPLHGPIVIVPHDPEDGPSPAQQRQNMASGNNLVSVYARALEGDAEALATLGISGPDEITVIDAREAAPLHLYLMQPDGHTERQTVGGNDEAHEWIDGKLGEAYRVPPEECGVQAYAVIYSAAPGDVRPNGAAQKALDLQTPVYGPVVFAPTGQADPSPAHQRLSEALSGNAAARAELGITANW
>NZ_CP044991.1|WP_151848706.1|32027_32579_-|hypothetical-protein
MTQTAPTKITNFSRTWKVELYGNWGDSASASLFIGSHIVTLTADDCGDLTAIIDGENQATIDRAVSYLNWGKEAGSRLEVVREGPTEPTPTPPAPVALAVPMIGKGRAHMLHKIMGAAGLPRAQHYGLAAAALGEPFPLDTLSDLTEQEAGTVWAYLCAVYPSAREIGERVRAKAAPTQAQAA
>NZ_CP044991.1|WP_151848707.1|33663_34299_+|hypothetical-protein
MKGSIWRFWPLVLMGLSHAAAAPNCDTLRLNHFEAIRYIDKAEFPNPSKEVLIGIQEMKKPVAVCGLAVENTTNLITIKAKKRDILAFSTNTTGDTSPISLSSYSIRQDGLVVEGIKINITMLDTDKNYSAKASIPGLMIDNSAVGMRIDGGKLLPMYWPDGDWNRIAIPKKTRTLEFYLKSELDTNWQRVSVDLKSPTIKVYRKFPFPAK

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Crispr_ID: NZ_CP044991_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044991_2

26110-26335

Orphan

Consensus_repeat	Method
TTTCCCGCAAAGGTATCGCTAGT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP044991_2

>merge|NZ_CP044991|2|26110-26335|CRISPRCasFinder
TTTCCCGCAAAGGTATCGCTAGTGGTCATTTTGGGCAATCCCGCAAAGGTGTCGCTACTTCCCTTCCATATCCCGCAAAGGTATCGCTAGTCCTGTGAAAGCGATAGCGACTGTGTCACACGGAGAAATAGCCTGTTGACAGATAAAATCCCGCAAAGGTATCGCTGTGAAGGTGTCTGCTGCGCCGTGCCAATGCTGTTCCGTTTCCCGCAAAGGTATCGCTACG

>NZ_CP044991|2|2|26110-26335|CRISPRCasFinder
TTTCCCGCAAAGGTATCGCTAGT	GGTCATTTTGGGCAATCCCGCAAAGGTGTCGCTACTTCCCTTCCA
TATCCCGCAAAGGTATCGCTAGT	CCTGTGAAAGCGATAGCGACTGTGTCACACGGAGAAATAGCCTGTTGACAGATAA
AATCCCGCAAAGGTATCGCTGTG	AAGGTGTCTGCTGCGCCGTGCCAATGCTGTTCCG
TTTCCCGCAAAGGTATCGCTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044991.1\|WP_151848707.1\|33663_34299_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848699.1\|26762_27641_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225095
NZ_CP044991.1\|WP_151848702.1\|28848_29226_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848692.1\|16910_17261_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848689.1\|13601_13964_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP044991.1\|WP_151848693.1\|17310_17634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848694.1\|17729_17873_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848703.1\|29292_29985_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848706.1\|32027_32579_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848704.1\|30669_31110_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848698.1\|24452_25850_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227821
NZ_CP044991.1\|WP_151848696.1\|20558_23531_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225461
NZ_CP044991.1\|WP_151848695.1\|19161_19803_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848700.1\|27682_27907_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212155
NZ_CP044991.1\|WP_151848697.1\|23558_24227_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|260010
NZ_CP044991.1\|WP_151848691.1\|15134_16796_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP044991.1\|WP_151848705.1\|31165_31960_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378999
NZ_CP044991.1\|WP_151848690.1\|13960_15067_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848788.1\|30196_30412_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044991.1\|WP_151848701.1\|28319_28775_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP044991.1\|WP_151848698.1\|24452_25850_-\|hypothetical-protein	gnl\|CDD\|227821	COG5534, COG5534, Plasmid replication initiator protein [DNA replication, recombination, and repair].	4.40463e-92
NZ_CP044991.1\|WP_151848696.1\|20558_23531_-\|hypothetical-protein	gnl\|CDD\|225461	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription].	4.21e-20
NZ_CP044991.1\|WP_151848700.1\|27682_27907_-\|hypothetical-protein	gnl\|CDD\|212155	cd11586, VbhA_like, VbhA antitoxin and related proteins. VbhA is the antitoxin to VbhT. The VbhT toxin of the mammalian pathogen Bartonella schoenbuchensis is responsible for the disruptive adenylation of host proteins. VbhT also induces FIC-domain-mediated growth arrest in bacteria; it is inhibited by this antitoxin which binds to block the ATP binding site of the VbhT FIC domain.	5.15004e-08
NZ_CP044991.1\|WP_151848697.1\|23558_24227_-\|hypothetical-protein	gnl\|CDD\|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	0.00434135
NZ_CP044991.1\|WP_151848691.1\|15134_16796_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	8.21171e-84
NZ_CP044991.1\|WP_151848689.1\|13601_13964_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	7.45968e-21
NZ_CP044991.1\|WP_151848699.1\|26762_27641_-\|hypothetical-protein	gnl\|CDD\|225095	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning].	2.88304e-33
NZ_CP044991.1\|WP_151848705.1\|31165_31960_-\|hypothetical-protein	gnl\|CDD\|378999	pfam12957, DUF3846, Domain of unknown function (DUF3846). A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This domain is found associated with an pfam07275 like domain. This suggests that this family may also be involved in evading host restriction.	0.00532102

>NZ_CP044991.1|WP_151848698.1|24452_25850_-|hypothetical-protein
MVKKPKTPNLHDELNFARFGVISMHSRVDQGVTTWNTEFTVNARTFRIEAITPQGRPHGIDTDTLVSLETLFVAHGCPEDNWVHTTAYEVRELMGLANNGENYHRLRQSIRRLYFTSVIVGRKSSLTGTQKVRWDNVGVRFFEGLRYRDSEDDGELSALESEATLSIRLGEQLADSIRAGISQVLDGQLLHRLEQPPARALYRTLQAHRRQDDGQMLKELQVPLTEWRQATGLTTDRSDLVRRALASAHEELLANHYLERAVIEGRGKAAVAQYTFADTHAADPALVRLLRQAGVTVARATALAGQHPERVEEALRFLELRQRAAQGGVRNPGGLVADFLEHPAKYDLPADFVTPERQRQERASQVKEQKLSADREAQTRSEAQLDQLGEAPPAEQWTAQRATLQMLLKKHLNAAQWSQLEHLAQRGEIGAVALTRELLEATARSAVKEQIDQLKRKLNPLLPVD
>NZ_CP044991.1|WP_151848697.1|23558_24227_-|hypothetical-protein
MRDQATIATDASAVGTAAAYGGVLRDLTGETREVSGQIPRTALQEVTAALAALQQLALPFGVRAVLHVDAQDEELRAVLCVTHPNVTVVRIPRNSSPLHQRAHELATQALRDLPPRTRIPLQDGPRIAAYAVKGVDTPAPAYAVSFWINGEIQVVSGTVEPQETRALTSHLLKAKAQEGVPAGFKVIEAGYAVLRNNQASWGVTGRELAQLRSAAAAGLSNF
>NZ_CP044991.1|WP_151848696.1|20558_23531_-|hypothetical-protein
MSSLPVRRRSQVRFSVPEPMPQGLARPRLQEQLTDLTIKVAALLAPSGYGKTVLLAQWARQQNGNVIWLKLHQEDRDAHFFLQSLVDAFQYFGLNLSYWKSGAILETSPSRALLALLNDVNNHPSDLTLIVDGGEHLSDDSANLLNAFVDGLGEGHRIFVAQHEASSFQIAPFLASGIGTEINAGQLRFTEHEVDVLARTFEAGQLPPSDLHGWPAGVMLEFHAQNNQLQAGTEHLLLTLVRRLPEDIQHALPALSVMEIWTPTTPSVLHLNLPGDWLDQVRRVGLPVLQQGKAFIPHDALREYLQDTLQRDQAQFKTVQGYAAQQADREGRPYAATLHFLAAGQIESALSMIQNLVPGWYRTANWKIAIDLLSKVPDGFLTSELRSLLALSLGETGEGERAETLARRQIDLFPTATAYYALALRNYRTNNFDEMQKSIDGGLETIRVTPSPTNQRDTIQLLRSQAVLFISSGKPEAALEVAEDAVSRAMIYGDNSLRIATQSVKAHIMRGMKYDSEILLEQYFNLYKSSINENPHRMMPVVQTYARQLNRVRRPRESLEILKEYTKNYGEIYPLADFMLIGDISLAYLSLGDYENSLETALKGYKFSLEHDHKGYLSSNLFTALWIYFGTDRLQEAEALLRSSLHQIDQTPPRAGDDASERAFFKFILGVPVEALELADQAFTFDQVPETAAVLLSMLILHQKGEVSKDLGHKLREALSLYSEDHALYQVAFSKFEPIFQAYKTAGIEKNFFDDLLANAYLIGQIEKKKLRLTVIGHFRIDINGMSSRLGYSTALETLIYRVLHPGASQDEITVAIWPLSDLARGRGSVQQARRTVNRTFQTAFKQPGMELLQTAGSGRRNPGWMIDTEVHVSCDALDILSSTDAQTIQNLYKGSFLPSSNHEWVIDFRVLIARHVARVYQAHANALGETSDALQWLMRAAMADQEPDTFERVMALSRVLGRQEIERSAQQALEALREGHAPYLTHWTN
>NZ_CP044991.1|WP_151848695.1|19161_19803_+|hypothetical-protein
MTGPVTVFLTEAFLPLSQEIGKFGAMYRAEAEALFGLEFVQAAVARKVCVATETDYGWVLYLAHKGRRMIGLTSSFQSRTENLENAVCSRDAYSNIVEAGHSVETVERQRRASIVYTRAGTRVLALAQARGFNRTVIRRNYSHWVESGEYGELHLYSYLSPPETMEFGMLMLHSKNPSALPIDPTKFLLYALTPWPVMHRQKAAGADTSPRLD
>NZ_CP044991.1|WP_151848694.1|17729_17873_-|hypothetical-protein
MPSRSRNLRFSSCQTLTLKVRRLKEAQPLPKNKGIVENLKGVLELPQ
>NZ_CP044991.1|WP_151848693.1|17310_17634_-|hypothetical-protein
MTGNLEACLDRLRNANPQLWEFAVQIAIHHDDPATHAVAAIGFYKALVHLGVKEVRRCIQRLEKWRLKGQKIETPGRLLMHLLNEKARAATGFNINDLGTEPGGVVA
>NZ_CP044991.1|WP_151848692.1|16910_17261_-|hypothetical-protein
MSLSTSKPLTATLLPLLLALGAVPLIVMTYDGVQTRTFERRCTAEYEATQPPQATRPTILFVFGKGAERLPKPTFAQMYVSGSDVKSSGATQAAQFMTCAVTPEGTVTVRFGEGTD
>NZ_CP044991.1|WP_151848691.1|15134_16796_-|MBL-fold-metallo-hydrolase
MSDLHFLGLGGTDEVGASSYLYRLAEGNLLIDAGARPGSIGDVALPQLGLLAEHPPAAMVLTHAHLDHVGALPVVIRRFPKLAIYCTEATARIATLVLGDTLKVTTMQGQPLFSAGEMKRTLERLRPVPYFTRINDHGFAFTLFPSGHLLGAASVLMESGGRAVFHTGDVSNISTPVVDAAWLPAAVTPVDAVVSESTYGDTLLPSRKEQVRAFVTAIGETLRGGGRVLIPSFALGRAQEITQILQTAMMSGLLPSVPIHLDGLTRGITEAYEDMLPLLPEALQNRSKVSKQRPFLTGTVNLVKDRRERDGILASERPAVVIASSGMLHAGASPQYARAWLPHAENALFVVGYQDAESPGRRLLELQQGGEVMLPAQNGGKGGGGFEPVSAYSRVERFYLSAHADRGGLLGMIARYAPGKVILTHGELRARSNLAGYLNSKHDVGLPEAGELVPLKDSGKRRGSFMNTAPKKLEAMKERHARTTVKVRYDPETHEVRIALPDTLDGALFGEGDYTLEVLRGKTSRVKLREHDAEALEGQRQAEEDRAAEETVA
>NZ_CP044991.1|WP_151848690.1|13960_15067_+|hypothetical-protein
MKQTEQYVRQATRGLWGKARRELKTELEGHIAERCQEFRLAGLSAAEAERQTLRELGAPAQVSGGMLDVHTFPALGKAGVLSALLATAIFSALPQGLAQVQSIYSRSENYGASSYLDFQQLKEAVQKAGGELSGPADSATVTIPGAPRPSYPLNTAQAPSATLTQDGKTYLNLGTFLGGLFNTGADINVGGWNNPTIQAGQARITLETQDWRVLNDLYMRLIRSSGPQLNAGAILSRLEPIGDTGEVAFTGTFAPDGVYALIMPVFGEWFSQTAGGEQLDSGSIVLKTNINQAKAGQLDFRIDNGVQNFKLASSVDEFQLALDPYRDTTKLRQWDAQHPAPVLLLKLSGKFGPDAYTVVSPASVKKQP
>NZ_CP044991.1|WP_151848689.1|13601_13964_+|PadR-family-transcriptional-regulator
MSTAPPTPPDANLLRGHLDLILLSIIQGPPKYGLEISKLAQTATDGYFDLKVGSLYPALHRLEKAGFVRSEFTNGPRSGNQVKAYTLTESGGRELAIRRAEFQTFTQQLGKLWTLTGGMT
>NZ_CP044991.1|WP_151848699.1|26762_27641_-|hypothetical-protein
MKNRLGIQDAGELSQAERKLASIRAVEIKDGTAPPATRGHFDADHLRAIHQHTFGDVYEWAGTTRGDPLTLEGQREQQPVQLIKAQTSFEEGPRVNAKLDSLFARLAEQDGLRGLSREDFSRQAADVLSGLNQVHPFREGNGRTQREFMTQLAEQAGHPLQFEGVTQQRMTVVSFDAAQGDKDSMRRLFDEITDPDRARVLQRGFDSLHGRYGEQVQAVYLTSTTAGETYTGLLQHKDRQHFIMNSTGDRVVGHPQDLPKGSSPGEVVKVTATPVPSVFEERQMQRGRNLDY
>NZ_CP044991.1|WP_151848700.1|27682_27907_-|hypothetical-protein
MTTLQDQLRAQSDALMVEADARKQRRKIVQSVAHSSAMEGMPLDAQTMTMFEGYVDGTMTTEQMREAVLKQYRR
>NZ_CP044991.1|WP_151848701.1|28319_28775_-|hypothetical-protein
MPHTTTNPQATEAAHALSGVVRCYTLLGEMDSGPAPASAADAQMWAQTFEATWKEAQALMQEARALGWKGKLGDVMPGQPSSRARKIYATCHMVRLSVTRSAREALDTAAALVSGFRFQGEVPANLEHLHYDLAYALASAQIRAEKRSAGP
>NZ_CP044991.1|WP_151848702.1|28848_29226_-|hypothetical-protein
MQEIKTLATTRDPRAELETLLETLRQRYDVTPEDMKDVRADYEKQLAAELRRREVLAELWPDAPAECWIYASFVRPFSEYGAPPAQVQAQRQHRADWPAQVPHSYIACAAPLDLPQVELLRVPLT
>NZ_CP044991.1|WP_151848703.1|29292_29985_-|hypothetical-protein
MSVIPSSPNEIRSLEVAAVELCGPHVGGPIWPALYVSNRRAYMMRYADRDLTAAEEQAHRREYAQAQGQGDHTAAELMDRLQQLLYNCEELENAAEEQARRVLVDSVAFELLPADGGERTVNVDRFANIQRPDFNTYRITTRNPADGQYARVYLMNGHAHPHEGFTTTDPRKAFQKMWEMHDVCQLHCVTESTADLLELDRLMNEEGKTFTAASIALTAFRASRARAQAS
>NZ_CP044991.1|WP_151848788.1|30196_30412_-|hypothetical-protein
MIDHGIQDYGREQWDAGAIRCGCGRTLEMTGDWEGTRCACGNEYNTGGQQLRANWRVFCRETGELNDDDFL
>NZ_CP044991.1|WP_151848704.1|30669_31110_-|hypothetical-protein
MTAADTIQTPALTFDCTDTADFWDTDHRTVIRKPTHAAYRGGHRLPHMSQQLGRDLAGEGYTRKTYTLDVTQWDDEARERRNSPYRYVVTQSPATAHTAFQTAEELYAWCSAYAVTLTPRPARWCGDFTATLGDPADWQPLEIRAL
>NZ_CP044991.1|WP_151848705.1|31165_31960_-|hypothetical-protein
MQPTMRVIYPDGRQESHPITPETDTYELLKKLIGGWLEYVPAHYHALQDHEAVIDEEGMLKELAPNWPGSRLIGLDLTQYPPLHGPIVIVPHDPEDGPSPAQQRQNMASGNNLVSVYARALEGDAEALATLGISGPDEITVIDAREAAPLHLYLMQPDGHTERQTVGGNDEAHEWIDGKLGEAYRVPPEECGVQAYAVIYSAAPGDVRPNGAAQKALDLQTPVYGPVVFAPTGQADPSPAHQRLSEALSGNAAARAELGITANW
>NZ_CP044991.1|WP_151848706.1|32027_32579_-|hypothetical-protein
MTQTAPTKITNFSRTWKVELYGNWGDSASASLFIGSHIVTLTADDCGDLTAIIDGENQATIDRAVSYLNWGKEAGSRLEVVREGPTEPTPTPPAPVALAVPMIGKGRAHMLHKIMGAAGLPRAQHYGLAAAALGEPFPLDTLSDLTEQEAGTVWAYLCAVYPSAREIGERVRAKAAPTQAQAA
>NZ_CP044991.1|WP_151848707.1|33663_34299_+|hypothetical-protein
MKGSIWRFWPLVLMGLSHAAAAPNCDTLRLNHFEAIRYIDKAEFPNPSKEVLIGIQEMKKPVAVCGLAVENTTNLITIKAKKRDILAFSTNTTGDTSPISLSSYSIRQDGLVVEGIKINITMLDTDKNYSAKASIPGLMIDNSAVGMRIDGGKLLPMYWPDGDWNRIAIPKKTRTLEFYLKSELDTNWQRVSVDLKSPTIKVYRKFPFPAK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044991_1	1.1\|25979\|42\|NZ_CP044991\|CRISPRCasFinder	25979-26020	42	NZ_CP044991	Deinococcus sp. AJ005 plasmid p115k, complete sequence	25979-26020	0	1.0
NZ_CP044991_2	2.1\|26133\|45\|NZ_CP044991\|CRISPRCasFinder	26133-26177	45	NZ_CP044991	Deinococcus sp. AJ005 plasmid p115k, complete sequence	26133-26177	0	1.0
NZ_CP044991_2	2.2\|26201\|55\|NZ_CP044991\|CRISPRCasFinder	26201-26255	55	NZ_CP044991	Deinococcus sp. AJ005 plasmid p115k, complete sequence	26201-26255	0	1.0
NZ_CP044991_2	2.3\|26279\|34\|NZ_CP044991\|CRISPRCasFinder	26279-26312	34	NZ_CP044991	Deinococcus sp. AJ005 plasmid p115k, complete sequence	26279-26312	0	1.0
NZ_CP044991_2	2.3\|26279\|34\|NZ_CP044991\|CRISPRCasFinder	26279-26312	34	NC_014035	Rhodobacter capsulatus SB 1003 plasmid pRCB133, complete sequence	79627-79660	7	0.794
NZ_CP044991_2	2.3\|26279\|34\|NZ_CP044991\|CRISPRCasFinder	26279-26312	34	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	565920-565953	10	0.706
NZ_CP044991_2	2.3\|26279\|34\|NZ_CP044991\|CRISPRCasFinder	26279-26312	34	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	600125-600158	10	0.706
NZ_CP044991_2	2.3\|26279\|34\|NZ_CP044991\|CRISPRCasFinder	26279-26312	34	NZ_CP021805	Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence	967414-967447	10	0.706
NZ_CP044991_2	2.3\|26279\|34\|NZ_CP044991\|CRISPRCasFinder	26279-26312	34	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	601336-601369	10	0.706

1. spacer 1.1|25979|42|NZ_CP044991|CRISPRCasFinder matches to NZ_CP044991 (Deinococcus sp. AJ005 plasmid p115k, complete sequence) position: , mismatch: 0, identity: 1.0

ttggcctcttttcccgcaaaggtatcgctagtttagaccccc	CRISPR spacer
ttggcctcttttcccgcaaaggtatcgctagtttagaccccc	Protospacer
******************************************

2. spacer 2.1|26133|45|NZ_CP044991|CRISPRCasFinder matches to NZ_CP044991 (Deinococcus sp. AJ005 plasmid p115k, complete sequence) position: , mismatch: 0, identity: 1.0

ggtcattttgggcaatcccgcaaaggtgtcgctacttcccttcca	CRISPR spacer
ggtcattttgggcaatcccgcaaaggtgtcgctacttcccttcca	Protospacer
*********************************************

3. spacer 2.2|26201|55|NZ_CP044991|CRISPRCasFinder matches to NZ_CP044991 (Deinococcus sp. AJ005 plasmid p115k, complete sequence) position: , mismatch: 0, identity: 1.0

cctgtgaaagcgatagcgactgtgtcacacggagaaatagcctgttgacagataa	CRISPR spacer
cctgtgaaagcgatagcgactgtgtcacacggagaaatagcctgttgacagataa	Protospacer
*******************************************************

4. spacer 2.3|26279|34|NZ_CP044991|CRISPRCasFinder matches to NZ_CP044991 (Deinococcus sp. AJ005 plasmid p115k, complete sequence) position: , mismatch: 0, identity: 1.0

aaggtgtctgctgcgccgtgccaatgctgttccg	CRISPR spacer
aaggtgtctgctgcgccgtgccaatgctgttccg	Protospacer
**********************************

5. spacer 2.3|26279|34|NZ_CP044991|CRISPRCasFinder matches to NC_014035 (Rhodobacter capsulatus SB 1003 plasmid pRCB133, complete sequence) position: , mismatch: 7, identity: 0.794

aaggtgtc---tgctgcgccgtgccaatgctgttccg	CRISPR spacer
---gtgtcgggggcggcgccgtgccaatgccgttcct	Protospacer
   *****    ** ***************.*****

6. spacer 2.3|26279|34|NZ_CP044991|CRISPRCasFinder matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 10, identity: 0.706

aaggtgtctgctgcgccgtgccaatgctgttccg	CRISPR spacer
tcccgatgtgctgcgcggtgccagtgctgttctg	Protospacer
     .* ******** ******.********.*

7. spacer 2.3|26279|34|NZ_CP044991|CRISPRCasFinder matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 10, identity: 0.706

aaggtgtctgctgcgccgtgccaatgctgttccg	CRISPR spacer
tcccgatgtgctgcgcggtgccagtgctgttctg	Protospacer
     .* ******** ******.********.*

8. spacer 2.3|26279|34|NZ_CP044991|CRISPRCasFinder matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 10, identity: 0.706

aaggtgtctgctgcgccgtgccaatgctgttccg	CRISPR spacer
acgtccggtgccgcgccgtgccaatgcttttcgc	Protospacer
* * .   ***.**************** ***

9. spacer 2.3|26279|34|NZ_CP044991|CRISPRCasFinder matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 10, identity: 0.706

aaggtgtctgctgcgccgtgccaatgctgttccg	CRISPR spacer
tcccgatgtgctgcgcggtgccagtgctgttctg	Protospacer
     .* ******** ******.********.*

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP044988

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044988_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044988_1

13727-13809

Orphan

Consensus_repeat	Method
GCGAAAGCGAATTCGTTCTGATTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044988_1

>merge|NZ_CP044988|1|13727-13809|CRISPRCasFinder
GCGAAAGCGAATTCGTTCTGATTCCCAGCCAAGTCGGAATGACCTGGAACTGAGGCGGCGAAAGCGAATTCGTTCTGGTTCCC

>NZ_CP044988|1|1|13727-13809|CRISPRCasFinder
GCGAAAGCGAATTCGTTCTGATTCCC	AGCCAAGTCGGAATGACCTGGAACTGAGGCG
GCGAAAGCGAATTCGTTCTGGTTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044988.1\|WP_151845362.1\|9172_9577_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044988.1\|WP_151845365.1\|11749_13444_+\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|226036
NZ_CP044988.1\|WP_151845367.1\|14053_15478_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044988.1\|WP_151845361.1\|8846_9083_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044988.1\|WP_151845364.1\|10232_11510_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP044988.1\|WP_151845359.1\|7623_7818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044988.1\|WP_151845366.1\|13466_13685_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044988.1\|WP_151845360.1\|8326_8665_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044988.1\|WP_151845368.1\|15538_16927_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226459
NZ_CP044988.1\|WP_151845357.1\|5944_6502_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|349760
NZ_CP044988.1\|WP_151845358.1\|6608_7286_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044988.1\|WP_151845363.1\|9674_10229_+\|hypothetical-protein	unknown	unknown	unknown

>NZ_CP044988.1|WP_151845366.1|13466_13685_+|hypothetical-protein
MKQDQAGIEKFLDGLLSAYLGKYDSRTEFENSLRVMAPLFERADDYKHIDDTEIISMGLSKFDEAVRTKLLN
>NZ_CP044988.1|WP_151845365.1|11749_13444_+|TraM-recognition-domain-containing-protein
MPFLFITGVFRMQPGPTLFVTIAGVSLILFYFSSMVPTGAYSGRFMRHKEAEKFLITREEEPYMLPVAALDGQPIGIKPYVLSKIQGELGHLTVIAPTRSGKGLLLTSHLLTWVESAIVLDIKGENWEKTSAARAELGPVYVLNPEGMGSRFDPIAELMELGTDSEAALLQAVNVILKPEEDTQPIFLLTAVPALRAGMRVAHALGEPVLPWVYAQSRAGMRAYVRNVQAQAERLGDWASIDDMTQYLGRPVAEVQDAQWADSKWMPAQAWANLTAALGRVCTEGVLKMTSGRDFSAADLKRRPTSVYLIWKEDMGEGLKDAFSLVSLALLKGLSRYADNHKGEVMTEVLFVVDEAGTFKVPDLPKLMATLAGRGVWLSPYFQNVVQMQRQYGENAEQEIINNSSAVVWYPSAEKSAGEYIEQFAGKESVVTTSASSEGTTTASTTDRPIITASEFSQLGENAVLVQFKNHQWLKAEPMRWFEFAHLKDRVQEKGVGGGPIAWSLSDYRSRIAPIRPVAQAQPQVRAITPAPAVRPAPPLPPPNAPAGWYNMDDEDEKSGQKLN
>NZ_CP044988.1|WP_151845364.1|10232_11510_+|hypothetical-protein
MGVVKGGYGRSSSGGVKSSKQATRYAANRKGEEQHQGGREIYDRDGVVSKDEAYRKIEAADQGGDKYHYRLTLSHAQTGEGVDHNATTRETMQRLEERHAAQGGAVTWHAVNHTDHTRHEHTHVIAVTDRRIGTADFANMRAEMDRSYERHTPRDIERVEQVRPQEQRQEVQVQATPEQQREEAQTTPEPQRPQAEPAQEQWEAQERTSPDPSAEQPERKQPQRQLEMDWIYTEEQYRDERYLAERPSLITSGEATREYDQYKQLEATLQPLERQELHTREMEWAREQRESGQRPELNQAYWQDHGAVIEDLRQSRSMTEGGRQRYMDSQADNRWMHRAVNERGLKGEALIQGYQARQELRRDERAAQEPQRQTRWGEDRRQHNAEQAQRFERQAQAWAERPARNPRQQQRQERQQDQYQGGRER
>NZ_CP044988.1|WP_151845363.1|9674_10229_+|hypothetical-protein
MTGNLGRVSKIRVRVNLLSIEVFCRVVRYFYPGKLLTSPPAHFEGDNYVAKRQISVWVEEDVAERIATLAKQEQISVSQFGGELIKRGLTGYADNIGWDFVGVRVEDAVKKEVGNMSDRLAQLLVRATLEGTATRALLVNDMMAACASDEQRDAVKRASNQAWTTAVDRMRKPVQGLKEILEGV
>NZ_CP044988.1|WP_151845362.1|9172_9577_+|hypothetical-protein
MAELKKLSELLSGVSAAEHYSIYRAFKQAIKAGELAAVPTIGTVELQRQKGGPLSVPEFLISGEPDDWLAQVQQRRQQPKSRALKHLVTLEDVQAGRVNFEEAAERYRASLQPKPKRRRRSKDQSDKPTDTAPN
>NZ_CP044988.1|WP_151845361.1|8846_9083_+|hypothetical-protein
MKRLPASLHSSSVSEKLVWLHIHSNPGQHSARSLAADLGGSSRTWANALSGLVKDKLLVVEKAPAGIHGGQYRVAPNL
>NZ_CP044988.1|WP_151845360.1|8326_8665_+|hypothetical-protein
MTIAKSEFSRDFSALELRDATADYRTLMGITKTRPEGSLLYSNMPKGQCRRRESAAEGLGLYLGYVMFDAILNDGCYDPQRLAQTVTDRLALIIQTANAPKPKRVKSRPPSE
>NZ_CP044988.1|WP_151845359.1|7623_7818_-|hypothetical-protein
MTAPKLETELPSLTHEDLQDLDRLLWALYDGTRDPDLQADILRHTGKLAELLGEMQPGDFLELA
>NZ_CP044988.1|WP_151845358.1|6608_7286_-|hypothetical-protein
MHTWMLEAPEHEVTPADLAVFAAAWDARDVGVLPGDLPRWLFLQWLTEQGYLLHGSQSGELTELVGAQKEYGQADEFSNTIGVYAASDGLWAMMYALRGPEVAQQSDMALQVLERGQWSTMRYFMSVAPRTPGGQDARALLASGFVYVLPRAGFAQSPPYDHDGLGHVQEAHWVNPHPVTPLLHIPVTPDDLPLPVCLHDAEQVKTRSKADPWGFPWLAATDDHA
>NZ_CP044988.1|WP_151845357.1|5944_6502_-|AAA-family-ATPase
MAEVVSVLSRKGGVGKTVTAMYTAALLKQMGRDVAVLDKDPEGSAGAWARAAGNLPFPVYPEGKSAQALRHAWVVVDTPPNDPRALGDAARIAARVIVVAKCNALEADRLIPTLDALAASGFAGPWGILLTQARGGLGREMQFALEEEELPVLGVIPHFVKYERAFGTLPEDLSDYQGVLAGVLA
>NZ_CP044988.1|WP_151845367.1|14053_15478_+|hypothetical-protein
MKNPEQGSFTDMVRQDARVAQDLVTVTPTLTPRQADRATKYLAMLNREAAPDDAAGTVLVAAPDVIERPARKGYAELSAERVERRTKSKAHHRAARKPAPPAVEATEGEDSANGPALWLLDALQFCEQQDAQVQTERARVFVTQKVQRQPLPRLSELLALELFRPKRGKGFGTAGAGALAVRLYELARVFLAARLYLYDKDGHPPKQVVMHLCAELLAESLGICDNTMREWTAQLTAKGFVYARHHYTSMTGKDGQRMTAIDGTLYAVSLAPGHVARLRYHDYKRQYRDLDADKAAGKTAYNAILNAERRFQEAQILECVQDDQFFIEGSSNPTGQMQAELLEQLRRWAVIPGNIDTQNPLKHDPAINDAAQAERLLNGVQDVVFLLPTLLEAHKSKRAALVGMMGAALARDLKDSHSRLYYCKVIWQAWQAEIEGRDGLQALAAQLQRLEVDRREWKGLRRPAALLASRLQMA
>NZ_CP044988.1|WP_151845368.1|15538_16927_+|AAA-family-ATPase
MNDVTCFSRIDMDFVKDDKPARWIIILGENGTGKSTILKMLALSLLGDRMSLDIVDRVQIARFKRNSSKSLPSTLLKVTPNTRDKNKIRGKTSYSSVFIIYINSGRNTGVKLGIPATTSFVNGEAEFDRLSKTMHSEDITSGWFSAGYGPWRRAPSTVTTGRRDDHDILLQTKSGRFASLFIDDISLSTFSNWIIDLEYRVLKDPSDAWSKNMMDIAISVLEISLKGLKFEGISQNREILFKGPDGIIAMEQLSDGYRSIAAWSGDLAKRLIEAYPESKDPLREEGVVLIDEIDIHLHPKWQREIVEHTRELFPNLQFIVTSHSPFVAQDVTDEDKLFITYRNENGVDIKEWDIPIGGWRVDQILTSKLFGLKTTRNENIETKEVERKNLLESMYNPKILFSKEDEDKLKKVEKWLDDNRSAPVGEDFGGFYSAADKFLDLLEKKVAKENAPSNTSTDTDDS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044988_1	1.1\|13753\|31\|NZ_CP044988\|CRISPRCasFinder	13753-13783	31	NZ_CP044988	Deinococcus sp. AJ005 plasmid p17k, complete sequence	13753-13783	0	1.0

1. spacer 1.1|13753|31|NZ_CP044988|CRISPRCasFinder matches to NZ_CP044988 (Deinococcus sp. AJ005 plasmid p17k, complete sequence) position: , mismatch: 0, identity: 1.0

agccaagtcggaatgacctggaactgaggcg	CRISPR spacer
agccaagtcggaatgacctggaactgaggcg	Protospacer
*******************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP044990

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044990_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044990_1

2992703-2992805

Orphan

Consensus_repeat	Method
GGCTTCCAGCGCATCGATACGGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044990_1

>merge|NZ_CP044990|1|2992703-2992805|CRISPRCasFinder
GGCTTCCAGCGCATCGATACGGGCCGTCAGGGCGGCAGTGTCGGCACCGGCGCTCATGTTGCCCATCTCGTTGATCTTGGCTTCCAGCGCGTCGATACGGGCC

>NZ_CP044990|1|1|2992703-2992805|CRISPRCasFinder
GGCTTCCAGCGCATCGATACGGGCC	GTCAGGGCGGCAGTGTCGGCACCGGCGCTCATGTTGCCCATCTCGTTGATCTT
GGCTTCCAGCGCGTCGATACGGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044990.1\|WP_151848032.1\|2986432_2986966_+\|2'-5'-RNA-ligase-family-protein	unknown	unknown	gnl\|CDD\|379265
NZ_CP044990.1\|WP_151848045.1\|2999284_3000247_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|223536
NZ_CP044990.1\|WP_151848044.1\|2997793_2998927_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP044990.1\|WP_151848042.1\|2996619_2997294_-\|diphthine--ammonia-ligase	unknown	unknown	gnl\|CDD\|238952
NZ_CP044990.1\|WP_151848629.1\|2994547_2995606_+\|phosphohydrolase	unknown	unknown	gnl\|CDD\|225831
NZ_CP044990.1\|WP_151848029.1\|2982571_2983552_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP044990.1\|WP_151848036.1\|2989266_2991432_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP044990.1\|WP_151848037.1\|2991428_2991788_-\|DUF1049-domain-containing-protein	unknown	unknown	gnl\|CDD\|377648
NZ_CP044990.1\|WP_151848039.1\|2993715_2994525_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180270
NZ_CP044990.1\|WP_151848033.1\|2987047_2987419_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044990.1\|WP_151848043.1\|2997312_2997807_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239217
NZ_CP044990.1\|WP_151848047.1\|3001430_3001631_+\|DUF2945-domain-containing-protein	unknown	unknown	gnl\|CDD\|378576
NZ_CP044990.1\|WP_151848046.1\|3000336_3000963_-\|DUF4384-domain-containing-protein	unknown	unknown	gnl\|CDD\|379557
NZ_CP044990.1\|WP_151848034.1\|2987577_2988210_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|212496
NZ_CP044990.1\|WP_151848035.1\|2988231_2989263_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132883
NZ_CP044990.1\|WP_151848041.1\|2996126_2996597_+\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|273638
NZ_CP044990.1\|WP_151848040.1\|2995666_2995990_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044990.1\|WP_151848031.1\|2984468_2986421_+\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP044990.1\|WP_151848030.1\|2983834_2984035_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274698
NZ_CP044990.1\|WP_151848028.1\|2981573_2982329_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372666

Protein	Function_ID	Function_description	E-value
NZ_CP044990.1\|WP_151848032.1\|2986432_2986966_+\|2'-5'-RNA-ligase-family-protein	gnl\|CDD\|379265	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily. This family contains proteins related to pfam02834. These proteins are likely to be enzymes, but they may not share the RNA ligase activity.	1.44501e-11
NZ_CP044990.1\|WP_151848045.1\|2999284_3000247_+\|homoserine-dehydrogenase	gnl\|CDD\|223536	COG0460, ThrA, Homoserine dehydrogenase [Amino acid transport and metabolism].	5.24121e-107
NZ_CP044990.1\|WP_151848044.1\|2997793_2998927_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	1.59903e-177
NZ_CP044990.1\|WP_151848042.1\|2996619_2997294_-\|diphthine--ammonia-ligase	gnl\|CDD\|238952	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.	5.06556e-55
NZ_CP044990.1\|WP_151848629.1\|2994547_2995606_+\|phosphohydrolase	gnl\|CDD\|225831	COG3294, COG3294, HD supefamily hydrolase [General function prediction only].	4.86249e-120
NZ_CP044990.1\|WP_151848029.1\|2982571_2983552_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.7915e-103
NZ_CP044990.1\|WP_151848036.1\|2989266_2991432_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	1.78483e-130
NZ_CP044990.1\|WP_151848037.1\|2991428_2991788_-\|DUF1049-domain-containing-protein	gnl\|CDD\|377648	pfam06305, LapA_dom, Lipopolysaccharide assembly protein A domain. This family includes a domain found in lipopolysaccharide assembly protein A (LapA). LapA functions along with LapB in the assembly of lipopolysaccharide (LPS). Domains in this family are also found in some uncharacterized bacterial proteins.	7.90793e-05
NZ_CP044990.1\|WP_151848039.1\|2993715_2994525_+\|enoyl-CoA-hydratase	gnl\|CDD\|180270	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase.	4.76957e-95
NZ_CP044990.1\|WP_151848043.1\|2997312_2997807_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	2.06076e-20
NZ_CP044990.1\|WP_151848047.1\|3001430_3001631_+\|DUF2945-domain-containing-protein	gnl\|CDD\|378576	pfam11160, DUF2945, Protein of unknown function (DUF2945). This family of proteins has no known function.	3.6565e-16
NZ_CP044990.1\|WP_151848046.1\|3000336_3000963_-\|DUF4384-domain-containing-protein	gnl\|CDD\|379557	pfam14326, DUF4384, Domain of unknown function (DUF4384). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	2.8882e-31
NZ_CP044990.1\|WP_151848034.1\|2987577_2988210_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|212496	cd11730, Tthb094_like_SDR_c, Tthb094 and related proteins, classical (c) SDRs. Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.73752e-62
NZ_CP044990.1\|WP_151848035.1\|2988231_2989263_+\|LD-carboxypeptidase	gnl\|CDD\|132883	cd07062, Peptidase_S66_mccF_like, Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	1.33349e-99
NZ_CP044990.1\|WP_151848041.1\|2996126_2996597_+\|transcription-elongation-factor-GreA	gnl\|CDD\|273638	TIGR01462, Transcription_elongation_factor_GreA, transcription elongation factor GreA. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreA differs functionally in that it releases smaller oligonucleotides. Because members of the family outside the Proteobacteria resemble GreA more closely than GreB, the GreB clade (TIGR01461) forms a plausible outgroup and the remainder of the GreA/B family, included in this model, is designated GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein. [Transcription, Transcription factors].	1.2608e-49
NZ_CP044990.1\|WP_151848031.1\|2984468_2986421_+\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP044990.1\|WP_151848030.1\|2983834_2984035_-\|hypothetical-protein	gnl\|CDD\|274698	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.	2.24551e-15
NZ_CP044990.1\|WP_151848028.1\|2981573_2982329_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|372666	pfam13668, Ferritin_2, Ferritin-like domain. This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	1.84397e-40

>NZ_CP044990.1|WP_151848037.1|2991428_2991788_-|DUF1049-domain-containing-protein
MRLVSFLQVLLLLAILAYLTLFTLENPALVRLPLPFGRGELSLSVGVTVALFALIGAAYAALLLFPPVWQERLRRRHERRERRAVEERLTATLQARLGAMPSALLTNSPVPGSDERQPL
>NZ_CP044990.1|WP_151848036.1|2989266_2991432_-|single-stranded-DNA-specific-exonuclease-RecJ
MKAVSPTAVPAARWLLAPPASREELLSTMRQWRVSPPLAQVLHGRGLTPALLDPPLVLTPNPALREAARRIVGAVRGKKRIRIHGDYDADGVSATAVLVLGLRALGANVHGFIPHRLNEGYGVHPDKVTEHAESCDLLVTVDCGVSNVDEVAALLKLGTEVIVTDHHTPGDNFPAALVVHPSLTGGYDPALHNLTGAGVAYHLLWAIHAELGLAEPRALSALATLGTVADVAPLIGENRALVRAGLEALRETELPGLRALLDSGRVQRPTARDVAFVLAPRINAAGRLGEADVALDLLTTPSRHEATRLAEYLEIRNVERRKLQDEMFAQALQIADPSDPALVVTHPEWHAGVMGIVASKLVETYHKPVFIVAQGKGSVRSTPGISAVNGLTYSRDLLKRYGGHTGAAGFSLDEAQFGAFRERIHAYVQQFPSPVPRVRLDAALPTLGATLELVDGASTFEPFGEGHLPPLWHVRDELTETRLVGKRGDSLQFRVGALRGIKYGEHDATPGERDLATGLVVSEWRGQTRLEYHAQALRPPAQVSLDLFVPDGLDLPRLNPKAAMQRLTAGASAYATPAVADYLRDNVPGVRLVEAGDLWSGDELILYALPTEDDLRRWLTSGGAVPPGKVAFALGPKTLSELEGALTRHHLSAPPANPLADATADEAHMARAADAYRHWQWAHHYRTLDNGGWTASVHAMLGLDLPLEGPNVQTAELALGD
>NZ_CP044990.1|WP_151848035.1|2988231_2989263_+|LD-carboxypeptidase
MSPTFLRPARLPPGSRIAALSLSSGFVTEVMGRYRAGVRQVADEFGWEITPAPNALRGENYLYAHPQARADDLHWALENPEMDGLLSMIGGDDSVRLLPFLNLDVIRAHPKPFLGFSDNTVTLLAFLRAGVMAYHGPALLTDLAENGGMHPFTVQGVRRTLIDEPQTFDLCPAPEWSEHFSDWGDETLQEIRHPFQPGDGWKWLQGDAPAQGHLIGGCLEVLDMLNGTPGWPVPELWHGAVLALETSEDVPAPNQVGYWLRNYAAQGILTQAAGLMLARPRGYTPNMVQELYGWVRRVLCEAGREGMPVVANVDFGHTSPQLTLPFGAQVRLDPAAGRVTVLP
>NZ_CP044990.1|WP_151848034.1|2987577_2988210_+|SDR-family-NAD(P)-dependent-oxidoreductase
MNTLILGATGGIGAATARALAGADTTLTLSGRDEAKLLALATELGATSHVADLGYESHVKALFDGLEGLDTLVYAAGAAMPEPLKDADPGKVRAVWNANYFGALWVLKHGLGRMNKGGRVYLLGARPELVTARGFSQYAASKAALARAAEIARMEARGVTVALVLPPAVDTELWAQVGKAPKGSISPQEVAQAIATDRAGAGELEIRVLG
>NZ_CP044990.1|WP_151848033.1|2987047_2987419_+|hypothetical-protein
MPEIRVNGLSVRPRRKRMALPDLGGFFMFFGVSGTDHGRAARLERRFELEHFSNVVTLDLASPLGPGQYVLRGLPHEANKRGWTVEGGDSATGHLSDDGLEELRAWMGQGNRRVQAEAIAPPS
>NZ_CP044990.1|WP_151848032.1|2986432_2986966_+|2'-5'-RNA-ligase-family-protein
MAPSYLLAALPPPELAARIQTFRAAHQLRDAAAVPHITVKARSGLLPELDWQANLREVVARHAPLPISVGGPRLFSNGTAVYLEAASVEGVDLHLTLLDALRPARFFGYEGPRLQLHLSLVLKRRGVELSELLTAAQTEFADLEREPLAFTARRITLMRKPGPGGIYAPLEEWPLLG
>NZ_CP044990.1|WP_151848031.1|2984468_2986421_+|acetate--CoA-ligase
MTHPTSSDHIDNVLHETRVIQPPADFAAQAKVTREEYDRRYRQSLDDPDTFWGEVAGELTWMKPWDQVLDWQEPHARWFVGGQTNLAYNALDRQVERGLGDKRAFIWEGEDGEVRTFTYSELLSQVKRAANALLALDVQSGDRVTLYLPLIPEAAIAMLACARIGAVHSVVFGGFSVSALADRINDCQSKLLITADAGLRRGGLVNLKANADDAAAKAPGLQHMLVVNRAGSNPSMQEGRDVWWHEALAAASDEHEAVALDSEHPLFVLYTSGSTGKPKGVLHTTGGYMVSTYLTMETVFDLKDDDVFWCTADVGWVTGHSYSVYGPLLNGATVVLYEGAPNHPDWGRFWDIVQKHKVTILYTAPTAIRALMRQGDEIPGRYDLSSLRLLGSVGEPINPEAWMWYARVIGGDRCPVIDTWWQTETGSIMLTTLPGAHAAKPGSAGLPMYGIEPAIMTRDGQELGPDDGGLLVIKRPWPSMLRTVYGDDERYRKSYWGEIPHVYFAGDGARRDADGYITVMGRVDDVLNVSGHRLGTMEIESALVAHPSVSEAAVVGRPDDIKGECVVAFVLPQGDQTIDPKELRAYVTREIGALARPDAIYIADALPKTRSGKIMRRFLRQIAAGKAIEGDTSTLEDPGVLERLAETNAV
>NZ_CP044990.1|WP_151848030.1|2983834_2984035_-|hypothetical-protein
MAGLLLGLGFTLIYIINFTPSLGGTGAPADLFLGISTTCIGTVGMVINFVVAFAVSRLTPAPSQHV
>NZ_CP044990.1|WP_151848029.1|2982571_2983552_+|RluA-family-pseudouridine-synthase
MSGVNASSPPSPLHLEATPGRLDAVLAALTDHSRSQVAGWIAGGHVQVDGGAALKSSLKLRGGEQLTVQVPPPPEAAVEAEQVPLDVLFEDETLIAVNKPPGMITHPAPGVRSGTLVNALLGRMELPRQLDFDGEGGYRPGIVHRLDKDTSGVIVVAKTVEAHARLAAAFKDRDTRKSYLAIAAGSWKATEPVQVDAPVGRHPVQRQRMTVGGANARDAQTLFTPLSAHPDGHGRTLALVRAQPRTGRTHQLRVHLAHLGSPILGDTVYGRASEVISRQALHAQFLELPHPMTGETLHLHAPAPDDLLSAWIALGGVLPDNLETLD
>NZ_CP044990.1|WP_151848028.1|2981573_2982329_-|twin-arginine-translocation-signal-domain-containing-protein
MTNAEISGGQATSRRKFMGYIGLAGAGAALVACSPQDQPTPPKELTPAEKAAKQDLEILNYALTLEYLEAEFYNMFAVGGKYATNLKDAQVKQYAAEIAGHENSHVKVLTDTIVSLKGTPVTKPTFDFGPLIGNKPINDELFLALAATFEPVGVRAYLGQVARLSNPALIVAAGKIHAVEANHVSAVQELRVKLGYNKTPLRQTDIAPQSAAKPTSLIAGDFDADYSPTPTFLWKELSMDQVLAIVKPVIK
>NZ_CP044990.1|WP_151848039.1|2993715_2994525_+|enoyl-CoA-hydratase
MTQPDTQLDEMEFENVQIDRHGPIAVLTVNRPRALNALNAETLGEISAAVDMIVEDAEIGALIITGGGDRAFVAGADIAEFKSLDGVYAGRELSLAGQDVMHQIATLPIPVIAAINGFALGGGLELALACDIRVASTHAKMGLPEVTLGLLPGFGGTQRLARLIGAGRALDMMLTARQVEAAEAFGMGLVNYVADDALSKSREVAEQILKNAPIALSLVKEAVRRGLDTTLEAGLEVEADLFGLLVATKDFGEGVDAFLNKRKADFQGE
>NZ_CP044990.1|WP_151848629.1|2994547_2995606_+|phosphohydrolase
MSRRPDQKFKLSVQAGNVQDVVGVQTEPSLSAGQPGRVVEFTTPRSKIIQEADAAIRDDLEHFPRALAAYTALATDPEALACWDMANYITMRKLGYNDHGRVHSFITGAASLAITELLLEGGVKPDIMDSGVGDADDVYLAVILGTMLHDIGNQIHRASHEQHGVALALPILDRIMGPLYADPFKRAKVRSFILGSINCHDLNPPPLTLEGGITAVADGTDITKGRGRKAFSLGSVDIHSISALAVDEVVIERGRNAPVLISVTMNNSGGIFQVEEILAPKVIRTPMRRYVELRAATRPEGEEQILSRVRLDGDHFVMDLENGQQVAVEVDDSQKRAQEALASALDTGVERR
>NZ_CP044990.1|WP_151848040.1|2995666_2995990_-|hypothetical-protein
MTRYDDDREIRGEVQDEGVDREILQDKMVAEDLLRQDTKADRRNPNDQPGFMDGIQGDWDGEVRQGDPNNLTGGDLEGDERGGEGTAHSGGVDGGPARSKPLPGDKK
>NZ_CP044990.1|WP_151848041.1|2996126_2996597_+|transcription-elongation-factor-GreA
MTQERITMTQRGYDKLAETLHHLKTVRREQISEYMGIAIADGDLSESAAYDEARMQQSENETRIVEIENQLERAEIIAGDASKGAGLGAKIKVRDEKGNERQFELVGTYEVDVPNGRVSDASPFGQALAGKREGDKVTVQLPKGTAKFEVLAVTYD
>NZ_CP044990.1|WP_151848042.1|2996619_2997294_-|diphthine--ammonia-ligase
MKGEKFVTSWSGGKDSALAFHRARRAGGIPLAVINMLDEAGRRSRSHGLRPEVLEAQASALGVPLRTARASWATYESEFTALLAGAAVDGATAAVFGDIDLAAHREWEEKVCAAAGLRVSLPLWLEPRRTLVDELLGLGFRALIVAVKEDALPARLLGRMLDAELVAEIEGLGADACGENGEYHTVVVDGPDFAQPLSLVPGPAGIHHTGEGFLRVATLDLVLA
>NZ_CP044990.1|WP_151848043.1|2997312_2997807_-|NUDIX-domain-containing-protein
MARRDLLVAAGILRDRFGRVLLVGNDWQGHGRVRHTLPGGVVENGETLPEALYREIFEETGLRLTGILHMAYTVHIEDERRGERAIAVAFEATWEGLLNPADPDGFIVEARFCTTEEALEKLESPPMREPLSDFLKTGEPGRFYAFKGWDGRGGLRIPALKPRP
>NZ_CP044990.1|WP_151848044.1|2997793_2998927_-|peptide-chain-release-factor-1
MSSRLQELQSEFGLVERRLGDPAALADGREYGKLTRRHRELLPLVTLLRERDGLETDLAGARELLADPDMKELATGEVKTINARLAEIESELEVLLLPTDPDDAKDVILELRAGAGGAEAGLFVTDLLRMYTRYAEGLNLKVNVMDANESDLGGASKVVAEVTGDSAFRAFKWERGVHRVQRVPATESAGRIHTSTVTVAVLPEVEQDEIHLDLSEVRIDVYRSQGAGGQSVNTTDSAVRAVYRAGTPDEIMVICQDGRSQIKNREKALVVLASRLAERERAARDELERNERASQVGSGDRSEKIRTYNYPQNRVTDHRLEGDDKNHPLDSVINGALGPVVAGLARAEKERQLMELADQDGTDQDEGTGRGGQYGAA
>NZ_CP044990.1|WP_151848045.1|2999284_3000247_+|homoserine-dehydrogenase
MRTVTVGVLGSGTVGQDVLNLIERRESVFSDMSVKIEISGVLVRDVNKVRDVPPGTRVTTDPGFLQECGVVIEAMGGVDRPLEMLLPYLRSGRPVITANKALLAERWDVLREYALAGSLYYEASVMAGTPVIGPMSTVLRASTFTRLQAVLNGTCLYILNQMEEGRDYADALAGAQALGYAETPPTLDVGGFDTAHKLAVLARFCADGNFPYSAVQVQGIEDITQKDIQDARAAGERIKLVAELERDGTGWRATVAPQRLPESHPLCTAGAGRNALMYEGEECGMLIFAGGGAGGMITASAMVGDLLDWVIGFPGHVPLH
>NZ_CP044990.1|WP_151848046.1|3000336_3000963_-|DUF4384-domain-containing-protein
MTAFPKTASLKKSALLLAVSAALLGLAAPAFAAPKISAQSIIVNPVATNLSARVWVNRDPSGTQNPSYRIGEHITLYTSVNENAYVYLFNVNPDGSTDQILPNRISSSNYVRAGQTRAFPASGDQFTFDVAGPYGLNRVLVIASRRALNLNELSSYQNGGNFAVVKPKTSQGLAQALSIVVDPVPSPVTQPVAQTDWISDTAYYTVGY
>NZ_CP044990.1|WP_151848047.1|3001430_3001631_+|DUF2945-domain-containing-protein
MTFKKGDQVSWNSHGGEARGRVVRVAHEDGEVSGFQYCATQDDPRYIIEVEGGKHVAHTADALSKA

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Crispr_ID: NZ_CP044990_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044990_2

3157345-3157521

Orphan

Consensus_repeat	Method
TGAGGTTGCCGCCGTTGACGT	CRT

3 spacers

The CRISPR arrays of NZ_CP044990_2

>merge|NZ_CP044990|2|3157345-3157521|CRT
TGAGATTGCCGCCGTTGACGCTGGCGTTCAGGCTGTGCGCGCCGCTCAGCGTGAGGTTGCCGCCGTTGACGTTCAGGTGCGTGGGGCCATTCACCTCGGCGGCGGTCAGGTTGCCGCCGTTGACCTCGGCCTTCAGGCTTTCAGCGCGGCCCATGCGGACGTTGCCGCCGTTCACGT

>NZ_CP044990|2|1|3157345-3157521|CRT
TGAGATTGCCGCCGTTGACGC	TGGCGTTCAGGCTGTGCGCGCCGCTCAGCG
TGAGGTTGCCGCCGTTGACGT	TCAGGTGCGTGGGGCCATTCACCTCGGCGGCGG
TCAGGTTGCCGCCGTTGACCT	CGGCCTTCAGGCTTTCAGCGCGGCCCATGC
GGACGTTGCCGCCGTTCACGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044990.1\|WP_151848173.1\|3165949_3166591_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|376526
NZ_CP044990.1\|WP_151848162.1\|3152724_3153876_-\|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|225044
NZ_CP044990.1\|WP_151848648.1\|3152085_3152631_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|181382
NZ_CP044990.1\|WP_151848170.1\|3162195_3163254_+\|agmatine-deiminase	unknown	unknown	gnl\|CDD\|377332
NZ_CP044990.1\|WP_151848651.1\|3160614_3162048_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP044990.1\|WP_151848650.1\|3158203_3159586_+\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_CP044990.1\|WP_151848163.1\|3154132_3154549_+\|OsmC-family-peroxiredoxin	unknown	unknown	gnl\|CDD\|224679
NZ_CP044990.1\|WP_151848166.1\|3156767_3157088_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044990.1\|WP_151848175.1\|3167301_3168111_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|234689
NZ_CP044990.1\|WP_151848164.1\|3155248_3155938_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274483
NZ_CP044990.1\|WP_151848161.1\|3150829_3151606_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
NZ_CP044990.1\|WP_151848165.1\|3156037_3156730_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044990.1\|WP_151848174.1\|3166651_3167260_-\|peroxidase-related-enzyme	unknown	unknown	gnl\|CDD\|130981
NZ_CP044990.1\|WP_075830005.1\|3151733_3152042_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044990.1\|WP_151848649.1\|3154556_3155126_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP044990.1\|WP_151848169.1\|3160185_3160530_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044990.1\|WP_151848171.1\|3163435_3164446_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133039
NZ_CP044990.1\|WP_151848168.1\|3159854_3160130_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044990.1\|WP_151848172.1\|3164749_3165907_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NZ_CP044990.1\|WP_151848160.1\|3149604_3150825_+\|benzoate/H(+)-symporter-BenE-family-transporter	unknown	unknown	gnl\|CDD\|281578

Protein	Function_ID	Function_description	E-value
NZ_CP044990.1\|WP_151848173.1\|3165949_3166591_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|376526	pfam01323, DSBA, DSBA-like thioredoxin domain. This family contains a diverse set of proteins with a thioredoxin-like structure pfam00085. This family also includes 2-hydroxychromene-2-carboxylate (HCCA) isomerase enzymes catalyze one step in prokaryotic polyaromatic hydrocarbon (PAH) catabolic pathways. This family also contains members with functions other than HCCA isomerisation, such as Kappa family GSTs, whose similarity to HCCA isomerases was not previously recognized. Some members have been annotated as dioxygenases, dehydrogenases, or putative glycerol-3-phosphate transfer proteins, but are most likely HCCA isomerase enzymes.	1.48183e-14
NZ_CP044990.1\|WP_151848162.1\|3152724_3153876_-\|sorbosone-dehydrogenase-family-protein	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	6.33424e-77
NZ_CP044990.1\|WP_151848648.1\|3152085_3152631_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	9.81149e-15
NZ_CP044990.1\|WP_151848170.1\|3162195_3163254_+\|agmatine-deiminase	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	1.56329e-163
NZ_CP044990.1\|WP_151848650.1\|3158203_3159586_+\|RNB-domain-containing-ribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	3.03329e-91
NZ_CP044990.1\|WP_151848163.1\|3154132_3154549_+\|OsmC-family-peroxiredoxin	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	1.43255e-33
NZ_CP044990.1\|WP_151848172.1\|3164749_3165907_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	0.000178979
NZ_CP044990.1\|WP_151848175.1\|3167301_3168111_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	3.17101e-41
NZ_CP044990.1\|WP_151848164.1\|3155248_3155938_-\|hypothetical-protein	gnl\|CDD\|274483	TIGR03223, Phn_opern_protn, putative phosphonate metabolism protein. This family of proteins is observed in the vicinity of other caharacterized genes involved in the catabolism of phosphonates via the3 C-P lyase system (GenProp0232), its function is unknown. These proteins are members of the somewhat broader pfam06299 model "Protein of unknown function (DUF1045)" which contains proteins found in a different genomic context as well.	1.90702e-08
NZ_CP044990.1\|WP_151848161.1\|3150829_3151606_-\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	1.16256e-99
NZ_CP044990.1\|WP_151848649.1\|3154556_3155126_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	2.43319e-88
NZ_CP044990.1\|WP_151848174.1\|3166651_3167260_-\|peroxidase-related-enzyme	gnl\|CDD\|130981	TIGR01926, peroxid_rel, uncharacterized peroxidase-related enzyme. This protein family with length of about 200 amino acids. One member, from Myxococcus xanthus, is a selenoprotein, with an otherwise conserved Cys replaced by Sec. This family is drawn narrowly enough to suggest that These proteins contain a domain described by TIGR00778, with a CxxCxxxHxxxxxxxG motif. Some members of that family are known to act as peroxidases or correlate with resistance to oxidative stress.	3.57132e-28
NZ_CP044990.1\|WP_151848171.1\|3163435_3164446_+\|glycosyltransferase	gnl\|CDD\|133039	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.48815e-77
NZ_CP044990.1\|WP_151848651.1\|3160614_3162048_+\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP044990.1\|WP_151848160.1\|3149604_3150825_+\|benzoate/H(+)-symporter-BenE-family-transporter	gnl\|CDD\|281578	pfam03594, BenE, Benzoate membrane transport protein.	9.62997e-135

>NZ_CP044990.1|WP_151848166.1|3156767_3157088_-|hypothetical-protein
MSASSSPRTVSAPLTVRSGKGYRVIRRVRLSAAEVPGPGLFGRFWQRLQAMLHVTPERWHAYQMTRQTGSDGDDLRGRVLMSGGRVLMVSSPGSHSSRRPPQSDLP
>NZ_CP044990.1|WP_151848165.1|3156037_3156730_-|hypothetical-protein
MKEKVKRLLDLVRAGRLSLEDAGPLLAALSAKLALTDSDRELIDSLLKRDELDTGQVAEHLLLLRGVRDVPPPPPRPPQPPGGFGNPRPEDQRGPQWTWDSGSRSRTGRGGIEGMVDRITDTVERAVEGVFEGKTPQYESQYQYGNSRSGSARILQIRVESSAGDEYSANLPVSLAPHLHKLIPPHGIRALESAGFSLETLQLLIESDPPPGELISAEDSAGNEVRISLK
>NZ_CP044990.1|WP_151848164.1|3155248_3155938_-|hypothetical-protein
MPDATAGTRFAVYLCPPAGSALYQVGSELLGFDVRADQPVPLPDFLPPEWQTDAGPFGFHLTVVEGFSTDPAWWPAIEAEARACVACLSPDTDLSLTNGRIDVWDDGETWVLRLDPSPALLVAHTLLLARLARFVTASPFAGQVAQGLYARPFEGARMSLLHTPRGLDTWEPHFTLVQPYGGHDPQALRRALEERLRPFTTQNYTSLTLFEKPEGQERWRVRAELPLGD
>NZ_CP044990.1|WP_151848649.1|3154556_3155126_-|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MRVTVATGNAGKVREIEAALADLNWDLQPVQGVPMPEETGATYAENAALKACTVALMTRTTALADDSGIEVEALNGEPGVYSARFGGRDSDLERNMYLLEKLRGQANRRARFVSVVILAHPNGQVESYRGELSGTLLEGPRGDGGFGYDPLFVPDGQTRTLAEMSVAEKQAISHRGKALAALKAAKRGS
>NZ_CP044990.1|WP_151848163.1|3154132_3154549_+|OsmC-family-peroxiredoxin
MTSTPKKTLNVTWLGEQRYLGVNESGQQLLIDNSATKIGVSPMEALLGALATCTAYDVVEVMKKRRTPLASYRIEVEGTRADTDPKRYTHITVRHIAGGEGITAEALERAAHLSHEKYCSVASSLNSEISVETRVETA
>NZ_CP044990.1|WP_151848162.1|3152724_3153876_-|sorbosone-dehydrogenase-family-protein
MLSHNTRRASLLGGLLTLALGSCAVVQRPDTTKPNAGLTLPAGFQADLYAQDLGKPRLMAFAPNGDLFVADEGKDPGTGRVLVLSDRDKNGVLDGAQTYLSALDQPNSLVFHGGYLYVANTDGVIRMPYKDGDLKPEATPEKIINLEAGERHHSRTIVFGPDGKLYVAMGSTCNVCEEENAQRATVWVYDADGKNGRPFATGLRNAVGLEWSGDTLYATANGRDMAGSDNPPESFFRVMDGKNYGWPYCYPVAAGEAQIWDKDFGKKTPAVCEAAQPSFATTTAHAAPLGMAFYTGKVFPAEYQGKMFVALHGSWNRPQKSGYSVITVDPKTGETKDFMTGFLGALGLSTSGRPADVQVAPDGALFVTDDGNGVMYRVTYKQP
>NZ_CP044990.1|WP_151848648.1|3152085_3152631_-|methyltransferase-domain-containing-protein
MTLPPNTDLLDIGAGEGALVREWRQHSTGRGEGIDPGSGAGIHRGVAEALPYMAGAFDVALLVRTLAHLPDAGAALREAWRVLRPGGQLVLATHDADHLRATWHALGRPADDGGPEQNLRAALIQAGHTALRLDVRVPIRVTAADARELVGTYGLSIGVNEHRFPVQDTAHLAVYVAYKTG
>NZ_CP044990.1|WP_075830005.1|3151733_3152042_+|hypothetical-protein
MADIKFLNEADGQEFQMTHPKAARVLGDIRKWAQGNGFEHVAFWRDTDDEHKLWVQLGEDRLNYWIHDSTFTEGKHETVEMQMDYARGAQRRSAAGYAKFDK
>NZ_CP044990.1|WP_151848161.1|3150829_3151606_-|exodeoxyribonuclease-III
MTVPTSPLKVTTLNANGIRSAMRKGLADWAAHEAPDVLLLQEVRAPPMPDALAHLGYQSAWFPAQKAGYSGVAILAKQPLEDVRVGMGHDEMDAEGRVLSARIGGVRYVSVYLPSGSSGEARQGFKDRVLGEFQDFASGLMAESEPVIIGGDYNVAHREIDIKNWRSNQKNSGFLPHEREWMTAHLASGLTDTHRATLGSAAEYTWWSNRAGAYANNVGWRIDYLLSAGVDLGNVRVDREAKLSDHAPLSGWLGTAQG
>NZ_CP044990.1|WP_151848160.1|3149604_3150825_+|benzoate/H(+)-symporter-BenE-family-transporter
MTAPVLASPAPRNFWQDTQSSAVLAGLIAVIIGWAGPNVLVYSVAQAAHLSDATAMSWLWAHAIFTGLAGIFLSLRTRMPILSTWSTPGIAFLVTALPGIPFAEAVGAFVTSAVLVFILGTFKPLTRALGAIPPHLAAALNAAILLPFGFKAAQAFGVQPALVGAMIVAYFLIRQISPRWAVAAVLVVGVGASAGLGLWHPAPISFALTQPQFVLPIFSLHATINLALPLTLLAFTGQFVPGFGVLKTNGYEPAPGPVLRTCGVASLGAAFVGCHNLTLGALLANIVSGPEAHPDAQKRYTAAIWAGGINICFGLFAGTFVHLMGILPAEALAALAGIALLGAMGSSLQGAFQGQSGSLAAPIIILVTLSGITPLGIGAAFWGILAGLAVYAAERRGVGKTVQAAK
>NZ_CP044990.1|WP_151848650.1|3158203_3159586_+|RNB-domain-containing-ribonuclease
MTLPELTSAQRTDVELLARGKAEKSRTLREMNLPETPESAHTLLLRLGIWNEAKTPYADRLGATLTHLSLDVPDFADENRLDLTHLPAYAIDDEGSRDPDDAIGIEALEGGLTRLWVHVADVAALVPPESELDLEARARGATLYLPDQTIGMLPDALIEKTGLGLHDTMPALSISLDLDADGNADAVDVALTTVRITRLTYMGAQAKLEAGEEPFVTLARLAHASKELRDSEGALSIELPEVKIKADENGASVTPLPKPEMRFVVQECMTLAGWAAAIYADDHDIPLPFATQADPSREVRGEGLGVQWARRKTLARTRFQPSPGPHSGMGLDLYAQATSPMRRYLDLVVHQQLRAALTGGEPLDGKVVAAHIAQATLNADATRQAERLSRKHHTLRFAAAQPEREWEAVVVDRRGPQATLLIPELAYDLPFSTPAPVGTALRIRLVDVNLPALSMRARLV
>NZ_CP044990.1|WP_151848168.1|3159854_3160130_+|hypothetical-protein
MTAVSRVLNDIVSLRMSHCRAEQAAGAAQYHLAVQHYRACLEAAECREDCQAVQFFALKLSGCYDQMGLRDKASQFRALASAEDEMPGLLG
>NZ_CP044990.1|WP_151848169.1|3160185_3160530_+|hypothetical-protein
MLKTLFLTLTLAALPAASATSTSITLTAGQTVTSGGAKITLLRFSDSRCPVKAICVMAGNVKASVFVVRGKSARLYTVYLPGVPIQTAAGKVVLKAATRLEDGSAQRLTFLITQ
>NZ_CP044990.1|WP_151848651.1|3160614_3162048_+|threonine-synthase
MKYVSTRGLRDLGGFSDVLLMGLAPDGGLAMPEHIPTFGPDELEELRGLKYSALAYAVMRPFIDDIPETDLRQMLRATYHPDVFHSAEITPLIRLGDSDLYLLELSNGPSLAFKDIAMQFLGHVFEYVLERRGEHLNILGATSGDTGSAAEYAMLSKARVNVFMLSPHGRMSAFQQAQMFSINEPNIFNITVDGVFDDCQDLVKEVNADAEFKARYTIGAVNSINWARVLAQAVYYFKAYFALNLPAGQQVDFSVPSGNFGNVFAGYLAKRMGLPIGQLVVASNENDVLHEFFSTGVYHVRRAAQVAQTSSPSMDIGKASNFERYLYLVAGEDGVQTRAWWDEVGGSRPVDLRGSGHWDAVKASRLVGGRSSHQDRLDTIRRADGEFGRLIDPHTADGLLVGERCARPGVPMVCLETALPAKFEATVEEAVNRIPPRPERFEGIEKLPRYFTVMDNDAAALKAFVVEKLAATLKATP
>NZ_CP044990.1|WP_151848170.1|3162195_3163254_+|agmatine-deiminase
MKHLSATDPTPRSLGFTMPPEWEPHAATWMSWPADDELWFGHLEAVRAEFAELVRTVARFEPVQLLTRDAYSRQDATERLAGADVTFHDVPLNDVWIRDNGPLFVTRASGEVSLVNWRFNAWGGKFDYAEDDRVPEAVARILDASHWDVPVVLEGGALEIGGAGVALTTRSCLLTETRNLGLDAGKYADWLREYLGVSKLLWLGAGLENDHTDGHIDTITRFTGERTIVTSVESDETDPNHAVMSANLAALREMTDENGEPFRIVELPLPAEYLEGAEGRLPPTYANFYIGNGFVVVPQYGDPNDARALEILAPLFPGREVIGLSSRAIIEGGGSFHCITQQQPVGTVWTGE
>NZ_CP044990.1|WP_151848171.1|3163435_3164446_+|glycosyltransferase
MQLYWNSFLLLNSHHGIWKGRIEFMKNNSTDCEIVLATFNGGKYLKDQLDSLEAQTVKCNILCHDDGSSDNTLVLLKERVLSNGYFRIISGPPMGSASQNFSLLLGNTTANYVFCADQDDVWLPDKVEHSLKVIQFYEQVYGSDTPLMVHSDLTLIDDCGKYIASSMWKYQNLDPEWGTQFNLLLTQNVVAGCSMVVNRALLNLALPIPATAIMHDWWLALIACAFGKVIWEAESKILYRQHATNVMGTEKYDKRFLLLKLISFGHSEKMAYRNHCRLRDAKQAEAFAKRFPTSSYAVQASLFAQLPQMHSWQRRHTILQQRFFKIGKIRNMDWLV
>NZ_CP044990.1|WP_151848172.1|3164749_3165907_+|GNAT-family-N-acetyltransferase
MSVFDLGGGYSARSIPLETYRDACVRLGSRIFGGTSLYAFGAETKALPPLGETFTWGIYVAEELIGWSFASQQSERAVYMADTGILPEHQGRGLYTRLLPHLLETFRAAGYTLVQSHHRATNNAVIIPKLRAGFFIQGLNLYEGGMSVPMTLSLDDTYRDAMHVRSGFQAAGGEVARRLGLPSTPQAESAAVPAVPLPEAQGDDTDLGGGYVLRPVAYETYYDIYIQLEDAVYSSVSLNWPAPARPEPVEYPRYAWLIGHQNEVVGWHYSRQWDARTAYMVNTALLPAHRGRGLYPRVLPPVLRTLQTQGYDLVRSHHHATNNAVLVPKLRAGFRLQGLQVDDHGVMAVLMLSFGTLYRDYMDVRSGLKQPGGEVARALGMNWKP
>NZ_CP044990.1|WP_151848173.1|3165949_3166591_-|thioredoxin-domain-containing-protein
MTSNTIFFDFVCPYAWRGLELAQVLRKAGEQQFTLKHFSLVQGNHPDNAGQKEPVWWLTDQPGDAGERFQKSSLLAFLAAVAAARQGEEASWEFSLALFRAVHEDKKSLDEDAVMAAAKAANLDMDQFAADRKDDDALRASLRSDLAESAEIGVFGTPTFVLPGGEAAYYRFENLTRDLETARQWWKLYGDVLHSGAGIATIKRAKNRPAKKA
>NZ_CP044990.1|WP_151848174.1|3166651_3167260_-|peroxidase-related-enzyme
MPWIETVPYADATGRLKTLYDRVKGPGNAVDNIMAMHSLRPHSMEGHMALYKAALHHSGNTLPKWLLETLGVWVSALNACDYCVEHHFAGLRRLLKDDARADAIRCAIEARDPDAVPLTDAQKQALRYAEKLTVNPSTVAESDVAALRSAGFTDGEILEINQVTAYFAYANRTVLGLGCSTDGDVLGLSPGDSDDPGNWNHS
>NZ_CP044990.1|WP_151848175.1|3167301_3168111_+|methyltransferase-domain-containing-protein
MNPDERAAQNVRLFDTLSAHYDRMGFLPLTALYLAQRFDAQPGETLLDVMCGTGTLALALADAVGAGGRVVGADLSPGMLAVARNKAAGQPQVSFVEADATALPLADAEFNGVACASGLFFVPEMDAALREWRRVVRPGGRMVFSSFGKGLMGDLPGRWRTALEGVGFHPGFPPLGRLPSPDAAAQLLRDAGFAEVTVDLQDLPYLLPTPQDRWDDIEAGMEGAPLAALPPEVRRQLQTDHLAELELLFAGQPLTVPVPVLVAAGVKPG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	MT701598	Streptomyces phage Sitrop, complete genome	24896-24925	4	0.867
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NC_041856	Streptomyces phage phiCAM, complete genome	29318-29347	4	0.867
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	355360-355389	5	0.833
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	822625-822654	5	0.833
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	825784-825813	5	0.833
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	169212-169241	5	0.833
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	216798-216827	5	0.833
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	293293-293322	5	0.833
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	825496-825525	6	0.8
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1006856-1006885	6	0.8
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	167775-167804	6	0.8
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	218235-218264	6	0.8
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	168348-168377	7	0.767
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1056772-1056801	7	0.767
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	217662-217691	7	0.767
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1075604-1075633	7	0.767
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	292832-292861	7	0.767
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1177611-1177640	7	0.767
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	397554-397583	7	0.767
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	300772-300801	7	0.767
NZ_CP044990_2	2.3\|3157471\|30\|NZ_CP044990\|CRT	3157471-3157500	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	918717-918746	7	0.767
NZ_CP044990_2	2.1\|3157366\|30\|NZ_CP044990\|CRT	3157366-3157395	30	NZ_CP034813	Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence	183081-183110	8	0.733

1. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to MT701598 (Streptomyces phage Sitrop, complete genome) position: , mismatch: 4, identity: 0.867

-tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
gtggcg-acaggctgagcgcgccgctcagca	Protospacer
 *****  ******* **************.

2. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NC_041856 (Streptomyces phage phiCAM, complete genome) position: , mismatch: 4, identity: 0.867

-tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
ctggcg-tcaggctgagcgcgctgctcagca	Protospacer
 ***** ******** ******.*******.

3. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 5, identity: 0.833

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgtgccgctgacgg	Protospacer
************** ***.****** *  *

4. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 5, identity: 0.833

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgagccgctggtcg	Protospacer
************** *** ****** . **

5. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 5, identity: 0.833

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgtgccgctgacgg	Protospacer
************** ***.****** *  *

6. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 5, identity: 0.833

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgcgccggttgtcg	Protospacer
************** ******** *.. **

7. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.833

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgcgccggttgtcg	Protospacer
************** ******** *.. **

8. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 5, identity: 0.833

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgcgccggttgtcg	Protospacer
************** ******** *.. **

9. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 6, identity: 0.8

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgagccggtgctcg	Protospacer
************** *** **** *   **

10. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 6, identity: 0.8

tggcgttcaggctgtgcgcgccgc-tcagcg	CRISPR spacer
tggcgttcaggctgtccgcgacgtggctgc-	Protospacer
*************** **** **.  * **

11. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 6, identity: 0.8

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgagccggttgtcg	Protospacer
************** *** **** *.. **

12. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgagccggttgtcg	Protospacer
************** *** **** *.. **

13. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.767

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgagccggaggccg	Protospacer
************** *** ****   . **

14. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.767

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttgaggctgagcgcgccggaggtcg	Protospacer
******* ****** ********   . **

15. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgagccggaggccg	Protospacer
************** *** ****   . **

16. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttgaggctgagcgcgccggaggtcg	Protospacer
******* ****** ********   . **

17. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttgaggctgagcgcgccggaggtcg	Protospacer
******* ****** ********   . **

18. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttcaggctgagcgagccggcggtcg	Protospacer
************** *** **** . . **

19. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
ccacgagcaggctgtgcgcgacgctcaccg	Protospacer
. .**  ************* ****** **

20. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
tggcgttgaggctgagcgcgccggaggtcg	Protospacer
******* ****** ********   . **

21. spacer 2.3|3157471|30|NZ_CP044990|CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cggccttcaggctttcagcgcggcccatgc	CRISPR spacer
gcgcacgccggcttccagcgcggcccatgc	Protospacer
  ** . * *****.***************

22. spacer 2.1|3157366|30|NZ_CP044990|CRT matches to NZ_CP034813 (Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tggcgttcaggctgtgcgcgccgctcagcg	CRISPR spacer
ccgcgtccaggctgtgcgcgccgccctcta	Protospacer
. ****.*****************.*  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1062159 : 1136760

Streptococcus_phage(18.18%)

transposase,tRNA,protease,integrase

attL 1109368:1109397|attR 1137032:1137061

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151846494.1\|1062159_1063134_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_151846495.1\|1063236_1064247_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_151846496.1\|1064272_1066288_-	elongation factor G	NA	NA	NA	NA
WP_151846497.1\|1066667_1068668_+\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	4.3e-77	30.3
WP_151846498.1\|1068736_1069765_-	hypothetical protein	NA	NA	NA	NA
WP_151846499.1\|1069909_1070749_+	RNase adapter RapZ	NA	NA	NA	NA
WP_151848443.1\|1070908_1072162_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	1.4e-41	39.2
WP_151846500.1\|1072229_1073540_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.9e-82	45.1
WP_151848444.1\|1073594_1075478_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_151846501.1\|1075504_1076182_-	hypothetical protein	NA	NA	NA	NA
WP_151846502.1\|1076336_1077962_-	hypothetical protein	NA	NA	NA	NA
WP_151846503.1\|1078056_1079061_-	lipoyl synthase	NA	NA	NA	NA
WP_151846504.1\|1079062_1079779_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_151846505.1\|1079931_1080456_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_151846506.1\|1080452_1081265_-	hypothetical protein	NA	NA	NA	NA
WP_151846507.1\|1081544_1082054_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_151846508.1\|1082182_1084273_-	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	1.6e-05	29.2
WP_151846509.1\|1084410_1084959_+	hydrolase	NA	NA	NA	NA
WP_151846510.1\|1085113_1085863_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_151848445.1\|1085920_1086409_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_151848446.1\|1086396_1086897_-	putative metal-dependent hydrolase	D0R7I3	Paenibacillus_phage	4.4e-15	44.7
WP_151846511.1\|1086926_1087274_-	transcriptional regulator	NA	NA	NA	NA
WP_151846512.1\|1087373_1087877_-	DUF4384 domain-containing protein	NA	NA	NA	NA
WP_151846513.1\|1088045_1089989_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	9.2e-109	46.5
WP_151848447.1\|1089957_1090674_-	EAL domain-containing protein	NA	NA	NA	NA
WP_151846514.1\|1091133_1092312_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_151846515.1\|1092561_1092915_+	hypothetical protein	NA	NA	NA	NA
WP_151846516.1\|1093135_1093792_-	glycosyltransferase	NA	NA	NA	NA
WP_151846517.1\|1093877_1095710_+\|tRNA	arginine--tRNA ligase	M1PAX3	Moumouvirus	2.7e-17	22.0
WP_151848448.1\|1095772_1096465_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_151846518.1\|1096825_1098010_-	acyltransferase family protein	NA	NA	NA	NA
WP_151846519.1\|1098095_1099229_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA
WP_151846520.1\|1099792_1100764_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.9e-23	30.7
WP_151846521.1\|1100756_1101629_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_075830279.1\|1101764_1102424_-	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_151846522.1\|1102549_1103926_-	potassium transporter KtrB	NA	NA	NA	NA
WP_151846523.1\|1104057_1105467_-	potassium transporter KtrB	NA	NA	NA	NA
WP_151846524.1\|1105666_1106743_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_151846525.1\|1106787_1107804_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_151846526.1\|1107813_1109496_-	DNA internalization-related competence protein ComEC/Rec2	Q0H255	Geobacillus_phage	7.9e-32	35.4
1109368:1109397	attL	NA	NA	NA	NA
WP_151846527.1\|1109835_1110780_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	1.9e-27	31.7
WP_151846528.1\|1111310_1115042_+	N-6 DNA methylase	NA	NA	NA	NA
WP_151846529.1\|1115034_1115607_+	RES domain-containing protein	NA	NA	NA	NA
WP_151846530.1\|1115909_1116284_-	hypothetical protein	NA	NA	NA	NA
WP_151846531.1\|1116843_1118790_-	hypothetical protein	NA	NA	NA	NA
WP_151846532.1\|1118793_1120455_-	AAA family ATPase	NA	NA	NA	NA
WP_151846533.1\|1120451_1122692_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_151846534.1\|1122688_1123663_-	hypothetical protein	NA	NA	NA	NA
WP_151846535.1\|1125243_1126833_-	hypothetical protein	NA	NA	NA	NA
WP_151846536.1\|1126861_1127884_-	hypothetical protein	NA	NA	NA	NA
WP_151846537.1\|1129653_1130712_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_151846538.1\|1130752_1132546_-	DUF4209 domain-containing protein	NA	NA	NA	NA
WP_151846539.1\|1133574_1133829_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_151846540.1\|1133958_1134315_+	hypothetical protein	NA	NA	NA	NA
WP_151846541.1\|1134314_1134974_+	hypothetical protein	NA	NA	NA	NA
WP_151846542.1\|1135087_1135435_+	hypothetical protein	NA	NA	NA	NA
WP_151846543.1\|1135640_1136760_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.3e-50	40.5
1137032:1137061	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2766987 : 2778989

Acinetobacter_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151847850.1\|2766987_2770251_+	DUF87 domain-containing protein	A0A218M9A2	Mycobacterium_phage	1.5e-79	45.4
WP_151847851.1\|2770528_2771578_+	hypothetical protein	A0A172Q0S8	Acinetobacter_phage	2.8e-27	30.9
WP_151847852.1\|2771574_2772531_+	hypothetical protein	NA	NA	NA	NA
WP_151847853.1\|2772715_2773171_+	Tellurite resistance TerB	K4NZ70	Pseudomonas_phage	5.3e-07	29.4
WP_151847854.1\|2773228_2773804_+	chemical-damaging agent resistance protein C	A0A2L1IWC0	Streptomyces_phage	3.0e-07	30.1
WP_151847855.1\|2773898_2775107_+	tellurium resistance protein TerA	NA	NA	NA	NA
WP_151847856.1\|2775107_2776343_+	VWA domain-containing protein	W8E9S8	Pseudomonas_phage	6.7e-12	25.8
WP_151847857.1\|2776475_2777054_+	TerD family protein	A0A2I7QY07	Vibrio_phage	2.1e-16	35.4
WP_151847858.1\|2777214_2777790_+	chemical-damaging agent resistance protein C	A0A2P1N0C0	Streptomyces_phage	7.4e-06	33.3
WP_151847859.1\|2777933_2778989_+	DUF475 domain-containing protein	A0A172Q0Y5	Acinetobacter_phage	6.8e-66	45.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP044989

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

277399 : 323695

Acinetobacter_phage(20.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_151845673.1\|277399_278383_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_151845570.1\|278696_279542_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.1e-33	33.8
WP_151845571.1\|279538_279799_-\|transposase	transposase	NA	NA	NA	NA
WP_151845572.1\|280073_280316_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_151845573.1\|280598_281713_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	6.8e-48	41.6
WP_151845574.1\|282014_282353_+	EAL domain-containing protein	NA	NA	NA	NA
WP_151845575.1\|282656_283286_-	hypothetical protein	NA	NA	NA	NA
WP_151845576.1\|283316_283952_+	hypothetical protein	NA	NA	NA	NA
WP_151845577.1\|283999_284254_-	hypothetical protein	NA	NA	NA	NA
WP_151845578.1\|285008_286016_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_151845674.1\|286414_287899_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_151845579.1\|288492_289506_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_151845580.1\|289505_290339_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_151845581.1\|290335_291349_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.9e-09	22.1
WP_151845582.1\|291345_292155_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.5e-20	33.3
WP_151845583.1\|292310_294833_+	glycoside hydrolase family 2 protein	NA	NA	NA	NA
WP_151845584.1\|294829_295444_+	hypothetical protein	NA	NA	NA	NA
WP_151845585.1\|295588_298063_+	glycoside hydrolase family 2 protein	NA	NA	NA	NA
WP_151845586.1\|298049_298898_+	TIM barrel protein	NA	NA	NA	NA
WP_151845587.1\|299179_301669_+	beta-glucosidase	NA	NA	NA	NA
WP_151845588.1\|302062_302398_-	hypothetical protein	NA	NA	NA	NA
WP_151845589.1\|302687_303650_+	hypothetical protein	NA	NA	NA	NA
WP_151845590.1\|303705_304488_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_151845591.1\|304550_306356_-	hypothetical protein	NA	NA	NA	NA
WP_151845592.1\|306301_307081_-	hypothetical protein	NA	NA	NA	NA
WP_151845675.1\|307097_307910_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_151845593.1\|307981_308908_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_151845594.1\|309000_310254_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_151845595.1\|310283_311315_-	ROK family protein	NA	NA	NA	NA
WP_151845596.1\|311194_312352_-	hypothetical protein	NA	NA	NA	NA
WP_151845676.1\|312348_314109_-	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_151845597.1\|314514_315291_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	2.9e-05	26.9
WP_151845598.1\|315287_316982_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_151845599.1\|316978_318511_+	hypothetical protein	NA	NA	NA	NA
WP_151845600.1\|318507_319269_+	UTRA domain-containing protein	NA	NA	NA	NA
WP_151845601.1\|319564_319891_-	hypothetical protein	NA	NA	NA	NA
WP_151845602.1\|320993_321806_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_151845603.1\|321836_322460_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_151845604.1\|322679_323153_-	phosphotransferase	NA	NA	NA	NA
WP_151845605.1\|323156_323396_-	hypothetical protein	NA	NA	NA	NA
WP_151845677.1\|323374_323695_-\|transposase	IS3 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044991

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP044988

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP044990

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP044989

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection