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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP021845 Azospira sp. I09 plasmid pAZI09, complete sequence 4 crisprs PD-DExK,DinG,csf5gr6,csf1gr8,csf2gr7,csf3gr5 0 7 2 0
NZ_AP021844 Azospira sp. I09 0 crisprs DEDDh,DinG,WYL,RT,csa3 0 0 3 0

Results visualization

1. NZ_AP021845
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP021845_1 11331-11433 TypeIV-A NA
1 spacers
csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG,PD-DExK

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP021845_2 11530-11698 TypeIV-A NA
2 spacers
csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG,PD-DExK

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP021845_3 12193-12294 TypeIV-A NA
1 spacers
csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG,PD-DExK

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP021845_4 307466-307630 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP021845_1 1.1|11367|30|NZ_AP021845|CRISPRCasFinder 11367-11396 30 NZ_AP021845 Azospira sp. I09 plasmid pAZI09, complete sequence 11367-11396 0 1.0
NZ_AP021845_2 2.1|11566|30|NZ_AP021845|CRISPRCasFinder 11566-11595 30 NZ_AP021845 Azospira sp. I09 plasmid pAZI09, complete sequence 11566-11595 0 1.0
NZ_AP021845_2 2.2|11632|30|NZ_AP021845|CRISPRCasFinder 11632-11661 30 NZ_AP021845 Azospira sp. I09 plasmid pAZI09, complete sequence 11632-11661 0 1.0
NZ_AP021845_3 3.1|12229|30|NZ_AP021845|CRISPRCasFinder 12229-12258 30 NZ_AP021845 Azospira sp. I09 plasmid pAZI09, complete sequence 12229-12258 0 1.0
NZ_AP021845_4 4.1|307483|31|NZ_AP021845|PILER-CR 307483-307513 31 NZ_AP021845 Azospira sp. I09 plasmid pAZI09, complete sequence 307483-307513 0 1.0
NZ_AP021845_4 4.2|307531|43|NZ_AP021845|PILER-CR 307531-307573 43 NZ_AP021845 Azospira sp. I09 plasmid pAZI09, complete sequence 307531-307573 0 1.0
NZ_AP021845_4 4.3|307591|23|NZ_AP021845|PILER-CR 307591-307613 23 NZ_AP021845 Azospira sp. I09 plasmid pAZI09, complete sequence 307591-307613 0 1.0
NZ_AP021845_2 2.1|11566|30|NZ_AP021845|CRISPRCasFinder 11566-11595 30 NC_018141 Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence 116661-116690 6 0.8
NZ_AP021845_2 2.1|11566|30|NZ_AP021845|CRISPRCasFinder 11566-11595 30 NZ_CP025492 Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence 38691-38720 6 0.8
NZ_AP021845_2 2.1|11566|30|NZ_AP021845|CRISPRCasFinder 11566-11595 30 NZ_CP021284 Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence 109995-110024 6 0.8
NZ_AP021845_2 2.1|11566|30|NZ_AP021845|CRISPRCasFinder 11566-11595 30 NZ_CP011106 Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence 106875-106904 6 0.8
NZ_AP021845_2 2.1|11566|30|NZ_AP021845|CRISPRCasFinder 11566-11595 30 NZ_CP045305 Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence 37393-37422 6 0.8
NZ_AP021845_2 2.1|11566|30|NZ_AP021845|CRISPRCasFinder 11566-11595 30 NZ_CP042253 Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence 39581-39610 6 0.8
NZ_AP021845_2 2.2|11632|30|NZ_AP021845|CRISPRCasFinder 11632-11661 30 KM389300 UNVERIFIED: Escherichia phage CBA6 clone ctg7180000000096 genomic sequence 16175-16204 7 0.767
NZ_AP021845_2 2.2|11632|30|NZ_AP021845|CRISPRCasFinder 11632-11661 30 KC139562 Salmonella phage FSL SP-029 hypothetical protein gene, partial cds; hypothetical proteins, RIIA protector from prophage-induced early lysis, RIIB Protector from prophage-induced early lysis, and hypothetical proteins genes, complete cds; and DNA topoisomerase 2 gene, partial cds 2138-2167 7 0.767
NZ_AP021845_2 2.2|11632|30|NZ_AP021845|CRISPRCasFinder 11632-11661 30 KC139523 Salmonella phage FSL SP-063 hypothetical protein genes, complete cds; tRNA-Met, tRNA-Trp, tRNA-Asn, tRNA-OTHER, tRNA-Ser, and tRNA-OTHER genes, complete sequence; and hypothetical proteins, DNA polymerase, hypothetical proteins, RIIA protector from prophage-induced early lysis, RIIB Protector from prophage-induced early lysis, hypothetical proteins, putative tail fibre, hypothetical proteins, DNA topoisomerase IIs, hypothetical proteins, exonuclease A, hypothetical proteins, deoxycytidylate deaminase, hypothetical proteins, head completion protein, putative tail tube associated base plate protein, baseplate wedge subunit, hypothetical proteins, loader of T4-like helicase, hypothetical proteins, putative membrane protein, DNA ligase, hypothetical proteins, helicase, hypothetical protein, RecA-like recombination protein, hypothetical protein, putative dUTP diphosphatase, hypothetical protein, thymidylate synthase, hypothetical proteins, DNA end protector protein, baseplate tail tube, single-stranded DNA binding protein, hypothetical proteins, regulatory protein FmdB, hypothetical proteins, and base plate hub subunit genes, complete cds 20576-20605 7 0.767
NZ_AP021845_2 2.2|11632|30|NZ_AP021845|CRISPRCasFinder 11632-11661 30 FQ312032 Salmonella phage Vi01 complete sequence 154723-154752 7 0.767
NZ_AP021845_2 2.2|11632|30|NZ_AP021845|CRISPRCasFinder 11632-11661 30 NC_015296 Salmonella phage Vi01, complete genome 154723-154752 7 0.767
NZ_AP021845_2 2.2|11632|30|NZ_AP021845|CRISPRCasFinder 11632-11661 30 NC_023856 Salmonella phage vB_SalM_SJ2, complete genome 80074-80103 7 0.767
NZ_AP021845_2 2.2|11632|30|NZ_AP021845|CRISPRCasFinder 11632-11661 30 MH427377 Escherichia phage vB_EcoM Sa157lw, complete genome 129521-129550 7 0.767
NZ_AP021845_4 4.1|307483|31|NZ_AP021845|PILER-CR 307483-307513 31 NZ_CP012399 Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence 220195-220225 7 0.774
NZ_AP021845_4 4.1|307483|31|NZ_AP021845|PILER-CR 307483-307513 31 NZ_CP018096 Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence 197951-197981 7 0.774

1. spacer 1.1|11367|30|NZ_AP021845|CRISPRCasFinder matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

atctcaacccgctctaggattcggctgact	CRISPR spacer
atctcaacccgctctaggattcggctgact	Protospacer
******************************

2. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

ctgatattgacaaggccttggcagttgtcg	CRISPR spacer
ctgatattgacaaggccttggcagttgtcg	Protospacer
******************************

3. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

gtcaggagtatcagccagacaatgaacttg	CRISPR spacer
gtcaggagtatcagccagacaatgaacttg	Protospacer
******************************

4. spacer 3.1|12229|30|NZ_AP021845|CRISPRCasFinder matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

gaatatcggttctgcggtcgcagattggcc	CRISPR spacer
gaatatcggttctgcggtcgcagattggcc	Protospacer
******************************

5. spacer 4.1|307483|31|NZ_AP021845|PILER-CR matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

aaacacgctgacggggagggaggcgcatggg	CRISPR spacer
aaacacgctgacggggagggaggcgcatggg	Protospacer
*******************************

6. spacer 4.2|307531|43|NZ_AP021845|PILER-CR matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgagcaccaaggggtgatgcgagaggagggctgtgcgga	CRISPR spacer
ttgccgagcaccaaggggtgatgcgagaggagggctgtgcgga	Protospacer
*******************************************

7. spacer 4.3|307591|23|NZ_AP021845|PILER-CR matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

tcgctgacatccctggaatccga	CRISPR spacer
tcgctgacatccctggaatccga	Protospacer
***********************

8. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NC_018141 (Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.   

9. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_CP025492 (Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.   

10. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_CP021284 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.   

11. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_CP011106 (Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.   

12. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_CP045305 (Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.   

13. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_CP042253 (Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.   

14. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to KM389300 (UNVERIFIED: Escherichia phage CBA6 clone ctg7180000000096 genomic sequence) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

15. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to KC139562 (Salmonella phage FSL SP-029 hypothetical protein gene, partial cds; hypothetical proteins, RIIA protector from prophage-induced early lysis, RIIB Protector from prophage-induced early lysis, and hypothetical proteins genes, complete cds; and DNA topoisomerase 2 gene, partial cds) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

16. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to KC139523 (Salmonella phage FSL SP-063 hypothetical protein genes, complete cds; tRNA-Met, tRNA-Trp, tRNA-Asn, tRNA-OTHER, tRNA-Ser, and tRNA-OTHER genes, complete sequence; and hypothetical proteins, DNA polymerase, hypothetical proteins, RIIA protector from prophage-induced early lysis, RIIB Protector from prophage-induced early lysis, hypothetical proteins, putative tail fibre, hypothetical proteins, DNA topoisomerase IIs, hypothetical proteins, exonuclease A, hypothetical proteins, deoxycytidylate deaminase, hypothetical proteins, head completion protein, putative tail tube associated base plate protein, baseplate wedge subunit, hypothetical proteins, loader of T4-like helicase, hypothetical proteins, putative membrane protein, DNA ligase, hypothetical proteins, helicase, hypothetical protein, RecA-like recombination protein, hypothetical protein, putative dUTP diphosphatase, hypothetical protein, thymidylate synthase, hypothetical proteins, DNA end protector protein, baseplate tail tube, single-stranded DNA binding protein, hypothetical proteins, regulatory protein FmdB, hypothetical proteins, and base plate hub subunit genes, complete cds) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

17. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to FQ312032 (Salmonella phage Vi01 complete sequence) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

18. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to NC_015296 (Salmonella phage Vi01, complete genome) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

19. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to NC_023856 (Salmonella phage vB_SalM_SJ2, complete genome) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

20. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to MH427377 (Escherichia phage vB_EcoM Sa157lw, complete genome) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

21. spacer 4.1|307483|31|NZ_AP021845|PILER-CR matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 7, identity: 0.774

aaacacgctgacggggagggaggcgcatggg	CRISPR spacer
gatcgcgctgacgggacgggaggcgcatacg	Protospacer
.* *.**********. ***********. *

22. spacer 4.1|307483|31|NZ_AP021845|PILER-CR matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 7, identity: 0.774

aaacacgctgacggggagggaggcgcatggg	CRISPR spacer
gatcgcgctgacgggacgggaggcgcatacg	Protospacer
.* *.**********. ***********. *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 72042 : 78469 10 Ruegeria_phage(33.33%) NA NA
DBSCAN-SWA_2 219800 : 230598 13 Mycobacterium_phage(22.22%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_AP021844
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1397060 : 1410067 14 Prochlorococcus_phage(20.0%) tRNA NA
DBSCAN-SWA_2 2569244 : 2576915 7 Synechococcus_phage(16.67%) NA NA
DBSCAN-SWA_3 2967016 : 3023959 53 Bacillus_phage(28.57%) protease,transposase,integrase attL 2991252:2991270|attR 3028742:3028760
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage