CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP020337	Pseudomonas sp. KUIN-1	8 crisprs	DEDDh,PD-DExK,csa3,cas3,DinG	1	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP020337_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP020337_1

489585-489696

Orphan

Consensus_repeat	Method
AAGTCCGCTCTTGATTCTGGCCGAAGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP020337_1

>merge|NZ_AP020337|1|489585-489696|CRISPRCasFinder
AAGTCCGCTCTTGATTCTGGCCGAAGGCCGCAGGAGCGACCGGGGCGGCGACCCGCTTTGTTCGCGAAGGCTCGTCATGCAGAAGTCCGCTCTGGATTCTGGCCGAAGGCCG

>NZ_AP020337|1|1|489585-489696|CRISPRCasFinder
AAGTCCGCTCTTGATTCTGGCCGAAGGCCG	CAGGAGCGACCGGGGCGGCGACCCGCTTTGTTCGCGAAGGCTCGTCATGCAG
AAGTCCGCTCTGGATTCTGGCCGAAGGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP020337.1\|WP_116886854.1\|490871_492548_+\|malonate-decarboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|379906
NZ_AP020337.1\|WP_011266400.1\|485916_486462_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226995
NZ_AP020337.1\|WP_003316680.1\|482037_482487_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|238329
NZ_AP020337.1\|WP_011266401.1\|486458_486713_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180033
NZ_AP020337.1\|WP_011266403.1\|488774_489554_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_AP020337.1\|WP_116886857.1\|482552_483500_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|226712
NZ_AP020337.1\|WP_103713768.1\|493716_494568_+\|biotin-independent-malonate-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235954
NZ_AP020337.1\|WP_024640819.1\|495358_495997_+\|malonate-decarboxylase-holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234936
NZ_AP020337.1\|WP_024640367.1\|490072_490468_-\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829
NZ_AP020337.1\|WP_003402948.1\|496998_497415_+\|malonate-transporter-subunit-MadL	unknown	unknown	gnl\|CDD\|367674
NZ_AP020337.1\|WP_116886856.1\|483496_484231_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_AP020337.1\|WP_003402969.1\|486957_487770_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_AP020337.1\|WP_003316694.1\|493424_493724_+\|malonate-decarboxylase-subunit-delta	unknown	unknown	gnl\|CDD\|179253
NZ_AP020337.1\|WP_103713769.1\|494564_495365_+\|biotin-independent-malonate-decarboxylase-subunit-gamma	unknown	unknown	gnl\|CDD\|369102
NZ_AP020337.1\|WP_162886177.1\|484223_485906_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|223442
NZ_AP020337.1\|WP_003316688.1\|486722_486983_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|181682
NZ_AP020337.1\|WP_024641099.1\|487745_488465_-\|beta-ketoacyl-synthase-chain-length-factor	unknown	unknown	gnl\|CDD\|379349
NZ_AP020337.1\|WP_103713767.1\|492547_493423_+\|triphosphoribosyl-dephospho-CoA-synthase	unknown	unknown	gnl\|CDD\|234927
NZ_AP020337.1\|WP_003402947.1\|497416_498181_+\|malonate-transporter-subunit-MadM	unknown	unknown	gnl\|CDD\|129890
NZ_AP020337.1\|WP_011266411.1\|495993_496929_+\|malonate-decarboxylase-subunit-epsilon	unknown	unknown	gnl\|CDD\|132175

Protein	Function_ID	Function_description	E-value
NZ_AP020337.1\|WP_116886854.1\|490871_492548_+\|malonate-decarboxylase-subunit-alpha	gnl\|CDD\|379906	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter. Mal_decarbox_Al is a family of Na+-transporting carboxylic acid decarboxylases.	0
NZ_AP020337.1\|WP_011266400.1\|485916_486462_-\|membrane-protein	gnl\|CDD\|226995	COG4648, COG4648, Predicted membrane protein [Function unknown].	1.68462e-37
NZ_AP020337.1\|WP_003316680.1\|482037_482487_-\|acyl-CoA-thioesterase	gnl\|CDD\|238329	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).	6.06055e-28
NZ_AP020337.1\|WP_011266401.1\|486458_486713_-\|acyl-carrier-protein	gnl\|CDD\|180033	PRK05350, PRK05350, acyl carrier protein; Provisional.	1.4645e-38
NZ_AP020337.1\|WP_011266403.1\|488774_489554_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.95588e-48
NZ_AP020337.1\|WP_116886857.1\|482552_483500_-\|glycosyl-transferase	gnl\|CDD\|226712	COG4261, COG4261, Predicted acyltransferase [General function prediction only].	1.91102e-84
NZ_AP020337.1\|WP_103713768.1\|493716_494568_+\|biotin-independent-malonate-decarboxylase-subunit-beta	gnl\|CDD\|235954	PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.	7.72862e-167
NZ_AP020337.1\|WP_024640819.1\|495358_495997_+\|malonate-decarboxylase-holo-ACP-synthase	gnl\|CDD\|234936	PRK01293, PRK01293, phosphoribosyl-dephospho-CoA transferase; Provisional.	2.31203e-97
NZ_AP020337.1\|WP_024640367.1\|490072_490468_-\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	3.31991e-24
NZ_AP020337.1\|WP_003402948.1\|496998_497415_+\|malonate-transporter-subunit-MadL	gnl\|CDD\|367674	pfam03817, MadL, Malonate transporter MadL subunit.	2.59319e-56
NZ_AP020337.1\|WP_116886856.1\|483496_484231_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.86571e-36
NZ_AP020337.1\|WP_003402969.1\|486957_487770_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	4.13049e-33
NZ_AP020337.1\|WP_003316694.1\|493424_493724_+\|malonate-decarboxylase-subunit-delta	gnl\|CDD\|179253	PRK01220, PRK01220, malonate decarboxylase subunit delta; Provisional.	2.22285e-66
NZ_AP020337.1\|WP_103713769.1\|494564_495365_+\|biotin-independent-malonate-decarboxylase-subunit-gamma	gnl\|CDD\|369102	pfam06833, MdcE, Malonate decarboxylase gamma subunit (MdcE). This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyzes the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase.	5.41411e-93
NZ_AP020337.1\|WP_162886177.1\|484223_485906_-\|AMP-binding-protein	gnl\|CDD\|223442	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism].	4.4769e-26
NZ_AP020337.1\|WP_003316688.1\|486722_486983_-\|acyl-carrier-protein	gnl\|CDD\|181682	PRK09184, PRK09184, acyl carrier protein; Provisional.	4.83973e-23
NZ_AP020337.1\|WP_024641099.1\|487745_488465_-\|beta-ketoacyl-synthase-chain-length-factor	gnl\|CDD\|379349	pfam13723, Ketoacyl-synt_2, Beta-ketoacyl synthase, N-terminal domain.	1.52943e-90
NZ_AP020337.1\|WP_103713767.1\|492547_493423_+\|triphosphoribosyl-dephospho-CoA-synthase	gnl\|CDD\|234927	PRK01237, PRK01237, triphosphoribosyl-dephospho-CoA synthase; Validated.	1.35713e-156
NZ_AP020337.1\|WP_003402947.1\|497416_498181_+\|malonate-transporter-subunit-MadM	gnl\|CDD\|129890	TIGR00808, malonate_transporter, malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.34774e-121
NZ_AP020337.1\|WP_011266411.1\|495993_496929_+\|malonate-decarboxylase-subunit-epsilon	gnl\|CDD\|132175	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.	1.27757e-107

>NZ_AP020337.1|WP_011266403.1|488774_489554_+|ParA-family-protein
MRRVVFNQKGGVGKSSIACNLAAVSAHEGYRTLLIDLDAQANSTQYLTGLTGQDIPMGIAEFFKNTLSGSPVAKKNHVDIYETPFDNLHVVTATAELADLQPKLEAKHKINKLRKLLDELSEDYERIYLDTPPALNFYAVSALIASDRVLIPFDCDSFSRQALYGLMREIEELKEDHNEGLQVEGIIVNQFQPRASLPQQMLDELIAEGLPVLPVYLNASVKMRESHQANLPLIHLDPRHKLTQQFMELHHLLETNAHP
>NZ_AP020337.1|WP_024641099.1|487745_488465_-|beta-ketoacyl-synthase-chain-length-factor
MITFNIARWQAWAPGLASAEDWQRWSLDPTLLETSDAAPDVSFLPAMQRRRLGRMARMAFAVGWPLTEGLGRVPLVFVSRHGETPRTFEILRDLAASEPLSPTQFSLSVHNAVIGLWSIMRGETSEMTALAATGDGLEYGAFEAAALLAEGAEAVLLVVTEEQPPQAYAQWIDDVPFPYAVGLLLTPGNEWQLSLNTDTQGTTRTQWPHALNLLRALHTDQSVCLHPWNNRLWNWQRSH
>NZ_AP020337.1|WP_003402969.1|486957_487770_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MELATQSLKKGRDAYYWRLLATGISFALFGLSGLCLRLFVFPVLGCLPGNVASHQRRARRTISRLFWLFIRIMARMRVLTYDVQGAEKLGRPGQMIIANHPSLIDVVFLIGLVRDANCVVKRSLWENPFTRGPVRATGYISNDGSMDMLDAAVERLQSGQTLIIFPEGTRTQPGQPPVFHRGAAAIALRGASVITPVTIKVQPTTLTKAEPWYRIPQRRVHFTLRVGADIDPTAFSALGPPPLASRKLNDYLHDYFTKELASDERSAPGH
>NZ_AP020337.1|WP_003316688.1|486722_486983_-|acyl-carrier-protein
MSDLHQDIKLLIIDALGLEDITPEDIGNDMTLFGEGLGLDSVDALELGLAIQKRYGIRIDADAKDTRNHFASVDSLAAFVSARQPA
>NZ_AP020337.1|WP_011266401.1|486458_486713_-|acyl-carrier-protein
MQTREDIFEILRAAMVELFELEPERVTLEANLYQDLEIDSIDAVDLIDHIKRKTGKKIAAEEFKSVRTVKDVVEAVYKLVNTAE
>NZ_AP020337.1|WP_011266400.1|485916_486462_-|membrane-protein
MKRLIGLILVLAGVLYPFAVYWGTEHFAPWQFALLLGSLWLARALTGERRQGSLAMAIVALIFCVVLGALDSHMMLRWYPVLVSTFMLGLFGSSLVYGPPIVEKMARLNRPDLPEAGIRYTRKVTQIWCLFFLVNGLTSAILTLWAPLSWWTLYTGLISYGLMGVLFAVEWIVRPPSAGGK
>NZ_AP020337.1|WP_162886177.1|484223_485906_-|AMP-binding-protein
MNWLNLEHLLLDALPDRLLTLAPTLDHAQFRDQALSVAAGLQARGITHLAVHLEDAADLAIALFAAWRADVHVLLPADLQGQTRERWANQVDLWLTDLPGDTQLSDLRAAPLPAAALDLDQCRLSLCTSGSSGEPKLIEKRLRQLANEVCGLEQLWGAELGSACMIGSVATQHIYGLLFRLLWPLCAARPFVRRQLPFAEDLQRASREYPSFAWVASPALLKRMGDNLDWHSLAAVRRVFSSGGALPADAAQSLQQRLGQWPTEILGSSETGGIAWRQGGQRWQAFDGVELSQDAQGALRISSPYLPPGHVEQTADAALIGADGRFELLGRLDRIVKLEEKRVSLPLIEQALAAHPWVSEARLGLVQANRASLGALLVLSAAGLLALRNQGRRALTEALRQHLQPHCETIALPRRWRLLRQMPLNAQGKLPQADVEALLLAPRSKQPEVLEQQNVEGELHLHLSVPPDLAFFNGHFPKAPILPGVVQVDWAISLGRRLLDLPCGFAGMEVLKFQQLVRPGDRLTLTLRFDAARSKLHFAFRNADNAPCSSGRILLEDDHA
>NZ_AP020337.1|WP_116886856.1|483496_484231_-|glycosyltransferase-family-2-protein
MHKPCVIIPVFDHELAVPNVVKAVRNAGLPCILVDDASSPACEAVLQQLAQGEAIYLLRLPVNQGKGGAVMAGFREAFRLGFSHALQVDADGQHDLSDIPVFLEQSRQHPDALICGYPQFDESVPKGRLYARYLTHVWVWINTLSLHIRDSMCGFRLYPLAPVVALIDRVQIGRRMDFDSEILVRLSWRGQPMRWLPTRVHYPQDGLSHFRLFHDNALISKMHAKLFFSMLVRLPMILWRRWRP
>NZ_AP020337.1|WP_116886857.1|482552_483500_-|glycosyl-transferase
MSIDKSPREHWASHQERGSFMLMKLTAWGMRVLGRRLLSPVLYGIVLYFFVFGRRARHSIWQYQQHLADWSGKPELRPGQRRVFGQFMAFADALLDKLDVWNGRLGIDQIEIVDQALLRQNLRGQRGQMLVGAHLGNLEVCRALAELGEKVTMNVLVHTKHAERFNRLLGEAGATNLRLIQVSELDPAIMLQLSQRLDEGEWLAIAGDRVALHGGRNVRVDFLGQPANFPQGPWLLAGLLKCSVNLFFCLKGAKGYRMILEPFADAIEWRRSDRAQVIEQWATRYAERLGHYCLEAPQQWFNFYPFWKSADESGS
>NZ_AP020337.1|WP_003316680.1|482037_482487_-|acyl-CoA-thioesterase
MRSKGFLHIDTEIVVPFFDVDMMNIVWHGHYVKYLEVARCALLDHIGHNYMQMLESGYGWPVIDLQLRYVRSAVFGQTLNVRASLVEWENRLKINYLITDAHTGERLTRASTVQVAVDSQSREMQLASPQVFIDAVKNALESTIESASP
>NZ_AP020337.1|WP_024640367.1|490072_490468_-|PAAR-domain-containing-protein
MSFIVREGDLTTTGGFVLAASASEVIERRRVARMGDPVWCPACREIGFIAQGNPTYIDELVAVATQGHEVQCGCEPGSNTLTTSQEHVRADMDATIAIPEELANTARQHAGHLARSMKDGSFTPDVLRPLT
>NZ_AP020337.1|WP_116886854.1|490871_492548_+|malonate-decarboxylase-subunit-alpha
MMTTTSPDARWTRRRSEKQRRLQQVRALADGVVLPTDNIVAALEALLVSGDRVVLEGNNQKQADFLSRALAKVDPGKVHDLHMIMPSVGRAEHLDLFEQGIARKLDFSFAGTQSLRISQLLEDGLLEIGAIHTYIELYSRLVVDLIPNVVLAAGFMADRAGNIYTGPSTEDTPALIEPAAFSDGIVIVQVNQLVDDVSELPRVDIPASWVDFVVVADKPFYIEPLFTRDPRHIKPVHVLMAMMAIRGIYEKHNVQSLNHGIGFNTAAIELILPTYGESLGLKGKICRNWTLNPHPTLIPAIESGWVESVHCFGTELGMENYIAARPDVFFTGRDGSLRSNRQLCQLAGQYAVDLFIGATLQVDGDGHSSTVTRGRLAGFGGAPNMGHDPRGRRHATPAWLDMRQQHDDGPAAYLERGKKLVVQMVETFQEGGKPTFVETLDAVEVAKKSGMPLAPIMIYGDDVTHLLTEEGIAYLYKARSLEERQAMIAAVAGVTVIGLRHNPKDTARMRREGLIALPEDLGIRRTDASRELLAAKSIADLVQWSGGLYNPPAKFRSW
>NZ_AP020337.1|WP_103713767.1|492547_493423_+|triphosphoribosyl-dephospho-CoA-synthase
MSALQWSPHPASLAERLADLAVDALIDEADLSPKPALVDRRGSGAHTDLHLGLMHSSALSLWPTFKWMADAATQFGVVGQPLREALGRLGREGEATMLRTTSGVNTHRGAIWALGLLVTAAALDAQECAPEAVCARAAALARIKDRQVLTQNSHGDQVVRRYGVMGAREQAQQGFPAVRLFALPQLQRSRAAGSGEQNARLDALLAIMTTLDDTCVLHRAGIEGLNAMQQGAQRVLDAGGSASLAGRRALNALDQHLLALNASPGGAADLLAACLFIDGLEPALGPVSRSA
>NZ_AP020337.1|WP_003316694.1|493424_493724_+|malonate-decarboxylase-subunit-delta
METLSFEFPAGQPPKGRALVGVVGSGDLEVLLEPGKPGTLSIQVVTSVNGASLRWQHLFERMFDGQTPPALSIDIHDFGATPGVVRLRLEQGFEEIGHD
>NZ_AP020337.1|WP_103713768.1|493716_494568_+|biotin-independent-malonate-decarboxylase-subunit-beta
MTDNARLLNQHSFIELGARQRARALLDAGSFRELLGPFDRVMSPWLAMQGVVPQADDGVVVAKGTVDGRPVVIAAIEGSFQGGSMGEVGGAKMAGALELAAEDNRNGIPTAAIVLLETGGVRLQEANLGLAAIAEIHAAIVDLRQYQPVIGVVAGSVGCFGGMSIAAGLCSYLLVTQEARLGLNGPQVIEQEAGIEEYDSRDRPFIWSLTGGEQRFASALVDGFAADHVADVRQQVSGWLKQGVPDTHRSSQYPLFLQRLASLDTEPQIDPQSVRTLYQGARS
>NZ_AP020337.1|WP_103713769.1|494564_495365_+|biotin-independent-malonate-decarboxylase-subunit-gamma
MSHSQRGLNWFNALSAGAREVTGLPASLKVADGVLGEQPVRFLAVIADIDNRFPRARQGEVGLLEGWGLAKAVDEAIEQDRDRAEKRALIAIVDVPSQAYGRREEALGIHQALAGAVDSYARARLAGHPVIGLLVGKAMSGAFLAHGYQANRLIALRDPGVMVHAMGKASAARVTLRSVEDLEKLAASIPPMAYDIDSYASLGLLWETLTVKQIEQPAADDLVQVRNVLSSAIKDVQARGVDLSSRLGASNRAASVNVRQLLRAQW
>NZ_AP020337.1|WP_024640819.1|495358_495997_+|malonate-decarboxylase-holo-ACP-synthase
MVISNTGAVLPHDLLWGMPLTALPDDAPKWAVEAVLAGQPVVVRRQAMPAGQVAVGLRGRGREQRYAASMPLAEVCRRVMPEQLIDAPTEIHQQWPALQALRQIRPVMEALELDWGVGGSAGFELASGIAALHQDSDLDLILRTPGRLNRRCAAELVEALETSVCRVDVQLQLESGAVALREWARPTGRVLLKTATGARLVADPWHLGQVCA
>NZ_AP020337.1|WP_011266411.1|495993_496929_+|malonate-decarboxylase-subunit-epsilon
MSSLWVFPGQGSQQTGMLHQLPDEAVVRDCLQEAADALGEDVLALDTAGALQATRAVQLCLLIAGVACARVLQARDCVPDYLAGLSIGAYPAAVVSGALAFDDAVRLVALRGELMQSAWPQGYGMTALIGLDQTQVEALIGQVHSAKTPVFLANINADNQMVISGSAEAMHQVGQLAKAAGAAAVKRLAVSVPSHCALLDAPAQQLAEAFSRVALQAPTLRYLSGSTARPVLSAEKLRDDLAFNMCRVIDWRSTVETAWERGVRLHIELPPGSVLTGLARKVFQQGSALAFQAARLDSLVALSREEGRRTP
>NZ_AP020337.1|WP_003402948.1|496998_497415_+|malonate-transporter-subunit-MadL
MIIYGVALLAICTLAGVILGDMLGVLLGVKSNVGGVGIAMILLICARLWMEKHGGMSKDCEMGVGFWGALYIPVVVAMAAQQNVVTALKGGPVAVLAAVGSVVLCACTIALISRTNRGEPLPKEEPLLTPEIAPAGGR
>NZ_AP020337.1|WP_003402947.1|497416_498181_+|malonate-transporter-subunit-MadM
MWDLIEKGLEHNGLITAFAFVGIIMWVSVVLSRRLTFGRVHGSAIAIVIGLILAWVGGTLTGGQKGLADITLFSGIGLMGGAMLRDFAIVATAFEVQATEARKAGLIGVIALLLGTILPFIVGASIAWMFGYRDAISMTTIGAGAVTYIVGPVTGAALGATSDVMALSIATGLIKAILVMVGTPMAARWMGLDNPRSAMVFGGLAGTVSGVTAGLAATDRRLVPYGALTATFHTGLGCLLGPSVLYFIVRAIVG

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Crispr_ID: NZ_AP020337_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP020337_2

628650-628738

Orphan

Consensus_repeat	Method
TTCTGCCCGAAGGGCGTAGGAGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP020337_2

>merge|NZ_AP020337|2|628650-628738|CRISPRCasFinder
TTCTGCCCGAAGGGCGTAGGAGCGACCGGGGCGGCGATCCGCATTGTTCGCGAAAGGGCTTGGCTTCTGCCCGAAGGGCGTAGGAGCGA

>NZ_AP020337|2|2|628650-628738|CRISPRCasFinder
TTCTGCCCGAAGGGCGTAGGAGCGA	CCGGGGCGGCGATCCGCATTGTTCGCGAAAGGGCTTGGC
TTCTGCCCGAAGGGCGTAGGAGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP020337.1\|WP_003346798.1\|622992_623325_-\|multidrug-SMR-transporter	unknown	unknown	gnl\|CDD\|137367
NZ_AP020337.1\|WP_116886839.1\|623394_624675_+\|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
NZ_AP020337.1\|WP_032657139.1\|635816_636794_+\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|379191
NZ_AP020337.1\|WP_003402881.1\|637322_639578_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_AP020337.1\|WP_057458079.1\|628908_630198_+\|putative-hydroxymethylpyrimidine-transporter-CytX	unknown	unknown	gnl\|CDD\|274096
NZ_AP020337.1\|WP_161632433.1\|636832_637312_+\|TIGR02281-family-clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|131334
NZ_AP020337.1\|WP_003431952.1\|633915_635820_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235501
NZ_AP020337.1\|WP_003414437.1\|621768_622944_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223651
NZ_AP020337.1\|WP_003404692.1\|619963_620920_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_116886841.1\|620956_621772_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381321
NZ_AP020337.1\|WP_002551796.1\|631728_632181_+\|DUF1249-domain-containing-protein	unknown	unknown	gnl\|CDD\|225693
NZ_AP020337.1\|WP_080434055.1\|632326_633133_+\|3',5'-cyclic-AMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182997
NZ_AP020337.1\|WP_024651302.1\|615728_616367_-\|toluene-tolerance-protein	unknown	unknown	gnl\|CDD\|270690
NZ_AP020337.1\|WP_058822310.1\|616482_618285_+\|lipid-A-export-permease/ATP-binding-protein-MsbA	unknown	unknown	gnl\|CDD\|131258
NZ_AP020337.1\|WP_024641181.1\|633221_633839_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225692
NZ_AP020337.1\|WP_003404685.1\|618409_619834_+\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	unknown	unknown	gnl\|CDD\|183085
NZ_AP020337.1\|WP_003402864.1\|630166_630913_-\|DUF3298-domain-containing-protein	unknown	unknown	gnl\|CDD\|378702
NZ_AP020337.1\|WP_003402866.1\|631120_631738_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|182682
NZ_AP020337.1\|WP_003402862.1\|626721_628611_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_AP020337.1\|WP_116886838.1\|624855_626295_-\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829

Protein	Function_ID	Function_description	E-value
NZ_AP020337.1\|WP_003346798.1\|622992_623325_-\|multidrug-SMR-transporter	gnl\|CDD\|137367	PRK09541, emrE, EmrE family multidrug efflux SMR transporter.	4.03121e-28
NZ_AP020337.1\|WP_116886839.1\|623394_624675_+\|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0
NZ_AP020337.1\|WP_003402881.1\|637322_639578_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_AP020337.1\|WP_057458079.1\|628908_630198_+\|putative-hydroxymethylpyrimidine-transporter-CytX	gnl\|CDD\|274096	TIGR02358, purine-cytosine_transport_protein, putative hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate. [Transport and binding proteins, Nucleosides, purines and pyrimidines, Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	5.80369e-107
NZ_AP020337.1\|WP_161632433.1\|636832_637312_+\|TIGR02281-family-clan-AA-aspartic-protease	gnl\|CDD\|131334	TIGR02281, Uncharacterized_protein_RP867, clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria). [Protein fate, Degradation of proteins, peptides, and glycopeptides].	4.41127e-49
NZ_AP020337.1\|WP_003431952.1\|633915_635820_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NZ_AP020337.1\|WP_003414437.1\|621768_622944_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	3.28664e-56
NZ_AP020337.1\|WP_002551796.1\|631728_632181_+\|DUF1249-domain-containing-protein	gnl\|CDD\|225693	COG3151, COG3151, Uncharacterized protein conserved in bacteria [Function unknown].	1.97309e-55
NZ_AP020337.1\|WP_003402864.1\|630166_630913_-\|DUF3298-domain-containing-protein	gnl\|CDD\|378702	pfam11738, DUF3298, Protein of unknown function (DUF3298). This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.	2.63538e-06
NZ_AP020337.1\|WP_032657139.1\|635816_636794_+\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	9.71175e-09
NZ_AP020337.1\|WP_080434055.1\|632326_633133_+\|3',5'-cyclic-AMP-phosphodiesterase	gnl\|CDD\|182997	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional.	3.0932e-97
NZ_AP020337.1\|WP_024651302.1\|615728_616367_-\|toluene-tolerance-protein	gnl\|CDD\|270690	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase and Choline Kinase family. This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	1.53969e-05
NZ_AP020337.1\|WP_058822310.1\|616482_618285_+\|lipid-A-export-permease/ATP-binding-protein-MsbA	gnl\|CDD\|131258	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA., lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	0
NZ_AP020337.1\|WP_024641181.1\|633221_633839_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|225692	COG3150, COG3150, Predicted esterase [General function prediction only].	4.15346e-71
NZ_AP020337.1\|WP_003404685.1\|618409_619834_+\|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE	gnl\|CDD\|183085	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE.	0
NZ_AP020337.1\|WP_116886841.1\|620956_621772_-\|aldo/keto-reductase	gnl\|CDD\|381321	cd19095, AKR_PA4992-like, Pseudomona aeruginosa PA4992 and similar proteins. Pseudomona aeruginosa PA4992 is the prototype of this family. It is a putative aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NAD(P)H as a hydride donor.	6.37729e-80
NZ_AP020337.1\|WP_003402866.1\|631120_631738_+\|NUDIX-domain-containing-protein	gnl\|CDD\|182682	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional.	5.32812e-71
NZ_AP020337.1\|WP_003402862.1\|626721_628611_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_AP020337.1\|WP_116886838.1\|624855_626295_-\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	6.90733e-113

>NZ_AP020337.1|WP_003402862.1|626721_628611_+|phosphomethylpyrimidine-synthase-ThiC
MSIKAKNAAHLSESAQVDSGSVQPFTRSQKIYVQGSRPDIRVPMREITLDVTPTDFGGEINAPVTVYDTSGPYTDPNVIIDVRKGLADVRSPWIDSRNDTERLPGLSSNFGQQRLSDAELTALRFAHVRNPRRAKAGANVSQMHYARQGIITAEMEYVAIRENMKLQEARAAGLLTQQHAGHSFGASIPKEITAEFVREEIARGRAIIPANINHVELEPMIIGRNFLVKINGNIGNSALGSSIEEEVAKLTWGIRWGSDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVGGAAEDLTWELFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEDICEIMKAYDVSFSLGDGLRPGSIADANDAAQFGELETLGELTKIAWKHDVQTMIEGPGHVPMQLIKENMDKQLECCDEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKDDVKTGIITYKIAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLGLDPDTARSYHDETLPKDSAKVAHFCSMCGPKFCSMKITQEVREYAANQRIDAVDVDVAKGLAEQAERFKQEGSQLYKKV
>NZ_AP020337.1|WP_116886838.1|624855_626295_-|TolC-family-outer-membrane-protein
MLRKLSLVVAVSFASSGLTWAAELPMPTQTGLLSVYQQAVDNNADLAASRADYDARKEAVPQARAGLLPNISGSAQNSSTRTSIDQPRAVASRSGNLYQATLSQPIFRADRWFQLQAAEASNEQAALELSATEQNLILQSAQSYFSVLRAQDNLASTKAEEAAFKRQLDQANERFDVGLSDKTDVLQAQASYDTSRASRLLAQRQVEDAFQALVTLTNREYNSIEGIVHTLPVLAPTPNDAKAWVDTAAQQNLNLLASNYAVNAAEETLRQRKAGHAPTLDAVATYQRGDNDALGFSNPNYTGRNYGGDVEQRSIGVQLNIPIYSGGLTSSQVREAYARLSQSEQRRESLRRQVVENTRNLHRAVNTDVEQVQARKQSVISNQSALEATEIGYQVGTRNIVDVLDAQRQLYASVRDYNNTRYDYILDNLRLKQAAGTLNPGDLQDLSRYLKADYNPDKDFLPPDLATAAQKNFERPAKR
>NZ_AP020337.1|WP_116886839.1|623394_624675_+|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase
MNRTLYTVLFHLGLPLVALRLWLRARKAPAYRQRIGERFARGLPVMQRGGIWVHAVSVGESIAAAPMIRSLLVQYPQLPITVTCMTPTGSERIKALFASEPRIQHCYLPYDLPWAAARFLDQVQPRLGIIMETELWPNHIHQCSLRGIPVVLANARLSERSARGYARFACLTRPMLAEMAWFAVQTEAEAQRFRDLGARPECVAVTGSIKFDLSIDPQLLQRAAQQREQWQTTQRPVWIAASTHAGEDESVLAAHRTLLTSHPDALLILVPRHPERFDSVHTLCQQQGFATVRRSTAQAVTADVSVLVGDTMGELLFLYALADIAFVGGSLVPNGGHNLLEPAALAMPVLSGPHLFNFLEIAALLRKAGALQEVNDAAALATAVQGLFDQPQQARNMADAGLAVMKANQGALQRLLDGIGRLMGKR
>NZ_AP020337.1|WP_003346798.1|622992_623325_-|multidrug-SMR-transporter
MNAYYLLAIAVCAEVIATTSMKAVKGFSTPLPLVLLITGYAIAFWMLILVMRTIPVGITYAIWSGMGIVMVSIAAFFIYGQKLDLPALLGMGMIVAGVAVIQLFSKTAGH
>NZ_AP020337.1|WP_003414437.1|621768_622944_-|FAD-dependent-oxidoreductase
MPSVISTDVLIVGAGVAGLWLNARLRRQGFSTVLVESASLGGGQSLKSQGIIHGGAKYALHGALSGASEAIADMPRRWREALDGKGELDLSGVRLLSEAHYLWSPGTIAGNLTSFFASKAVRGRVDQVKGEQLPPALQNPKFKGKVYRLAELVVDVPSLIGRLAELAGDSLLAGQHIEPLFEGDELIGLRVDGRDIHAQRIVLSAGGGNADLLNALGVSQPQMQRRPLHMVLVKGPTLKPLYAHCLGGGPKPRITVTTHPAADGQWVWYLGGDLAEADGVARQPDAQIAVARKELEALLPWVDLSQAQWATLRVDRAEPAQSGLVRPDNAFLDSQQRLMIGWPTKLALAPDFADRVLSQLSRDGIHPTPQAALSDVPRPPMAIPVWDELLP
>NZ_AP020337.1|WP_116886841.1|620956_621772_-|aldo/keto-reductase
MSLKTLHDLHRPLGSTGLNVSPLGLGTVKLGRDQGVKYPSGFKIPDDQQAQMLLRMARDMGINLIDTAPAYGTSEERLGPLLRGQRQDWVIVSKVGEEFVNGQSSHDFSAAHTRTSVERSLKRLETDFLDLVLVHSDGNDLAILNDAEVYQTLADLKREGKIRGFGFSGKTVEGGLLALREGDCAMVTYNLNEQDEKPVLDYAQAHGKGILVKKALASGHVCLTPGTDPVHASFQLLFEHPAVASAIVGTINPLHLAHNVATAAAVICRQA
>NZ_AP020337.1|WP_003404692.1|619963_620920_-|hypothetical-protein
MPRTLIRKNPSNFKTLPLFVEATPESLSYQSVGMPMNFAQTLQRRRKIDVPDTERFATELANLGVSVRLTVSWQNRDYWVLVRQRRQDRGDVVLKLISGYVPAHELTLPLHTAIQEVAEECLIETPQGWLSGLFKETWLPAPYAAALHYREAMPFRLSPLSGAARPVRTGSLTLLERPRAYVHLPTASLQLIYDMRLEIPKEARPVSLFHVDEALENDQLVARLNRSKPDLYLMPLENGAPLPELYTLKRDKLIPAGTRGLYLAESFAAQDGWVVREERIRWKDWLRQQGMAPPAKKSGLKRLTGKARELLHSISGKL
>NZ_AP020337.1|WP_003404685.1|618409_619834_+|bifunctional-D-glycero-beta-D-manno-heptose-7-phosphate-kinase/D-glycero-beta-D-manno-heptose-1-phosphate-adenylyltransferase-HldE
MKLSMPRFDQAPVLVVGDVMLDRYWHGGTSRISPEAPVPVVKVDQIEDRPGGAANVALNIAALGAPASLVGVTGDDEAAESLTNSLKAAGVLARFQRIADQPTIVKLRVMSRHQQLLRIDFEEPFRTDPLALSAEVYSLLDGIKVLVLSDYGKGALKNHQALIQAARKRGIPVLADPKGKDFAIYRGASLITPNLSEFEAIVGHCVDEAQLVTKGAQLMQELDLGALLVTRGEHGMTLLRPDQQALHLPARAREVFDVTGAGDTVISTLAAAIAAGEELPHAVALANLAAGIVVGKLGTAAISAPELRRAIQREEGSERGVLGLEQLLLAVDDARAHKERIVFTNGCFDILHAGHVTYLEQARALGDRLIVAVNDDASVSRLKGPGRPINSVERRMAVLAGLGAVDWVISFPEGTPENLLTHVKPDVLVKGGDYGVDQVVGADIVQAYGGEVRVLGLVENSSTTAIVEKIRGQG
>NZ_AP020337.1|WP_058822310.1|616482_618285_+|lipid-A-export-permease/ATP-binding-protein-MsbA
MTTSESSATSSVKIYFRLLSYVRPYVGIFLLSIIGFVIFASTQPMLAGILKYFVDGLTNPEAVLFPNVPYLRELQLLQAVPLLIVLIAAWQGLGSFLGNYFLAKVSLGLVHDLRVELFNKLLVLPNRYFDTTNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFIYLLMMNWKLTLVMLAILPLIAVMVGTASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQARFAQASNSNTQKQLRMTKTGAIYTPMLQLVIYSAMAVLMFLVLFLRGEATAGDLVAYITAAGLLPKPIRQLSEVSSTIQKGVAGAESIFEQLDVEEEVDTGTIERERVTGHLEVKNLSFFYPQTARQVLNDISFSAAPGQMIALVGRSGSGKSTLANLIPRFYGHDIGNILLDGVEINDYRLRNLRRHIAQVNQNVTLFNDTIANNIAYGDLAGAPRADIEAAAADAYAKEFIDQLPQGFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADLILVMDAGQIVERGTHTELLAQNGYYARLHAMGLDEPAPAGAV
>NZ_AP020337.1|WP_024651302.1|615728_616367_-|toluene-tolerance-protein
MQALDHAHYLERVQGAEVLEADGTGDKVLRLRDGSMLKLFRRKRLVSSAAWYPYAQRFADNCETLARRGIPCPRVRTVCRIAEIERDAVHYDPLAGFTLRQLLGSAVADDKLRMQLGSFIAGLHEKGIYFRSAHLGNVILTPEGSLGLIDIADMKTYRRALRKSLRLRNFKHMLRYQEDRQWLLDNGNPAFLDGYMSAQTLCDTSELAQAVQ
>NZ_AP020337.1|WP_057458079.1|628908_630198_+|putative-hydroxymethylpyrimidine-transporter-CytX
MNTPGTYSPDTPVPASQRVFGGRDLFSLWFSLGIGLMVLQTGALLAPGLGMSGSMLAIFLGTLAGVLLLASVGVIGSDTGLSSMAALKLSLGSKGASLPAVLNLLQLIGWGAFEIIVMRDAASLLGARAFAEGSLWSSPLLWTLLFGALATLLAVSGPLTFVRRFLRKWGLWILLTACAWLTWNLLAKADLPALWATSGDGSLPFASGFDIAIAMPLSWLPLIADYSRFGQRAKSVFAGTATGFFIGNFWLMSLGVAYTLAFAPSGEVNALLLALAGAGLGIPLLLILLDETENAFADIHSAAVSSALLSRIKVEYLALVIGVICTLIACLAPLAQYQNFLLLIGSVFAPLFGVVLVDHFILRGRSGQAAEGGLRWMSLLAWLGGLSTYHLLANLYPEVGATLPALIVAGVLQLLIGGAINRGRGTVPA
>NZ_AP020337.1|WP_003402864.1|630166_630913_-|DUF3298-domain-containing-protein
MSLLRITSLACLALLLGACQSLFTPNMRTPLQVQRDASELIKPGCTTADCPLVNIDTVHFPDEPRLDAIVQKTLLQLTVADSSASPPASIKAYQEQFLSQAQGRNASYLQAKVREQHDGIVVVELSSYLETGGAHGNPGRAFINYSRQQQKVLTLADMIIPGKESEFWQKAQLAHQGWLVSTKMNEDSEFMKTWPFKRTPHIALTYGAVILKYSVDTIAPYSMGHIELKIPYPQLNGILKPELFPGRG
>NZ_AP020337.1|WP_003402866.1|631120_631738_+|NUDIX-domain-containing-protein
MTQTTRSAPSAFETIKRENCFKGFYKLDKLHVRHELFAGGMSKEISRELFVRHDAVCVLPYDAKRDEVVLIEQFRVGAMKKTNNPWLVELVAGLIDKDEQPEEVAHREAEEEAGLKFEALWPITKYFPSPGGSDEFVHLFLGRCSSEGAGGLHGLEAEGEDIRVTVWSFDDALQAMKDGTIKNASTIIALQWLALNRAEIRGLWS
>NZ_AP020337.1|WP_002551796.1|631728_632181_+|DUF1249-domain-containing-protein
MVVNLLRERYRVDLAGLQAACEANYARLMRLLPDMRNEQRSRRVAVTQGDQMLGVLAVEVLLDCPYTTTLQVRQEHSLPWLPVPVLEVQVYHDARMAEVIGAEHARRFRGIYPYPNADMHQPDEKAQLNLFLGEWLSHCLACGHEFEAVR
>NZ_AP020337.1|WP_080434055.1|632326_633133_+|3',5'-cyclic-AMP-phosphodiesterase
MPSAALSSSVLLVQLSDSHLFAEADGALLGMSTRDSLEKVVDQVLAEQPHIDLVVASGDISQDGSVESYQAFRRISGRIDAPARWFAGNHDELPQMEQVAQHNGLLDPVVDIGQWRVTLLDSAVPGSVPGFLADTQLQLLEQSLSEAPDRHHLICLHHHPVAIGCEWMAPIGLRNADALFAVLDRFAQVRAILWGHVHQEFDQMRNGVRLLASPSTCIQFAPGSVDFKVDTTAPGYRWLRLHDDGRLETAVSRVVGLEFEVDYGGTGY
>NZ_AP020337.1|WP_024641181.1|633221_633839_+|alpha/beta-fold-hydrolase
MTSDTPSLLYIHGLNSSALSRKACQLSALMKSLGLADRLQVPELHHHPRQAMLQLEAAITALGRPLLVGSSLGGYYATHLAQRHGLKAVLINPAVNPHQLFDGFLGVQQNLYTGEQWQLTEDHIRALAELEVPAPQDPQQFQVWLQTGDETLDYRRAEKFYRNCALRIQAGGDHSFQGFAEHMPALLTVAGFAPDLLQKIDLSAL
>NZ_AP020337.1|WP_003431952.1|633915_635820_+|DNA-topoisomerase-IV-subunit-B
MANPSASSYNADAIEVLSGLDPVRKRPGMYTDTSRPNHLAQEVIDNSVDEALAGHARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDPKYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYEDGLRSYLQDSVTEFLRLPDEPFCGSFTGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLKASKKVERKRITQGPALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDPGAADISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVLT
>NZ_AP020337.1|WP_032657139.1|635816_636794_+|esterase-like-activity-of-phytase-family-protein
MIRAWLAALILIAAPVVAAPLEALKLQSEHPVDDMAGGNLSGLAMCNGQLWTVSDRDDDVLYSLDVSQDTWKAQSHHIDAPAPQSYLPLKLRFMAGLSALIRGGSLDFEGVSCDAAGNRYLVSEAYGTVLKVPVSGKPFWLDLPKELVDQARAQGMLQRFNAIFEGIAVSPAGDRLWLAAEREKRGLLVVQRDKEQWTCGQSCVLLSESGLDALPPEQGSKKVSTDFSDVSLYNGKLFTLERAVYRICRRDLETGQIERCWSFAKEAMVPSRRYDQPYGLTEALVVDEKGAWIGIDNNFGVRADGEKRPIVWRFAAPEAGWSAGQ
>NZ_AP020337.1|WP_161632433.1|636832_637312_+|TIGR02281-family-clan-AA-aspartic-protease
MIMAWAAGLFLATRFFGDWEDRQQNPNAVVTSQHGDGYIEVQLAGNRQGHFVTTGQINGRTVEFMIDTGATDVAVPGDMADRLGLKRGFPVTVSTANGNSQGFRTTLDRLQLGDIVLTNVRALVAPGLDGEQVLLGMSAMKQLEFTQRGGNLLLRQSTK
>NZ_AP020337.1|WP_003402881.1|637322_639578_+|DNA-topoisomerase-IV-subunit-A
MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMRAVYRIEDGDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALLVENS

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Crispr_ID: NZ_AP020337_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP020337_3

1743009-1743145

Orphan

Consensus_repeat	Method
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP020337_3

>merge|NZ_AP020337|3|1743009-1743145|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGCGTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACGCCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

>NZ_AP020337|3|3|1743009-1743145|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	GTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACG
CCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP020337.1\|WP_011267127.1\|1741283_1742573_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NZ_AP020337.1\|WP_152091931.1\|1730873_1731863_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226361
NZ_AP020337.1\|WP_011267130.1\|1748471_1749329_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NZ_AP020337.1\|WP_152091935.1\|1749328_1750126_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_AP020337.1\|WP_004408565.1\|1731864_1732662_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_AP020337.1\|WP_011267128.1\|1743175_1743811_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_AP020337.1\|WP_004408362.1\|1747025_1748210_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132848
NZ_AP020337.1\|WP_003368369.1\|1745199_1745940_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|234730
NZ_AP020337.1\|WP_003317453.1\|1743901_1744156_-\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|234718
NZ_AP020337.1\|WP_152091932.1\|1736973_1741032_+\|Ice-nucleation-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_024643193.1\|1729146_1730109_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_AP020337.1\|WP_152091933.1\|1746060_1746993_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|235543
NZ_AP020337.1\|WP_004408569.1\|1734372_1735440_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270267
NZ_AP020337.1\|WP_011267123.1\|1733487_1734294_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224441
NZ_AP020337.1\|WP_004408355.1\|1750115_1750634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_152091934.1\|1748251_1748488_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|225057
NZ_AP020337.1\|WP_003317454.1\|1744155_1744968_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_AP020337.1\|WP_024643192.1\|1730128_1730782_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_AP020337.1\|WP_162886048.1\|1735794_1736514_+\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|132380
NZ_AP020337.1\|WP_003421288.1\|1732648_1733491_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226616

Protein	Function_ID	Function_description	E-value
NZ_AP020337.1\|WP_011267127.1\|1741283_1742573_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_AP020337.1\|WP_152091931.1\|1730873_1731863_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.54063e-145
NZ_AP020337.1\|WP_011267130.1\|1748471_1749329_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	6.59427e-20
NZ_AP020337.1\|WP_152091935.1\|1749328_1750126_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	7.89666e-38
NZ_AP020337.1\|WP_004408565.1\|1731864_1732662_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	3.2364e-59
NZ_AP020337.1\|WP_011267128.1\|1743175_1743811_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.57106e-78
NZ_AP020337.1\|WP_004408362.1\|1747025_1748210_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	2.50264e-39
NZ_AP020337.1\|WP_003368369.1\|1745199_1745940_-\|septum-site-determining-protein-MinC	gnl\|CDD\|234730	PRK00339, minC, septum site-determining protein MinC.	8.00188e-159
NZ_AP020337.1\|WP_003317453.1\|1743901_1744156_-\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|234718	PRK00296, minE, cell division topological specificity factor MinE; Reviewed.	1.35704e-46
NZ_AP020337.1\|WP_152091934.1\|1748251_1748488_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|225057	COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only].	1.20981e-09
NZ_AP020337.1\|WP_024643193.1\|1729146_1730109_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	8.68834e-151
NZ_AP020337.1\|WP_152091933.1\|1746060_1746993_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|235543	PRK05646, PRK05646, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0
NZ_AP020337.1\|WP_004408569.1\|1734372_1735440_-\|extracellular-solute-binding-protein	gnl\|CDD\|270267	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.29243e-58
NZ_AP020337.1\|WP_011267123.1\|1733487_1734294_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|224441	COG1524, COG1524, Uncharacterized proteins of the AP superfamily [General function prediction only].	3.57848e-39
NZ_AP020337.1\|WP_003317454.1\|1744155_1744968_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.8418e-167
NZ_AP020337.1\|WP_024643192.1\|1730128_1730782_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.91941e-57
NZ_AP020337.1\|WP_162886048.1\|1735794_1736514_+\|UTRA-domain-containing-protein	gnl\|CDD\|132380	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. [Regulatory functions, DNA interactions].	5.00695e-82
NZ_AP020337.1\|WP_003421288.1\|1732648_1733491_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226616	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.03847e-111

>NZ_AP020337.1|WP_011267127.1|1741283_1742573_-|M18-family-aminopeptidase
MRAELNKGLIDFLKASPTPFHATATLVQHFEAAGFQRLDERDTWAVETGGRYFVTRNDSSIVAFRMGRQSPLSGGIRMVGAHTDSPCLRVKPQPELQRQGFWQLGVEVYGGALLAPWFDRDLSLAGRVTFRRDGKVESQLIDFKLPIAVIPNLAIHLNRTANEGWAINAQNELPPILAQVAGDERADFRALLTDQLAREHGLNADVVLDYELSFYDTQGAAVVGLNGDFLAGARLDNLLSCFAGMQALLNTESDETALLVCTDHEEVGSSSACGADGAMLEQIVQRLLPSSEDYVRTIQKSLLISADNAHGIHPNYADKHDANHGPKLNAGPVIKVNSNQRYATNSETAGFFRHLCMAEEVPVQSFVVRSDMGCGSTIGPITASHLGIRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLSAFYASHELP
>NZ_AP020337.1|WP_152091932.1|1736973_1741032_+|Ice-nucleation-protein
MNLDKALVLRTCANNMADHCGLIWPASGTVESKYWQSTRRHENGLVGLLWGAGTSAFLSVHADARWIVCEVAVADIISLDEPGMVKFPRAEVVHVGDRISASHFISARQADPASTPPPTSMTTATLPPPPTPAAAHVTLPVAASVTLPVAEQASHEVFDVALVIAAAPSVNTLPVTTPQNLQTATYGSTLSGDNHSRLIAGYGSNETAGNHSDLIAGYGSTGTAGSDSSLVAGYGSTQTAGGDSALTAGYGSTQTAREGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAREGSTLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAQQGSVLTSGYGSTQTAGAASNLTTGYGSTGTAGHESFIIAGYGSTQTAGHKSILTAGYGSTQTARDGSDLIAGYGSTGTSGSSSSLIAGYGSTQTASYKSMLTAGYGSTQTAREHSDLVAGYGSTSTAGSNSSLIAGYGSTQTAGFKSILTAGYGSTQTAQERSDLVAGYGSTSTAGYSSSLIAGYGSTQTAGYGSTLTTGYGSTQTAQENSSLTTGYGSTSTAGYSSSLIAGYGSTQTAGYESTLTAGYGSTQTAQERSDLVTGYGSTSTAGYASSLIAGYGSTQTAGYESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLIAGYGSTQTAGYKSTLTAGYGSTQTAEYGSSLTAGYGSTATAGQDSSLIAGYGSSLTSGIRSFLTAGYGSTLIAGLRSVLIAGYGSSLTSGIRSTLTAGYGSNQIASYGSSLIAGHESIQVAGNKSMLIAGKGSSQTAGFRSTLIAGAGSVQLAGDRSRLIAGADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQSRLTAGKNSILTAGARSKLIGSEGSTLSAGEDSTLIFRLWDGKRYRQLVAKTGENGVEADIPYYVNEDDDIVDKPDEEDDWIEVE
>NZ_AP020337.1|WP_162886048.1|1735794_1736514_+|UTRA-domain-containing-protein
MREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRITLREALLQLESQGLIYREERRGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARLQPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYLRPELFPGILEHDLNESLTALYARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWRHDAIYVRAEVHGD
>NZ_AP020337.1|WP_004408569.1|1734372_1735440_-|extracellular-solute-binding-protein
MKHLLLASLLGSAMAMSSLVMAADTDLKTLEAAAKAEGAVNSLGMPDDWANWGGIWKDLEAKYGLKHMDTDMSSAQEIAKFEAEKDNASGDIGDVGAAFGPIAAAKGVTQPYKPTTWEQIPTWAKDTDGHWALAYTGTIAFIVNKNLLHGSEIPKSWADLKTGKYKVSIGDVSTAAQAANGVLAAAIAMKGDESNIAPGLALFTDLAKQKRLSLANPTIQTIEKGEIEVGVVWDFNGLSYKAKMTKPDDYVVLIPSDGSVISGYTTIINKYAKHPNAAKLAREYTFSDAGQIRLAEGNARPIRVEHIKLPEDVQAKLLPQDQYKNAKPIKNADAWEKTSKALPQMWNEQVIIEMN
>NZ_AP020337.1|WP_011267123.1|1733487_1734294_-|alkaline-phosphatase-family-protein
MKHNVILIVLDGLNYEVARHAMGHLQAWHDAGRAALYKIECELPALSRPLYECILTGVAPIDSGIVHNNVSRLSNQRSIFHYARDAGLSTAAAAYHWVSELYNRTPFDPARDRHTEAADLPIQHGLFYWADHYPDSHLFADAESLRLSHAPNFLLIHPMNIDDAGHKHGLDTAQYRNSARSADIILADYLQRWLDAGYQVLVTADHGMNNDRSHNGLLPEEREVPLFVIGDAFSLNVDAAPRQTDLCGTVCELLGIPHDKPVCREIFN
>NZ_AP020337.1|WP_003421288.1|1732648_1733491_-|ABC-transporter-permease-subunit
MTTFSRGKWLGLLCLLPFAVFFIVFQIAPLLWVAIHSLQSDAGWGWENFTRAFSSKFYRQAIQYSLEISFWSSLFGIIISVLGAYSLRKVDSRLRDFVNSFANMTSNFAGVPLAFAFIILLGFNGALTLILKQTGIIDDFNLYSKTGLIILYTYFQIPLGVLLLYPAFDAVREDWNESAALLGASSYQFWRYIGLPVLTPALLGTFVILLANALGAYATVYALTTGNFNVLPIRIAAMVAGDITLDPNMASALAMILVGLMTLVTVVHQWLLRRSYHVTR
>NZ_AP020337.1|WP_004408565.1|1731864_1732662_-|ABC-transporter-permease
MSRVERGPASIYHKTVVCLLFLILLLPLAGTFLYSIATSWSATILPSGLTFKWYVALWSDPRFLTAFGQSLLVCVGALILSVVLILPLLFVVHYYFPRLDGLMNILILLPFAVPPVVSSVGLLQLYGSGPMAMVGTPWILIGCYFTVALPFMYRAITNNLQAINLTDLMDAARLLGASTWQAAFMVVLPNLRKGLMIALLLSFSFLFGEFVFANLLVGTRYETLQVYLNNMRNSSGHFNSALVISYFLFVLVLTWAANRLNKDKD
>NZ_AP020337.1|WP_152091931.1|1730873_1731863_-|ATP-binding-cassette-domain-containing-protein
MSFVSIENLQKSYASTSVFSDINCSIAKGEFVTLLGPSGCGKSTLLRCIAGLTPVNSGRILLDGSDLVPLTPQKRNIGMVFQSYALFPNMTVEQNVAFGLRIQKVSADESTRRVAEILRMVELHDFATRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKNLREQIRAIQRELGLTTIFVTHDQEEALIMSDRIFLMNQGRIVQSGDAETLYTAPVDVFAAGFIGNYNLLEADDATRLMQRPINSRVAIRPESIQLSLTGELEGEIRSHSLLGNVIRYRVQARGVKLVVDVLNRSADDLHPDGRRVTLNIEPSALCALD
>NZ_AP020337.1|WP_024643192.1|1730128_1730782_-|HAD-IB-family-hydrolase
MPLAIFDLDETLIGGDCATLWSEQMGRLGWVDSTSFMQRNDELMAAYSEGKLAMEDYMAFSLEPMAGRTPEEIEHLVGPWVEDVIEPIIYSDACTCIAKHRAKGDRILVISASGVHLVKPIAERLGIDEVLGIELDVQHGVYSGATVGVLTYREGKITRLMEWLDAEGENLEGASFYSDSRNDLPLLLKVDHPNVVNPDAVLLEHAQKAGWPVHDWS
>NZ_AP020337.1|WP_024643193.1|1729146_1730109_+|NAD(P)H-quinone-oxidoreductase
MKALQGVEGHVEWVEEPSPALDVGQVRIKVAAAGLNRADLLQREGKYPPPPGVTQTLGLECSGVIAEVGPGSSWVVGDRVCALLAGGAMAEEVVVDGRHVLPVPEGLSLHEAAAIPEVYATAWLNLFELAGLKPGEKVLLHAGASGVGSAGIQLCKAFGNPVWVSVGSAERLAYCVELGAQGGVVRSESLEGLNDFAPFNVILDPVGASYAELNVKLLALDGRWVLIGVMSGREAKVDLAHVLGKRIRLMGSTLRSRDDTFKADLLSDLGQHVWPLFTEGRLKPQLAKSFAIKDAEAAFEELATNTVSGKIVLVIDESLV
>NZ_AP020337.1|WP_011267128.1|1743175_1743811_-|RluA-family-pseudouridine-synthase
MPLSNIRIIHQDAAVLVIDKPTLLLSVPGRADDNKDCLITRLQENGYPEARIVHRLDWETSGIILLARDADTHRELSRQFHDRETEKAYTALCWGQPSLDSGSIDLPLRYDPPTKPRHVVDHEGGKHALTFWKVVERHDTYCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYAHPEALAAYPRLCLHASMLSFTHPGTGERMTFECAAPF
>NZ_AP020337.1|WP_003317453.1|1743901_1744156_-|cell-division-topological-specificity-factor-MinE
MNIFDFFRDRKKGSTASVAKERLQIIVAHERGQRSTPDYLPALQKELVEVIRKYVNIESDQVQVALESQGSCSILELNITLPDR
>NZ_AP020337.1|WP_003317454.1|1744155_1744968_-|septum-site-determining-protein-MinD
MAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDFVNVVNGEANLQQALIKDKKIEGLFVLAASQTRDKEALTKEGVEKVLMELKESFEYIVCDSPAGIETGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSRRAERGEDPIKEHLLLTRYNPERVSKGEMLGVEDVKEILAVTLLGVIPESQAVLKASNQGVPVILDDQSDAGQAYSDAVDRLLGKTLEHRFLDVHKKGFFERLFGGN
>NZ_AP020337.1|WP_003368369.1|1745199_1745940_-|septum-site-determining-protein-MinC
MSQIESQNPEPVFQLKGSMLAITVMELARTNLEALDRQLAAKVAQAPNFFSNTPLILALDKLAPNEGPVDLPGLVRICRQHGLRTLAIRANRIEDIAAAIAVDLPVLPPSGARERVIDPVEAEAPKKIPEKPPEPLIKPTRVITAPVRGGQQIYAQGGDLVVVAPVSPGAELLADGNIHVYGPMRGRALAGIKGDTKARIFCQQLSAELISIAGQYKVSEDLRRDPLWGSPVQISLSGDVLNIIRL
>NZ_AP020337.1|WP_152091933.1|1746060_1746993_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MDRPRLKASFLHPRFWPLWLGLGLLWLIVQLPFCVLLVIGRALGAIMYRVATDRKKIASRNLELCFPHLSAAERKRLLKENFASTGIAFFEMAMSWWWSKKRLARLAHVEGLEHLQNAQKKGEGVILMALHFTTLEIGAALLGQQHTIDGMYREHKSPLFDFVQRRGRERHNLDSLAVERDDVRGMLKLLRAGRAIWYAPDQDYGAKQSIFVPLFGIQAATVTATSKFARLGRAQVVPFTQRRLADGSGYRLVIHPPLDNFPGESDEADCLRINQWVEKAVTECPEQYLWAHRRFKSRPPGEPKLYNKHK
>NZ_AP020337.1|WP_004408362.1|1747025_1748210_+|patatin-like-phospholipase-family-protein
MPDPAVAINAVRSPVEPVTGLILSGGGARAAYQVGVLAGIADLLPAGAPNPFPVIVGTSAGAINAVKLASGALHFRIAIHQLTEFWQSFRSHQVLRSDWSGVIHQASRFFGRSLMGFGRNIPVALLNSSPLRELLNERLDLSGIEAAINAHHLRAVAVTAFGYESGQAVTFYQGRGTIEPWLRHRRIGRPTQLTVDHLLASSAIPLLFAPVMLDKEYFGDGAVRQSAPISPALHLGANRVLVVGVSGNPRGLKSERPAPRPPNGMQPSLAQISGHMLNSTFIDNLESDIELLERLNTASALLPDEQIRQPGMEPVEVLVISPSRPLDEIAARHRRELPPALRTFLRGPGATRSSGASVLSYLLFESGYCSELIELGRHDAIAQGAELKRFLRLT
>NZ_AP020337.1|WP_152091934.1|1748251_1748488_-|Rieske-2Fe-2S-domain-containing-protein
MNEPAEFRRPDTFTVRIGQEQYLIPSSCPHREGWLEHGVVNEKRRSITCPLHFSVFSLETGEQLSGPPCGQLQVRRVR
>NZ_AP020337.1|WP_011267130.1|1748471_1749329_-|iron-containing-redox-enzyme-family-protein
MEDLHKQLFLANRALIEKRVPMPQAILAFEQHWIEDAIERSMTADAPDDLAGLRRMLAELVEQESSEVPPSAQYVANDMTLDEFRILVQEFALDGLTEAQVFYHLMPRLSLPAQMPMLRMMIDEFGSGNLKRSHTTLYQDLLRELEMPLDLQFYVDANSSAGFTFPNMFCWLAMRADDASWFAGVITYFETVVPFFFECYTQLCERLQIKAHTYYSEHVHIDVFHAIEGQRLLKAMDVSGDLDPVKAWRGICMGREITNLAFDLAVEKARRLKHFNKEVSLERAC
>NZ_AP020337.1|WP_152091935.1|1749328_1750126_-|dihydrodipicolinate-synthase-family-protein
MSGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQMLTLTLRHAGERSVIAGIERHSTQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQTIHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLKDSPSLSRPQDQVDAIRQEGVDYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQQVATLNQRYLLNAPDWYAHIKRELRARGVINSERVVTEEAA
>NZ_AP020337.1|WP_004408355.1|1750115_1750634_-|hypothetical-protein
MSDFDLPMIDATVFMGMHHADPGVRDKSLEFFSRFYESSVQMNFAQIGICDAIIWKKGRALQDAYYPFMDVLHTDMAIQREGYSEQVLQRAAGETLFRGLPADKKLLAAQVLEQEIPFYTHDPELLRLQVLQPFLQPFESTIRRQTFPKMLQRLYDQSCAMVISNEDFQHVW

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Crispr_ID: NZ_AP020337_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP020337_4

4315057-4315158

Orphan

Consensus_repeat	Method
ACGCGGAGCGATGGGCACGATAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP020337_4

>merge|NZ_AP020337|4|4315057-4315158|CRISPRCasFinder
ACGCGGAGCGATGGGCACGATAGAGGTGGGCTGGGGCTTGCGTGAACACCATCAAGCCCCCGCAGCACGGCACCAGGACGCGGAGCGATGGGCACGATAAGT

>NZ_AP020337|4|4|4315057-4315158|CRISPRCasFinder
ACGCGGAGCGATGGGCACGATAGAG	GTGGGCTGGGGCTTGCGTGAACACCATCAAGCCCCCGCAGCACGGCACCAGG
ACGCGGAGCGATGGGCACGATAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP020337.1\|WP_152092188.1\|4325266_4327264_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	unknown	unknown	gnl\|CDD\|234978
NZ_AP020337.1\|WP_024639720.1\|4323169_4323583_+\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NZ_AP020337.1\|WP_024639721.1\|4323621_4325118_-\|polyphosphate:AMP-phosphotransferase	unknown	unknown	gnl\|CDD\|274736
NZ_AP020337.1\|WP_011268614.1\|4306181_4306466_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_152092186.1\|4311671_4314677_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|226973
NZ_AP020337.1\|WP_024642228.1\|4305349_4305598_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_152092187.1\|4317427_4319641_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225711
NZ_AP020337.1\|WP_011268610.1\|4304007_4304583_+\|Bro-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|214989
NZ_AP020337.1\|WP_011268608.1\|4300771_4302028_-\|McrC-family-protein	unknown	unknown	gnl\|CDD\|370821
NZ_AP020337.1\|WP_152092184.1\|4302024_4303578_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|183088
NZ_AP020337.1\|WP_164920505.1\|4305800_4306145_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_003363288.1\|4319736_4320171_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179596
NZ_AP020337.1\|WP_003402551.1\|4320264_4322394_-\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NZ_AP020337.1\|WP_003402554.1\|4317044_4317395_+\|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|235516
NZ_AP020337.1\|WP_152092185.1\|4308463_4311580_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|226973
NZ_AP020337.1\|WP_046722284.1\|4304635_4304947_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_011268615.1\|4306481_4307825_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_096126860.1\|4315236_4316802_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_AP020337.1\|WP_003314545.1\|4322571_4323159_+\|YecA-family-protein	unknown	unknown	gnl\|CDD\|225855
NZ_AP020337.1\|WP_024639723.1\|4327466_4328135_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059

Protein	Function_ID	Function_description	E-value
NZ_AP020337.1\|WP_152092188.1\|4325266_4327264_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	gnl\|CDD\|234978	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC.	0
NZ_AP020337.1\|WP_024639720.1\|4323169_4323583_+\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	2.84101e-53
NZ_AP020337.1\|WP_024639721.1\|4323621_4325118_-\|polyphosphate:AMP-phosphotransferase	gnl\|CDD\|274736	TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP). [Central intermediary metabolism, Phosphorus compounds].	0
NZ_AP020337.1\|WP_003402551.1\|4320264_4322394_-\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_AP020337.1\|WP_152092186.1\|4311671_4314677_-\|autotransporter-domain-containing-protein	gnl\|CDD\|226973	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown].	4.64318e-94
NZ_AP020337.1\|WP_096126860.1\|4315236_4316802_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	6.75388e-64
NZ_AP020337.1\|WP_152092187.1\|4317427_4319641_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|225711	COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion].	8.48941e-56
NZ_AP020337.1\|WP_011268610.1\|4304007_4304583_+\|Bro-N-domain-containing-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	8.42849e-24
NZ_AP020337.1\|WP_011268608.1\|4300771_4302028_-\|McrC-family-protein	gnl\|CDD\|370821	pfam10117, McrBC, McrBC 5-methylcytosine restriction system component. Members of this family of bacterial proteins modify the specificity of mcrB restriction by expanding the range of modified sequences restricted.	1.12033e-147
NZ_AP020337.1\|WP_003363288.1\|4319736_4320171_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|179596	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional.	4.18696e-30
NZ_AP020337.1\|WP_003402554.1\|4317044_4317395_+\|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	1.62638e-07
NZ_AP020337.1\|WP_152092184.1\|4302024_4303578_-\|AAA-family-ATPase	gnl\|CDD\|183088	PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.	8.288e-29
NZ_AP020337.1\|WP_152092185.1\|4308463_4311580_-\|autotransporter-domain-containing-protein	gnl\|CDD\|226973	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown].	7.31127e-85
NZ_AP020337.1\|WP_003314545.1\|4322571_4323159_+\|YecA-family-protein	gnl\|CDD\|225855	COG3318, COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA [General function prediction only].	2.10006e-41
NZ_AP020337.1\|WP_024639723.1\|4327466_4328135_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	2.21237e-86

>NZ_AP020337.1|WP_152092186.1|4311671_4314677_-|autotransporter-domain-containing-protein
MQKSKCVGVVRYSFKPVATGALCALSFTFGCSAYADYVEQGKPGDAASWRSAEFQSDWGLGRIQADQAYAAGITGAGVKIGALDSGFDPSHPEATPSRYHAVTATGTYVDGSPFSITGAINPNNDTHGTHVTGTLGAARDGVGMHGVAYNAQVYVGNTNQNDSFLFGPNPDPQYFKAVYGALADAGVRAINNSWGSQPADVTYATEAGVRAAYAQHYNRGTWLDEAANVSRKGVINVFSAGNTGYANASVRASLPFFEPDLEGHWLAVSGLDSSNGQRYNQCGLSKYWCITMPGRLVNSTVPGGGYGIKSGTSMSAPHATGALALVMERFPYMTNEQALQVLLTTATQLDGSITQAPTNSVGWGVANLERAMRGPGQLLGTFDASLGAGLTDVWSNNISDQALIQRQAEDSAEQATWQQTLISKGWQNGVASTASQQDQADYATGTARAAAAAQRQYQGSLIKSGAGRLILYGANTYRGDTLVNGGVLSVNGSLVSAVQVNAGGTLGGNGQIGGLTARNGGIVAPGNSIGTLQVNGDVTLEPGSTYAVELSPTASDRIVATGSATVSGANMTLALENATPVALSAAPVQSVVGRQYNVLQAANGINGQFGSVSSNYAFLGGRLDYAANAVALNVEQTAAFNSVAQTSNQAAVATAAEQLGAGNAVYENLLLTQSAASARDSFQQLSGEIYPAIGSVLINDSRQVRDAVGERLGASVFGTDGNTAAQDNVWLKALGAWGKTDSRDDTAGYTSSIGGLLAGVDGNLADDTRLGVVAGYSDSSLNMGSGTHSRASVDSYHLGAYLGHEIGALRLTLGAAHSWHRIDAQRDVQVGGAAGKEKTRHDAQSTQVFTEAAYRIHLQPATLEPFANLAYVHLNTDGFTEKGDAAALSAGSDNRDAVLSTLGLRALKTIAISDRQKVDLSGSLGWQHNLSNTDSEQHLAFASSGNSFGIESSPLVRDAALVGAHASLALSKEARISLDYSGQLSSREKSHGVGLSLNWQF
>NZ_AP020337.1|WP_152092185.1|4308463_4311580_-|autotransporter-domain-containing-protein
MKDAFSTRHTSVKSLRQAIRAVNRASCGALACYLATLGVAHAAPYVEAGQAGNAASWRSAEFNADWGLGAINADQAYAAGYSGKDIKLGIFDQPVYAPHPEFDSPNKVVNLVTSGIREYTDPYIPVKAGDAFRYDGAPSLDSGGKLGNHGTHVGGIAGGNRDGGPMHGVAYNAQIISADNGDPGPEDGIVLGNDGAVYQAGWNALVNSGARVINNSWGIGITDRFDKGGRDPAFPHFTVQDAQVQFDQIRQILGTRPGGAYQGAIDAARSGVVTIFAAGNDYNLNNPDAMAGLGYFVPDIAPNWLTVAALQQNPDAAAAATTPYTLSTFSSRCGYTASFCVSAPGTRIYSSVLNGTSLADLTVGWANKNGTSMAAPHVAGSMAVLMERFPYMTGAQVADVLKTTATDLGAPGVDALYGWGMINLGKAINGPSMFVTEADIPAEFRIDGAYGDSQFVADLPGVGAIVDAGKPTQRTCTGPQCGLDVWSNDISGHGGLTKQGIGTLVLSGANSYTGPTLVNQGRLAINGSLASAVTVNNGGILGGNGSVASLSANRGGTVAPGNSIGTLQVAGDLNLAPGSTYAVEFSPTASDRIVVGGTATVSGANMALSLENDNPALLSSNQTRSVLGQQFNVLQAAGGVQGQFGSVTDNYAFLDGNLAYTGTGVTLALARNGDSFASAAQTDNQRSVAQAIEQLSAGNSVYESIILSQDTASARRAFTQLSGEVHPAIATQLINDSRQLRDAVGDRLRVEGLYDQPAPGSEDNSVWVKALGAWGKNSGSSDSASSTSSLGGLLAGVDGLISEHTRLGAMAGYSDTSLSLGDDTHSRASADSYHLGAYIGHEQGALRLTAGASHSWHRIDVKRDLQFGAFSDRQKVKRDAQSSQVFTEAAYRLNLQPLALEPFANLAYVHFDSDSFNEKGGATALKGSDDTRDTVLSTLGMRAGNRFNLNDTQKLDVSATLGWQHNLSDTSSEQHLAFASAGNSFNVQSVSMDRDAAVVGARASLALGRDARINLDYNGLLGARDKTHGVGLSLDWQF
>NZ_AP020337.1|WP_011268615.1|4306481_4307825_-|hypothetical-protein
MFFFHMLPSWDDIRRKLDRDIEPYRGGHFRTHRNEPLPSPALIIRRFNCVRSAFDRAEWEACRILGQRFVDLDISSIIKDLIDVVTQMAMIVVGSAFVGGVAGASAGALFFGVGAAPGGLMGAALGAQASTFILGILGLESIAESVIDGFPRIIHYYTRGISTAWQGPREQGWSSFMGDDPVAQNSAVQEIAQGHVEVVILLLGAMVQYITRGRGNARALANEMRASAKGERLGQWMLEHEDDLKKRPDLQRPEPGRGALEAQEALSTNRSKTADAAKPDALDQKTVSSKIDPKQLDLVTGHPNAHSLSVHGGKVSDGDLMLRAKSAIKPNGDVGPSVPPLSSAFHSDELLIFADQTIRNGGALERAIARQPGQDVIRVTAQEAGDIGVDLGRGFKRVLPTGNILKNLETNGAPEKLENLRSVEGLYQYNPSKKIWETITIFPAPAP
>NZ_AP020337.1|WP_011268614.1|4306181_4306466_-|hypothetical-protein
MKYENVRHMLKTVFCSDFNLAEDVAIGIYVNSLNSSGKTDEMRYELAECLRDQNVSWRDMLVNDEYEVLDFETEQEAKDYIKRILWQPLDEKTN
>NZ_AP020337.1|WP_164920505.1|4305800_4306145_-|hypothetical-protein
MKRSYQAVFIVPTGASKVLGDYGWEFNSLERLPESIGEYLVGCLGLKFEEEYAGIKKYTNGQINMSIFLDDNNEVESIYFQAFESFLAEIYKACQNEAVFSGPEIFISEELKSL
>NZ_AP020337.1|WP_024642228.1|4305349_4305598_-|hypothetical-protein
MLLEPVLAISIKNVAKMAAGSQPYVLRIDDGFVHEILAEVASVEKSLVVAGEITIELDDVLPGDINVGDMISFSCGRLDVIS
>NZ_AP020337.1|WP_046722284.1|4304635_4304947_-|hypothetical-protein
MHSLRNSHEKTGTGLFAILALLCAFTVQARETQVTDASIVKTIIQESIDSYPGRCPCPYNSASNGSQCGKRSAYSRKGGYAPICYKDDVTKEMISDYRRRLKD
>NZ_AP020337.1|WP_011268610.1|4304007_4304583_+|Bro-N-domain-containing-protein
MLSNLFRASACQARKVCAGFTPTPFHRHNRQLLALLLEDQPWFSARDLGRMIGWPLNERTLRKLDADQHRMITLDLHGEARSELMVSESGAYAMMVHHYHAENRGLRQWITHEVVPALRDGQVPFDDCTPNLSMLQWPGLSVSMLHWHSEPWIRLRDMPRVLTHPQMQVDARPHSLARSWWRAVLPASRLS
>NZ_AP020337.1|WP_152092184.1|4302024_4303578_-|AAA-family-ATPase
MPSLNQIFFGPPGTGKTYATVEATLQILDQPFLAKNLDNRSALKARFDELLAAGDVRFVTFHQSFSYEDFVEGLRATTDEQGQIRYEVVSGVFKSLCESIASELSGKYRAFKVGERYGTGYKVIRANDDILELEKPKGKNFGLAMSLLNALADDVSQGVLSVNDLSTGNWEEKLPNSTYDPYLVKGYRNIVPVLIEHMLSKRNEDFRTAEVAQSERPKVLIIDEINRGNVSRIFGELITLIEPSKRAGASEALEVTLPYSKERFSIPSNIHLIGTMNTSDRSLAALDIALRRRFTFIEVPPNPELLEDIEVDGIAIDELLSVMNQRIAVLLDQDHCLGHAYFMPLESNPTLERLAGIFQEQILPLLQEYFFEDWQRIQWVLNDQRKAPENRFLIQPSQDFSVLFGDAVTVGQNNERWELNLPAFENIESYLGVIDHNLSVSAPLEAKSVRTEGVDIRQAANGSIEVYRGGQQVKPAKPHLREIASKHGLPITSASGIKLNTRSLGRKIIKFLSEQQR
>NZ_AP020337.1|WP_011268608.1|4300771_4302028_-|McrC-family-protein
MKTTVTVREYARLTTSNVLSPTLDVAQVSPSAFDWLCETSSRFSKAGAALVQVEGRRWLKLDNYVGALETPCGTRIEILPKHFEQGDCIQQSRALLRRMIQRSLDLPTRKVGATALQRFDAPLTEWVMSSFLEALDHLIKRGLRFDYLRVEEEQRYLRGQLNTARQMRQPPGRQHHFQIRHDVFLPDRAENRLLKTALGIVCKTTQDPSNWRLAHELRSLLLEIPSSRDTAQDFKQWRHDRLMAHYQPVKPWCELIIQQQTPLAIAGEWQGMSLLFPMEKLFERYVAACLRDSLPPDATLHTQRSSEYLCTHEGKKVFQLRPDLMITQGEKSWVLDTKWKRLDSELGSKNYGLSQADFYQLFAYGQKYLGGQGDLVLIYPKRASFQEALPVFEFSEGLQLWVVPFDFDTGYLMWAMQH
>NZ_AP020337.1|WP_096126860.1|4315236_4316802_-|methyl-accepting-chemotaxis-protein
MRVNMPITQTERTFPASERLISTTDLNSHITYCNDAFVTLSGFTREELVGQPHNLVRHPDMPASVFAHMWETIKQGKPWMGVVKNRSRQGDYYWVSAYVTAVYENGRIVGYESVRSLPTRDQVRRAEALYARLRAGKAAVSASSSAAYHLIRQLPMILCALALAVGVYLLDDLPSIIMIPIVMVVLGVFLEVRQRSSIRKTLEEHPKAFTSALIALTYSDSRGPQAQLDLAMLSEEARLQTALTRLADTGESVRQHAGRSAQLSLRQAESLDQQRSEADQSATAINQMAATIQEVTHNVQNTAHAAEEADKLAQQGRGLADESLLAIRHMATSVTDIGNAVGELADATQSIGSVVDVITSIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSSTEQIQQIITSLRDGADRAVKTANKGEQISQESVASVEAVQKALDGISQSVTRITGMSQQMASASEEQSHVAETISQQITRIAQLCDESASQAQQGSQISSELEEMAQYLHSLAERFSR
>NZ_AP020337.1|WP_003402554.1|4317044_4317395_+|topoisomerase-DNA-binding-C4-zinc-finger-domain-containing-protein
MARNTASALKSLIKALRGLWSRVARGTPSQRQPPEPATPAVQSPEPQAPVRTRRAKPDKKPRQAAPPTPATEPAAPACPHCRKTMVIKVARTGKNAGEFWGCVAYPKCRGIRPIFR
>NZ_AP020337.1|WP_152092187.1|4317427_4319641_-|LysM-peptidoglycan-binding-domain-containing-protein
MLKSSLAAVEGAGRKAREAFGKGVLAVSLLTCSTLASALGLGEITLHSALNQPLDAEIQLLETGGLSNEDVVARLASPEAFAKAGMERVFFLNDLRFTPVLRGDRGVIRVVSSKPVTEPYLSFLVQLARPNGDLLHEYTLLLDPATSAQGLAATRSRNQQRSASSATESRMPVAPPAAVQGKHYTVASGDTLNGIASRLQGNKVSASQLADGIRSLNPQVFAAGASSALKVGQDLLLPDAAVLPTAAAPAASAAAPSPKPAELQRTAEQLSAAAIENQQLTQSLEALKAQTQELQEQMSGKDKQIIALRSDLATAQSAATPAVPAPATTTPAPAMPVAAPAAPAQPVAASGSDSFLSLPILLAAVLIVLLLVAFAYSKRRQQRKESAAPGVTPDDPLIKPAQAAMLPVFEVPAVAPQPVAQSPSTPPPAKPSPAQRSPGSAPDALDGVSIYIAYGRFTEAMGILRSALETQPERDDIRIRLLELLAEQGDGSGFVREEQAALEHGVDPQTIQDIRDRFPQLKAAEVAPVAAIVPAAALAASTLSFEKSEPEPSRYLQPEPEPEPAAQLDESAAAALNPQPADEFQLNLDDLSMDADWDLVDPFDSPPPRAKPAATQAPVEVDPGFSSDLTQLPEVFELSDEQFLSDFSEPEVVEPVEVIVPSAADGLSDDFLDSFMNDDADFDLLDLEEPPLSQINQAQVLIEDGDLESAREILQQIIDESDEEHQRMARELLASIS
>NZ_AP020337.1|WP_003363288.1|4319736_4320171_-|MarR-family-transcriptional-regulator
MPMTDEHRFGMQLGHLTRGWRAELDRRLADLGLSQARWLVLLHLARFTEPPTQRELAQSVGVEGPTLARLLDSLEKQGLVQRQAVLEDRRAKKILLSDTALPLIEKIENIANVLRIELFEGVSEEDLRVSMRVHSQILANLERS
>NZ_AP020337.1|WP_003402551.1|4320264_4322394_-|DNA-helicase-RecQ
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPGLLRDGLCVVVSPLIALMDDQVATLDELGVSAAALNSTLSAEQQRDLANRIRLGEVKMLYLAPERLVQPRMLSFLQNLKIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPEVPRIALTATADKRTREEIVTRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKKVDEVAVFLSDNGYPALPYHAGLPSETRAANQKRFLNEEGLIMVATIAFGMGIDKPNVRFVAHMDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEQHKLDAMLALCEETRCRRQTLLAYFDEDMPNPCGHCDNCVDGVQTWDATEPARQALSAIYRTGQRYGVGHLVDVLLGKSNDKVESFGHQHLSVFGVGKARTESEWRSLFRQLVARGLADIDLEGYGGLRLSETCRPLLRGEVSLELRQDLKPQTTSRSSSGSPASQLVRGEEREQWEALRALRRKLAEEHGVPPYVIFPDSTLLEMLRSKPGSMAEMAKVSGVGARKLERYGEAFLEVLSGKAEAPRVVADVRHELISLARAGMTPTQIAGQLQCSEKNVYTLLAEAIGKQQLSIEQALDLPEDLLGEVQDAFLDGEGELPPVSAIAEQFAGRVPEGVLYCVRAALQSEFEV
>NZ_AP020337.1|WP_003314545.1|4322571_4323159_+|YecA-family-protein
MSFAEQLTRLQVFLDADELHEEALDYVAAHGYLTALSICAEEVPEREWIDALFSEPPQYSSEAQQTEVEATLIALKAHIARQLASDEEFELPCDLDLGDDPDDSDLRGWCIGFMEGVFLRENAWFESAEEEVSEMLLPIMVGSGLFDEQPEFADIAQDANLMDDMIVQIPEALTALYLLCQAPDEKPAILKPRHH
>NZ_AP020337.1|WP_024639720.1|4323169_4323583_+|YbaN-family-protein
MAQGSPRTSRHRSVRYLLVAIGWLSVVLGVIGIFLPVLPTTPFLLLAAACFARSSPRFYDWLVNHPQLGPWVRDYLEGNGIPLKGKVYAIGLMWLSISLSCYLVPSPWARVFMLTSAVLVTLYILRQKTRAPGDRTR
>NZ_AP020337.1|WP_024639721.1|4323621_4325118_-|polyphosphate:AMP-phosphotransferase
MFESAEIGHAIDDETYEAALPQLREALLEAQIDLHEQAGRQIIVLINGIEGAGKGETVKLLSEWMDPRLIEVRTFDQQTDEELAHPPVWRYWRQLPAKGRMGIFFGNWYSQMLQDRVHGRFKDAVLDQAISGAERLEKMLCDEGALIFKFWFHLSKKQMKLRLKTLKDDPLHSWRISPLDWQQSKTYDKFVRFGERVLRRTSREYAPWHVIEGVDANYRSLTVGRLLLEGMQAALNKAEPETAALTVGPLAIHSNELTLLDSLDLSLNLSKDDYQQQLITEQARLSGNMRDKRMKSHALLAVFEGNDAAGKGGAIRRVAAALDPRQYAIVPIAAPTQDERAQPYLWRFWRQIPARGKFTIFDRSWYGRVLVERVEGFCSESDWKRAYSEINDFEEQLTDAGVVVVKFWLAIDQQTQLERFKEREKIPFKRYKITEDDWRNRKKWPDYRQAVGDMVDRTSTEIAPWTLIEANDKRWARVKVLRTLNEALEAAFARDKKK
>NZ_AP020337.1|WP_152092188.1|4325266_4327264_+|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC
MTITRHAQIDWDEHGNPRSRDFSDVYFSTESGLDETRHVFLVQNDLRRRFTKLPDGGRLIIGETGFGTGLNFLCAWQLFDECAPANARLQFVSVEKYPLSHADLQRALALWPELSPFAGQLLDQYVAVHEGFQRLVFAGGRVTLTLLIGDALQMLPQLDGQMDAWFLDGFAPAKNPEMWTPELFAELARLSTSSTTIGTFTSTGWVRRSLNAAGFKMKRVPGIGHKWEVLRGTFIAWPEDVAHPPAAKPWFARPAPIGGERKALVIGAGLAGCATAQSLAQRGWQVSLLERHAAPAQEASGNPQGVLYLKLSAHGTTLSQLILSGFGHTRRLLERLQRGVDWDACGVLQLTFDDKEALRQKQLADAFPESLLHLLDKPAAEAQSGVALNSGGLFYPEGGWVHPPALCHAQAEHANIRLIAHQQALELRRVDDQWQVWSEEQLIDSAPVVVLAGAADIQQFSQSADLPLKRIRGQITRLPQTQASTALRSVVCAEGYVAPARLGEHTLGASFDFNSTDLTPNLADHLDNLGLLREISEDLTSRLDTADLSPEQLQGRAAFRCTSPDYLPIVGPLADREAFMQAYAALGKDARQVPDITCPWLDGLYVNSGHGSRGLITAPLCGELIAAWLDNEPLPLPRSVAEACHPNRFALRGLIRGKGKQTVGH
>NZ_AP020337.1|WP_024639723.1|4327466_4328135_+|ABC-transporter-ATP-binding-protein
MLQVRNVFKRYTTAQGPLDVLRGVDLHLAQGESLALMGESGSGKSTLLHLVAGLDQVDDGSIEVAGQRLDLMNESQLANWRRTEIGLVFQQFNLIGSLKIADNLAFQARLAGRVDADWQAHLIERLGLAALLDRYPEQLSGGQQQRVAIGRALASRPGLLLADEPTGNLDEATSDEVLQLLLDILADSPTSLLMVTHSPRVAQRLSRKVVLHLGRLADEGER

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Crispr_ID: NZ_AP020337_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP020337_5

4375445-4375546

Unclear

Consensus_repeat	Method
GCTCCGCATGGGTATGCCGTTCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_AP020337_5

>merge|NZ_AP020337|5|4375445-4375546|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCTGGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCATGCTCCGCGTGGGTATGCCGTTCT

>NZ_AP020337|5|5|4375445-4375546|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCT	GGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCAT
GCTCCGCGTGGGTATGCCGTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP020337.1\|WP_152092201.1\|4386095_4387358_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_AP020337.1\|WP_003402493.1\|4367553_4367745_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_AP020337.1\|WP_152092200.1\|4385070_4386099_-\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223999
NZ_AP020337.1\|WP_003363371.1\|4367957_4368338_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_002554403.1\|4370806_4370995_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_011268653.1\|4382591_4383491_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176150
NZ_AP020337.1\|WP_011268654.1\|4383579_4384380_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_AP020337.1\|WP_003402477.1\|4376031_4377369_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_AP020337.1\|WP_011268644.1\|4368415_4368817_-\|DUF2177-family-protein	unknown	unknown	gnl\|CDD\|378319
NZ_AP020337.1\|WP_011268645.1\|4368961_4369594_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|239322
NZ_AP020337.1\|WP_011268648.1\|4371819_4372548_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273922
NZ_AP020337.1\|WP_164920569.1\|4377519_4378755_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236532
NZ_AP020337.1\|WP_032619965.1\|4384659_4385013_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227262
NZ_AP020337.1\|WP_152091779.1\|4373666_4375042_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_AP020337.1\|WP_003412760.1\|4371162_4371675_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_011268646.1\|4369663_4370500_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
NZ_AP020337.1\|WP_003402465.1\|4382158_4382572_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_152092199.1\|4379672_4382045_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NZ_AP020337.1\|WP_011268650.1\|4378766_4379456_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_AP020337.1\|WP_003425465.1\|4372617_4373481_+\|lipoprotein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP020337.1\|WP_003402493.1\|4367553_4367745_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	5.96802e-09
NZ_AP020337.1\|WP_152092200.1\|4385070_4386099_-\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	6.25198e-44
NZ_AP020337.1\|WP_152092199.1\|4379672_4382045_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_AP020337.1\|WP_011268653.1\|4382591_4383491_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176150	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.71866e-98
NZ_AP020337.1\|WP_011268654.1\|4383579_4384380_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	3.46831e-63
NZ_AP020337.1\|WP_003402477.1\|4376031_4377369_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.82325e-136
NZ_AP020337.1\|WP_011268644.1\|4368415_4368817_-\|DUF2177-family-protein	gnl\|CDD\|378319	pfam09945, DUF2177, Predicted membrane protein (DUF2177). This domain, found in various hypothetical bacterial proteins, has no known function.	4.24722e-43
NZ_AP020337.1\|WP_011268645.1\|4368961_4369594_+\|DsbA-family-protein	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	7.203e-44
NZ_AP020337.1\|WP_011268648.1\|4371819_4372548_+\|hypothetical-protein	gnl\|CDD\|273922	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.	6.73715e-46
NZ_AP020337.1\|WP_164920569.1\|4377519_4378755_-\|HAMP-domain-containing-protein	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	2.18575e-50
NZ_AP020337.1\|WP_152091779.1\|4373666_4375042_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.5151e-50
NZ_AP020337.1\|WP_011268650.1\|4378766_4379456_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.36791e-76
NZ_AP020337.1\|WP_032619965.1\|4384659_4385013_+\|hypothetical-protein	gnl\|CDD\|227262	COG4925, COG4925, Uncharacterized conserved protein [Function unknown].	3.29193e-42
NZ_AP020337.1\|WP_011268646.1\|4369663_4370500_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.89195e-109
NZ_AP020337.1\|WP_152092201.1\|4386095_4387358_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	6.63014e-103

>NZ_AP020337.1|WP_152091779.1|4373666_4375042_+|IS3-family-transposase
MGKYTEQAKLAAVKEYCAGKAGLRDVAHRHDVDFSCLRQWVAAYQIHGPAALKEKRRQRYSDEFKLAVLKRMHDERLSLRQTAALFDIRQFGIINLWQRLFDEGALNASSKPPKKVGRPRKMTTPLPPVNSAPINDESRSRDELLAEVKQLRMEVDYPKKARCLGSEEATNSAAEKAQIVMELRPLHPLDGLLKFAGLARSTFYYQQKVLLADDKYAGLKDLIQATFYEHKGRYGYRRITAALRRAGHLVNHKTVQKLMGQLGLKSLIRVKKYRSYKGETGKAAPNLLKRDFKAQYLNQKWATDVTEFKVGGQKLYLSPIMDLYSGEIISYAIARRPLYSMVDEMLEGAFKRLGPHEKPILHSDQGWQYRMPIYQRLLNENSIAASMSRKGNCYDNAAIESFFSTLKSEFFYLNKFNDLDELQAGIEEYIEYYNHSRIKLKLNGLSPVEYRMQAAKAA
>NZ_AP020337.1|WP_003425465.1|4372617_4373481_+|lipoprotein
MQSLFKAFVTLLMTVALLAGCNQVGLAYRNLDVIIPWTLSDYLDMNSEQKGWLDVRLKQHLSWHCSTQLPEYLTWLDKLEDMVKTDQVTYEGLQARTSEAKEAIAKISKEITPSAVELLSRFDDKQVQEMQESFAKDQRKRENKYLDQPLERQIAERADRMQKRVTPWVGKLNQAQKDRIQAWSASLGEQNKAWIENRTRWQNLFLATVQQRQASDFPQRIAALLQDRETFWTPEYRKAYDQTEKAAISLIVDITALSTPEQRAKLLSRIADMRKDFTDLDCLKSQK
>NZ_AP020337.1|WP_011268648.1|4371819_4372548_+|hypothetical-protein
MLSHRLHVLSFSAMLVCQSVSAQVLERDLGDFDLKLATTPTRSMAQGLVTPTGGSGSFHGGMDLTHESGFYFGQWAPNMGLASDTGMELDSYMGFKKPFDNTLGYELGMIRYSYPDTSQIDSHEFYAGLRMRDSRIGAAFSNDVGTRDSTVFVDLGAIEQLGVGVRMQYANHQFDTPQSAADGGLINGFNDWSLNLSRPWLGIDMNLIYSGSSLSGGDCSVYSGHNARCDGTFTLKAVRSFF
>NZ_AP020337.1|WP_003412760.1|4371162_4371675_+|hypothetical-protein
MKNWMLFGALVYLGGCASHHCENGPNDSQLTDSPCRAEHLLYQNDMLQAKLLISEDNRENYELAEAMLRRAALDDASGEAEFYQAVLLIRQQADQKQIIDLLQTAAKHKHPLAIALLSQQLSVSDPKLAERYQSEYAQLDVAKSGYPSFEQALVVIRGLIIPSARTTAAN
>NZ_AP020337.1|WP_002554403.1|4370806_4370995_+|hypothetical-protein
MAAMRIKASHSKAKPAPAVETSDSINAQIAAFLKSGGEIQQIAKGVSGQTFAPSKQINLGKK
>NZ_AP020337.1|WP_011268646.1|4369663_4370500_-|GntR-family-transcriptional-regulator
MALIGRYNSLQIVKHTNFGLYLDGAQDGEILLPNRYIPKDVPTEDEDWLNVFIYLDSEDKLLATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLPKDLLLPYSEEKRTLQAGDYCVVHVYLDKHTRRITATARLDRYLDKTPANYSVGQEVDLLVAEATDMGFKAIINNKHWGLIHKNEVFKFMRAGKQEKGYIKEIRSDGNISLSLQPVGAEAASSLNSKILTKLRENNGTLPVSDKSDPQVISGLFGVSKGNFKKAIGALYKQGQIVIHADRIELV
>NZ_AP020337.1|WP_011268645.1|4368961_4369594_+|DsbA-family-protein
MNTVGPLKIDVWSDYVCPFCYLQLAVLEQLQQTYGERLEFNWHAFELRPDPLALLDPSADYLRETWSRSVLPMADRRQVMMKMPSVQPRSRKVLEAAVFARNAGGFEAFHKEAYRAFFEKGLDISETHTLLELATTTGLDRQAMEQALNAGHFEKAVLDDRQLAQKLGLRAVPVVLLRRSDEALEDARVFNGTLPFERLSQEIDALATWA
>NZ_AP020337.1|WP_011268644.1|4368415_4368817_-|DUF2177-family-protein
MKRILIAYFGTLLAFLILDGLWLGVLMGPTYREWLGPLMLDTPVLGPAIAFYLLYGAGVVFFGVMPALRVQRLSHATLCSGLLGLIAYGTYDLTNWATLQGWPAQLALVDHAWGTVVSALAGTAGYLAVRRFA
>NZ_AP020337.1|WP_003363371.1|4367957_4368338_+|hypothetical-protein
MKLDKKLAIARRNQDLGGAVLGVNNTHFAVLDHKRNIWWFDLPVPRLQVGQYEWLHLLLHTPETDQLLHLKVTTVFMRDHMEGLEVRNADKRKPTVSLELSADKDSFLKDMRPKGSNLSFAGFLQK
>NZ_AP020337.1|WP_003402493.1|4367553_4367745_-|CsbD-family-protein
MSSTSDKAKGMANEAVGNVKQAVGKATDNDKLQAEGKVQELKGEGQQTVGKVKDAIKKGVDKA
>NZ_AP020337.1|WP_003402477.1|4376031_4377369_-|DEAD/DEAH-box-helicase
MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNRPKSDLVSQDGMAPLKKRSTPAPAAE
>NZ_AP020337.1|WP_164920569.1|4377519_4378755_-|HAMP-domain-containing-protein
MFWKLFLAFWLATSLTFMVGAGLFMFTQSGRGDPSFSTVLDNEVRILQRSGIAAGQALLDAWQPEGQGRVGLYDNQGLLLAGEALENPRFELAVHTREGALVHIRSTQRPNHDDQPSHLNPLITGTVMSALFSWFLSSYLVAPLMKLREAMGKVARGRFDTRVKPDMGRRRDEIVDLAEDCDRMANQLKVMADSQQQLLHDISHELRSPLTRMSAAIGLLRQEPTQLDMLERIERESERMDSLIEELLTLARMQSDVESLTREKVDVISLLAAIVEDAEFEAGLKQCWVRLQAPGSFVAQVDSELLYRAFENVIRNAVRHTAVGTDVVVVANVQAQPLCLMVNVIDQGPGVDEACLQRIFQPFERGPENAAQGFGLGLAIALRAIEMHGGQIAARNRPGGGLVVDVLLPVS
>NZ_AP020337.1|WP_011268650.1|4378766_4379456_-|response-regulator-transcription-factor
MTSVLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEIEALSGRHDIVVLDIMMPRISGIEVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAVSVVDAVRDVIQAGELMLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSMNALGRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYMLLTP
>NZ_AP020337.1|WP_152092199.1|4379672_4382045_+|outer-membrane-protein-assembly-factor-BamA
MISSRLLLSFCLLLSVPLAHADTFSISDIRVNGLQRVSAGSVFAALPLNVGDQADEQRLADASRSLFKTGFFQDINVARDGNVLVINVVERPSIASIEIVGNKVISTDDLMKGLKQSGLSEGEIFQRATLEGVRNELQRQYVSQGRYSASVDTQALPAPRNRIALKITIDEGTVASIQHINVVGNTVFSDEQLADQFQLKTSNWLSFFKNDDKYAREKLSGDLERLRSWYLDRGYINMDINSTQVSLTPDKKGVFITVNITEGDRYTVGSVKLGGDLKVPKDQLEQLILVKPGQVFSRKVMTDSTNLITRRLGNDGYTFANVNGVPKANDADHTVDISFVVDPGKRAYANRINFRGNTKTADEVLRREMRQMEGGWASTYLIDQSKVRLERLGFFKEVNVETPAVPGTDDQVDINYAVEEQASGNITASVGFSQSAGLILGGSISQNNILGTGNFASLGMTRSEYQTKYNFAFTNPYFTPDGVSLGYNVFYNATDYSKYYDDDDEVSYYSLNSVGAGVNLGYPISETSRLTYGLSIQRDTLDPGSYSADEIYDFIEREGDAFTNLKASVGWSESTLNKGVLATRGHSQSLTLTSTVPGSDLQFYKLDYNGQTFLPLSDTTSLRLHTKLGYGNGYGDTDGLPFYENYTAGGQATVRGFKDGTLGPRNTPATGTYASQGQIYYSDRDTEALGGNILITGGMEYLFPMPFVKDQKSLRTSLFWDFGTVYADKCYLTTTQNCGNINIDQMASSVGVGVTWYSPLGPLSFDLAVPIKKPEDAETQVFQFSLGQTF
>NZ_AP020337.1|WP_003402465.1|4382158_4382572_+|hypothetical-protein
MSREVRQITPDVQEIIQHALRSLLGKGFVIALFGSEDATGAMHYHLRIDHDATGLGIEHHDHVEDGFIDDIFMLATRMKAMLKQRETLSRMHGGSQATGQVRLLTWITEDNSQTVVQTAEAAGRECLSALRERRLRA
>NZ_AP020337.1|WP_011268653.1|4382591_4383491_-|LysR-family-transcriptional-regulator
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPRGMTPTARAEELREPLRQALAALESALLPGRDFDPATADHTWRVAASDYATTALIWPSLGRLRNSAPGTRLAMLNKQPVSLAADLESGRLDLALHTRDEAPPKLRQRSLIHERYVLAARHDHPDLVQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALTCSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID
>NZ_AP020337.1|WP_011268654.1|4383579_4384380_+|NAD(P)H-dependent-oxidoreductase
MNVLIVYAHPEPRSLNGSLKDFAVDHLQNNGHQVQVSDLYQMGWKPIIDANDAPGLESSSRFDPALESQRVFAAGIQPPDIEAEQARLLWADAVIFQFPLWWFSMPAIMKGWIERVYACGFAYGVGEHSDQHWGDRYGEGTLAGKRAMLTVTMGGWDSHYSERGVNGALNDVLFPIQHGILFYPGFDVLAPFPVYRAGKVDSATFARICADYGNRLDTLFTLEPLPFRRQNDGDYEIPALTLRPELAAGRQGLGIHLRDEDGPADL
>NZ_AP020337.1|WP_032619965.1|4384659_4385013_+|hypothetical-protein
MNVRMYAGDKVVMLHLDDSETARDFVSLLPVELTLEDYAATEKISMLPRKLNVTGAPAGVTPIEGDIAYYAPWGNLAIFHKGFKYSHGLIRLGRVESGIEVIRQPGTVAVRFEVAND
>NZ_AP020337.1|WP_152092200.1|4385070_4386099_-|dienelactone-hydrolase-family-protein
MKKILLMLGLLISSYAATGADMSHGADNFYTSDKVVAQKVLFNNQYKMKVAGNLFIPQGSNPNVKAPAIIVGHPMGAVKEQSANLYAQKLAEQGFVTLSLDLSFWGGSEGQPRNAVSPDLYAEDFSAAVDFLGTQTFVDKKRIGVLGICGSGSFVISAAKIDPRMKAIATVSMYDMGAANRNGLKHSQTLAQRKKIIEQAALQRDVEYSGGDTAYTSGTVHKLTDTSGPIEREFYDFYRTPRGEFTPEGQSPELTTHPTLTSNIKFMNFYPFNDIATISPRPMLFIAGSEAHSLEFSEEAYKLAGQPKQLIIVPEAGHVDLYDRVDLIPFDKLGEFFKNNLK
>NZ_AP020337.1|WP_152092201.1|4386095_4387358_-|MFS-transporter
MQAFDSTLKGAEATTHPPAWGAVFSMALCVVVLIASEFMPVSLLTPIAQDLGISQGQAGQAISISGFFAVLTSLLNTPLTGHLDRKPVLLGFSLLLLVSGVIVTLASNGWLFMTGRALLGIAIGGFWSMSTATVMKLVPKQSVAKGLALINGGNALAATVAAPLGSFMGQYIGWRGAFFLVIPLAALAFAWQWLSLPAMRSQPNNRARNPFRLLRNPQVAVGMSAILLLFMGQFAVFTYLRPFLEEITGVSVNTLSLMLLALGASGLVGTYLIGRLLHKGLYACLIVIPLLMAVLAVALTGLGHSPQAVAIVLAVWGLIATPAPVAWGLWLSRTLPDDAEAGGGLMVATIQLAITAGAGIGGALFDSLGWWSPFAFGGVLLACSAALAWTARDNALLQEKNTGQGRADKRGSISQRGNTP

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Crispr_ID: NZ_AP020337_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP020337_6

5401386-5401480

Orphan

Consensus_repeat	Method
AAACGTTTGGCTGATGAAGCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP020337_6

>merge|NZ_AP020337|6|5401386-5401480|CRISPRCasFinder
AAACGTTTGGCTGATGAAGCAGCGGCTGCAGAAGCCAAACGCTTGGCTGATGAGGCAGCGGCTGCAGAAGCCAAACGCTTGGCTGATGAAGCAGC

>NZ_AP020337|6|6|5401386-5401480|CRISPRCasFinder
AAACGTTTGGCTGATGAAGCAGC	GGCTGCAGAAGCCAAACGCTTGGCTGATGAGGCAGCGGCTGCAGAAGCC
AAACGCTTGGCTGATGAAGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP020337.1\|WP_011269150.1\|5403389_5403638_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223991
NZ_AP020337.1\|WP_162884967.1\|5398082_5398397_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_011269155.1\|5408982_5409798_+\|formate/nitrite-transporter-family-protein	unknown	unknown	gnl\|CDD\|376497
NZ_AP020337.1\|WP_002551877.1\|5386985_5387201_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_AP020337.1\|WP_003411788.1\|5389700_5391551_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_AP020337.1\|WP_011269152.1\|5404455_5404812_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_154686162.1\|5403145_5403286_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_032655936.1\|5387677_5389633_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_AP020337.1\|WP_103714631.1\|5397094_5398057_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|234698
NZ_AP020337.1\|WP_024642071.1\|5391819_5394306_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
NZ_AP020337.1\|WP_152092341.1\|5406706_5408257_-\|Effector-protein-hopAB1	unknown	unknown	gnl\|CDD\|370260
NZ_AP020337.1\|WP_172980081.1\|5398788_5399235_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_AP020337.1\|WP_002556076.1\|5396508_5396757_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_AP020337.1\|WP_116887015.1\|5410573_5414614_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|274093
NZ_AP020337.1\|WP_024650833.1\|5404077_5404374_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_011269146.1\|5398469_5398709_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_024650832.1\|5403689_5403941_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_152092342.1\|5409944_5410577_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NZ_AP020337.1\|WP_003304103.1\|5396145_5396496_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NZ_AP020337.1\|WP_011269149.1\|5402649_5402925_+\|bacteriocin-immunity-protein	unknown	unknown	gnl\|CDD\|319897

Protein	Function_ID	Function_description	E-value
NZ_AP020337.1\|WP_011269150.1\|5403389_5403638_-\|hypothetical-protein	gnl\|CDD\|223991	COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only].	0.00493381
NZ_AP020337.1\|WP_003411788.1\|5389700_5391551_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_AP020337.1\|WP_002551877.1\|5386985_5387201_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.32976e-16
NZ_AP020337.1\|WP_011269155.1\|5408982_5409798_+\|formate/nitrite-transporter-family-protein	gnl\|CDD\|376497	pfam01226, Form_Nir_trans, Formate/nitrite transporter.	1.34094e-89
NZ_AP020337.1\|WP_032655936.1\|5387677_5389633_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_AP020337.1\|WP_103714631.1\|5397094_5398057_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	4.75338e-55
NZ_AP020337.1\|WP_024642071.1\|5391819_5394306_+\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	9.0253e-116
NZ_AP020337.1\|WP_172980081.1\|5398788_5399235_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.36702e-16
NZ_AP020337.1\|WP_003304103.1\|5396145_5396496_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	2.54014e-05
NZ_AP020337.1\|WP_116887015.1\|5410573_5414614_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|274093	TIGR02353, NON-RIBOSOMAL_PEPTIDE_SYNTHETASE, non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.	0
NZ_AP020337.1\|WP_152092341.1\|5406706_5408257_-\|Effector-protein-hopAB1	gnl\|CDD\|370260	pfam09046, AvrPtoB-E3_ubiq, AvrPtoB E3 ubiquitin ligase. The E3 ubiquitin ligase domain found in the bacterial protein AvrPtoB inhibits immunity-associated programmed cell death (PCD) when translocated into plant cells, probably by recruiting E2 enzymes and transferring ubiquitin molecules to cellular proteins involved in regulation of PCD and targeting them for degradation. The structure of this domain reveals a globular fold centred on a four-stranded beta-sheet that packs against two helices on one face and has three very extended loops connecting the elements of secondary structure, with remarkable homology to the RING-finger and U-box families of proteins involved in ubiquitin ligase complexes in eukaryotes.	1.27223e-45
NZ_AP020337.1\|WP_152092342.1\|5409944_5410577_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	6.59695e-10
NZ_AP020337.1\|WP_002556076.1\|5396508_5396757_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	0.00469753
NZ_AP020337.1\|WP_011269149.1\|5402649_5402925_+\|bacteriocin-immunity-protein	gnl\|CDD\|319897	cd16363, Col_Im_like, inhibitory immunity (Im) protein of colicin (Col) deoxyribonuclease (DNase) and pyocins. This family contains inhibitory immunity (Im) proteins that bind to colicin endonucleases (DNases) or pyocins with very high affinity and specificity; this is critical for the neutralization of endogenous DNase catalytic activity and for protection against exogenous DNase bacteriocins. The DNase colicin family (ColE2, ColE7, ColE8 and ColE9) in E. coli, and pyocin family (S1, S2, S3 and AP41) in P. aeruginosa, are potent bacteriocins where the immunity proteins (Ims) protect the colicin/pyocin producing (i.e. colicinogenic) bacteria by binding and inactivating colicin nucleases. The binding affinities between cognate and non-cognate nucleases by Im proteins can vary up to 10 orders of magnitude.	2.25745e-33

>NZ_AP020337.1|WP_172980081.1|5398788_5399235_-|GNAT-family-N-acetyltransferase
MLLKRVGLAALLDTPTAFGVSYKTAADYDCDQWKQRASSKGTEFWLAFEEGRPVGMVGAAVSESEHFNLIGMWVEPAARGSGIAKELVDIVKARSTERGFDGVFLDVSPENVRASSFYLKQGFVFLDEWEPLESHPHITVQTMVWTRQ
>NZ_AP020337.1|WP_011269146.1|5398469_5398709_-|hypothetical-protein
MPMIDTSPYAAQLADMDAAAWAFDQASKALALAEENDDEPACEAARAAEQRAREAWRVAAQEVGRVVHMLVKMGEGRYS
>NZ_AP020337.1|WP_162884967.1|5398082_5398397_-|hypothetical-protein
MTEEEMRQALFGSGGSTVRLAAPQPQTNTGNNPSAKAAAKRKIAKNFVPRLIVTLRVGNEYEGTTELITHEADTLSRLQAEIDAMKIARKKYRHVKLVSVKHAN
>NZ_AP020337.1|WP_103714631.1|5397094_5398057_+|tyrosine-type-recombinase/integrase
MQEVTKVVSDDHRRLTAVEFQQLARVPSAVEWFANLDNPRTRRAYQNDLTDFSSFIVLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALASLFDHLLENNAVVGGNPVHGVKRPRIESNEGKTPALGDHQAKALLDAPDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHMYLERSGHHLVDKKVPLFISLRGKSTGAGVSANGIYTVVGAYAKKAGIKVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIYDRRENRPEDSPTFKVKY
>NZ_AP020337.1|WP_002556076.1|5396508_5396757_-|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MRVETISFLKRNAADLPLDEPLVVTQNGVPAYVVESYADRKRRDESIALVKLLAISSREYSQGKHCSTDELKARLSRRFTQK
>NZ_AP020337.1|WP_003304103.1|5396145_5396496_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MNTFALRFTDVAQQSLEDQVEHLAVHQGFSSAAQRIDTLIDAIQDKLLSTPLGYPVSHQLSELGVLHYRELNTDGYRIFYEVRDAGDINVIVVALVLGSKQSVEQALIRYCLLQAI
>NZ_AP020337.1|WP_024642071.1|5391819_5394306_+|bifunctional-diguanylate-cyclase/phosphodiesterase
MRGVINTSDREASCLSEGKFASIFAQCPDAMLIVSLADGHIMDANEAFVERTGIPLDEVIGKTPTELNLWAVPGIGPKVLLQLQTGDIHNLEIPFRRKNGETFSGLMSAQPFEHSPIPAVLVIVRDITQLKLARQQLQLSEEKFAKAFHASPEGMAITRQQDGMLLEVNEGFCRLTGYSEKYCLDHSTFELGIWVDLSERSKLIERMKKHGFVKDLRVRIRHNNGDIRLCELSSQPLIISGEDCLLTITRDITESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGQTPRLLASGQHDSAFYAAMWHQLAAEGHWQGEISNRRKNGELYPSWLTISAVRNKDNLLTHFVAVFADISSLKQAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSLGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQTSDAQAIANKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESYTCDLSDQASERIALEQELRRALERNQLTLAYQPKIDLLTHTMAGAEALIRWNHPTFGEVPPEHFIPLAEENGMILQIGDWVLEQACRQMGVWRKTCQPFGPLSVNLAGAQLRQTNLLERIEQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSEGCEQIQGYIISLPLDAEEFRARFLLMNLSDFSDSTAAKPPL
>NZ_AP020337.1|WP_003411788.1|5389700_5391551_+|RNA-polymerase-sigma-factor-RpoD
MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHESAPDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTSEGGRLSDVLSGYIDPDDGIAPPAEVPPPVDPKAVKAEGADDDEEESADASDEEDEVESGPDPVIAQQRFGAVSDQMEITRKALKKFGRDDKHAIAEMVALAELFMPIKLVPKQFEGLVERVRGALERLRAQERAIMQLCVRDARMPRADFLRQFPGNEVDESWTDALAKGKSKYAEAIGRLQPDIQRCQQKLSALEEETGLKIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLDE
>NZ_AP020337.1|WP_032655936.1|5387677_5389633_+|DNA-primase
MAGLIPQSFIDDLLNRTDIVDVVSSRVQLKKAGKNYTACCPFHKEKTPSFSVSPDKQFYYCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPLLTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDPDTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGANLRILMRQRLTEITGLTGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQQEWTQKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAEKVENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKEWLIEADNLEQQFFDTITSLSARQRERSLEHLISKARQTELSAEEKIQLRELLNRNVPAQTPTSTGA
>NZ_AP020337.1|WP_002551877.1|5386985_5387201_+|30S-ribosomal-protein-S21
MPAVKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTSERKRKAAAAVKRHAKKVQREQRRAVRLY
>NZ_AP020337.1|WP_011269149.1|5402649_5402925_+|bacteriocin-immunity-protein
MEFKNKYEEYTEAEFLAFLEEFFVNKQNLEGDEYGQYISKLAKHFDDISEHPEKNGLIFYPAEGVEDSPAGVLKVLKEWRAANGKPDFKKA
>NZ_AP020337.1|WP_154686162.1|5403145_5403286_-|hypothetical-protein
MSHHKTPDAPAGMLVLDQRQVSLTEMFAGADDRLAEGEQAHLDALR
>NZ_AP020337.1|WP_011269150.1|5403389_5403638_-|hypothetical-protein
MMKRAAITTMAFLIALPSIYWLLCEAAMMFEMASTGAKSRAELADDFGLGIIGLFVVAPATVIGAVITASFFWWKMRPRRRC
>NZ_AP020337.1|WP_024650832.1|5403689_5403941_-|hypothetical-protein
MATTTLIQIEQDDPKVIAAAQQRHAELELKMDEHGTELMHSAVMWELGYLFALRTCEVLSITVYDELAAKVESSVEVRPRVTV
>NZ_AP020337.1|WP_024650833.1|5404077_5404374_-|hypothetical-protein
MNTDITGNQIHRSPEFAQTDIGDMSLHRNLHNELEVRRDQILQAATDAEVWQHHTYAKGLVRGLEVGGNITPAQALKLYDIYDAAQADREGVLSDTGR
>NZ_AP020337.1|WP_011269152.1|5404455_5404812_-|hypothetical-protein
MILDSFVRATIRHVENVEPCDDPADFYSGPEFDSFTVTVEHGPAEAFLSWFHQKNEYGLCRVGDTAEFIDFGSSDSLDEDKVIEFTFDQFFPLWLKHAANLAKADIAGMASAALRNQN
>NZ_AP020337.1|WP_152092341.1|5406706_5408257_-|Effector-protein-hopAB1
MSGINGAGPSNFFWRWRADDEPVTERERDSSSGANLTNSPQLRPESPTVSGRRLLRSNALSRQTREWQETTSASAERGTPPVEPRQPPEAQPAERIVAERIVQELVRAGANLNSVRTMLRNVMDNNAVAFSRVEWNILLQHFPDMHTNGISSDSVLANELRQTLRQVVHQQRTQRALAPILSPAPSRPVASSSRSSQRTLLGRFTGWMAPRQTSSSSQATSSTSVDRHPQDLNQLESLRLADAERRNRSANQTDTDEALRRLTQAGVDMERLSTSLGRYIHSFQPAPPDLRRVLESVGIDPDIPEELTLVNNPVLNLNVALNRMLASRQATTESSSVFPSRAGDTRVRTLPVMPEREDNENNVAYGVRLLRLNPEAEVERVVEAFITDPSSRPEVVADIHAVLRSITSQFRQLRTISKADAESQDFRDAADYPDDPTSCLFGEDLSLSNPHQQVIGLAGESTDILQPYSQEGNKALRFMDMKKLAEHLASKPVHPMNRDRLDDKNIAGYAFRVVPD
>NZ_AP020337.1|WP_011269155.1|5408982_5409798_+|formate/nitrite-transporter-family-protein
MSLNTPQQIAEIAVESGVKKAHLGLSSLMILGFLAGAFIALGFLLDIHVSTMIPHEWASLGNLLGAVVFPVGLILVVLAGGELLTGNMMSLPMALFAGRIGLGQLVRNWVLVTLANLIGALFVAYCFGHVVGLTEGAFMAKTVAIANAKVGASFEQAFISGIGCNWLVCLAVWLSYASKDVIGKVVGMWFPVMAFVAIGFQHIVANMFVIPAAIFAGALSWAQFGDNFVPVFLGNAVGGAVFVGLAYHLAFSNKATQPAELSRTSGAQTPE
>NZ_AP020337.1|WP_152092342.1|5409944_5410577_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MKRGASWAFDEDGQLAPPKPFPRQNVLLVSCVTRPGCARDEARSHIRACLRTAVEQWLELPSGAITFISAPGAAPRLLIDGLPEPGFSISHEAGCSLAAINLQGAVGVDLMQIQAVPDWHAVAQDYLGADVATRLSGLPESVRTIAFAKAWCRREAFLKLHGLALEEWTAVGGLQGVGVEVELEEGMVGVVALSQVLMEYMNQAERRTAP
>NZ_AP020337.1|WP_116887015.1|5410573_5414614_-|non-ribosomal-peptide-synthetase
MNNLNLSTLGQNEQSLDVIYGPIQHELLREEVLADLLEASARRNPQHVALIFGERQISYGELDRQADQVASALIGTGVRPGHIVGLWLPRGIELLVMQAGIAKAGAAWLPLDQDTPVERLQICLDDASAVGLVSCDALMPVLADTGLKVWTAEHLLTPTDAALVRRSGVLPDHPAYVIYTSGSTGKPKGILISQRSICHFLRSENAILGIRANDRVYQGFSVAFDMSFEEIWIAYLVGATLWIGPKETSGDPETLPRLLNEQRISVLHAVPTLLALFSEDVPGLRLINLGGEMCPESLVDRWATPNRQMFNTYGPTEATVSASLARLSRGRPVSIGTPLPNYGLLVIANDPAVGSSLAPSLLPRGEVGELCIIGPGLAEGYLGRPDLTEEKFLPNPWSTGYHDARLYRTGDLARIDHDGQVQCLGRADDQVKIRGFRVELGEIEALLAQQPGVGTVAVLLRNEAGVDQLIAYLVSDTSTPSAFTSQLRKTLQAQLPPYMVPGHFELLDSMPRLTSGKIDRKALKVLPLTVDAKAASAESDVAQTEGEIALFAALSTLFPGMPIRRDADFFTDLGGHSFFAARLASALRANPRFAQVTVRDIYQHRRIGAIAEVLDQAPQEMDAPVDWTPPSAWRRWRCGVAQALALPVMVSLRMTQWLAPFFTYHLLTGSPDDSVTLATLASISVFLIATVLQFFIALAAKWLIVGRLKPGIYPLWGVTYFRWWAADRMVESAPTYLLSGSSLYPLWLRALGAKIGQDVIIGGATVRAHDLLEIGDGVSVGNGVSFENARVERGQLHLGRIALQDNACVGSYVIMEGNTAVGPWGHLEAQSAMADGREVPAGRIWQGSPARDVGAFDTLGQPARPVTSPARLRAEKLFFAFGVLLIATLFFIPVFPTFFLIDWFDTQNVLPWFEGSGPLGQLARYFLLAFPASAVLIVATVLASAALRWLVFPRLKPGRYEVHSNTYCAKWLISQIQEASLNVLSGIYATVYSPFWYRLLGAKVGRDAEISSAQGVIPEMLTLGDETFIADAVMLGDERIDGGWMTMQPTVVSHRSFVGNGGYIADGTVLPENVLIGVHSCAPHNSKIVDGDTWLGSPPIHLPAREQVSGAPESLTFKPSPLRRLARGLVEGVRIVTPHAVVIAVGYTVMLDLMPLADDERWGAVLAYLAVIGMAYSVGNFLLIVALKWLVMGRYRKRADPMWTPFVWLSEGITSLYEGMAAPNFMRYLRGTPWLPLAFNVLGCKIGRGVYMDTTDITEFDCVSIGADSELNAGACPQTHLFEDRVMKIDHVSIGKRVYMGPRSAVLYSAVVGNDAHLGALTLVMKGEHIPAGSRWAGCPASPDRA

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Crispr_ID: NZ_AP020337_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP020337_7

5689140-5689226

Orphan

Consensus_repeat	Method
GGGCAGAATCAAGAGCGGACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP020337_7

>merge|NZ_AP020337|7|5689140-5689226|CRISPRCasFinder
GGGCAGAATCAAGAGCGGACTTGCGACCAACATCTTCGCGAACAAGTTGGCTCCCACGCCCGGAGGGCAGAATCAGGAGCGGACTTG

>NZ_AP020337|7|7|5689140-5689226|CRISPRCasFinder
GGGCAGAATCAAGAGCGGACTTG	CGACCAACATCTTCGCGAACAAGTTGGCTCCCACGCCCGGA
GGGCAGAATCAGGAGCGGACTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP020337.1\|WP_003397170.1\|5677681_5678626_-\|SdiA-regulated-domain-containing-protein	unknown	unknown	gnl\|CDD\|369154
NZ_AP020337.1\|WP_152092390.1\|5686136_5688524_+\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|376618
NZ_AP020337.1\|WP_024640574.1\|5684736_5684928_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP020337.1\|WP_116886443.1\|5700645_5701725_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_AP020337.1\|WP_104684644.1\|5692241_5693336_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_AP020337.1\|WP_024642508.1\|5699969_5700614_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP020337.1\|WP_116886447.1\|5689248_5690130_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NZ_AP020337.1\|WP_003420191.1\|5683926_5684685_+\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|378261
NZ_AP020337.1\|WP_003413528.1\|5698134_5699511_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_AP020337.1\|WP_024640575.1\|5684924_5685866_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_AP020337.1\|WP_162886057.1\|5683149_5683785_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NZ_AP020337.1\|WP_116886446.1\|5694748_5696113_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_AP020337.1\|WP_024640641.1\|5691043_5692186_-\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_AP020337.1\|WP_162886633.1\|5679553_5680948_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|223354
NZ_AP020337.1\|WP_002555767.1\|5696181_5697540_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_AP020337.1\|WP_002555754.1\|5681108_5682338_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_AP020337.1\|WP_003372160.1\|5690126_5691047_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182646
NZ_AP020337.1\|WP_152092389.1\|5678807_5679473_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|182650
NZ_AP020337.1\|WP_060400258.1\|5693507_5694605_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_AP020337.1\|WP_011269266.1\|5682573_5683011_-\|DUF4399-domain-containing-protein	unknown	unknown	gnl\|CDD\|373020

Protein	Function_ID	Function_description	E-value
NZ_AP020337.1\|WP_003397170.1\|5677681_5678626_-\|SdiA-regulated-domain-containing-protein	gnl\|CDD\|369154	pfam06977, SdiA-regulated, SdiA-regulated. This family represents a conserved region approximately within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators. Some family members contain the pfam01436 repeat.	7.29876e-133
NZ_AP020337.1\|WP_152092390.1\|5686136_5688524_+\|penicillin-acylase-family-protein	gnl\|CDD\|376618	pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase or penicillin acylase EC:3.5.1.11 catalyzes the hydrolysis of benzylpenicillin to phenylacetic acid and 6-aminopenicillanic acid (6-APA) a key intermediate in the the synthesis of penicillins. Also in the family is cephalosporin acylase and aculeacin A acylase which are involved in the synthesis of related peptide antibiotics.	0
NZ_AP020337.1\|WP_104684644.1\|5692241_5693336_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_AP020337.1\|WP_116886443.1\|5700645_5701725_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	1.87529e-30
NZ_AP020337.1\|WP_024642508.1\|5699969_5700614_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.6796e-09
NZ_AP020337.1\|WP_116886447.1\|5689248_5690130_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	8.74925e-118
NZ_AP020337.1\|WP_003420191.1\|5683926_5684685_+\|DUF2059-domain-containing-protein	gnl\|CDD\|378261	pfam09832, DUF2059, Uncharacterized protein conserved in bacteria (DUF2059). This domain, found in various prokaryotic proteins, has no known function.	0.00181793
NZ_AP020337.1\|WP_003413528.1\|5698134_5699511_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.39638e-154
NZ_AP020337.1\|WP_024640575.1\|5684924_5685866_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.54699e-34
NZ_AP020337.1\|WP_162886057.1\|5683149_5683785_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	5.38365e-47
NZ_AP020337.1\|WP_116886446.1\|5694748_5696113_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_AP020337.1\|WP_024640641.1\|5691043_5692186_-\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_AP020337.1\|WP_162886633.1\|5679553_5680948_-\|FAD-binding-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.94429e-125
NZ_AP020337.1\|WP_002555767.1\|5696181_5697540_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.38043e-153
NZ_AP020337.1\|WP_002555754.1\|5681108_5682338_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_AP020337.1\|WP_003372160.1\|5690126_5691047_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	9.92225e-152
NZ_AP020337.1\|WP_152092389.1\|5678807_5679473_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|182650	PRK10691, PRK10691, fumarylacetoacetate hydrolase family protein.	5.40275e-78
NZ_AP020337.1\|WP_060400258.1\|5693507_5694605_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_AP020337.1\|WP_011269266.1\|5682573_5683011_-\|DUF4399-domain-containing-protein	gnl\|CDD\|373020	pfam14347, DUF4399, Domain of unknown function (DUF4399). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 135 and 1079 amino acids in length.	2.62307e-47

>NZ_AP020337.1|WP_152092390.1|5686136_5688524_+|penicillin-acylase-family-protein
MKRSLFILAIIIALLAGGAGWYVNSKLPVRDGEIAMSRLQAPVTLRYDERGVPHIRAENEADLYRALGYAHAQDRLFQMEMLRRLARGELAEVLGPNLLETDKLFRSLRIREHADAYVARQDKNTPTWKALEAYIDGINQYQDTHARPMEFDALGIPRRRFTPEDTVSIAGYLAYSFAAAFRTEPLLTYVRDQLGPEYLKVFDLDWHPDGMLDSKPALADADWKGLNQLAQLSHKALEDAGLPQFEGSNAWVISGSRTQSDKPILAGDPHIRFSVPSVWYEAQLSAPGFELYGHFPALNPFALLGHNMDFGWSLTMFQNDDVDLIAEKTNPDNPNQVWYHGQWVDMKRTEQQIAVKGQAPVTLTLLESPHGPIVNNVMGKNAGQAPIAMWWSFLVSANPVLDGFYEANRADTLDKMRSAAEKIQSPGLNIVWANAKGDIGWWAAAQLPIRPQGVNPTFILDGSTAQADKLGFYPFSANPHEENPARGYIVSANFQPLSPTGMQIPGYYNPAERGQELNRQLSDASVKWDLAASKALQLDTQTDYAPSILRPLIPVLRSVVSDPDELALVERLASWKGDYPVDSVGATLFNQFLFDLTEETFHDELGDAMFETLLSSRVMDAALPRLATDADSPWWNNRNSPHEESRANTVKVAWRASVSHLRSLYGTNPDEWVWGKAHTLTQGHPLGSQKPLDMIFNVGPYAAPGTHEVPNNLSSSIRPAPWPVGYGPSTRRLIDFADPAHSLGINPVGQSGVPFDKHYSDQAKAFVNGEYLPQRFSEKDVAEHTEGVLRLVPGA
>NZ_AP020337.1|WP_024640575.1|5684924_5685866_-|alpha/beta-hydrolase
MSVTFDPDNLRASLLPLSVIDPLSMEGLAYQRFYGLAGLCGENVIRSWLGRLDVAGYEVVGQVWLPDSPVATLFLFHGFYDHMGLYRHVIEWALEQRFAVIACDLPGHGLSSGSRACINDFAEYQLVLQRLLLEAEGLGLPHPWHLCGQSMGGAIVTDHLLHQGADSPAQGEVILLAPLVRPRAWGWSRLSYHLLRPFVNGIARRFTENSNAPAFLPFLMADPLQPLRLPTAWVGALGQWIVRVESAPRSLRSPLIIQGEADMTVDWSHNLAILKDKFSQPQILMLGHARHHLANETPELRARYFDFLKGRLR
>NZ_AP020337.1|WP_024640574.1|5684736_5684928_+|hypothetical-protein
MKDSLALLATGIVMAFFAWLFWSSLGQDAFAVFGALMLVVTAVDNSRLRRQVKALQAGKTEKL
>NZ_AP020337.1|WP_003420191.1|5683926_5684685_+|DUF2059-domain-containing-protein
MRRLFVLLLMFCTSPAWADSYDQLYKSAGWPEQRAHFNDALKAAQQRYSNNLPPAVYQALVNNSNQRFAPQAMDQRASKRLRESLKDPAPSLQFFQSPLGRKIVNAELTATRADQLAKHAQGLPHIEADATRQLLIGHLAQALPAREAGAEVSLAIAGVAADSLSQMIPGLFGGGQAQGMLEGQRERLMAQMSADLNNTLLYVYRDLSDPELEEFSTFAESPEGKAYYQAALAAIRAGLAVGQSASSLNPGQ
>NZ_AP020337.1|WP_162886057.1|5683149_5683785_-|2OG-Fe(II)-oxygenase
MHAMRIPSDHPLLLRIVGDLAANGWSQQNIFLPEALTLELEQECRKRAAEGELEPAAIGKGTALEIREGIRGDRIQWLEPGQVQCCDRYLELMDSLRQALNRGLFLGLEDYESHFALYPPGARYLRHVDRFRDDDRRMVSAVLYLNSAWLPEHGGQLRMYLKDEVAYDVQPAGGCLVVFLSGEIPHEVMPASRDRLSLTGWFRRRGNELFQ
>NZ_AP020337.1|WP_011269266.1|5682573_5683011_-|DUF4399-domain-containing-protein
MKSLFSGTMVAGLLLSASMLASAADIPRTAAPEGAEVYIISPKDGETVTSPFKVQFGLKGMGVAPAGVDVPETGHHHLLIDVKDQPAMNAPLPVSDNIRHFGKGQTETEINLPPGQHTLQLLMGDKGHMPLNPSVESKKITINVK
>NZ_AP020337.1|WP_002555754.1|5681108_5682338_+|phosphoglycerate-dehydrogenase
MSKTSLDKSKIKFLLLEGVHQSAVDVLKAAGYTSIEYHTKSLPEAELKEKIADAHFIGIRSRTQLTEELFDCAKKLVAVGCFCIGTNQVDLNAARERGIAVFNAPYSNTRSVAELVLAEAILLLRGIPEKNASCHRGGWIKSAANSFEIRGKKLGIIGYGSIGTQLSVLAEGLGMQVYFYDTLTKLPLGNATQVSSLNELLGMSDIVTLHVPETSETQWMIGEKEIRAMKKGSILINAARGTVVELDALADAIKDKHLIGAAIDVFPVEPRSNDDIFESPLRGLDNVILTPHIGGSTAEAQANIGLEVAEKLVKYSDNGTSVSSVNFPEVALPAHPGKHRLLHIHENIPGVLSEINKVFAENGINISGQFLQTNEKVGYVVIDVDAEYSDLAQAKLQQIKGTIRSRVLF
>NZ_AP020337.1|WP_162886633.1|5679553_5680948_-|FAD-binding-protein
MTDRVLIDELQTLVDPGKVLTDAGSLETYGKDWTKQFTPAPLAIVFPKTTEQVQAIVRWANERLVALVPSGGRTGLSAAAVAANGEVVVSFDYMNQVLDLNLTDRTAVCQPGVITRQLQALAEDNGLYYPVDFASSGSSQIGGNIGTNAGGIKVIRYGMTRNWVAGLKVVTGRGDLLELNKDLIKNATGYDLRQLFIGAEGTLGFVVEATMRLDRAPKNLTAMVLGTSDFNSIMPVLHAFHGKLDLTAFEFFSDKSFARVMARGDVPSPFDTPCPFYVLLEFEATTEDLADQALATFEHCVEQGWVLDGVMSQSEQQLRNLWKLREYISETISHFTPYKNDISVTVSKVPEFLAEIDAIVAEHYPDFEVLWYGHIGDGNLHLNILKPENLDKDEFFVKCAKVNKWVFETVEKYNGSISAEHGVGMTKRDYLTYSRSPVEIEYMKALKAVFDPNGIMNPGKIFAV
>NZ_AP020337.1|WP_152092389.1|5678807_5679473_-|fumarylacetoacetate-hydrolase-family-protein
MSYQHKYVDGTNIHFPLGKVVCIGRNYAEHAKELGNAVPTEPLLFMKPGSAVVALEGGFSIPADRGSVHYEAEIVVLIGKPLSKNPSREEVLDAISGFAPGLDLTLRDVQSRLREKGLPWELAKCFDGAAVIPPFVPAETFPDLEDIGIRLTLNGKVVQDGNSNMMLNPIVPMIQHMAANFSLQAGDLIMTGTPAGVGPFEAGDQVALELVGQTPFESVVR
>NZ_AP020337.1|WP_003397170.1|5677681_5678626_-|SdiA-regulated-domain-containing-protein
MASTAATPPRTKKRFAYLRNMRWYSWLLVVALLGYGLAFIMHWDDRALLWFQERFESKAGRHASIWLPDYHVDIDAKVLPGMEKDEASDLSYNPVTKTLFAVMGKNAFLVELTLTGDVLRKIPLVGWSNPEGVAVMNDGLIAITDERQHKLTIVKVNADTTTLNIADFPQYELGKSANQNKGFEGIAWDPQRQQLILGEERPPALYTWKSNGSDVLAGDKQPLSSRSLDMRNLSSLSIDPRTGHMLALSADSHMLLEVDDQGEQVSFMTLLGGMNGLKDTIPRAEGVALDEAGTLYMVSEPNLFYSFHRALRKH
>NZ_AP020337.1|WP_116886447.1|5689248_5690130_-|ABC-transporter-permease-subunit
MNRFRFSNLMLVLGLLFIYAPMVILVIYSFNASQLVTVWGGWSVKWYVGLLDNSQLMGSVMRSLEIACYTAVAAVALGTMAAFVLTRISRFKGRTFFGGLVTAPLVMPEVITGLSLLLLFVAMAQLIGWPQERGIMTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFLLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLILLAVSLATFLVWFFTRRAENNRKRAIQQTIEESAADAWKQPDPRRAPAA
>NZ_AP020337.1|WP_003372160.1|5690126_5691047_-|ABC-transporter-permease-subunit
MKIRKIKRAFERIKPNGRQMVIGVPFLWLFLFFALPFLIVLKISFAEADVAIPPYTEIFSYADEKLQMVLNFANYTLLSGDDLYVSAYLGSLKMAFISTLLCLLIGYPMAYAIASARKDLQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNAFLMWLGLIDAPLQILNTNLAVYIGVVYSYLPFMILPLYANLVKHDTSLLEAASDLGSSTFNSFWKITVPLSKNGVIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVIMLLVLIVPIILFNRSQAKELEGKA
>NZ_AP020337.1|WP_024640641.1|5691043_5692186_-|polyamine-ABC-transporter-ATP-binding-protein
MAVASGAYKKALEGGQQPKEVLVKIDRVTKKFDETIAVDDVSLQINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIYLDGVDITDMPPYERPINMMFQSYALFPHMTVADNIAFGLKQDKLGKPEIEARVAEMLKLVQMTQYAKRKPHQLSGGQRQRVALARSLAKKPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGWIAQIGSPIDIYETPTSRLVCEFIGSVNLFEGDVIEDMEAHALIRSPELERNIYVGHGVSTSVEDKHITYALRPEKLLITTEQPGFEYNWSRGKVHDIAYLGGHSVFYVELPGGKLVQSFVANAERQGARPTWGDEVYVWWEDDSGVVLRS
>NZ_AP020337.1|WP_104684644.1|5692241_5693336_-|polyamine-ABC-transporter-substrate-binding-protein
MSISILSKALLAAAGLTLTLGAQAKSTVHIYNWSDYIGKTTLTDFEATTGIKPMYDVFDSNETLEAKLLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLPNYKNLDPALLKRLEKNDPGNQYAVPYLWGTNGIGYNVEKVKAVLGVDKIDSWAVLFEPENIKKLSSCGVAFLDSADEMLPAVLNYLGLDPNSTKEADYKKAEAKLMAIRPYVTYFHSSKYITDLANGDICVAAGFSGDVFQAKARAEEAGKGVKLAYSIPKEGGNLWFDMLAIPADSKNIKEASAFINYMLDPRVIAKVSDEVGYANPNPASGEFMDQKIRTDAAVYPPQEVLDRLFVNSELPPKVQRLMTRSWTKVKSGK
>NZ_AP020337.1|WP_060400258.1|5693507_5694605_-|polyamine-ABC-transporter-substrate-binding-protein
MKKFGKTLLALSLMGVVATAAQADDKVLHVYNWSDYIAPDTVAKFEKESGIKVVYDVFDSNETLEAKLLAGKSGYDVVVPSNNFLAKQIKAGVYQELDKSKLPNWKNLNESLLKAVSVSDPDNKYAFPYMWGSIGIGINPDKVKAALGADAPVNSWDLLFKPENAAKLKSCGISFLDSPTEMLPIALHYLDYPTDSQDKKQLAKAEELFMTIRPSIGYFHSSKYISDLANGNICVAVGYSGDIYQAKSRAAEAGGKVKVAYNIPKKGAGSFYDMVAIPKDAQNVEGAYKFMNFLMRPEVMAEITNAVRFPNGNAAATALVDKEITSDPGVYPPADVQAKLYAIADLPAATQRIMTRSWTKIKSGE
>NZ_AP020337.1|WP_116886446.1|5694748_5696113_-|aspartate-aminotransferase-family-protein
MSANNPQTLEWQALSSEHHLAPFSDYKQLKEKGPRIITRAEGVYLWDSEGNKILDGMSGLWCVAIGYGREELADAASKQMRELPYYNLFFQTAHPPVLELAKAISDIAPEGMNHVFFTGSGSEGNDTMLRMVRHYWALKGQPNKKTIISRVNGYHGSTVAGASLGGMTYMHEQGDLPIPGVVHIPQPYWFGEGGDMTPDEFGIWAAEQLEKKILELGVENVGAFIAEPIQGAGGVIVPPDSYWPKIKEILSRYDILFAADEVICGFGRTSEWFGSDFYGLRPDMMTIAKGLTSGYAPMGGLIVRDEIVAVLNEGGDFNHGFTYSGHPVAAAVALENIRILREEKIVERVRSETAPYLQKRLRELSDHPLVGEVRGVGLLGAIELVKDKTTRERYTDKGAGMICRTFCFDNGLIMRAVGDTMIIAPPLVISFAQIDELVEKARKCLDLTLAVLQG
>NZ_AP020337.1|WP_002555767.1|5696181_5697540_-|glutamine-synthetase
MSTNLDQLTDWLKEHKITEVECMMSDLTGITRGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYELLDPADIDMICRPDQNAVYLVPWAVEPTAQVIHDTYDKQGNPIELSPRNVLKKVLKLYADQGWQPIVAPEMEFYLTKRSDDPDYPLQPPIGRSGRPETGRQSFSIEAANEFDPLFEDVYDWCELQNLDLDTLIHEDGTAQMEINFRHGDALSLADQILVFKRTMREAALKHDVAATFMAKPMTGEPGSAMHLHQSIIDIETGKNIFSNEDGTMSELFLNHVGGLQKFIPELLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDAVPQNRRVENRLPGADANPYLAIAASLLCGFIGMVEGINPSAPVVGRGYERRNLRLPLTIEDALERMENSKTIEKYLGKKFIIGYVAVKRAEHENFKRVISSWEREFLLFAV
>NZ_AP020337.1|WP_003413528.1|5698134_5699511_+|glutamine-synthetase
MSVPPRAVQLNEANAFLKEHPEVLYVDLLIADMNGVVRGKRIERTSLHKVYEKGINLPASLFALDINGSTVESTGLGLDIGDADRICYPIPDTLCNEPWQKRPTAQLLMTMHELEGDPFFADPREVLRQVVAKFDEMGLTICAAFELEFYLIDQENVNGRPQPPRSPISGKRPHSTQVYLIDDLDEYVDCLQDILEGAKEQGIPADAIVKESAPAQFEVNLHHVADAIKACDYAVLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISILDRDGKNIFTSEDPEQNAALRHAIGGVLETLPAQMAFLCPNVNSYRRFGAQFYVPNSPTWGLDNRTVAVRVPTGTADAVRIEHRVAGADANPYLVMASVLAGVHHGLVNKVEPGAPVEGNSYEQHEQSLPNNLRDALRELDDNPVMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_AP020337.1|WP_024642508.1|5699969_5700614_+|TetR/AcrR-family-transcriptional-regulator
MTRAATPRKPQARSQARIDSILDAARTLLAEQGVASLSIYSVAERAGIPPSSVYHFFASVPALLEALTADIHAAFRASLQAPIDHDQLTTWRDLSRIVELRMLAIYNADAAARQLILAQHGLTEINQADRQHDIELGHLMLEVFDRHFQLPALPDDVDVFALAMELGDRVYARSVQLHDEITPRMAEEGMRVFDAYLGLYLPVFLVKRKISPLQ
>NZ_AP020337.1|WP_116886443.1|5700645_5701725_-|RHS-repeat-associated-core-domain-containing-protein
MASLDPIMLCTYRYDALDRLASSSPVGRADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRHVDGVVDTTLLATDQQRSVLRLVDEAGIEPVAYSPYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPIGFVDPSGHAPYNRLLRRALENARLKSPSRKDRISTRLLRVLGKRSEAPPSREGKPLPISPLASTSAASSPPPSTTSTLQAPDKGRPAMTTPAMTWEYRVKKAEEFHHPVSTAVPTDFEVAKIYLERHLKRLLDVENTILFYKSNRAVDTGNFIEAGPSQFYKAILLRDINAFKVYAAGMSRKHRKAIRKQR

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Crispr_ID: NZ_AP020337_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP020337_8

5699596-5699671

Orphan

Consensus_repeat	Method
TCGTTCCTCACGCTCCAGCGTGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP020337_8

>merge|NZ_AP020337|8|5699596-5699671|CRISPRCasFinder
TCGTTCCTCACGCTCCAGCGTGGGAGCGATAATCATATGGCCGCACGCTTATCGTTCCGCACGCTCCAGCGTGGGA

>NZ_AP020337|8|8|5699596-5699671|CRISPRCasFinder
TCGTTCCTCACGCTCCAGCGTGGGA	GCGATAATCATATGGCCGCACGCTTA
TCGTTCCGCACGCTCCAGCGTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP020337.1\|WP_003318285.1\|5708740_5709379_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239314
NZ_AP020337.1\|WP_103754874.1\|5705613_5706426_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183055
NZ_AP020337.1\|WP_152092390.1\|5686136_5688524_+\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|376618
NZ_AP020337.1\|WP_116886446.1\|5694748_5696113_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_AP020337.1\|WP_024650881.1\|5703696_5705004_-\|delta-60-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379933
NZ_AP020337.1\|WP_024642508.1\|5699969_5700614_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP020337.1\|WP_103754873.1\|5707248_5708214_-\|sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270275
NZ_AP020337.1\|WP_116886447.1\|5689248_5690130_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NZ_AP020337.1\|WP_003413528.1\|5698134_5699511_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_AP020337.1\|WP_024640575.1\|5684924_5685866_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_AP020337.1\|WP_002555770.1\|5705371_5705587_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|226113
NZ_AP020337.1\|WP_116886443.1\|5700645_5701725_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_AP020337.1\|WP_024640641.1\|5691043_5692186_-\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_AP020337.1\|WP_004407339.1\|5706422_5707220_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	unknown	unknown	gnl\|CDD\|183100
NZ_AP020337.1\|WP_103754872.1\|5708327_5708606_-\|DUF1534-domain-containing-protein	unknown	unknown	gnl\|CDD\|148905
NZ_AP020337.1\|WP_002555767.1\|5696181_5697540_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_AP020337.1\|WP_003372160.1\|5690126_5691047_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182646
NZ_AP020337.1\|WP_116886442.1\|5701953_5703033_-\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_AP020337.1\|WP_060400258.1\|5693507_5694605_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_AP020337.1\|WP_104684644.1\|5692241_5693336_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377

Protein	Function_ID	Function_description	E-value
NZ_AP020337.1\|WP_003318285.1\|5708740_5709379_-\|peroxiredoxin	gnl\|CDD\|239314	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins.	6.31398e-131
NZ_AP020337.1\|WP_103754874.1\|5705613_5706426_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	5.8093e-171
NZ_AP020337.1\|WP_152092390.1\|5686136_5688524_+\|penicillin-acylase-family-protein	gnl\|CDD\|376618	pfam01804, Penicil_amidase, Penicillin amidase. Penicillin amidase or penicillin acylase EC:3.5.1.11 catalyzes the hydrolysis of benzylpenicillin to phenylacetic acid and 6-aminopenicillanic acid (6-APA) a key intermediate in the the synthesis of penicillins. Also in the family is cephalosporin acylase and aculeacin A acylase which are involved in the synthesis of related peptide antibiotics.	0
NZ_AP020337.1\|WP_116886446.1\|5694748_5696113_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_AP020337.1\|WP_024650881.1\|5703696_5705004_-\|delta-60-repeat-domain-containing-protein	gnl\|CDD\|379933	pfam17164, DUF5122, Domain of unknown function (DUF5122) beta-propeller.	0.000980375
NZ_AP020337.1\|WP_024642508.1\|5699969_5700614_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.6796e-09
NZ_AP020337.1\|WP_103754873.1\|5707248_5708214_-\|sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270275	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the sulfonate binding domains SsuA found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.74958e-145
NZ_AP020337.1\|WP_116886447.1\|5689248_5690130_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	8.74925e-118
NZ_AP020337.1\|WP_003413528.1\|5698134_5699511_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.39638e-154
NZ_AP020337.1\|WP_024640575.1\|5684924_5685866_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.54699e-34
NZ_AP020337.1\|WP_002555770.1\|5705371_5705587_-\|TOBE-domain-containing-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	1.14695e-16
NZ_AP020337.1\|WP_116886443.1\|5700645_5701725_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	1.87529e-30
NZ_AP020337.1\|WP_024640641.1\|5691043_5692186_-\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_AP020337.1\|WP_004407339.1\|5706422_5707220_-\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	1.60766e-137
NZ_AP020337.1\|WP_103754872.1\|5708327_5708606_-\|DUF1534-domain-containing-protein	gnl\|CDD\|148905	pfam07551, DUF1534, Protein of unknown function (DUF1534). This family is found in a group of small bacterial proteins. Its function is not known.	2.52228e-10
NZ_AP020337.1\|WP_002555767.1\|5696181_5697540_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.38043e-153
NZ_AP020337.1\|WP_003372160.1\|5690126_5691047_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	9.92225e-152
NZ_AP020337.1\|WP_116886442.1\|5701953_5703033_-\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	6.15789e-30
NZ_AP020337.1\|WP_060400258.1\|5693507_5694605_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_AP020337.1\|WP_104684644.1\|5692241_5693336_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0

>NZ_AP020337.1|WP_003413528.1|5698134_5699511_+|glutamine-synthetase
MSVPPRAVQLNEANAFLKEHPEVLYVDLLIADMNGVVRGKRIERTSLHKVYEKGINLPASLFALDINGSTVESTGLGLDIGDADRICYPIPDTLCNEPWQKRPTAQLLMTMHELEGDPFFADPREVLRQVVAKFDEMGLTICAAFELEFYLIDQENVNGRPQPPRSPISGKRPHSTQVYLIDDLDEYVDCLQDILEGAKEQGIPADAIVKESAPAQFEVNLHHVADAIKACDYAVLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISILDRDGKNIFTSEDPEQNAALRHAIGGVLETLPAQMAFLCPNVNSYRRFGAQFYVPNSPTWGLDNRTVAVRVPTGTADAVRIEHRVAGADANPYLVMASVLAGVHHGLVNKVEPGAPVEGNSYEQHEQSLPNNLRDALRELDDNPVMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_AP020337.1|WP_002555767.1|5696181_5697540_-|glutamine-synthetase
MSTNLDQLTDWLKEHKITEVECMMSDLTGITRGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYELLDPADIDMICRPDQNAVYLVPWAVEPTAQVIHDTYDKQGNPIELSPRNVLKKVLKLYADQGWQPIVAPEMEFYLTKRSDDPDYPLQPPIGRSGRPETGRQSFSIEAANEFDPLFEDVYDWCELQNLDLDTLIHEDGTAQMEINFRHGDALSLADQILVFKRTMREAALKHDVAATFMAKPMTGEPGSAMHLHQSIIDIETGKNIFSNEDGTMSELFLNHVGGLQKFIPELLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDAVPQNRRVENRLPGADANPYLAIAASLLCGFIGMVEGINPSAPVVGRGYERRNLRLPLTIEDALERMENSKTIEKYLGKKFIIGYVAVKRAEHENFKRVISSWEREFLLFAV
>NZ_AP020337.1|WP_116886446.1|5694748_5696113_-|aspartate-aminotransferase-family-protein
MSANNPQTLEWQALSSEHHLAPFSDYKQLKEKGPRIITRAEGVYLWDSEGNKILDGMSGLWCVAIGYGREELADAASKQMRELPYYNLFFQTAHPPVLELAKAISDIAPEGMNHVFFTGSGSEGNDTMLRMVRHYWALKGQPNKKTIISRVNGYHGSTVAGASLGGMTYMHEQGDLPIPGVVHIPQPYWFGEGGDMTPDEFGIWAAEQLEKKILELGVENVGAFIAEPIQGAGGVIVPPDSYWPKIKEILSRYDILFAADEVICGFGRTSEWFGSDFYGLRPDMMTIAKGLTSGYAPMGGLIVRDEIVAVLNEGGDFNHGFTYSGHPVAAAVALENIRILREEKIVERVRSETAPYLQKRLRELSDHPLVGEVRGVGLLGAIELVKDKTTRERYTDKGAGMICRTFCFDNGLIMRAVGDTMIIAPPLVISFAQIDELVEKARKCLDLTLAVLQG
>NZ_AP020337.1|WP_060400258.1|5693507_5694605_-|polyamine-ABC-transporter-substrate-binding-protein
MKKFGKTLLALSLMGVVATAAQADDKVLHVYNWSDYIAPDTVAKFEKESGIKVVYDVFDSNETLEAKLLAGKSGYDVVVPSNNFLAKQIKAGVYQELDKSKLPNWKNLNESLLKAVSVSDPDNKYAFPYMWGSIGIGINPDKVKAALGADAPVNSWDLLFKPENAAKLKSCGISFLDSPTEMLPIALHYLDYPTDSQDKKQLAKAEELFMTIRPSIGYFHSSKYISDLANGNICVAVGYSGDIYQAKSRAAEAGGKVKVAYNIPKKGAGSFYDMVAIPKDAQNVEGAYKFMNFLMRPEVMAEITNAVRFPNGNAAATALVDKEITSDPGVYPPADVQAKLYAIADLPAATQRIMTRSWTKIKSGE
>NZ_AP020337.1|WP_104684644.1|5692241_5693336_-|polyamine-ABC-transporter-substrate-binding-protein
MSISILSKALLAAAGLTLTLGAQAKSTVHIYNWSDYIGKTTLTDFEATTGIKPMYDVFDSNETLEAKLLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLPNYKNLDPALLKRLEKNDPGNQYAVPYLWGTNGIGYNVEKVKAVLGVDKIDSWAVLFEPENIKKLSSCGVAFLDSADEMLPAVLNYLGLDPNSTKEADYKKAEAKLMAIRPYVTYFHSSKYITDLANGDICVAAGFSGDVFQAKARAEEAGKGVKLAYSIPKEGGNLWFDMLAIPADSKNIKEASAFINYMLDPRVIAKVSDEVGYANPNPASGEFMDQKIRTDAAVYPPQEVLDRLFVNSELPPKVQRLMTRSWTKVKSGK
>NZ_AP020337.1|WP_024640641.1|5691043_5692186_-|polyamine-ABC-transporter-ATP-binding-protein
MAVASGAYKKALEGGQQPKEVLVKIDRVTKKFDETIAVDDVSLQINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIYLDGVDITDMPPYERPINMMFQSYALFPHMTVADNIAFGLKQDKLGKPEIEARVAEMLKLVQMTQYAKRKPHQLSGGQRQRVALARSLAKKPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGWIAQIGSPIDIYETPTSRLVCEFIGSVNLFEGDVIEDMEAHALIRSPELERNIYVGHGVSTSVEDKHITYALRPEKLLITTEQPGFEYNWSRGKVHDIAYLGGHSVFYVELPGGKLVQSFVANAERQGARPTWGDEVYVWWEDDSGVVLRS
>NZ_AP020337.1|WP_003372160.1|5690126_5691047_-|ABC-transporter-permease-subunit
MKIRKIKRAFERIKPNGRQMVIGVPFLWLFLFFALPFLIVLKISFAEADVAIPPYTEIFSYADEKLQMVLNFANYTLLSGDDLYVSAYLGSLKMAFISTLLCLLIGYPMAYAIASARKDLQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNAFLMWLGLIDAPLQILNTNLAVYIGVVYSYLPFMILPLYANLVKHDTSLLEAASDLGSSTFNSFWKITVPLSKNGVIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVIMLLVLIVPIILFNRSQAKELEGKA
>NZ_AP020337.1|WP_116886447.1|5689248_5690130_-|ABC-transporter-permease-subunit
MNRFRFSNLMLVLGLLFIYAPMVILVIYSFNASQLVTVWGGWSVKWYVGLLDNSQLMGSVMRSLEIACYTAVAAVALGTMAAFVLTRISRFKGRTFFGGLVTAPLVMPEVITGLSLLLLFVAMAQLIGWPQERGIMTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFLLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLILLAVSLATFLVWFFTRRAENNRKRAIQQTIEESAADAWKQPDPRRAPAA
>NZ_AP020337.1|WP_152092390.1|5686136_5688524_+|penicillin-acylase-family-protein
MKRSLFILAIIIALLAGGAGWYVNSKLPVRDGEIAMSRLQAPVTLRYDERGVPHIRAENEADLYRALGYAHAQDRLFQMEMLRRLARGELAEVLGPNLLETDKLFRSLRIREHADAYVARQDKNTPTWKALEAYIDGINQYQDTHARPMEFDALGIPRRRFTPEDTVSIAGYLAYSFAAAFRTEPLLTYVRDQLGPEYLKVFDLDWHPDGMLDSKPALADADWKGLNQLAQLSHKALEDAGLPQFEGSNAWVISGSRTQSDKPILAGDPHIRFSVPSVWYEAQLSAPGFELYGHFPALNPFALLGHNMDFGWSLTMFQNDDVDLIAEKTNPDNPNQVWYHGQWVDMKRTEQQIAVKGQAPVTLTLLESPHGPIVNNVMGKNAGQAPIAMWWSFLVSANPVLDGFYEANRADTLDKMRSAAEKIQSPGLNIVWANAKGDIGWWAAAQLPIRPQGVNPTFILDGSTAQADKLGFYPFSANPHEENPARGYIVSANFQPLSPTGMQIPGYYNPAERGQELNRQLSDASVKWDLAASKALQLDTQTDYAPSILRPLIPVLRSVVSDPDELALVERLASWKGDYPVDSVGATLFNQFLFDLTEETFHDELGDAMFETLLSSRVMDAALPRLATDADSPWWNNRNSPHEESRANTVKVAWRASVSHLRSLYGTNPDEWVWGKAHTLTQGHPLGSQKPLDMIFNVGPYAAPGTHEVPNNLSSSIRPAPWPVGYGPSTRRLIDFADPAHSLGINPVGQSGVPFDKHYSDQAKAFVNGEYLPQRFSEKDVAEHTEGVLRLVPGA
>NZ_AP020337.1|WP_024640575.1|5684924_5685866_-|alpha/beta-hydrolase
MSVTFDPDNLRASLLPLSVIDPLSMEGLAYQRFYGLAGLCGENVIRSWLGRLDVAGYEVVGQVWLPDSPVATLFLFHGFYDHMGLYRHVIEWALEQRFAVIACDLPGHGLSSGSRACINDFAEYQLVLQRLLLEAEGLGLPHPWHLCGQSMGGAIVTDHLLHQGADSPAQGEVILLAPLVRPRAWGWSRLSYHLLRPFVNGIARRFTENSNAPAFLPFLMADPLQPLRLPTAWVGALGQWIVRVESAPRSLRSPLIIQGEADMTVDWSHNLAILKDKFSQPQILMLGHARHHLANETPELRARYFDFLKGRLR
>NZ_AP020337.1|WP_024642508.1|5699969_5700614_+|TetR/AcrR-family-transcriptional-regulator
MTRAATPRKPQARSQARIDSILDAARTLLAEQGVASLSIYSVAERAGIPPSSVYHFFASVPALLEALTADIHAAFRASLQAPIDHDQLTTWRDLSRIVELRMLAIYNADAAARQLILAQHGLTEINQADRQHDIELGHLMLEVFDRHFQLPALPDDVDVFALAMELGDRVYARSVQLHDEITPRMAEEGMRVFDAYLGLYLPVFLVKRKISPLQ
>NZ_AP020337.1|WP_116886443.1|5700645_5701725_-|RHS-repeat-associated-core-domain-containing-protein
MASLDPIMLCTYRYDALDRLASSSPVGRADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRHVDGVVDTTLLATDQQRSVLRLVDEAGIEPVAYSPYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPIGFVDPSGHAPYNRLLRRALENARLKSPSRKDRISTRLLRVLGKRSEAPPSREGKPLPISPLASTSAASSPPPSTTSTLQAPDKGRPAMTTPAMTWEYRVKKAEEFHHPVSTAVPTDFEVAKIYLERHLKRLLDVENTILFYKSNRAVDTGNFIEAGPSQFYKAILLRDINAFKVYAAGMSRKHRKAIRKQR
>NZ_AP020337.1|WP_116886442.1|5701953_5703033_-|RHS-repeat-associated-core-domain-containing-protein
MTSPNQTVLCKYRYDPLDRLASSSPAGQADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRRVEGAIETTLLATDQQRSVLRLVDKFGVEPVAYSAYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPVGVVDPSGHMPFSILIQAADMIEKFGPQAATLIAQRALQGVSPAARVLGGKHTPAAVPSLVSKKASKLPSASASTSTSSAKSVSRRRLTEQRRMLELKRKNLINELSTRLPIDESSAKRRYERFEGRVRDAEYLIKHYTENPERVKHSIINPSQSRELFGAKLVNAETNFNAYRKKYIEKFGEYVRDPPKDK
>NZ_AP020337.1|WP_024650881.1|5703696_5705004_-|delta-60-repeat-domain-containing-protein
MMKSTSKAGGIEYEFQAPFRAPRDMGHQTKILALDSGMRYLTDLEHSSSRVFLSRLSNDGTPDLSFAPDGYRTESVEMAFDGLEPGLVVRKDGGVVAALCNDNELGLVCFKTDGTLDPDFGTDGIIVHSYWAVGITQRSGQLDDVDSDDKSAPSGKDVAGARGTIAPGMDGRIYGLIGGRTSSPDAVIRCLGNGELDAGFNETGTLPITYTTYDAVVSGVVPTPDGGIAVTGRLRGAVFVSCYKEDGSLNVQFGEGGFAIFGPEHFGYTDEEILQLEFNHIAVLPGGGFIVSGYLSAINPTLTYGLLVAVDSTGKLAQSFNNGKPVMFELAPREVDFIFGGVVLQADGKILVGGGLTARNPTYRRDVFVIRYLQTGELDLSFAGRGWVQFSPFGNVVSYLNSISIDKDQKILLAGDGGPDNNLSSMTGFVMQLAS
>NZ_AP020337.1|WP_002555770.1|5705371_5705587_-|TOBE-domain-containing-protein
MTIKAINVRNQFKGTIKEIVHGDVLSEIDVQTASGVVTSVITTRSVKELELVVGSEVIAFVKSTEVSIAKL
>NZ_AP020337.1|WP_103754874.1|5705613_5706426_-|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein
MTSLKQQPPHLLRGIPLAVRKLKKAFGAREVLKDIDLHIPAGQFVAIVGRSGCGKSTLLRLLAGLDKPTQGQLLAGSAPLDDAREDTRLMFQEARLLPWKKIIDNVGLGLSGDWRAQALEALEAVGLAERANEWPAALSGGQKQRVALARALIHKPRLLLLDEPLGALDALTRIEMQQLIEKLWGQYGFTVLLVTHDVSEAVAIAERVILIEEGQIGLDLLVDLPRPRVRGSHRLAALEAEVLNRVLALPGSPPDPEPFSPLPTQLRWAN
>NZ_AP020337.1|WP_004407339.1|5706422_5707220_-|aliphatic-sulfonate-ABC-transporter-permease-SsuC
MSLSASQRIVHRLAPWALPVLLLAVWQLSVSAGWLSTRILPAPSAVIEAGINLVASGEIWTHLAISGWRAGIGFAIGGGIGLALGFITGLSKWGERLLDSSVQMIRNVPHLALIPLVILWFGIDETAKIFLVALGTLFPIYLNTYHGIRNIDPALVEMSRSYGLSGFSLFRHVILPGAMPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAIVLYAVLGKLADLAARGLERVCLRWHPAYQTSKGGAA
>NZ_AP020337.1|WP_103754873.1|5707248_5708214_-|sulfonate-ABC-transporter-substrate-binding-protein
MRTVILRRGLVALFAAAVALGAVTQAQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQGVKVQWTEFPGGPQLLEGLNVGSIDFGVTGETPPVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKGKKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPPADARAAFERGSVDAWVIWDPYQAAAEKQLQARTLKDGTGIVDNHQFYLATKPYAQKNPKVIQALVEEVRAVGEWSKANPDEVTRQVAPLLGLPADITLTSVKRQGYGAQFLTPTVVAAQQKIADTFYQLKLIPKPLSIADVVWTPPAAVAQAQ
>NZ_AP020337.1|WP_103754872.1|5708327_5708606_-|DUF1534-domain-containing-protein
MGTIVTGLSFLTLQRGNACRDALRHKSSSRCRIRIGRGASRTGIPTRSMGTIVTGLSFLTLQRGNACRDAPRHRLPTYKHEHFYIFIYGITK
>NZ_AP020337.1|WP_003318285.1|5708740_5709379_-|peroxiredoxin
MTLRLGDIAPDFEQESSEGRIRFHEWLGDSWGVLFSHPADFTPVCTTELGFTAKLKDEFAKRGVKAIALSVDPVDSHIKWIDDINTTQNTLVNFPILADADRKVSDLYDLIHPNANDTLTVRSLFVIDPNKKVRLTITYPASTGRNFHEILRVIDSLQLTDNYKVATPANWVDGDDVVIVPSIKDEAEIKQRFPKGYKAVTPYLRLTPQPNR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP020337_1	1.1\|489615\|52\|NZ_AP020337\|CRISPRCasFinder	489615-489666	52	NZ_AP020337.1	489821-489872	2	0.962

1. spacer 1.1|489615|52|NZ_AP020337|CRISPRCasFinder matches to position: 489821-489872, mismatch: 2, identity: 0.962

caggagcgaccggggcggcgacccgctttgttcgcgaaggctcgtcatgcag	CRISPR spacer
caggagcgaccggggcggcgatccgccttgttcgcgaaggctcgtcatgcag	Protospacer
*********************.****.*************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1055206 : 1061968

Pseudomonas_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152091866.1\|1055206_1055539_-	hypothetical protein	A0A222YZ97	Escherichia_phage	8.3e-18	45.5
WP_152091867.1\|1055741_1056344_-	hypothetical protein	A0A1B0VMK2	Pseudomonas_phage	5.6e-73	65.8
WP_152091868.1\|1056340_1056649_-	hypothetical protein	A0A1B0VML7	Pseudomonas_phage	1.9e-21	53.8
WP_152091869.1\|1056988_1059205_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	2.0e-301	87.1
WP_152091870.1\|1059201_1059486_-	hypothetical protein	A0A1B0VMJ4	Pseudomonas_phage	5.8e-28	71.8
WP_152091871.1\|1059533_1059863_-	hypothetical protein	NA	NA	NA	NA
WP_152091872.1\|1059859_1060192_-	hypothetical protein	NA	NA	NA	NA
WP_152091873.1\|1060188_1060398_-	hypothetical protein	NA	NA	NA	NA
WP_152091874.1\|1060394_1060700_-	hypothetical protein	NA	NA	NA	NA
WP_152091876.1\|1061314_1061968_-	KilA-N domain-containing protein	K7PGT4	Enterobacteria_phage	2.6e-39	65.7

DBSCAN-SWA_2

3668195 : 3675938

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011268262.1\|3668195_3669497_-	MFS transporter	Q6JIH2	Burkholderia_virus	4.1e-60	36.0
WP_011268263.1\|3669731_3670124_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.7e-57	82.3
WP_024642107.1\|3670125_3670488_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.3e-36	60.8
WP_024642108.1\|3670487_3670787_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.2e-29	62.6
WP_003317943.1\|3670783_3671119_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.2e-43	78.4
WP_024639668.1\|3671115_3672117_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	8.8e-164	84.2
WP_103714642.1\|3672213_3673212_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003405073.1\|3673262_3674657_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003317946.1\|3674657_3675938_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	45.8

DBSCAN-SWA_3

5318823 : 5353148

Pseudomonas_phage(62.96%)

plate,tail,tRNA,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024639964.1\|5318823_5320035_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_103754712.1\|5320236_5321664_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	4.2e-18	44.7
WP_003401948.1\|5321667_5322762_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002551953.1\|5322824_5323175_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
WP_011269099.1\|5323418_5324453_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003316309.1\|5324586_5325015_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_057457394.1\|5325100_5326015_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_103754714.1\|5326071_5326848_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003316306.1\|5326951_5327290_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003401955.1\|5327411_5328059_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003316303.1\|5328128_5328923_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003401957.1\|5329165_5329588_-	OsmC family protein	NA	NA	NA	NA
WP_003401959.1\|5329789_5330434_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_024640874.1\|5330445_5331141_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_011269105.1\|5331175_5332012_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.0e-68	56.2
WP_024640873.1\|5332008_5333058_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.2e-110	57.7
WP_003394873.1\|5333079_5333679_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.0e-74	64.7
WP_172980079.1\|5334090_5334603_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	4.7e-28	48.4
WP_057457391.1\|5334599_5335145_-	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.0e-69	73.3
WP_024639973.1\|5335375_5335873_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_024639975.1\|5336227_5336794_-\|tail	tail fiber assembly protein	B5TK80	Pseudomonas_phage	1.5e-43	46.4
WP_024639976.1\|5336801_5338265_-	hypothetical protein	B5TK79	Pseudomonas_phage	1.7e-86	40.9
WP_010439013.1\|5338275_5338875_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	3.7e-85	72.4
WP_003401993.1\|5338862_5339903_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	5.4e-132	70.1
WP_003316288.1\|5339892_5340291_-	phage GP46 family protein	B5TK74	Pseudomonas_phage	3.4e-42	62.9
WP_003372720.1\|5340287_5340800_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	1.4e-64	73.8
WP_003401994.1\|5340796_5341924_-	hypothetical protein	B5TK72	Pseudomonas_phage	2.7e-113	60.2
WP_024652215.1\|5341927_5343340_-	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	1.1e-108	45.7
WP_152092333.1\|5343336_5345496_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	8.5e-71	40.0
WP_116830836.1\|5345495_5345702_-	hypothetical protein	NA	NA	NA	NA
WP_003316280.1\|5345626_5345923_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	4.3e-34	76.0
WP_003316279.1\|5345919_5346267_-\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	8.6e-42	70.4
WP_003422754.1\|5346327_5347824_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	2.2e-235	80.7
WP_003401999.1\|5347842_5348031_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	1.8e-14	73.5
WP_011269116.1\|5348027_5348618_-	hypothetical protein	B5TK65	Pseudomonas_phage	2.4e-52	52.6
WP_011269117.1\|5348663_5349002_-	lipoprotein	A0A059VJW1	Pseudomonas_phage	1.2e-19	59.2
WP_003411734.1\|5348982_5349372_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
WP_024639983.1\|5349494_5350667_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_003402007.1\|5350678_5350864_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	8.4e-12	84.2
WP_024661078.1\|5351136_5351580_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	1.0e-23	45.1
WP_024639984.1\|5351769_5352381_+	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	2.0e-49	49.2
WP_024639985.1\|5352535_5352784_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003316268.1\|5352905_5353148_+	pyocin activator PrtN family protein	A0A2H4J8B4	uncultured_Caudovirales_phage	1.9e-16	51.2

DBSCAN-SWA_4

5463760 : 5496522

Bacteriophage(33.33%)

protease,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011269184.1\|5463760_5464219_-\|transposase	transposase	NA	NA	NA	NA
WP_003402189.1\|5464345_5465449_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_011269185.1\|5466232_5467180_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_170846044.1\|5467244_5468093_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_011269186.1\|5468089_5469268_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-25	36.4
WP_152092348.1\|5469526_5470780_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.7e-101	54.0
WP_024640218.1\|5470797_5472048_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA
WP_003316160.1\|5472063_5472360_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
WP_003402200.1\|5472356_5475377_+	sarcosine oxidase subunit alpha	NA	NA	NA	NA
WP_003402202.1\|5475427_5476060_+	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA
WP_152092349.1\|5476265_5477123_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_003316157.1\|5477231_5478431_+	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	2.2e-12	27.7
WP_103378574.1\|5478462_5479509_-	RHS repeat-associated core domain-containing protein	A0A1W5K0N1	Bacteriophage	4.7e-27	42.3
WP_152092350.1\|5479618_5485444_-	hypothetical protein	NA	NA	NA	NA
WP_003402209.1\|5485668_5486232_+	DUF2780 domain-containing protein	NA	NA	NA	NA
WP_111522398.1\|5486211_5487279_-	RHS repeat-associated core domain-containing protein	B6SD27	Bacteriophage	2.6e-28	38.3
WP_152092351.1\|5487329_5488223_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_003402218.1\|5488416_5488920_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_172980112.1\|5489560_5489863_-	DUF1534 domain-containing protein	NA	NA	NA	NA
WP_154686163.1\|5490309_5490531_-	DUF1534 domain-containing protein	NA	NA	NA	NA
WP_152092459.1\|5490608_5490944_-	DUF1534 domain-containing protein	NA	NA	NA	NA
WP_024638082.1\|5490940_5491570_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003402221.1\|5491639_5491822_-	hypothetical protein	NA	NA	NA	NA
WP_152092353.1\|5491818_5492952_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_152092354.1\|5493073_5494057_-	FecR domain-containing protein	NA	NA	NA	NA
WP_152092355.1\|5494053_5494572_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_003402225.1\|5494815_5496522_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.9e-49	29.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP020337

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection