CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP027986	Enterobacter sichuanensis strain SGAir0282 chromosome, complete genome	1 crisprs	csa3,WYL,DEDDh,DinG,cas3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027986_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027986_1

1548687-1548891

Orphan

I-F

Consensus_repeat	Method
CACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP027986_1

>merge|NZ_CP027986|1|1548687-1548891|CRISPRCasFinder
CACTGCCGTACAGGCAGCTTAGAAATTTGCCAGTCAACGAAATCAGTCAGCGATTCGGTGCACTGCCGTACAGGCAGCTTAGAAAGCGCGGCACGATTGCGATCGCCATTTCGTTGCGTGCACAGCCGCACACGCAGCTCAGCAAAATAGAAAATAAGACCTGACAGTCGTCGCACCGTGCACTGTCGAACAGACAGCCCTGAAG

>NZ_CP027986|1|1|1548687-1548891|CRISPRCasFinder
CACTGCCGTACAGGCAGCTTAGAAA	TTTGCCAGTCAACGAAATCAGTCAGCGATTCGGTG
CACTGCCGTACAGGCAGCTTAGAAA	GCGCGGCACGATTGCGATCGCCATTTCGTTGCGTG
CACAGCCGCACACGCAGCTCAGCAA	AATAGAAAATAAGACCTGACAGTCGTCGCACCGTG
CACTGTCGAACAGACAGCCCTGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027986.1\|WP_094918135.1\|1551977_1553744_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP027986.1\|WP_006174393.1\|1545178_1545499_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP027986.1\|WP_045284513.1\|1538795_1540454_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP027986.1\|WP_025756021.1\|1561879_1563172_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP027986.1\|WP_059386168.1\|1559822_1560434_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP027986.1\|WP_025756025.1\|1553858_1554827_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP027986.1\|WP_025756028.1\|1549506_1550211_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP027986.1\|WP_047958146.1\|1542678_1544619_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP027986.1\|WP_059386165.1\|1550256_1551978_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP027986.1\|WP_008499993.1\|1544689_1544911_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP027986.1\|WP_025756022.1\|1560443_1561787_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP027986.1\|WP_014831269.1\|1545526_1547806_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP027986.1\|WP_155030922.1\|1556001_1559694_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP027986.1\|WP_047958145.1\|1541566_1542682_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP027986.1\|WP_002211347.1\|1549003_1549222_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP027986.1\|WP_155030920.1\|1548066_1548507_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP027986.1\|WP_000228469.1\|1555371_1555866_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP027986.1\|WP_025756038.1\|1537727_1538423_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP027986.1\|WP_047958144.1\|1540450_1541407_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP027986.1\|WP_155030919.1\|1536659_1537559_-\|LysO-family-transporter	unknown	unknown	gnl\|CDD\|225287

Protein	Function_ID	Function_description	E-value
NZ_CP027986.1\|WP_094918135.1\|1551977_1553744_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP027986.1\|WP_045284513.1\|1538795_1540454_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP027986.1\|WP_025756021.1\|1561879_1563172_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP027986.1\|WP_059386168.1\|1559822_1560434_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.95299e-116
NZ_CP027986.1\|WP_025756025.1\|1553858_1554827_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP027986.1\|WP_025756028.1\|1549506_1550211_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.51814e-139
NZ_CP027986.1\|WP_047958146.1\|1542678_1544619_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP027986.1\|WP_059386165.1\|1550256_1551978_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP027986.1\|WP_008499993.1\|1544689_1544911_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	6.50125e-48
NZ_CP027986.1\|WP_025756022.1\|1560443_1561787_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP027986.1\|WP_014831269.1\|1545526_1547806_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP027986.1\|WP_155030922.1\|1556001_1559694_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP027986.1\|WP_047958145.1\|1541566_1542682_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP027986.1\|WP_002211347.1\|1549003_1549222_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
NZ_CP027986.1\|WP_006174393.1\|1545178_1545499_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP027986.1\|WP_000228469.1\|1555371_1555866_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
NZ_CP027986.1\|WP_025756038.1\|1537727_1538423_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.39487e-146
NZ_CP027986.1\|WP_047958144.1\|1540450_1541407_-\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	4.27786e-119
NZ_CP027986.1\|WP_155030919.1\|1536659_1537559_-\|LysO-family-transporter	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	8.64199e-115

>NZ_CP027986.1|WP_155030920.1|1548066_1548507_+|hypothetical-protein
MTDINNFAQFYSELSLNPDLPTLAERCNLLTEILLDCKSLPQTQPVCRCLGAYLEEVKSGLTESMRDFQIVEFADEAEQPRQKEWLLEDTETKCDYCRALNHVLLVSHFDPDMLPHLTGLLHDIVHSMAADVVAPQRAETVVHIIS
>NZ_CP027986.1|WP_014831269.1|1545526_1547806_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPNQASDSSNQVNNNEEQAGGEDRMENFTTNLNQLARVGGIDPLIGRDKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVIADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDVTEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPASKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLRTLGNRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDQAKNELTYDFQSAAKHKPEAAH
>NZ_CP027986.1|WP_006174393.1|1545178_1545499_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA
>NZ_CP027986.1|WP_008499993.1|1544689_1544911_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPIEAETVA
>NZ_CP027986.1|WP_047958146.1|1542678_1544619_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDISTLDGDALAKLRREHFGFIFQRYHLLSHLNAAQNVEVPAVYAGVERKKRLERAQMLLTRLGLAERVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPGASRAAATKEALPPSTGWGQFSSGFREALAMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQSLKYDDLAAIQKQPWVNSATPAVSQNLRLRVGNVDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKANVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYTTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPVAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP027986.1|WP_047958145.1|1541566_1542682_+|macrolide-transporter-subunit-MacA
MNLKGKRRTLFLLLAVVVLAGGYWLWQVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAENQIREVEATLMELRAQRAQALAERNLAQVTLTRQQALAKTQAISKQDLDTATTELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQNAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTIPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVISENLPGAAK
>NZ_CP027986.1|WP_047958144.1|1540450_1541407_-|DUF535-domain-containing-protein
MSSIVDTPFSSLPQPKSGWQLFKNLAFGTLTPGLAWQNPAYRRKFMLRSLATPISTARLLTSLAKQPRLMQMLQVQPGLPCRLHRPWLTVKMDRQHALESLNWHYQTLSRQLPATLLAGYLSKPGYTLLTLTGKEEQQFTVRLCADAFLDKEGEATLAFCDRHNTVLAEMTFTLCQFAGKTTLFIGGLQGAKAHVPHELIQGATKACHGLFPKRLLLEAAMTLGTAFPVEQIVAVSNATHIYRSWRYRKKKEGKLLADYDSFWVSIGGEKQDNGHFLLPLVMPRKPMEEIASKKRAEYRRRYELLDSLIQQVNQATQR
>NZ_CP027986.1|WP_045284513.1|1538795_1540454_+|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEDDLYHFVRDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPLSPCWVPCDDGFHRIFYRLEGEMAENEGVLTLREFLDEKANPIPLDNIDDLARHLIRLTPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTSESRHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRITTTNSGELLSLTPVEHVCRLVRESSRVTAYRLGPGGMNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYASTVRSLLNNEREEERDHLTMLPAMDMEHFMYRQGFDDVFHRIAMVPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVEAVPTLLRKMFSRVLWLARGKAD
>NZ_CP027986.1|WP_025756038.1|1537727_1538423_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKEVIGYIVAQVVGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKHAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIVGGILGGVLYRTLLEKRD
>NZ_CP027986.1|WP_155030919.1|1536659_1537559_-|LysO-family-transporter
MFSGLLIILLPLIVGYLIPLHQESALRLINRFLSWIVYVILFFMGIRLAFLDNLATNLLAILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVIASSMVAGVINAFILDLPLKTGLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPVLMALFSA
>NZ_CP027986.1|WP_002211347.1|1549003_1549222_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP027986.1|WP_025756028.1|1549506_1550211_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPEQFHLSRSMKRFHAKSPYRVTLNHAFGQVIEGCAEDRYEGTWITRDIITAYHQLHELGYAHSIEVWQDGTLVGGMYGVAQGTLFCGESMFSRSVNASKTALLVFCQAFAQCGGRLIDCQVLNEHTASLGAVEIPRRQYIGHLDASRQEKLPRDFWVPRTLFMPYA
>NZ_CP027986.1|WP_059386165.1|1550256_1551978_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLTLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGTAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARFRQGELLNRVVADVDTLDHLYLRVISPIVGAFVVIVVVTLGLSFLDVPVALTLGGIMLLTLIILPPLFYRAGKSTGENLTRLRGDYRQQLTSWLQGQAELTIFGASRRYRARMESTELNWHEAQRRQSELTAFSQALMTLIGGIAVIAMLWLASGSVGGNTQPGPLIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITQIAEQEPEVTFSAGQTAVPAQVALALEDVTFAYDKQAQNALESISLSVNAGERIAILGRTGCGKSTLLQLLTRAWDPQRGQIRFNNTLLTDFSEQALRQTVSVVPQRVHLFSATLRDNLLLAAPHASDDALRAMLEQVGLHKLLEDEGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQILDLLANVMRGKTVLMVTHRLRGLASFDRIIVMDNGQIIEQGSHAELLTKQGRYYQFKQRL
>NZ_CP027986.1|WP_094918135.1|1551977_1553744_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MEKTRQQELTRWLKQQSVISRRWLTISRLLGFVSGLLIVAQAWLLARILNHMIMENIPREALLLPFIVLILVFILRAWVVWLRERVGFHAGQHIRYEIRRQVLDRLQEAGPAWIQGKPAGSWATLILEQIDDMHDYYARYLPQMALAVFVPLLIVIAIFPVNWMAALILLGTAPLIPLFMALVGMGAADANRRNFLALGRLSGHFLDRLRGMETLRIFGRGEAETDNIRLASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGALDFGHYGTAVTLSAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFLETPLAHPERGDVMLNAKEPVTVEAQDFCILSPEGKVLAGPLNFTLPAGQRVVLVGTSGSGKSSLLNALSGFMAYTGSLQINKTELRKLDPDAWRKQLSWVGQNPQLPASTLRENVLLARPDAREDELQSVLDRAWVSEFLPLLPQGVDTVVGDQSAGLSVGQAQRVAVARALLNPCQLMLLDEPAASLDAHSEQRVMEALNAASRQQTTLMVTHQLEGLADWDQIWVMENGRLVEQGDYASLVAAQGPFAALLANRQEDI
>NZ_CP027986.1|WP_025756025.1|1553858_1554827_-|thioredoxin-disulfide-reductase
MGTAKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEILFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDTFRAEKILIKRLMDKVASGNIVLHTNRTLEEVTGDQMGVAGLRIRDTQNSDNVETLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLAEQGK
>NZ_CP027986.1|WP_000228469.1|1555371_1555866_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP027986.1|WP_155030922.1|1556001_1559694_+|DNA-translocase-FtsK
MSQEYTEDKEVTLSKLSSGRRLLEALLIVIALFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGVPGAWLADTLFFIFGVMAYTLPVIIIGGCWFAWRHRQNDDYIDYFAVSLRLIGALALILTSCGLAAINADDIWYFASGGVIGSLLSSALQPMLHSSGGTLALLCIWAAGLTLFTGWSWVSIAEKIGSFILTILTFASNRTRRDDTWVDEDEYEDEEEDDAPVQRRESRRARILRGALARRQRVAEKFANPLGRKTDAALFSGKRMDEDEQVVYRAAGNQVDPDDVLFSGNRATPGDFDEYDPLLNGHSVTEPVAAATTAAQAYAAPVDAVMPSAPVSPPESVIQQPQVDWQTAPGVHTPEPVIAPEPESYIPVQQEQWQQPYQPPQPAYEPQHNPHYEQPVTQPYQEYVPEPVEPVQPYVAPQPEPEPEPEIVEEVKPARPPLYYFEEVEERRAREREQLAAWYQPVPEPVQEPVTKAAAVSAPQVDPTPSVAPVAESVKQATAAAAVAAPVFSLATGGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRMAEEKARESEYEDDADDMQQAELARQFAAQQNQRYGEEYQHDEPALDDDDAAEAELARQFAATQQQRYSGEQPAGANPFSLSDFEFSPMKDLVDDGPSEPLFTPSVMPEAEPVRQQPAQPSYAPQPQQPAPQAYAQPQQPQQPPQFQQPAPQPQESLIHPLLMRNGDSRPLQRPSTPLPSLDLLTPPPAEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNTKFRDNPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDAQHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTSPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDTESEGGGGGFDGGEELDPLFDQAVNFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP027986.1|WP_059386168.1|1559822_1560434_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAIACALLTSFVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGNAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFFNPFVEQATATWLKDATSNTPFMLIARNQASDWQQYNIKQTGDEFVLTPKGSNGNLKQFTINVSPNGTINQFGAVEQDDQRSSYQLKSQQNGAVDASKFTFTPPQGVTVDDQRK
>NZ_CP027986.1|WP_025756022.1|1560443_1561787_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTIFFIGATTENPSFELNSALLSRARVYLLKSLTVEDIEKVLTQAMDDKARGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVDDAGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMSDARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFPQEMAQTRYYHPTNRGLEGKIGEKLAWLAGQDQNSPIKRYR
>NZ_CP027986.1|WP_025756021.1|1561879_1563172_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVQTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDQAKAELDVLQAEIRDIALAIPNIPDDSVPVGKDENDNVEVKRWGTPREFDFEVRDHVTLGEMHTGLDFAAAVKLTGSRFVVMKGQIAHLHRALAQFMLDLHTEQHGYSETYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEVPLTNLVRDEIIDEDDLPIKLTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMDALEEMTGHAEKVLELLGLPYRRMALCTGDMGFGARKTFDLEVWVPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEIPEVLRPYMKGLQYIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3527119 : 3595735

Salmonella_phage(76.47%)

tail,plate,head,portal,capsid,lysis,integrase,tRNA

attL 3571903:3571917|attR 3601452:3601466

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025757629.1\|3527119_3528205_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_025757627.1\|3528409_3528829_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	3.5e-13	36.2
WP_045284614.1\|3528898_3529597_+	DTW domain-containing protein	NA	NA	NA	NA
WP_059386025.1\|3529632_3532296_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_025757622.1\|3532406_3533762_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_155031573.1\|3533806_3534130_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_047959264.1\|3534126_3535422_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.8e-44	30.6
WP_025759246.1\|3541028_3543602_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.2
WP_025759247.1\|3543731_3544463_-	polyphenol oxidase	NA	NA	NA	NA
WP_025759248.1\|3544459_3545440_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_023308867.1\|3545571_3546309_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_008502470.1\|3546577_3546919_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_100249759.1\|3547030_3547078_+	hypothetical protein	NA	NA	NA	NA
WP_155031574.1\|3547185_3548346_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_025759251.1\|3548342_3549215_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_025759253.1\|3549275_3550397_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_025759254.1\|3550407_3551478_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	9.0e-90	51.5
WP_025759255.1\|3551692_3552067_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_032672617.1\|3552220_3552757_+	DUF4154 domain-containing protein	NA	NA	NA	NA
WP_045286631.1\|3552749_3553970_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.4e-06	38.7
WP_025759259.1\|3553982_3554468_+	OmpA family protein	NA	NA	NA	NA
WP_155031575.1\|3554470_3555841_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_094918824.1\|3555879_3556284_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_002914145.1\|3556416_3556764_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_008502493.1\|3556807_3557575_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_032672618.1\|3557606_3558146_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003863133.1\|3558161_3558410_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_008502496.1\|3558526_3559888_-	signal recognition particle protein	NA	NA	NA	NA
WP_032623031.1\|3560054_3560846_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_025759264.1\|3560864_3562151_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_008502499.1\|3562206_3562800_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_155031576.1\|3562922_3563801_+	NAD(+) kinase	NA	NA	NA	NA
WP_155031577.1\|3563886_3565548_+	DNA repair protein RecN	NA	NA	NA	NA
WP_008502502.1\|3565686_3566025_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_025759268.1\|3566133_3566421_-	RnfH family protein	NA	NA	NA	NA
WP_025759269.1\|3566410_3566887_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_024908331.1\|3567004_3567487_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.8e-29	47.4
WP_155031578.1\|3568099_3568918_-	hypothetical protein	NA	NA	NA	NA
WP_155031579.1\|3569115_3569331_-	late control protein B	Q53ZE7	Salmonella_virus	7.4e-20	72.6
WP_155031580.1\|3570974_3571580_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.3e-109	92.5
WP_155031581.1\|3571572_3572481_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.2e-140	89.1
3571903:3571917	attL	NA	NA	NA	NA
WP_155031582.1\|3572467_3572827_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	3.1e-55	92.4
WP_155031940.1\|3572823_3573402_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.8e-105	95.8
WP_155031583.1\|3573502_3574198_+	hypothetical protein	NA	NA	NA	NA
WP_075287537.1\|3574199_3574631_-	phage virion morphogenesis protein	E5G6N4	Salmonella_phage	8.1e-66	92.9
WP_155031584.1\|3574641_3575073_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.3e-68	88.1
WP_155031586.1\|3575168_3575597_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	4.4e-56	82.9
WP_155031587.1\|3575593_3576109_-	glycoside hydrolase family protein	E5G6N1	Salmonella_phage	2.0e-71	75.9
WP_050870765.1\|3576089_3576305_-	hypothetical protein	E5G6N0	Salmonella_phage	4.4e-20	66.2
WP_000868184.1\|3576308_3576512_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_155031588.1\|3576511_3576976_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.6e-78	90.9
WP_155031589.1\|3577069_3577720_-	hypothetical protein	A0A1S6KZX1	Salmonella_phage	3.6e-110	95.4
WP_155031590.1\|3577723_3578785_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	4.2e-188	94.6
WP_155031591.1\|3579777_3581544_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	94.6
WP_155031592.1\|3581543_3582578_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.0e-179	89.8
WP_155031593.1\|3582626_3583517_-	hypothetical protein	NA	NA	NA	NA
WP_155031594.1\|3583522_3584509_-	DGQHR domain-containing protein	NA	NA	NA	NA
WP_155031596.1\|3585280_3587635_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	88.3
WP_155031597.1\|3587631_3588462_-	hypothetical protein	A0A0M4RCP6	Salmonella_phage	4.2e-127	78.7
WP_155031598.1\|3589309_3589537_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	3.6e-33	88.0
WP_162138795.1\|3589536_3589743_-	DUF2732 family protein	A0A0M3UL87	Salmonella_phage	1.6e-16	68.7
WP_155031599.1\|3589831_3590173_-	DUF5347 family protein	E5G6L5	Salmonella_phage	3.0e-47	83.2
WP_155031600.1\|3590136_3590337_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	1.3e-23	80.0
WP_155031601.1\|3590344_3590854_-	hypothetical protein	A0A1S6L008	Salmonella_phage	7.6e-79	87.6
WP_000102106.1\|3590886_3591129_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
WP_155031602.1\|3591248_3591881_+	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.1e-66	60.0
WP_155031603.1\|3591883_3592903_+\|integrase	tyrosine-type recombinase/integrase	A0A1S6L016	Salmonella_phage	1.3e-186	92.0
WP_155031604.1\|3592904_3594191_+	hypothetical protein	E5G6K9	Salmonella_phage	3.3e-70	36.7
WP_155031606.1\|3594532_3595735_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	3.2e-104	49.9
3601452:3601466	attR	NA	NA	NA	NA

DBSCAN-SWA_2

4007900 : 4045659

Erwinia_phage(34.88%)

tail,plate,head,portal,capsid,lysis,integrase,terminase,tRNA

attL 4014003:4014048|attR 4046673:4046718

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025758545.1\|4007900_4008914_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.8e-108	58.3
WP_001144069.1\|4009150_4009366_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_025758547.1\|4009480_4011226_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-76	39.0
WP_025758549.1\|4011391_4013239_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	6.4e-35	32.6
WP_025758550.1\|4013340_4013847_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
4014003:4014048	attL	NA	NA	NA	NA
WP_095450178.1\|4014205_4014424_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	7.8e-33	84.7
WP_155031731.1\|4014492_4015659_-	phage late control D family protein	Q6K1G4	Salmonella_virus	4.1e-181	82.2
WP_095450176.1\|4015655_4016120_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	1.3e-58	69.5
WP_155031732.1\|4016131_4018579_-\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	8.7e-306	74.2
WP_032658721.1\|4018568_4018691_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	2.2e-13	89.7
WP_155031733.1\|4018723_4019032_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.4e-27	75.9
WP_023209060.1\|4019092_4019611_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.0e-78	82.0
WP_155031734.1\|4019623_4020817_-\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	3.1e-184	80.4
WP_155031735.1\|4020941_4021364_-\|tail	phage tail protein	Q9MCR5	Enterobacteria_phage	3.6e-10	61.2
WP_155031736.1\|4021364_4023353_-\|tail	phage tail protein	Q7Y4D4	Escherichia_virus	1.4e-91	80.5
WP_047352498.1\|4023364_4023895_-\|tail	phage tail protein I	Q37841	Escherichia_phage	1.6e-92	88.6
WP_155031737.1\|4023887_4024796_-\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	1.4e-136	82.5
WP_155031738.1\|4024801_4025152_-\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	1.8e-39	72.4
WP_155031739.1\|4025148_4025784_-\|plate	phage baseplate assembly protein V	S4TUB5	Salmonella_phage	9.1e-90	79.2
WP_155031740.1\|4025867_4026938_+	hypothetical protein	NA	NA	NA	NA
WP_155031741.1\|4026972_4027425_-	phage virion morphogenesis protein	O80313	Escherichia_phage	1.2e-48	72.0
WP_155031742.1\|4027417_4027885_-\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	2.2e-61	71.6
WP_039266933.1\|4027847_4028006_-	hypothetical protein	Q6K1H9	Salmonella_virus	1.5e-14	76.9
WP_155031743.1\|4027980_4028406_-\|lysis	LysB family phage lysis regulatory protein	A0A218M4K2	Erwinia_phage	1.3e-44	69.9
WP_155031744.1\|4028402_4028912_-	glycoside hydrolase family protein	A0A218M4K3	Erwinia_phage	2.3e-80	85.7
WP_017382980.1\|4028895_4029117_-	hypothetical protein	A0A218M4L5	Erwinia_phage	7.1e-26	74.0
WP_006175797.1\|4029107_4029311_-\|tail	tail protein X	A0A218M4L8	Erwinia_phage	1.9e-25	79.1
WP_047352507.1\|4029310_4029817_-\|head	head completion/stabilization protein	O80306	Escherichia_phage	2.6e-63	72.0
WP_155031745.1\|4029916_4030672_-\|terminase	terminase	Q6K1I5	Salmonella_virus	2.3e-76	65.7
WP_155031746.1\|4030675_4031743_-\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	4.3e-169	83.1
WP_155031747.1\|4031798_4032641_-\|capsid	GPO family capsid scaffolding protein	S4TP53	Salmonella_phage	2.8e-110	71.5
WP_155031748.1\|4032806_4034576_+	oxidoreductase	A0A218M4M1	Erwinia_phage	3.0e-300	84.9
WP_155031749.1\|4034577_4035603_+\|portal	phage portal protein	Q37851	Escherichia_phage	1.0e-167	83.3
WP_155031750.1\|4036029_4036929_+	hypothetical protein	NA	NA	NA	NA
WP_155031751.1\|4037008_4037740_-	hypothetical protein	Q37850	Escherichia_phage	6.7e-129	94.2
WP_155031752.1\|4037822_4038263_-	DinI-like family protein	A0A218M4I0	Erwinia_phage	8.0e-69	98.5
WP_155031753.1\|4038381_4040601_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	95.3
WP_155031754.1\|4040597_4041842_-	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	2.3e-44	37.3
WP_155031755.1\|4041838_4042111_-	DUF5405 family protein	A0A0M4R2Q0	Salmonella_phage	4.1e-31	71.3
WP_155031756.1\|4042111_4042333_-	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	1.6e-33	97.3
WP_155031757.1\|4042332_4042560_-	DUF2732 family protein	A0A0M3UL87	Salmonella_phage	2.6e-31	98.7
WP_000963463.1\|4042627_4042966_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	7.3e-54	94.6
WP_155031758.1\|4042929_4043130_-	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	3.9e-31	97.0
WP_155031759.1\|4043137_4043647_-	hypothetical protein	A0A0M4QWN1	Salmonella_phage	2.8e-89	98.2
WP_001630878.1\|4043677_4043941_-	hypothetical protein	A0A218M4I5	Erwinia_phage	3.1e-44	100.0
WP_155031760.1\|4044070_4044649_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	1.3e-63	64.1
WP_155031761.1\|4044648_4045659_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	5.9e-192	98.2
4046673:4046718	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage