CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP045066	Enterobacter roggenkampii strain WCHER090065 plasmid p1_090065, complete sequence	0 crisprs	NA	0	0
NZ_CP045064	Enterobacter roggenkampii strain WCHER090065 chromosome, complete genome	3 crisprs	cas3,DinG,DEDDh,RT,WYL,csa3	1	13
NZ_CP045065	Enterobacter roggenkampii strain WCHER090065 plasmid pMCR10_090065, complete sequence	0 crisprs	RT	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045064_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045064_1

2546011-2546084

Orphan

Consensus_repeat	Method
CGCACCTGTAGGCCGGGTAAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045064_1

>merge|NZ_CP045064|1|2546011-2546084|CRISPRCasFinder
CGCACCTGTAGGCCGGGTAAGGCGAAGCCGCCACCCGGCAACGCGAACACCGCACCTTGTAGGCCGGGTAAGGC

>NZ_CP045064|1|1|2546011-2546084|CRISPRCasFinder
CGCACCTGTAGGCCGGGTAAGGC	GAAGCCGCCACCCGGCAACGCGAACACC
GCACCTTGTAGGCCGGGTAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045064.2\|WP_006177354.1\|2545209_2545965_+\|phosphonate-C-P-lyase-system-protein-PhnK	unknown	unknown	gnl\|CDD\|183280
NZ_CP045064.2\|WP_058654186.1\|2544367_2545213_+\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	unknown	unknown	gnl\|CDD\|226154
NZ_CP045064.2\|WP_023293503.1\|2554882_2555878_+\|ribose-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226633
NZ_CP045064.2\|WP_058654188.1\|2550907_2553184_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP045064.2\|WP_058654182.1\|2540751_2541531_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP045064.2\|WP_008500066.1\|2538206_2538647_+\|VOC-family-metalloprotein-YjdN	unknown	unknown	gnl\|CDD\|236656
NZ_CP045064.2\|WP_045407285.1\|2542277_2542730_+\|phosphonate-C-P-lyase-system-protein-PhnG	unknown	unknown	gnl\|CDD\|226151
NZ_CP045064.2\|WP_021242924.1\|2548475_2548910_+\|aminoalkylphosphonate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182266
NZ_CP045064.2\|WP_058654187.1\|2548919_2549678_+\|phosphonate-metabolism-protein-PhnP	unknown	unknown	gnl\|CDD\|183052
NZ_CP045064.2\|WP_058654183.1\|2541551_2542277_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	unknown	unknown	gnl\|CDD\|182227
NZ_CP045064.2\|WP_058654185.1\|2543310_2544375_+\|carbon-phosphorus-lyase-complex-subunit-PhnI	unknown	unknown	gnl\|CDD\|226153
NZ_CP045064.2\|WP_031275336.1\|2547931_2548483_+\|ribose-1,5-bisphosphokinase	unknown	unknown	gnl\|CDD\|236648
NZ_CP045064.2\|WP_008500049.1\|2550159_2550786_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP045064.2\|WP_032664718.1\|2546121_2546802_+\|phosphonate-C-P-lyase-system-protein-PhnL	unknown	unknown	gnl\|CDD\|227118
NZ_CP045064.2\|WP_058654184.1\|2542726_2543311_+\|phosphonate-C-P-lyase-system-protein-PhnH	unknown	unknown	gnl\|CDD\|236655
NZ_CP045064.2\|WP_058654181.1\|2539632_2540649_+\|phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270293
NZ_CP045064.2\|WP_032664717.1\|2546798_2547935_+\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|237967
NZ_CP045064.2\|WP_021242933.1\|2553365_2554886_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP045064.2\|WP_023618659.1\|2538819_2539608_+\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182182
NZ_CP045064.2\|WP_021242926.1\|2549760_2550084_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171

Protein	Function_ID	Function_description	E-value
NZ_CP045064.2\|WP_006177354.1\|2545209_2545965_+\|phosphonate-C-P-lyase-system-protein-PhnK	gnl\|CDD\|183280	PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional.	0
NZ_CP045064.2\|WP_058654186.1\|2544367_2545213_+\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	gnl\|CDD\|226154	COG3627, PhnJ, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0
NZ_CP045064.2\|WP_023293503.1\|2554882_2555878_+\|ribose-ABC-transporter-permease	gnl\|CDD\|226633	COG4158, COG4158, Predicted ABC-type sugar transport system, permease component [General function prediction only].	5.52594e-171
NZ_CP045064.2\|WP_058654188.1\|2550907_2553184_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	8.99417e-96
NZ_CP045064.2\|WP_058654182.1\|2540751_2541531_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	9.73376e-101
NZ_CP045064.2\|WP_008500066.1\|2538206_2538647_+\|VOC-family-metalloprotein-YjdN	gnl\|CDD\|236656	PRK10148, PRK10148, VOC family metalloprotein YjdN.	1.81362e-99
NZ_CP045064.2\|WP_045407285.1\|2542277_2542730_+\|phosphonate-C-P-lyase-system-protein-PhnG	gnl\|CDD\|226151	COG3624, PhnG, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	1.06058e-64
NZ_CP045064.2\|WP_021242924.1\|2548475_2548910_+\|aminoalkylphosphonate-N-acetyltransferase	gnl\|CDD\|182266	PRK10146, PRK10146, aminoalkylphosphonate N-acetyltransferase.	4.76962e-96
NZ_CP045064.2\|WP_058654187.1\|2548919_2549678_+\|phosphonate-metabolism-protein-PhnP	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	3.36142e-164
NZ_CP045064.2\|WP_058654183.1\|2541551_2542277_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	gnl\|CDD\|182227	PRK10079, PRK10079, phosphonate metabolism transcriptional regulator PhnF; Provisional.	1.12962e-171
NZ_CP045064.2\|WP_058654185.1\|2543310_2544375_+\|carbon-phosphorus-lyase-complex-subunit-PhnI	gnl\|CDD\|226153	COG3626, PhnI, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0
NZ_CP045064.2\|WP_031275336.1\|2547931_2548483_+\|ribose-1,5-bisphosphokinase	gnl\|CDD\|236648	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.	1.71576e-121
NZ_CP045064.2\|WP_008500049.1\|2550159_2550786_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.00466155
NZ_CP045064.2\|WP_032664718.1\|2546121_2546802_+\|phosphonate-C-P-lyase-system-protein-PhnL	gnl\|CDD\|227118	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.087e-147
NZ_CP045064.2\|WP_058654184.1\|2542726_2543311_+\|phosphonate-C-P-lyase-system-protein-PhnH	gnl\|CDD\|236655	PRK10147, phnH, phosphonate C-P lyase system protein PhnH.	4.14869e-96
NZ_CP045064.2\|WP_058654181.1\|2539632_2540649_+\|phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270293	cd13575, PBP2_PnhD, Substrate binding domain of ABC-type phosphonate uptake system; contains the type 2 periplasmic binding fold. This subfamily includes the Escherichia coli PhnD (EcPhnD) which exhibits high affinity for the environmentally abundant 2-aminoethylphosphonate (2-AEP), a precursor in the biosynthesis of phosphonolipids, phosphonoproteins, and phosphonoglycans. The Escherichia coli phn operon encodes 14 genes involved in binding, uptake and metabolism of phosphonate, and is activated under phophophate-limiting conditions. PhnD belongs to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. The PBP2 have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. PhnD is the periplasmic binding component of an ABC-type phosphonate uptake system (PhnCDE) that recognizes and binds phosphonate.	2.44752e-159
NZ_CP045064.2\|WP_032664717.1\|2546798_2547935_+\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	gnl\|CDD\|237967	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional.	0
NZ_CP045064.2\|WP_021242933.1\|2553365_2554886_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP045064.2\|WP_023618659.1\|2538819_2539608_+\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182182	PRK09984, PRK09984, phosphonate ABC transporter ATP-binding protein.	0
NZ_CP045064.2\|WP_021242926.1\|2549760_2550084_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.00200616

>NZ_CP045064.2|WP_006177354.1|2545209_2545965_+|phosphonate-C-P-lyase-system-protein-PhnK
MKPLLSVNNLTHLYAPGKGFSDVSFELWPGEVLGIVGESGSGKTTLLKSISARLTPQNGDILYEGASLYGMSEAERRRLLRTEWGVVHQHPMDGLRRQVSAGGNIGERLMATGARHYGNIRATAQHWLEEVEIPASRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTDRVLDDPHHPYTQLLVSSVLQN
>NZ_CP045064.2|WP_058654186.1|2544367_2545213_+|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ
MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQITASVIGEADVLKVIDQGADDTTNAVSIRTFFQRVTGVATTEKTEDATLIQTRHRIPETPLTEDQILIFQVPISEPLRFIEPRETETRTMHALEEYGVMQVKLYEDIARFGHIATTYAYPVKVNGRYVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPPYTRVESLDFDDHPFTVQEWDEPCAICGSKHSYLDEVVLDDTGKRMFVCSDTDFCRQQSEANGQ
>NZ_CP045064.2|WP_058654185.1|2543310_2544375_+|carbon-phosphorus-lyase-complex-subunit-PhnI
MYVAVKGGEKAIAAAHALQAHRRRGDEQLPELSVAQIEQQLNLAVDRVMTEGGIADRELAALALKQASGDNVEAIFLLRAYRTTLAKLAVSEPINTAQMRLERRISAVYKDIPGGQRLGPTYDYTHRLLDFTLLANGEAPRLSTSDAEQEPSPHVFSLLAKQGLAKAEEDSGAQPDDITRTPPVYPCSRSSRLQQLMRGDEGYLLALAYSTQRGYGRNHPFAAEIRSGYIDVEIVPEELGFAVNVGALLMTECEMVNGFVAPENEDPHFTRGYGLVFGLCERKAMAMALVDRALQAPDYGEHVAGPAQDEEFVLAHADNVEAAGFVSHLKLPHYVDFQAELELLKRLQRERKHG
>NZ_CP045064.2|WP_058654184.1|2542726_2543311_+|phosphonate-C-P-lyase-system-protein-PhnH
MTLQPAFTLAVQDAQHSFRRLLKAMSEPGVIVSLHQLSQGWLPLNLATTSVLLTLADNDTPVWLSGALSNDIANQNLRFHTGSPLVEQPQQAIFAVADEQISHEQLNALSEGTAVAPETSATLILQVASLSGGRMLRLTGAGIADERMVAPQLPGCIIHELTERPHPFPLGIDLILTCGERLLAIPRTTHVEVC
>NZ_CP045064.2|WP_045407285.1|2542277_2542730_+|phosphonate-C-P-lyase-system-protein-PhnG
MHFDTATRQRWMRVLAHSQPAALSARMNALSLAPGYDLLRAPEIGLVQIQARMGGTGARFFAGDATLTRAAIRLHSGTLGYGYVLGRDKAHAERCAVIDALLQEPPHFQTLMETLISPLEADRAARLAARQAEVNTSRVDFFTLVRGDNA
>NZ_CP045064.2|WP_058654183.1|2541551_2542277_+|phosphonate-metabolism-transcriptional-regulator-PhnF
MHLSRHPTSFPTRWQEIAAKLEVELRTHYRCGDYLPAEQQLADRYEVNRHTLRRAIDQLVERGWVQRRQGVGVLVLMRPFDYPLNVQARFSQNLLDQGSHPTSEKLLSVLRPASSHVADALGIQEGDNVIHLRTLRRVNGVAVCQIDHYFADLTLWPVLQNFSSGSLHDFLQNATGIALKRTQTRISARRAQAKESKVLEIPNMAPLLCVRTLNHRDGEIDATEYSVSLTRADMIEFTMEH
>NZ_CP045064.2|WP_058654182.1|2540751_2541531_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MQTITLPPPKRSWFSLISWAILLAVLVISWKGAEMDPLLLFKDAGNMATFAADFFPPDFSQWQDYLSEMAVTLQIAVWGTALAVILSIPFGLISAENIVPWWIYQPMRRLMDACRAINEMVFAMLFVVAVGLGPFAGVMALFIHTTGVLSKLLSEAVEAIEPGPVEGIRATGANKIEEILYGVLPQVMPLLISYSLYRFESNVRSATVVGMVGAGGIGVTLWEAIRGFQFQQTCALMVLIIVTVSLLDFLSQRLRKHFI
>NZ_CP045064.2|WP_058654181.1|2539632_2540649_+|phosphonate-ABC-transporter-substrate-binding-protein
MSYKAVAALAFTSMFSLSTLLSPAYAEEQEKALNFGIISTESQQNLKPQWEPFLKDMETKLGIKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVEADGSPGYWSVLIVNKDSPINNLNDMLAKRKELTFGNGDPNSTSGYLVPGYYVFAKNNASASDFKRTVNASHETNALAVANKQVDVATNNTENLDKLKTSAPDKLKELKVIWKSPLIPGDPIVWRKNLSESTKDKVYDFFMTYGKTPEEKAVLERLGWAPFRPSSDLQLVPIRQLALFKEMQGVKDNKGLKDEEKTSKVAAIQAQLEDLDRLTAALGAMTSVNKAVQ
>NZ_CP045064.2|WP_023618659.1|2538819_2539608_+|phosphonate-ABC-transporter-ATP-binding-protein
MQTVIRVEKLSKTFNHNKALHAVDLTVRQGDMVALLGPSGSGKSTLLRHLSGLITGDKTPESHVELLGNTVQRAGRLASDIRKSRAQTGYIFQQFNLVNRLTVLENVLIGALGSTPFWRTCLRWFTPSQKQEALQALTRVGMAHFAHQRVSTLSGGQQQRVAIARALMQKAQIILADEPIASLDPESARIVMETLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFFDGASHQFDNERFDHLYRSINRVEENAQAA
>NZ_CP045064.2|WP_008500066.1|2538206_2538647_+|VOC-family-metalloprotein-YjdN
MPLSPYISFAGNCAEATAFYQQAVGAELLYKITFGEMPKSDNSEEGCPSGMQFPDSAIAHSNVRIAGSDIMMSDGMPPGSNAQYAGFTLVLDTQDVSEGKRWFDNLAAGGNIDMAWQETFWAHGFGKVTDQYGVPWMINVVKQQTS
>NZ_CP045064.2|WP_032664718.1|2546121_2546802_+|phosphonate-C-P-lyase-system-protein-PhnL
MIHVQNVSKTFVLHQQNGVRLPVLQNASLEVNRGECVVLHGHSGSGKSTLLRSLYANYLPDEGHIHIRHGDEWIDLVQAPARKVLEVRRSTIGWVSQFLRVIPRISALDVVMQPLLDLGVPRETCAAKAASLLTRLNVPERLWHLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLDVKNSAAVVELIEQAKARGAAIVGIFHDESVRTRVADRLHPMGTPA
>NZ_CP045064.2|WP_032664717.1|2546798_2547935_+|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase
MIINNVKLILDNEVVDGSIEIQDGTIRAFAETQSRSPEAMDGDGGWLLPGLIELHTDNLDKFFTPRPKVDWPAHSAMSSHDALMVASGITTVLDAVAIGDVRDGGDRLENLEKMINAVEETQKRGLNRAEHRLHLRCELPHHTTLPLFEKLVGREPVSLVSLMDHSPGQRQFANIEKYREYYQGKYSLSDAEMARYEEEQLALAARWSQPNRVRIAAMCRDRNIALASHDDATHDHVLESHQLGSVIAEFPTTFEAAEASRKHGMNVLMGAPNIVRGGSHSGNVAASKLASLGLLDILSSDYYPASLLDAAFRVADDEGNRFTLPQAIRLVTKNPASALNLQDRGEIAEGKRADLVLAHRRGEHVHIDHVWRQGKRVF
>NZ_CP045064.2|WP_031275336.1|2547931_2548483_+|ribose-1,5-bisphosphokinase
MMGRLIWLMGPSGSGKDSLLSALRQQEHPQLLVAHRYITRAANAGSENHIALSEQEFFTRAGQNLLALSWHANGYYYGIGIETDLWLHAGFDVLVNGSRAHLSQARARYGAALLPVCLQVSPDVLRSRLQSRGRESAREIDQRLARAARYTPSDCHILNNDGSLLQSVETFLSLIRQKEKQHA
>NZ_CP045064.2|WP_021242924.1|2548475_2548910_+|aminoalkylphosphonate-N-acetyltransferase
MPDCTLRPATADDAQIVYALICELKQAEFDHQAFHAGYLANLQDHNMRYQLAELDGQVIGMIGLHMQFHLHHARWIGEIQELVVMPQARGLKVGSQLLAWAEGVAREAGAELTELSTSVKRTDAHRFYVREGYTQSHFRFTKPL
>NZ_CP045064.2|WP_058654187.1|2548919_2549678_+|phosphonate-metabolism-protein-PhnP
MSLTITLTGTGSAQLVPVFGCDCAACRRARLQDNYRRRPCSAVVKFNDAVTLLDAGIPHLMDDWAAGSFQQFLLTHYHMDHVQGLFPLRWGVGATIPVYGPPEEVGCDDLFKHPGILDFSHTVEPFVMFELQGMRVTPLPLNHSKLTFGYLLESAHSRVAWLSDTAGLPEKTVKFLLNNQPQTMIIDCSHEPRDETPRNHCDLNTVIALNEVIGCPQVILTHISHQFDVWMMDNPLPDGIEAGYDGMVLVLD
>NZ_CP045064.2|WP_021242926.1|2549760_2550084_-|hypothetical-protein
MKRYSTALLFGLLSLTSQLAHADIVDDAIGNIQQAINDAYNPSSSRSNDDDDRYDDNRRMDSRQYDDRRRQLEDRRRRLDERQRQLDDDRRRLEEDERRLEDDYDRG
>NZ_CP045064.2|WP_008500049.1|2550159_2550786_-|GNAT-family-N-acetyltransferase
MIVMPTTYSPSTIARSFKLVDEFELSGRVLHVIFDSQTPRAAIIEADIETFDGVPRHRVVAALDLQRKTHLGEDIIAVERCWEDANVIQVEGICVDPAERDKGLATRLYEALVLQCGVTLVSDFEQYEGGKMLWQKIARESDQIAVFVLDTEQGAFWPYDGSKVIYDGGCIPEDRIWSHSPDQKCYGIVLVAENKQRANQLMEVPGHN
>NZ_CP045064.2|WP_058654188.1|2550907_2553184_-|response-regulator
MPSRPPFFASARGRLLIFNLLVVAVTLMVSGVAVLGFRHASQIQEQVQQQTLDDMTGSMNLARDTASVATAAVRLSQVVGALEYKGEADRLKQTQMALRRSLEQLAEAPLAQQEPALVARIIQRSNELQQSVTEMLERGQRRHLERNALLSSLYQSQSYLRHLQDINRRYDSNVPDAQQLMEMDRLIAAAIDTPSPRATVQQLDAVAATLPRSAAQPVVKAVLPDFNAELGQLAPLSKQLEESDLAISWYMFHIKALVAILNSDINQYVEQVAQASRLRTAQSHHELQSISVCITIFAVLALIITGCACWYIYRHLASNLTAISRAMSRLAHGEQDVSVPALQRRDELGELARAFNVFARNTASLEHTTRLLKEKTTQMEIDRIERQGLEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTDPESNDAPRITRALKAAERGALLTQRLLAFSRKQSLTPHAVEMQPLLENLRELLRHSLPATLTLEIEAQSPAWPAWIDVSQLENAIINLVMNARDAMEGQSGVIKIRTWNQRVTRSDGRRQDMVALEVIDRGCGMSQEVKSRVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLHLPRSTLPVVPEDETLSATASVDNERLVLVLEDEADVRQTLCEQLHQLGYLTLEAENGEQALSMLAASPDIGMFISDLMLPGSLSGAEVISHVRSHYPQLPVLLISGQDLRPTHNPQLPDVQLLRKPFTRVQLAQALRKVCF
>NZ_CP045064.2|WP_021242933.1|2553365_2554886_+|sugar-ABC-transporter-ATP-binding-protein
MSRTPVLEMRSIAKTFGSFHALKGVDLTVFAGEIHALMGENGAGKSTLMKILAGAYTATGGEILIDGQPFHIKGPKDALAAGITLIYQEMQLAPNLTVAENIFLGSELSRGGLVQRKEMAAQAQAVIDRLGAQFSATDLVMKLTIAEQQQVEIARALHRNSRILVMDEPTAALSSRETHRLFELILRLRDEGMAIIYISHRMAEVYELSDRVSVLRDGQYVGSLTRDKLNASELVKMMVGRPLSDLFNKERDIPLGSPRLNVHHLTDGKKVQPCSLQVRSGEIVGLAGLVGAGRSELAQLIFGVRKATGGMIEVDGEPVVIHSPRAAIENGIGFLTENRKEQGLFLELAAQENITMATLERDATFGWLNRKKAQSISDDAIALLNIRVPHSQVRAGGLSGGNQQKLLISRWVAIGPRILILDEPTRGVDVGAKSEIYRIMNQMARKGVAILMISSELPEVVGMSDRVYVMREGSIAGELHGRDISQENIMTLATGVNDTHHQAVQS
>NZ_CP045064.2|WP_023293503.1|2554882_2555878_+|ribose-ABC-transporter-permease
MTTPTQPQQVAKSASAKKMLMSDLMQTVGILPILILIVAVFGFIAPNFFTESNLLNITRQASINIVLAAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLIPEFAGLSIPAALMLGMVLGLFNGALVAFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNINFEWIGNNYLGPIPWLVAIALAVIVVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGTGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTRHHQSA

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Crispr_ID: NZ_CP045064_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045064_2

3366561-3366637

Orphan

Consensus_repeat	Method
GGGTTCGGATACCGAACTCAGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045064_2

>merge|NZ_CP045064|2|3366561-3366637|CRISPRCasFinder
GGGTTCGGATACCGAACTCAGTCATAAACGGCCAGGAATCGTCGCTAAAAAACAGGGTTCGGATACCGAACTCAGTC

>NZ_CP045064|2|2|3366561-3366637|CRISPRCasFinder
GGGTTCGGATACCGAACTCAGTC	ATAAACGGCCAGGAATCGTCGCTAAAAAACA
GGGTTCGGATACCGAACTCAGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045064.2\|WP_110212570.1\|3368806_3370816_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NZ_CP045064.2\|WP_016807972.1\|3372584_3372827_+\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NZ_CP045064.2\|WP_032636742.1\|3360327_3361203_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP045064.2\|WP_032636756.1\|3368236_3368791_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045064.2\|WP_126287353.1\|3367180_3367441_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045064.2\|WP_034951183.1\|3373857_3374616_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236892
NZ_CP045064.2\|WP_032636760.1\|3371451_3371922_+\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NZ_CP045064.2\|WP_032636754.1\|3367509_3368235_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|378089
NZ_CP045064.2\|WP_020899225.1\|3364975_3365563_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP045064.2\|WP_032636750.1\|3365559_3365808_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045064.2\|WP_008503472.1\|3353965_3354520_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|223735
NZ_CP045064.2\|WP_008503475.1\|3352349_3352922_+\|L-threonylcarbamoyladenylate-synthase-type-1-TsaC	unknown	unknown	gnl\|CDD\|182603
NZ_CP045064.2\|WP_032636762.1\|3371983_3372520_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236362
NZ_CP045064.2\|WP_126287351.1\|3373195_3373861_+\|pilus-assembly-protein-PilL	unknown	unknown	gnl\|CDD\|163460
NZ_CP045064.2\|WP_004115558.1\|3372810_3373059_+\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NZ_CP045064.2\|WP_110212567.1\|3361195_3362566_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP045064.2\|WP_110212568.1\|3362562_3364263_+\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|213858
NZ_CP045064.2\|WP_008503474.1\|3352926_3353745_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP045064.2\|WP_008503473.1\|3353741_3353990_+\|DUF1488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377825
NZ_CP045064.2\|WP_110212569.1\|3364255_3364966_+\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525

Protein	Function_ID	Function_description	E-value
NZ_CP045064.2\|WP_110212570.1\|3368806_3370816_+\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP045064.2\|WP_016807972.1\|3372584_3372827_+\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	4.19872e-16
NZ_CP045064.2\|WP_032636742.1\|3360327_3361203_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	9.30798e-22
NZ_CP045064.2\|WP_110212569.1\|3364255_3364966_+\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	1.54662e-09
NZ_CP045064.2\|WP_034951183.1\|3373857_3374616_+\|hypothetical-protein	gnl\|CDD\|236892	PRK11281, PRK11281, mechanosensitive channel MscK.	0.00241044
NZ_CP045064.2\|WP_032636760.1\|3371451_3371922_+\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	1.00862e-78
NZ_CP045064.2\|WP_032636754.1\|3367509_3368235_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|378089	pfam08900, DUF1845, Domain of unknown function (DUF1845). This family of proteins are functionally uncharacterized.	7.78474e-102
NZ_CP045064.2\|WP_020899225.1\|3364975_3365563_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	1.307e-77
NZ_CP045064.2\|WP_008503475.1\|3352349_3352922_+\|L-threonylcarbamoyladenylate-synthase-type-1-TsaC	gnl\|CDD\|182603	PRK10634, PRK10634, L-threonylcarbamoyladenylate synthase type 1 TsaC.	2.34395e-144
NZ_CP045064.2\|WP_008503472.1\|3353965_3354520_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|223735	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only].	4.36902e-79
NZ_CP045064.2\|WP_032636762.1\|3371983_3372520_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	5.78763e-91
NZ_CP045064.2\|WP_126287351.1\|3373195_3373861_+\|pilus-assembly-protein-PilL	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	9.66317e-47
NZ_CP045064.2\|WP_004115558.1\|3372810_3373059_+\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	7.40983e-20
NZ_CP045064.2\|WP_110212567.1\|3361195_3362566_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP045064.2\|WP_110212568.1\|3362562_3364263_+\|chromosome-partitioning-protein-ParB	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	9.2729e-148
NZ_CP045064.2\|WP_008503474.1\|3352926_3353745_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	7.67937e-132
NZ_CP045064.2\|WP_008503473.1\|3353741_3353990_+\|DUF1488-domain-containing-protein	gnl\|CDD\|377825	pfam07369, DUF1488, Protein of unknown function (DUF1488). This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.	3.50883e-29

>NZ_CP045064.2|WP_032636750.1|3365559_3365808_+|hypothetical-protein
MKYRMVAPGLRAPHGTPPQCCQKALRQVRHFRQGARNYTRLDEKGCGYYKIDLGPFWRLLSRNEGRTWLLLSHERYNSAIRK
>NZ_CP045064.2|WP_020899225.1|3364975_3365563_+|DUF2857-domain-containing-protein
MNSLSQAANGLLMQLVMDLRSGYLRRCESLGLNREEMQMLQGLSLEELHYLSGSEVSIISVGINHGNLVRMLQQARTEQKRLQRIDRALALGGSIELMANYFGLSSTDVAARRRIAGIDVRPGRGNALGDEENAALWRQWQKSGVEDAESADGLDVMMLAAEQMNVSLTSVWHAVRGWHKTRQPSPARTPVRKTA
>NZ_CP045064.2|WP_110212569.1|3364255_3364966_+|DUF2786-domain-containing-protein
MNNSQRQLRLLNLVRKLLKLGRSNSNAHEAGLALQRAQKLMARYGISELDAGLTSVREASSRTAPSDAEKVPEWMVTLVRGVCHAFGCCAYYSWRQTSAGYRRSVTFYGFSEKPEIAAYAFDVLTRQLKDATNSYLKTQSKRLKLATRRARAEQFRDGWVCGVREVISATDISSEEQQVMSHWLESRSMKTVTTRELKACRGADTARYQGYEAGQNARLHQGVSGRGPAAIGYRQD
>NZ_CP045064.2|WP_110212568.1|3362562_3364263_+|chromosome-partitioning-protein-ParB
MSRKSSNVGAAMLQPGRQSQAAGNISVMPAAEMPMVLTLDQLSPNPDNPRTSRNPRYDDIKTSIRSRGLDTVPKVTRDPDGEPDMYIFSDGGNTRYQILSELWHETGEDRFFRVHVLFKPWPGRLQCVIGHLAENEVRGELSFIEKAQGIHKARSIYEEQMGKTVSLRQLSELLTHEGLPVHYSTVSRMEDALKYLYPWIPDLLESGLGRPQITALLALRHDAERVWDEFCLISDTGDKSFSDVFGQCCGRFNSPELWSLEMFRDEFIGDLLQALPHPELDYDRWMMELDPKERNRRHHFGEPETVAFPAANKPVNADHALHTTGSDESEGVPLPVSSSRPEVSGGAVTPVPGNASSPTETPINEPPRHEVQPDMYGAAPVISGESGYVSGLVTLSDGYGEENGGEEDNGEDGLLSLLTPEPEVVLQDDAPVTNDSIWHVPAYQDDIEHLQNTAFRLAWELGEVLGCEDEILPQRDKDMSAGYVGAGEVCSEAAAFLLGLTGEAPALHPAAGGCGLPELFTGGPGEGEAPALTDEDALKLLRLMRVMRRLRELQRGLTYGEDNSDE
>NZ_CP045064.2|WP_110212567.1|3361195_3362566_+|replicative-DNA-helicase
MSEMMMPCSYEAEQAVLGGLMLDNDRWDEVILQISPEDLFSRPHRMVFRVMAELAGEGLPLDLITITERLENRGDLEQCGGFAYLAEMSKNTPSAANILAYAGVVAEKSRLRQLMTVGNSLLSDVQAPKASSAGILESAEGKLFNIAEQGAMQLNSETGVNEALDKLLTHLESMSASDGLTGTPTGFSELDAMTCGLQPGDLALLAARPSMGKTSLAMAACTAAVGAKPDDHVFVFSLEMPSEQLMMRLLAMEGRVELSRLRSGNMDDEDWARVSAATGRIIEWKNRLIIDDTSYQTPATLRARARRYVRKYGRPSLIMLDYLQLVRSPEQENRTQEIAEISRSLKALGKELGCPVLALSQLNRLVEQRADKRPNNGDLRDSGALEQDADLIMFIYRDEVYNPGTPDAGVAEIIVGKQRQGPTGTVKVKFDGRYTLFSEFQEGSYDFGYRSGRKQA
>NZ_CP045064.2|WP_032636742.1|3360327_3361203_+|ParA-family-protein
MKILPVISPKGGEGKSTFAAYLAGFLADAGLNTLLVDADYSQPTASSIFALEHESPCGLYELLMQMVSDHTQCISQTAIKNLDVIYSNDPDELLPTAMLHAADGRLRLRNILQHPFFNRYDAIIVDSKGATGVMTELSLLSSTGNVMGVVKPILPDVREFIRGSLHMLTRLKTYENYGIRLPDISILVNCIENTLLDREAMDGLAAIINEKHYDASALGNRDVYRLLDTRIEALDIFKLGHVKQQPVHRLEYKTRRKGPAAAVTMHDLACELFPEWQSHFSDVLTREVRHV
>NZ_CP045064.2|WP_008503472.1|3353965_3354520_-|gamma-carbonic-anhydrase-family-protein
MSAVLRPYKDLFPKQGDRVMIDASSVVIGDVRLADDVSIWPLVAIRGDVNYVSIGARTNIQDGSVLHVTHKSSYNPEGNPLIIGEDVTVGHKVMLHGCTVGNRVLVGMGSILLDGVIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLKEAEIEGLKYSANNYVKWKNDYLDQDSQTQP
>NZ_CP045064.2|WP_008503473.1|3353741_3353990_+|DUF1488-domain-containing-protein
MNQAIHFPDRESWDEHKQAVCFPVLVQGMQLTCAIHGETLLHRFGGTDPIAVFCENRWDLEEEASDLIREQQEDDQGWVWLS
>NZ_CP045064.2|WP_008503474.1|3352926_3353745_+|shikimate-dehydrogenase
METYAVFGNPIAHSKSPWIHQQFAEQLQIDHPYGRVLAPVDAFIPTLEAFFAAGGKGANVTVPFKEEAFERADELTERASLAGAVNTLKRLEDGRLLGDNTDGIGLLSDLERLSFIKPGFRVLLIGAGGASRGVLLPLLSLDCSVTITNRTFSRAEALAALFAHTGSVSAVALDDLAEREFDLVINATSSGISGEIPAIPASLVSAHMYFYDMFYQKGKTPFLNWCEQHGAKQLADGLGMLVGQAAHAVLLWHGVLPSVEPVIEKLKQELSA
>NZ_CP045064.2|WP_008503475.1|3352349_3352922_+|L-threonylcarbamoyladenylate-synthase-type-1-TsaC
MNNNLPSGSIAHAVDVLKNEEVIAYPTEAVFGVGCDPDSETAVSRLLTLKQRPVEKGLILIAANYEQLKPYIDDSMLTPAQRETIFSAWPGPVTFVFPAQPTTPRWLTGRFDSLAVRVTDHPLVVELCLAFGKPLVSTSANLTGQPPCRTTEEVLAQFGNDFPVAVGETGGRLNPSEIRDALTGERFRQG
>NZ_CP045064.2|WP_126287353.1|3367180_3367441_-|hypothetical-protein
MNNLKPDRHRYKFAEPSSLLWRRSIAWLLTSVATGNSARFLASVASSNGAHFLASVISGNSAHFLASVTSGNSAHFLAGIFTGKGA
>NZ_CP045064.2|WP_032636754.1|3367509_3368235_+|TIGR03761-family-integrating-conjugative-element-protein
MSDGKTKGGTTASRAGALQSSVNILLHTHYAIRLWEGRKRDAPDETGVKKKRPEIISMPQAIARAGNASRDSAADNPYADMALVRLEEALQRATLKINENVSSLDSILSAVPKGVTLSEVESADPLNVSVFSRSPLGYRCVWLLVGYDQLAMKAFQAFHYGLISRSQRDAILDNGGHAVRQVYGVIQPYRTLAVTRRDIAEKTTQGLVAIERNGEPDPDVLSGKKRSSFSPPLKNTIAEEE
>NZ_CP045064.2|WP_032636756.1|3368236_3368791_+|hypothetical-protein
MIRPVFLLTSFFLLSGCATTDWAAINKQVSDTAATLTKTLGGNSSGESGGMPLMSPAGQQAMQSVDKTFSVPVDVDTAAARLKRHYKFISTQELEALRQAANDGDWKAAAEDDAHPVWDAMPGSYYKMGSDWNGRDHLDIEIEKNGSGSRLYVVYRSSSSQRLAGSGVTKLMNDVRAVAAGEKR
>NZ_CP045064.2|WP_110212570.1|3368806_3370816_+|DNA-topoisomerase-III
MQLFLCEKPSQAKDIARVLGISKREQGFISGGNIVVTWAVGHLLETASPEAYGEQYGRPWRADVLPVLPEAWKMVVKEQTKSQFTVISKLLKKASEVVIATDADREGEVIARELLEYCRYSGAVRRLWLSALDEASVKEALSSILPGEKTALLYDAGKGRSQADWLIGMNLTRLYTLKARDSGVSEVLSVGRVQTPTLAMVVNRDNEITSFVPKPWWQVHALIEKEGVRFRAGWVPVEQYCDEEKRCINPQAARAVGQLCQQQGRATVLEVTQKREKTAAPLCFDLGTLQQVCSRKFGMGANEVLAIAQSLYETHKATTYPRTDCGFLPTSMQQEIPDVLAAVAKSDPAVAPVLNQLDRQFVSRVWNDKKITAHHAIIPTRQAFDLSRLSADELKVYHLIRQHYFAQFLPLQESDVTEASFNIGGQLFRTRGKVGVVTGWKSLFQAEKDDDEEDVDGDSMALPALAKGNICAVTGSEVKDMKTSPPKPFTEGMLIAAMKNAASFVNDPKLKKVLRDNAGLGTEATRAAVLETLFKRHYLEKKGKHIHSTQMARELIAALPETLTSPGMTALWEQALDDISQGKMSLAVFMQKQLQWTRHLVEKGRQDSVKITAPVTPPCPLCKGPTRKRKGKNGDFWGCIRYPDCEGIISTSKKKAAKRKKTSVKAKTE
>NZ_CP045064.2|WP_032636760.1|3371451_3371922_+|DUF3577-domain-containing-protein
MSANNTSASAKSEYFNLTIKGIGYLSNIRQVNHQNGSFLSCVINALSGPTDNPAYVRFDISVAGKEATSLIARCQKAVDEDKKVLLGFNLSNPSTDIFTLNKGDHAGEQRVSLKARLIKVDWIKIGQDMVYKTEKSDSMPPQNGSAAQQNYAENSF
>NZ_CP045064.2|WP_032636762.1|3371983_3372520_+|single-stranded-DNA-binding-protein
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSCEQKEVTEWHRVVMFGKLAEIAGEYLRKGSQVYIEGQLRTRKWTDQAGQDKYTIEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPSHSGQASGSSAGAPPMDFDDDIPFIGFGYGVPKSAIHAL
>NZ_CP045064.2|WP_016807972.1|3372584_3372827_+|DUF4160-domain-containing-protein
MPVILRINGFRFFFYSNEGNPLEPAHIHVMKAGSEAKFWLTPSVALASNDGFNSRVLKELTGIVEDNQALFLEAWNDYFS
>NZ_CP045064.2|WP_004115558.1|3372810_3373059_+|DUF2442-domain-containing-protein
MTISAKRVSFDEATMWVELNDARTIGVPLAWFPRLLHASTEQLNSYELSPRGIHWDALDEDISIAGLLEGRGDVTHRPHKVA
>NZ_CP045064.2|WP_126287351.1|3373195_3373861_+|pilus-assembly-protein-PilL
MKRNTSHNVFSPGRLATVLPLLLLAGCVSQPQNLQQRAPADPTPGTTVTRNVQPVSPDEYARTPEVVRYDRYLLVSTDPQAAQRDPLSQIIDIRIPSSLHPTVADALRYALRQSGYSLCATGSANGVLYRQALPAVQYQLGPMRLRTALQVMAGPAWQLEVDDVQRVVCHILRDGYQLPVSQLPPPVSTWSTPAPSAVSQPAIRTPQSVPIKPVSGGFLRK
>NZ_CP045064.2|WP_034951183.1|3373857_3374616_+|hypothetical-protein
MSEQQPFHTDPAPARKRFSWRPRRRLIWGAAGGVALAGILALGYTAFSLGISNLDERLTRLESQGSTAATVETVAALQSDVTMLRAGLQDTRKKLGEMQQELSAAAKQAGSDDAVRQSLRTLQDAQQGLETRLSALTEQLTALKSQPAPAPAAPVAAPVKKIAPAAKKPRPADTRRAAPSLRVARNAPFVLTGVEKRGAESWAAIAPRGYSNLSQVALVGEGETVAGWTLVSAGYGEATFRVNGRLTVLRAE

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Crispr_ID: NZ_CP045064_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045064_3

3596489-3596633

Orphan

Consensus_repeat	Method
CGCTTGCACGGGCCTACGGGCTGGGTGTTCTCCCTCTCCCTGTGGGAGAGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045064_3

>merge|NZ_CP045064|3|3596489-3596633|CRISPRCasFinder
CGCTTGCACGGGCCTACGGGCTGGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCATCAGGCCGCATCACCGCCTGATTCGCCCGGCGGCGCTACGCTTGCACGGGCCTACGGGTTGGGTGTTCTCCCTCTCCCTGTGGGAGAGGGC

>NZ_CP045064|3|3|3596489-3596633|CRISPRCasFinder
CGCTTGCACGGGCCTACGGGCTGGGTGTTCTCCCTCTCCCTGTGGGAGAGGGC	ATCAGGCCGCATCACCGCCTGATTCGCCCGGCGGCGCTA
CGCTTGCACGGGCCTACGGGTTGGGTGTTCTCCCTCTCCCTGTGGGAGAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045064.2\|WP_021240672.1\|3585977_3586889_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
NZ_CP045064.2\|WP_008501386.1\|3584946_3585951_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
NZ_CP045064.2\|WP_058654283.1\|3589471_3590380_+\|2-keto-3-deoxygluconate-aldolase	unknown	unknown	gnl\|CDD\|223406
NZ_CP045064.2\|WP_001118619.1\|3601075_3601999_-\|IS5-like-element-IS903B-family-transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP045064.2\|WP_058654278.1\|3599096_3599819_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045064.2\|WP_058654266.1\|3606212_3607607_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
NZ_CP045064.2\|WP_008501387.1\|3583495_3584899_-\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207
NZ_CP045064.2\|WP_058654279.1\|3598307_3599066_+\|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE	unknown	unknown	gnl\|CDD\|114868
NZ_CP045064.2\|WP_058654281.1\|3593982_3595593_+\|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl\|CDD\|226038
NZ_CP045064.2\|WP_058654269.1\|3603469_3603889_+\|FosA/FosA2-family-fosfomycin-resistance-glutathione-transferase	unknown	unknown	gnl\|CDD\|319908
NZ_CP045064.2\|WP_058654267.1\|3605073_3606162_+\|cellulase-family-glycosylhydrolase	unknown	unknown	gnl\|CDD\|226444
NZ_CP045064.2\|WP_008501384.1\|3586899_3588120_-\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NZ_CP045064.2\|WP_023293405.1\|3592588_3593971_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|236610
NZ_CP045064.2\|WP_058654284.1\|3588795_3589248_+\|DUF386-domain-containing-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP045064.2\|WP_058654280.1\|3595597_3596356_-\|DNA-binding-transcriptional-repressor-XynR	unknown	unknown	gnl\|CDD\|224332
NZ_CP045064.2\|WP_058654282.1\|3590394_3592362_+\|YjhG/YagF-family-D-xylonate-dehydratase	unknown	unknown	gnl\|CDD\|236189
NZ_CP045064.2\|WP_003862940.1\|3597835_3598261_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP045064.2\|WP_058654268.1\|3603880_3604888_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380511
NZ_CP045064.2\|WP_039023963.1\|3602268_3603270_-\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183400
NZ_CP045064.2\|WP_010427327.1\|3596666_3597671_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587

Protein	Function_ID	Function_description	E-value
NZ_CP045064.2\|WP_021240672.1\|3585977_3586889_-\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
NZ_CP045064.2\|WP_008501386.1\|3584946_3585951_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
NZ_CP045064.2\|WP_058654283.1\|3589471_3590380_+\|2-keto-3-deoxygluconate-aldolase	gnl\|CDD\|223406	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].	3.87751e-108
NZ_CP045064.2\|WP_001118619.1\|3601075_3601999_-\|IS5-like-element-IS903B-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.1599e-57
NZ_CP045064.2\|WP_058654266.1\|3606212_3607607_+\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	7.11477e-119
NZ_CP045064.2\|WP_008501387.1\|3583495_3584899_-\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
NZ_CP045064.2\|WP_058654279.1\|3598307_3599066_+\|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE	gnl\|CDD\|114868	pfam06175, MiaE, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). This family consists of several bacterial tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.	5.4762e-103
NZ_CP045064.2\|WP_058654281.1\|3593982_3595593_+\|glycoside-hydrolase-family-43-protein	gnl\|CDD\|226038	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].	0
NZ_CP045064.2\|WP_058654269.1\|3603469_3603889_+\|FosA/FosA2-family-fosfomycin-resistance-glutathione-transferase	gnl\|CDD\|319908	cd07244, FosA, fosfomycin resistant protein subfamily FosA. This subfamily family contains FosA, a fosfomycin resistant protein. FosA is a Mn(II) and K(+)-dependent glutathione transferase. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.	2.75055e-72
NZ_CP045064.2\|WP_058654267.1\|3605073_3606162_+\|cellulase-family-glycosylhydrolase	gnl\|CDD\|226444	COG3934, COG3934, Endo-beta-mannanase [Carbohydrate transport and metabolism].	0.00979328
NZ_CP045064.2\|WP_008501384.1\|3586899_3588120_-\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NZ_CP045064.2\|WP_023293405.1\|3592588_3593971_+\|MFS-transporter	gnl\|CDD\|236610	PRK09669, PRK09669, putative symporter YagG; Provisional.	0
NZ_CP045064.2\|WP_058654284.1\|3588795_3589248_+\|DUF386-domain-containing-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	7.21246e-64
NZ_CP045064.2\|WP_058654280.1\|3595597_3596356_-\|DNA-binding-transcriptional-repressor-XynR	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.6042e-88
NZ_CP045064.2\|WP_058654282.1\|3590394_3592362_+\|YjhG/YagF-family-D-xylonate-dehydratase	gnl\|CDD\|236189	PRK08211, PRK08211, YjhG/YagF family D-xylonate dehydratase.	0
NZ_CP045064.2\|WP_003862940.1\|3597835_3598261_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	1.62426e-65
NZ_CP045064.2\|WP_058654268.1\|3603880_3604888_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380511	cd06288, PBP1_sucrose_transcription_regulator, ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	4.19306e-100
NZ_CP045064.2\|WP_039023963.1\|3602268_3603270_-\|tryptophan--tRNA-ligase	gnl\|CDD\|183400	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.	0
NZ_CP045064.2\|WP_010427327.1\|3596666_3597671_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0

>NZ_CP045064.2|WP_058654280.1|3595597_3596356_-|DNA-binding-transcriptional-repressor-XynR
MPIIQSVERALQILDLFNEQATELKITDISKLMGLSKSTLHSLLKTLQLHGYIDQNPENGKYRLGMKLVERGHFVVGSIDIRQKAKGWLTELSQRTGQTTHLGILDGREGVYIEKIEGKLAAIAYSRIGRRLPVHATAIGKVLIAWLGETELNALLEGYQYTTYTPSTLASREALMAALAQTREQGYALDSEENEQGVRCVAVPVWNHESRVIAALSLSTLTSRVDDAELAGFREQLQQAGLQLSRALGYPA
>NZ_CP045064.2|WP_058654281.1|3593982_3595593_+|glycoside-hydrolase-family-43-protein
MEITNPILTGFNPDPSLCRQGEDYYIATSTFEWFPGVRIYHSRDLKNWSLVSTPLDRVSMLDMKGNPDSGGIWAPCLSYADGKFWLLYTDVKIVDSPWKNGRNFLVTAPSIEGPWSEPIPMGNGGFDPSLFHDDDGRKYYLYRPWGPRHHSNPHNTIVMQAFDPQTGTLSPERKTLFTGTPLCYTEGAHLYRHAGWYYLMVAEGGTSYEHAVVVLRSKTIDGPYELHPEVTMMTSWHLPENPLQKSGHGSLLQTHTGEWYMAYLTSRPLRLPGVPLLASGGRGYCPLGRETGIARIEWRDGWPYVEGGKHAQLTVKGPQVAEQPASVQGSWREDFDGSTLDPELQTLRVPFDDTLGSLTARPGYLRLYGNDSLNSTFTQSTVARRWQHFTFRSETRMQFSPVHFQQSAGLTCYYNSKNWSYCFVDYEEGQGRTIKVIQLDHNVPSWPLHEQPIPVPESAESIWLRVDVDTLVYRYSYSFDGETWHAVPVTYEAWKLSDDYIGGRGFFTGAFVGLHCEDISGDGCHADFDYFTYEPV
>NZ_CP045064.2|WP_023293405.1|3592588_3593971_+|MFS-transporter
MTQLTMKDKIGYGLGDTACGFVWQATMFLLAYFYTDVFGLSAGIMGTLFLISRVLDAVTDPLMGLLVDRTRTRHGQFRPFLLWGAIPFGIVCVLTFYTPDFSAQGKIIYACVTYILLTLVYTFVNVPYCAMPGVITADPKERHALQSWRFFLAAAGSLAISGIALPLVSIIGKGDEQVGYFGAMCVLGLTGVVLLYVCFFTTKERYTFEVQPGSSVAKDLKLLLGNGQWRIMCAFKMMATCSNVVRGGATLYFVKYVMDHPEMATQFLLYGSLATMFGSLCSSRLLGRFDRVTAFKWIIVAYSLISLLIFVTPAEHIALIFALNILFLFVFNTTTPLQWLMASDVVDYEESRSGRRLDGLVFSTYLFSLKIGLAIGGAVVGWILAYVNYSASSSVQPVEVLTTIKILFCVVPVVLYAGMFIMLSFYKLTDARVEAISQQLIKHRAAQGEAVPDAATAASH
>NZ_CP045064.2|WP_058654282.1|3590394_3592362_+|YjhG/YagF-family-D-xylonate-dehydratase
MTIEKIFTPQDDAFYAVITHAAGPQGALPLTPQMLMESPSGNLFGMTQNAGMGWDANKLTGKEVLIIGTQGGIRAGDGRPVALGYHTGHWEIGMQMQAAAKEITRNGGIPFAAFVSDPCDGRSQGTHGMFDSLPYRNDAAIVFRRLIRSLPTRRAVIGVATCDKGLPATMIALAAMHDLPTILVPGGATLPPTVGEDAGKVQTIGARFANHELSLQEAAELGCRACASPGGGCQFLGTAGTSQVVAEALGLALPHSALAPSGQAVWLEIARQSARAVSELDNRGITTRDILTDKAIENAMVIHAAFGGSTNLLLHIPAIAHAAGCTIPDVEHWTRVNRRVPRLVSVLPNGPDYHPTVRAFLAGGVPEVMLHLRDLGLLHLDAMTVTGQTVGENLDWWQASERRERFRQCLREQDGVDPDDVILPPEKAKAKGLTSTVCFPTGNIAPEGSVIKATAIDPSVVGEDGVYRHTGRARVFVSEAQAIKAIKREEIKQGDIMVVIGGGPSGTGMEETYQLTSALKHISWGKTVSLITDARFSGVSTGACFGHVSPEALAGGPIGKLRDNDIIEIAVDRLTLTGSVNFIGTVDNPLTPEQGARELAMRQTHPDLHAHDFLPDDTRLWAALQSVSGGTWKGCIYDTDKIIEVINAGKKALGI
>NZ_CP045064.2|WP_058654283.1|3589471_3590380_+|2-keto-3-deoxygluconate-aldolase
MPQSALFTGIIPPVSTIFTADGQLDKQGTAALIDDLIKAGVDGLFFLGSGGEFSQLSAEERKTIAQFAIDHVDRRVPVLIGTGGTNARETIALSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIVGIKDTIDSVAHLRSMIHTVKAAHPHFTVLCGYDDHLFNTLLLGGDGAISASGNFAPQVSVNLLKAWRDKDVAKAAEYHQTLLQIPQMYQLDTPFVNVIKEAIVLCGRPISTHVLPPASPLDEPRKAQLKTLLQQLKLC
>NZ_CP045064.2|WP_058654284.1|3588795_3589248_+|DUF386-domain-containing-protein
MIIGNIHHLHSWLPDELRQAIEHVKTHVTDTTPLGKHDVNGNSLFYLVSEDTTQPFAERRAEYHARYLDIQIVMKGQEGMTFSTLPPGTPDTDWLADKDIASLPEGEQEKTVVLSEGDFVVFWPGEVHKPLCAVGAPAKVRKVVVKMLVE
>NZ_CP045064.2|WP_008501384.1|3586899_3588120_-|arginine-deiminase
MEKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFANTLREQGVEVLLLTDLLTQTLDIAEAKAWLLETQISDYRLGPTFAGDVRGWLADMPHRELARRLSGGLTYGEIPAAIKNMVVDTHTANDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPAFADGDFIKYFGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGVEFLANSLFKHRQAERVIAVELPKHRSCMHLDTVMTHIDVDTFSVYPEVVRKDAQCWTLTPDGRGGLLRTQETDLLHAIEKALGINQVRLITTGGDAFEAEREQWNDANNVLTIRPGVVIGYERNVWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLERDGI
>NZ_CP045064.2|WP_021240672.1|3585977_3586889_-|carbamate-kinase
MERKPTLVVALGGNALLKRGEPLEAEIQRQNIEQAARTIAGLTAQWRVVLVHGNGPQVGLLALQNSAYDKVTPYPLDVLGAESQGMIGYMLQQALKNSLPQREVSVLLTQVEVDAADPAFSNPTKYIGPVYSEAQAKMLAAEKGWVFKADGSYVRRVVPSPQPKRIVESDAITALIQRDHLVICNGGGGVPVVEQANGYRGIEAVIDKDLSAALLARQIEADALLILTDADAVYLDWGKPTQRPLAQVTPELLRGMQFDAGSMGPKVAACREFVEACNGIAGIGALADGAEILAGEKGTLIRN
>NZ_CP045064.2|WP_008501386.1|3584946_3585951_-|ornithine-carbamoyltransferase
MTINLKNRNFLKLLDYTPAEIQYLIDLAIELKAAKKAGREKQTLVGKNIALIFEKTSTRTRCAFEVGAFDQGAQVTYLGPSGSQIGHKESMKDTARVLGRMYDGIEYRGYGQAIVEELGEYAGVPVWNGLTDEFHPTQILADLMTMLEHSPGKTLPELSFAYLGDARNNMGNSLMVGAAKMGMDIRLVAPKSFWPEAGLVEQCRAIAKETGARITLTDDVEEGVQGTDFLYTDVWVSMGEPKEAWAERVSLMKPYQINAQVMKATGNPNVKFMHCLPAFHNEHTKVGREIEMAYGLKGLEVTEEVFESPNSIVFDEAENRMHTIKAVMVATLGD
>NZ_CP045064.2|WP_008501387.1|3583495_3584899_-|YfcC-family-protein
MGKFKFPSAYTILFFLIAVVAVLTWIVPAGQYHMAMNEALGKDVPVAGTYAHVAAHPQGLVSVLMAPIAGLYDPESGQAGAIDVALFILIIGGFLGIVTKTGAIDAGIERVTTRLRGREEWMIPILMALFAAGGTIYGMAEESLPFYTLLVPVMLAARFDPVVAASTVLLGAGIGTLGSTINPFATVIAANAAGIPFTNGIALRVALLVIGWIICVAWVMRYARKVRKDPSQSIVADKQEENLAHFLGNKGEQSLEFTPVRKIILVIFALAFAVMIYGVAVLGWWMAEISAVFLASAIIVGLIARMSEEELTSTFINGARDLLGVALIIGIARGIVVIMDKGMITHTILHSAEGLVSGLSTVAFINVMYWLEVVLSFLVPSSSGLAVLTMPIMAPLADFANVNRDLVVTAYQSASGIVNLVTPTSAVVMGGLAIARVPYVRYLKWVAPLLAILTVVIMVALSLGALL
>NZ_CP045064.2|WP_010427327.1|3596666_3597671_-|ornithine-carbamoyltransferase
MSDLYKKHFLKLLDFTPAQFTSLLTLAAQLKADKKNGKEVQKLTGKNIALIFEKDSTRTRCSFEVAAFDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAQYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPKACWPEESLVAECSALAEKHGGKITLTEDVAAGVKGADFIYTDVWVSMGEAKEKWAERIALLRGYQVNAQMMALTGNPDVKFLHCLPAFHDDQTTLGKQMAKEFDLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLGE
>NZ_CP045064.2|WP_003862940.1|3597835_3598261_+|ribonuclease-E-inhibitor-RraB
MANPELLEEQREETRLIIEELLEDGSDPDALYTIEHHFSADDFDALEKMAVEAFKLGYEVTEPEELEVEEGDTVICCDILSEGALKAELIDAQVEQLMNLAEKFEVEYDGWGTYFEDPNGEDGEEGDDEDYVDEDDDGVRH
>NZ_CP045064.2|WP_058654279.1|3598307_3599066_+|tRNA-isopentenyl-2-thiomethyl-A-37-hydroxylase-MiaE
MDYPQILAPVLNFLQCPTPQAWIDKARDPVNLPLLLTDHMVCELKAAQTALLLVRKYVADESGADALLDWLKPYEQFTFRDGPEPDFIALHRQIGKSVMPKTDDPWGQALIDSMVLLIKEELHHFWQVREAMLARDIPYVKITASRYAKGMLKEVRTHEPLTLIDKLICGAYIEARSCERFAALAPFLDDDLQKFYLSLLRSEARHYQDYLTLARQVSDDDISPRIKLFGEIEATLISTPDNEFRFHSGVPV
>NZ_CP045064.2|WP_058654278.1|3599096_3599819_+|hypothetical-protein
MNKTWTRIVIVVIAAAAVAFWVFFDRQRAPERQMDNALNAMPAWQVIKEQEPALHQRILDQMAALQKAGEPEQQIIDTIQPQILHLQMSRLQNAPDANVVNYMTINMEQTAAIQKVSDDACFRFLYPMVKGGVNPMRMLDKDLMTRRMQADADMMRAAYGKNRHTVTQAEREAAVEDVRPIMKELADKYGEDIQLLQMPEKAVGKEKLSCDMVQEMWAKVLALPEQKAAGVIRLAVSELE
>NZ_CP045064.2|WP_001118619.1|3601075_3601999_-|IS5-like-element-IS903B-family-transposase
MAKQKFKITNWPTYNKALINRGSITFWLDDEAIQAWYESATPSSRGRPQRYSDLAITTVLVIKRVFRLTLRAAQGFIDSIFSLMNVPLRCPDYSCVSRRAKSVNVSFKTPTRGEIAHLVIDSTGLKVFGEGEWKVKKHGQERRRIWRKLHLAVDSKTHEIICADLSLNNVTDSEAFPGLIRQTHRKIRSAAADGAYDTRLCHDELRRKKISALIPPRKGAGYWPGEYADRNRAVANQRMTGSNARWKWTTDYNRRSIAETAMYRVKQLFGGSLTLRDYDGQVAEAMALVRALNKMTKAGMPESVRIA
>NZ_CP045064.2|WP_039023963.1|3602268_3603270_-|tryptophan--tRNA-ligase
MNAPTILTGDRPTGPLHLGHFVGSLRQRVALQHTHNQFVLIADLQGLTDNGSNPQKIRDNIPEVLADYLAAGIDPNLTTICLQSALPALAELTMLYMNIVTVARVERNPTVKNEIAQKGFARSLPVGFMAYPISQAADITAFKAECVPVGDDQLPMIEQTNEIVHKMNSLLPAPVLRHCKAMLSDTSRLPGIDGSAKMSKSLGNTLHLSASEETIHRAVSAMYTDPNHLKVSDPGQIEGNVVFTYLDAFHPDKEKVAAMKAHYQLGGLGDRVCKNELEGCLQELIAPMRERRAMYMQDKGELMAMLKRGTERAQGVTQETLREVKVGLGVPVF
>NZ_CP045064.2|WP_058654269.1|3603469_3603889_+|FosA/FosA2-family-fosfomycin-resistance-glutathione-transferase
MLQSLNHLTLAVSDLQKSVTFWHELLGLTLHARWNTGAYLTCGDLWVCLSYDEARQYVPPQESDYTHYAFTVVEEDFEPFSHRLEQAGVTVWKQNKSEGASFYFLDPDGHKLELHVGSLAARLAACREKPYAGMVFTSD
>NZ_CP045064.2|WP_058654268.1|3603880_3604888_-|LacI-family-DNA-binding-transcriptional-regulator
MKRKTKVTMNDIARAAGVSQATVSLVLNQSRNIKLSDDTRQRVINVATELGYDRLPAVHAPRNQEEIALLVSSMQSFDPFIDAISQAREAAWRNETLLTVYDYGDDIELALNIIRQLEKRNCIGIVLASPVTTLVDMTAFQDCTRIPLVLLNQRDPGSPLLPSFIPDDYANAFQVTKHLIACGATRIAHITGESWMEASRQRLAGYQAALQQAGLACDDNLVRQTNWQFSESFTATTSLLELVERPDAIFCASDWLAIGCYQALAMNGVRIPQDMLLAGYDDQKISEQLTPPLTSIQLPYSELGRLAVEYLCNQEDAATHVTLAGRLKVRASSLV
>NZ_CP045064.2|WP_058654267.1|3605073_3606162_+|cellulase-family-glycosylhydrolase
MKEQWSREQAQAWYQQKGWLCGFNYLPSTAVNWTDIWQAETFDAETIERELGWAAEAGYNTLRINLPFIVWEHDRDGLMARIDRFLTIADSHGFSTMLTLMDDCGFSGDEPYLGPQKPPVPGKHNSQAAASPGRDKVCDPDCWADIERYIRDVVRQFRDDRRVLLWDLYNEPGNRGIFATGTQEVQYDAKLETCAHELMKLAFQWGREEDPTQPLTVCAWRLPPEEEGETFFQHPLDQTALALSDVVSFHAYTHTGRMTAIIQQLQQLGRPLFCTEWLARHVGSTIEEQLPLMYAAKVAPYQWGLVRGKTQTWLPWPVVMKESTDYCRLWFHDVFEENGIPFSRREIALMQQLRKIAPKVKG
>NZ_CP045064.2|WP_058654266.1|3606212_3607607_+|MFS-transporter
MAMTMKIPSRELWSYFGYGLGQCFSFGLVGSFINYFYTDVLGISALAASTIFLIARAWDAVHDPLFASIMDTINSRFGKFRHFLLIAPLLITGVTLLSFYKIEADMTTKILYAGVTYILWGTLYAISDIPFWSMSSVMTNDSGQRTRAVTAAMLGVNAGIACANIFFPKLAAYFAQYSNDKGYFMAALVMMLVGLPLMLNGFMQIKERVPPSPEKVTIRDTFHNLRQNKPLFIVLLSFFFCVFHNVAGGLYIYFFINNLGDGSLQMAIGVMGIVAAVLCLVAPMLTRRMQKRKLFMILCGLDVAVRVVMWFVGYQQVTMLFILLGLSTLFVMMTNILTSSMIADTIEYAEYHTHKRCAAITFSGQTFTGKMSVAVGGGLIGVFLTMIGYVPQAQIQSESVLSGLFFGICLLPAIGSLIRMGFMSRFTFTEEKHAEVCRLLAERNASAKAPGGGCALPGLQDQPL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045064_1	1.1\|2546034\|28\|NZ_CP045064\|CRISPRCasFinder	2546034-2546061	28	NC_008538	Arthrobacter sp. FB24 plasmid 2, complete sequence	6793-6820	5	0.821
NZ_CP045064_1	1.1\|2546034\|28\|NZ_CP045064\|CRISPRCasFinder	2546034-2546061	28	NZ_CP021405	Celeribacter manganoxidans strain DY25 plasmid pDY25-A, complete sequence	28994-29021	7	0.75
NZ_CP045064_1	1.1\|2546034\|28\|NZ_CP045064\|CRISPRCasFinder	2546034-2546061	28	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1669220-1669247	7	0.75
NZ_CP045064_1	1.1\|2546034\|28\|NZ_CP045064\|CRISPRCasFinder	2546034-2546061	28	NZ_MF600313	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_1, complete sequence	78098-78125	7	0.75

1. spacer 1.1|2546034|28|NZ_CP045064|CRISPRCasFinder matches to NC_008538 (Arthrobacter sp. FB24 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.821

gaagccgccacccggcaacgcgaacacc	CRISPR spacer
ggcgccgccacccggcaacgccaccagc	Protospacer
*. ****************** * ** *

2. spacer 1.1|2546034|28|NZ_CP045064|CRISPRCasFinder matches to NZ_CP021405 (Celeribacter manganoxidans strain DY25 plasmid pDY25-A, complete sequence) position: , mismatch: 7, identity: 0.75

gaagccgccacccggcaac-----gcgaacacc	CRISPR spacer
aaagccgccacccggcaacccgctacga-----	Protospacer
.******************     .***

3. spacer 1.1|2546034|28|NZ_CP045064|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gaagccgccacccggcaacgcgaacacc	CRISPR spacer
ttcgccgatacccggcaacgcgaacatg	Protospacer
   **** .*****************.

4. spacer 1.1|2546034|28|NZ_CP045064|CRISPRCasFinder matches to NZ_MF600313 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_1, complete sequence) position: , mismatch: 7, identity: 0.75

gaagccgccacccggcaacgcgaacacc	CRISPR spacer
cggatcggcacccgccaacgcgaacacc	Protospacer
 ....** ****** *************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12860 : 22311

Enterobacteria_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152164581.1\|12860_16049_+	DUF1983 domain-containing protein	K7P7G9	Enterobacteria_phage	0.0e+00	89.0
WP_126287103.1\|16407_17079_+	hypothetical protein	A0A2P0WA07	Enterobacter_phage	1.7e-86	72.6
WP_045409817.1\|17186_17420_+	hypothetical protein	E4WL42	Enterobacteria_phage	3.6e-28	71.1
WP_126287104.1\|19313_19769_+	hypothetical protein	M1FJ98	Enterobacteria_phage	4.0e-07	53.8
WP_126287105.1\|19825_20068_-	DinI family protein	Q6UAW0	Klebsiella_phage	1.1e-27	72.2
WP_126287106.1\|20167_20407_+	hypothetical protein	K7P7N3	Enterobacteria_phage	3.4e-29	73.1
WP_126287107.1\|20406_20727_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.2e-34	65.1
WP_059445231.1\|21027_22311_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.3e-10	36.3

DBSCAN-SWA_2

820397 : 917776

105

Enterobacteria_phage(21.88%)

tRNA,head,holin,terminase,integrase,protease,portal,tail,coat,capsid

attL 818444:818460|attR 900014:900030

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
818444:818460	attL	NA	NA	NA	NA
WP_014884290.1\|820397_821279_-\|protease	protease HtpX	NA	NA	NA	NA
WP_008500478.1\|821472_823521_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.1e-83	32.8
WP_008500477.1\|823540_824227_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_008500476.1\|824323_824821_-	GAF domain-containing protein	NA	NA	NA	NA
WP_008500475.1\|824953_826237_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_008500474.1\|826205_828839_+	PqiB family protein	NA	NA	NA	NA
WP_046092768.1\|828916_830359_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_008500472.1\|830465_830705_+	YebV family protein	NA	NA	NA	NA
WP_045372529.1\|830739_831384_-	protein-serine/threonine phosphatase	Q8HA16	Enterobacteria_phage	8.2e-54	47.7
WP_058653385.1\|831550_832492_+	DUF535 domain-containing protein	NA	NA	NA	NA
WP_008500468.1\|832897_833236_-	YebY family protein	NA	NA	NA	NA
WP_126287158.1\|833252_834122_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_058653388.1\|834123_834495_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_008500465.1\|834632_834863_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	9.1e-16	61.8
WP_008500464.1\|834973_835624_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_008500463.1\|835648_836311_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	1.1e-05	34.8
WP_058653390.1\|836307_838368_-	oligopeptidase B	NA	NA	NA	NA
WP_058653392.1\|838453_839104_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_058653394.1\|839275_840454_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_008500459.1\|840495_841137_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_023325516.1\|841176_842988_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_008500457.1\|843221_844697_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	7.8e-76	36.0
WP_008500456.1\|845053_845923_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_008500455.1\|846060_847503_+	pyruvate kinase	NA	NA	NA	NA
WP_008500454.1\|847549_848521_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_008500453.1\|848641_849961_-	murein DD-endopeptidase MepM	Q8SBN9	Clostridium_phage	3.4e-14	39.7
WP_058653437.1\|849976_850921_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_023293956.1\|850998_851754_+	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	2.1e-16	31.1
WP_048029424.1\|851750_852536_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_008500449.1\|852588_853599_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	8.1e-08	24.2
WP_126287159.1\|853607_854222_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_003859749.1\|854302_854824_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
WP_008500447.1\|854858_855599_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_008500446.1\|855626_856070_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_008500445.1\|856071_857844_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_058653395.1\|858107_858674_+	hydrolase	NA	NA	NA	NA
WP_126287160.1\|859038_859278_+	DinI family protein	K7P797	Enterobacteria_phage	3.5e-34	92.4
WP_126287161.1\|859335_859749_-\|tail	tail assembly chaperone	K7P7H0	Enterobacteria_phage	2.1e-71	97.8
WP_126287162.1\|859750_860611_-	hypothetical protein	K7P7B1	Enterobacteria_phage	4.2e-146	91.3
WP_126287163.1\|860620_861172_-	hypothetical protein	A0A0E3GMH9	Enterobacteria_phage	7.0e-22	35.0
WP_126287164.1\|861772_864949_-	host specificity protein J	O64335	Escherichia_phage	0.0e+00	88.3
WP_058673520.1\|865001_865592_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	4.8e-77	77.6
WP_058673519.1\|865650_866064_-	hypothetical protein	G8C7Q7	Escherichia_phage	1.4e-51	64.2
WP_126287165.1\|866093_866804_-	peptidase P60	K7PGV2	Enterobacterial_phage	1.1e-144	97.9
WP_126287166.1\|866805_867561_-\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	1.1e-139	95.6
WP_063922237.1\|867557_867896_-\|tail	phage tail protein	K7P7R1	Enterobacteria_phage	2.8e-61	97.3
WP_126287167.1\|867898_871237_-\|tail	phage tail tape measure protein	K7PH87	Enterobacterial_phage	0.0e+00	68.7
WP_000050396.1\|871271_871535_-	DUF4035 domain-containing protein	K7P7L5	Enterobacteria_phage	8.5e-42	98.9
WP_126287168.1\|871558_871960_-\|tail	phage tail protein	K7PGV0	Enterobacterial_phage	9.5e-69	99.2
WP_126287169.1\|872014_872485_-\|tail	phage tail protein	A0A220NRQ0	Escherichia_phage	2.2e-80	98.1
WP_047389186.1\|872539_872887_-	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	1.1e-57	98.3
WP_016063565.1\|872883_873333_-	HK97 gp10 family phage protein	K7PH84	Enterobacterial_phage	4.0e-76	100.0
WP_047352741.1\|873329_873668_-\|head	phage head closure protein	K7P7L2	Enterobacteria_phage	6.4e-58	99.1
WP_077883852.1\|873667_873994_-	hypothetical protein	K7PGU9	Enterobacterial_phage	3.5e-53	95.4
WP_047352742.1\|874028_875186_-\|capsid	phage major capsid protein	Q77WA0	Escherichia_phage	8.8e-208	97.1
WP_126287170.1\|875188_875866_-\|head,protease	HK97 family phage prohead protease	K7PKL4	Enterobacterial_phage	1.2e-124	99.6
WP_126287171.1\|875883_877158_-\|portal	phage portal protein	F1C584	Cronobacter_phage	2.6e-245	97.4
WP_126287172.1\|877157_878672_-\|terminase	terminase large subunit	Q9MCT1	Enterobacteria_phage	1.4e-293	99.6
WP_126287173.1\|878678_879164_-\|terminase	terminase	K7PGU7	Enterobacterial_phage	2.9e-80	97.5
WP_126287174.1\|879347_879551_-	hypothetical protein	A0A220NRN5	Escherichia_phage	1.7e-21	79.1
WP_001031354.1\|879550_879892_-	HNH endonuclease	K7PM05	Enterobacterial_phage	4.6e-64	99.1
WP_126287175.1\|879888_880479_-	hypothetical protein	K7PGW6	Enterobacterial_phage	1.6e-101	87.8
WP_033146307.1\|880459_880972_-	HNH endonuclease	K7PJS8	Enterobacterial_phage	1.9e-98	98.2
WP_126287176.1\|881012_882470_-	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	3.4e-281	95.1
WP_126287177.1\|882481_882955_-	hypothetical protein	K7PH02	Enterobacteria_phage	9.8e-73	89.7
WP_126287184.1\|883080_883275_-	hypothetical protein	K7PM01	Enterobacterial_phage	4.3e-19	93.6
WP_047633741.1\|883231_883501_-	hypothetical protein	G8C7W1	Escherichia_phage	1.2e-27	77.5
WP_032665922.1\|883497_884040_-	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	6.2e-79	74.3
WP_023150207.1\|884039_884318_-\|holin	phage holin family protein	G8C7V9	Escherichia_phage	4.7e-43	97.8
WP_023150206.1\|884307_884697_-	hypothetical protein	G8C7V8	Escherichia_phage	8.9e-64	99.2
WP_023150205.1\|885476_885962_-	HNH endonuclease	A0A2I7RSG2	Vibrio_phage	6.0e-25	43.2
WP_053520795.1\|886256_887039_-	antitermination protein	F1C595	Cronobacter_phage	6.3e-109	76.4
WP_126287178.1\|887035_888007_-	DNA primase	A0A1B5FPA8	Escherichia_phage	9.5e-155	80.7
WP_063849193.1\|888003_889623_-	DEAD/DEAH box helicase	F1C598	Cronobacter_phage	2.2e-281	87.4
WP_000014299.1\|890327_890549_-	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	1.5e-31	98.6
WP_110820212.1\|890646_891315_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	1.0e-123	98.2
WP_126287179.1\|891485_891800_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	6.3e-44	88.5
WP_110820211.1\|891792_891981_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	3.9e-25	96.8
WP_110820210.1\|892148_892508_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	3.0e-37	67.5
WP_110820208.1\|892722_893136_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	4.0e-46	65.0
WP_110820207.1\|893135_893714_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	9.8e-75	68.2
WP_045285663.1\|893725_894469_+	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	8.6e-132	94.3
WP_110820206.1\|894456_894843_+	hypothetical protein	NA	NA	NA	NA
WP_110820205.1\|894826_895072_+	excisionase family protein	Q8W657	Enterobacteria_phage	3.5e-34	84.0
WP_110820204.1\|895127_896441_+\|integrase	site-specific integrase	Q8W658	Enterobacteria_phage	3.8e-223	86.5
WP_126287180.1\|896419_897193_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.8e-55	79.5
WP_021240443.1\|897244_897640_+	membrane protein	NA	NA	NA	NA
WP_008500441.1\|897680_898424_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	2.0e-24	30.9
WP_058653399.1\|898420_899392_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_126287185.1\|899567_900311_-	copper homeostasis protein CutC	NA	NA	NA	NA
900014:900030	attR	NA	NA	NA	NA
WP_058653403.1\|900380_900950_-	VOC family protein	NA	NA	NA	NA
WP_058653405.1\|901189_902923_+\|tRNA	arginine--tRNA ligase	A0A1V0SIS8	Klosneuvirus	1.3e-85	36.6
WP_044596634.1\|902981_903374_-	flagellar protein FlhE	NA	NA	NA	NA
WP_087855432.1\|903373_905452_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_021240449.1\|905444_906593_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_008500432.1\|906741_907386_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_008500431.1\|907396_907786_-	chemotaxis protein CheY	Q56AR1	Bacillus_thuringiensis_phage	7.7e-07	32.2
WP_008500430.1\|907803_908853_-	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	2.3e-05	32.0
WP_126287181.1\|908849_909716_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_058653408.1\|909735_911337_-	methyl-accepting chemotaxis protein IV	A0A2H4J162	uncultured_Caudovirales_phage	2.1e-10	44.9
WP_058653411.1\|911381_913049_-	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	9.3e-09	26.7
WP_025912281.1\|913133_914096_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_058653413.1\|914092_916477_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_023344438.1\|916452_917211_-	molecular chaperone	NA	NA	NA	NA
WP_032622788.1\|917227_917776_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

1209154 : 1315529

114

Salmonella_phage(14.0%)

head,terminase,plate,integrase,protease,portal,tail,lysis,capsid,transposase

attL 1287656:1287671|attR 1301884:1301899

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008500916.1\|1209154_1209850_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_126287267.1\|1209979_1210864_+	cytidine deaminase	NA	NA	NA	NA
WP_008500918.1\|1210991_1211708_+	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_058654907.1\|1211832_1213221_+	glutamine synthetase	NA	NA	NA	NA
WP_008500921.1\|1213272_1214283_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_087855400.1\|1214298_1215819_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	1.2e-10	33.5
WP_008500923.1\|1215898_1216897_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_008500924.1\|1217192_1218215_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_058654872.1\|1218370_1219528_-	DUF418 family protein	NA	NA	NA	NA
WP_008500927.1\|1219547_1220216_-	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	6.9e-56	55.8
WP_058654870.1\|1220318_1221467_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_058654868.1\|1221605_1222433_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_025913183.1\|1222536_1224507_-	catecholate siderophore receptor CirA	A0A0P0I887	Acinetobacter_phage	1.6e-12	35.9
WP_008500931.1\|1224731_1226201_-	amino acid permease	NA	NA	NA	NA
WP_008500932.1\|1226359_1227226_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_025913182.1\|1227323_1228370_+	YeiH family protein	NA	NA	NA	NA
WP_008500934.1\|1228434_1229292_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	6.2e-25	33.2
WP_008500935.1\|1229338_1231024_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_008500936.1\|1231040_1231979_-	1-phosphofructokinase	NA	NA	NA	NA
WP_008500937.1\|1231978_1233109_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_058654866.1\|1233470_1234652_+	sugar efflux transporter SetB	NA	NA	NA	NA
WP_021241515.1\|1234648_1234903_-	hypothetical protein	NA	NA	NA	NA
WP_008500940.1\|1235067_1235640_+	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_058654865.1\|1235757_1236948_-	mannonate dehydratase	NA	NA	NA	NA
WP_058654863.1\|1237151_1238618_+	fructuronate reductase	E5EQS6	Micromonas_sp._RCC1109_virus	5.8e-39	29.7
WP_058654861.1\|1238740_1239727_+	GTP-binding protein	NA	NA	NA	NA
WP_023325679.1\|1239748_1240474_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_008500946.1\|1240889_1241459_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	3.6e-13	38.9
WP_008500947.1\|1241586_1243143_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_008500948.1\|1243216_1245022_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_008500949.1\|1245031_1246126_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_058654856.1\|1246125_1247151_+	ABC transporter permease	NA	NA	NA	NA
WP_058654855.1\|1247152_1248742_+	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	2.7e-18	33.2
WP_008500952.1\|1248745_1249090_-	hypothetical protein	NA	NA	NA	NA
WP_058654853.1\|1249368_1250565_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	3.8e-20	22.3
WP_021241522.1\|1250580_1251288_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_126287266.1\|1251569_1253330_+	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	8.4e-101	42.0
WP_008500956.1\|1253455_1253740_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_008500957.1\|1253790_1254798_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	2.9e-82	48.6
WP_008500958.1\|1254932_1255160_+	YejL family protein	NA	NA	NA	NA
WP_087855223.1\|1255179_1256940_+	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_049015053.1\|1257194_1257515_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.8e-41	73.6
WP_126287265.1\|1257514_1257754_-	hypothetical protein	K7P7N3	Enterobacteria_phage	1.0e-38	94.9
WP_023294054.1\|1257854_1258121_+	DinI family protein	K7PKR6	Enterobacteria_phage	1.3e-37	92.0
WP_126287435.1\|1258162_1259371_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.9e-48	46.3
WP_126287310.1\|1259487_1260048_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	2.3e-84	84.3
WP_126287311.1\|1260553_1260787_+	hypothetical protein	NA	NA	NA	NA
WP_032248699.1\|1260767_1261178_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	4.9e-20	43.3
WP_126287312.1\|1261180_1261933_-	hypothetical protein	E5G6P0	Salmonella_phage	6.3e-05	38.5
WP_126287313.1\|1261984_1262578_-	YmfQ family protein	NA	NA	NA	NA
WP_126287314.1\|1262574_1263717_-\|plate	baseplate J/gp47 family protein	A0A0A8WEY6	Clostridium_phage	8.0e-12	34.8
WP_111986608.1\|1263718_1264156_-	hypothetical protein	B5TK74	Pseudomonas_phage	4.0e-12	45.8
WP_000900614.1\|1264152_1264695_-\|plate	baseplate assembly protein	A0A077KAY0	Edwardsiella_phage	5.9e-05	30.8
WP_001515585.1\|1264733_1265819_-	hypothetical protein	M1PVV2	Vibrio_phage	7.6e-44	31.5
WP_126287315.1\|1265815_1267219_-	hypothetical protein	NA	NA	NA	NA
WP_126287316.1\|1267289_1267856_-	hypothetical protein	NA	NA	NA	NA
WP_126287317.1\|1267903_1269787_-	lytic transglycosylase domain-containing protein	I6ZXX9	Escherichia_phage	8.3e-30	51.6
WP_126287318.1\|1269928_1270207_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000896638.1\|1270208_1270580_-\|tail	phage tail protein	NA	NA	NA	NA
WP_063928726.1\|1270583_1272086_-\|tail	phage tail protein	B5TK67	Pseudomonas_phage	4.6e-100	41.6
WP_049015412.1\|1272082_1272280_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_126287319.1\|1272283_1272829_-	ATP-binding protein	NA	NA	NA	NA
WP_000537794.1\|1272825_1273185_-	hypothetical protein	NA	NA	NA	NA
WP_047744272.1\|1273189_1273600_-	hypothetical protein	NA	NA	NA	NA
WP_023157311.1\|1273571_1274621_-\|capsid	major capsid protein	V5Q8G6	Xylella_phage	3.6e-51	33.7
WP_023294067.1\|1274718_1275123_-\|head	head decoration protein	NA	NA	NA	NA
WP_063927633.1\|1275122_1275692_-	hypothetical protein	NA	NA	NA	NA
WP_049015398.1\|1275693_1276560_-	S49 family peptidase	A0A248XD65	Klebsiella_phage	6.2e-49	46.0
WP_126287322.1\|1276556_1278194_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	4.3e-91	35.2
WP_000483309.1\|1278193_1278457_-	hypothetical protein	NA	NA	NA	NA
WP_063928728.1\|1278465_1280589_-\|terminase	terminase	A0A2K9V3X4	Faecalibacterium_phage	2.3e-97	35.9
WP_000210383.1\|1280530_1281100_-	hypothetical protein	NA	NA	NA	NA
WP_001472855.1\|1281390_1281894_+	hypothetical protein	NA	NA	NA	NA
WP_001472183.1\|1281904_1282543_-	hypothetical protein	A0A1W6JTE1	Pseudomonas_phage	1.1e-05	28.6
WP_001165319.1\|1282619_1283024_-	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_126287323.1\|1283056_1283518_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	2.7e-43	65.1
WP_000535562.1\|1283517_1284051_-	lysozyme	K7PM52	Enterobacteria_phage	2.5e-88	89.0
WP_000783336.1\|1284050_1284353_-	hypothetical protein	O64361	Escherichia_phage	5.4e-32	66.3
WP_126287324.1\|1284421_1285474_-	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	9.9e-174	81.4
WP_000116520.1\|1285683_1286088_-	hypothetical protein	NA	NA	NA	NA
WP_000016608.1\|1286087_1286843_-	hypothetical protein	NA	NA	NA	NA
WP_047744248.1\|1287312_1288005_-	antitermination protein	NA	NA	NA	NA
1287656:1287671	attL	NA	NA	NA	NA
WP_126287325.1\|1288026_1289088_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.3e-109	55.4
WP_126287327.1\|1289084_1289777_-	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	2.6e-58	54.6
WP_126287336.1\|1289880_1291218_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	3.1e-116	50.6
WP_023294082.1\|1291223_1292087_-	GntR family transcriptional regulator	U5P0A0	Shigella_phage	5.8e-39	83.9
WP_032676944.1\|1292076_1292256_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	6.6e-14	69.2
WP_032678779.1\|1292428_1292977_-	hypothetical protein	A0A1C9II13	Salmonella_phage	1.3e-68	68.7
WP_001515606.1\|1292999_1293215_-	hypothetical protein	NA	NA	NA	NA
WP_001515607.1\|1293314_1293941_+	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	1.2e-46	48.8
WP_023294084.1\|1294912_1295284_+	hypothetical protein	Q8HAA1	Salmonella_phage	2.9e-56	90.2
WP_023294085.1\|1295336_1296167_+	YfdQ family protein	A0A192Y6E5	Salmonella_phage	1.5e-116	77.2
WP_023294086.1\|1296302_1296842_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	9.2e-75	75.4
WP_016247400.1\|1296829_1297027_+	hypothetical protein	NA	NA	NA	NA
WP_126287329.1\|1297023_1297527_+	hypothetical protein	NA	NA	NA	NA
WP_023294088.1\|1297523_1297745_+	TraR/DksA family transcriptional regulator	A0A0P0ZCX5	Stx2-converting_phage	6.9e-13	55.1
WP_016247403.1\|1297751_1297964_+	hypothetical protein	NA	NA	NA	NA
WP_023294090.1\|1298493_1298715_+	hypothetical protein	K7PKM4	Enterobacterial_phage	1.0e-11	58.1
WP_023294091.1\|1298695_1299268_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	7.9e-93	82.4
WP_001515618.1\|1299312_1299522_+	hypothetical protein	NA	NA	NA	NA
WP_126287330.1\|1299524_1300706_+\|integrase	tyrosine-type recombinase/integrase	A0A2D1GN00	Marinobacter_phage	1.5e-32	30.2
WP_024189855.1\|1301084_1301498_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_001515622.1\|1301614_1301974_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
1301884:1301899	attR	NA	NA	NA	NA
WP_126287332.1\|1302354_1303542_-	MFS transporter	NA	NA	NA	NA
WP_008500962.1\|1303666_1303927_-	DUF2534 family protein	NA	NA	NA	NA
WP_008500963.1\|1304136_1304640_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_126287334.1\|1304733_1306383_-	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_008500965.1\|1306570_1307860_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	3.9e-79	48.4
WP_008500966.1\|1307822_1309259_-	magnesium transporter	NA	NA	NA	NA
WP_058654905.1\|1309449_1311093_-	multidrug ABC transporter permease/ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-10	23.2
WP_058654849.1\|1311162_1311819_-	DNA oxidative demethylase AlkB	NA	NA	NA	NA
WP_008500244.1\|1311818_1312877_-	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	2.6e-17	36.6
WP_008500243.1\|1312949_1314005_-	FAD:protein FMN transferase ApbE	NA	NA	NA	NA
WP_000019450.1\|1314548_1315529_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.8e-185	99.1

DBSCAN-SWA_4

1611616 : 1648781

Salmonella_phage(44.74%)

protease,head,terminase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_126287127.1\|1611616_1612528_-	hypothetical protein	A0A0M3ULD8	Salmonella_phage	8.1e-23	63.5
WP_126287128.1\|1612527_1613208_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	6.7e-99	75.2
WP_126287129.1\|1613204_1614404_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	1.8e-179	82.7
WP_087855373.1\|1614404_1614758_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	1.9e-44	75.2
WP_126287130.1\|1614761_1615400_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	2.0e-60	49.6
WP_126287131.1\|1615465_1616188_-	hypothetical protein	NA	NA	NA	NA
WP_126287132.1\|1616195_1617260_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.4e-138	66.6
WP_001160174.1\|1617262_1617568_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	9.2e-24	53.5
WP_000353819.1\|1617569_1618172_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	5.6e-65	70.1
WP_126287133.1\|1618171_1620382_-	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	3.9e-204	54.0
WP_000393957.1\|1620559_1620985_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	1.6e-37	57.5
WP_000257257.1\|1620988_1621429_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	7.5e-59	77.4
WP_126287134.1\|1621439_1622600_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.3e-158	74.9
WP_126287157.1\|1622603_1623167_-	hypothetical protein	A0A0M4R331	Salmonella_phage	1.9e-83	78.0
WP_001142474.1\|1623141_1623531_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	97.7
WP_126287135.1\|1623517_1624072_-	hypothetical protein	A0A0M4S631	Salmonella_phage	7.2e-83	86.4
WP_126287136.1\|1624068_1624476_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	98.5
WP_059365116.1\|1624441_1624810_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	3.6e-54	89.3
WP_108961697.1\|1624851_1625793_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	1.0e-174	96.8
WP_006120173.1\|1625804_1626308_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	4.2e-74	83.8
WP_126287137.1\|1626312_1627545_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	6.9e-211	93.2
WP_049040992.1\|1627541_1627742_-	hypothetical protein	NA	NA	NA	NA
WP_123260981.1\|1627756_1628494_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	1.5e-107	95.0
WP_109867077.1\|1628381_1629848_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.9e-268	94.7
WP_126287138.1\|1629847_1631470_-	TerL protein	A0A0M5M1R6	Salmonella_phage	5.2e-307	94.3
WP_039265766.1\|1631472_1632045_-\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	1.8e-60	67.9
WP_126287139.1\|1632103_1632640_-	hypothetical protein	K7P6W1	Enterobacteria_phage	9.1e-59	78.1
WP_126287140.1\|1632639_1633212_-	lysozyme	K7P7Q3	Enterobacteria_phage	1.0e-95	88.9
WP_016150496.1\|1633183_1633462_-	hypothetical protein	K7P6H9	Enterobacteria_phage	1.1e-44	98.9
WP_126287141.1\|1633941_1634376_-	antitermination protein Q	B6SD39	Bacteriophage	9.1e-41	61.4
WP_126287142.1\|1634657_1636850_-	replication protein	B6SCY1	Bacteriophage	5.4e-174	71.3
WP_104877621.1\|1636853_1637054_-	transcriptional regulator	K7RWG7	Bacteriophage	7.9e-08	51.8
WP_126287143.1\|1637195_1637870_+	helix-turn-helix transcriptional regulator	B6SCU0	Bacteriophage	1.6e-60	51.6
WP_048029992.1\|1638300_1638813_+	hypothetical protein	C9EH97	Sodalis_phage	9.7e-42	51.2
WP_126287144.1\|1639083_1640004_+	hypothetical protein	NA	NA	NA	NA
WP_126287145.1\|1640006_1641308_+	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	9.8e-139	57.3
WP_126287146.1\|1641322_1641871_+	DUF2815 family protein	Q775A5	Bordetella_phage	6.5e-68	66.5
WP_052895624.1\|1641915_1642107_+	hypothetical protein	NA	NA	NA	NA
WP_096753894.1\|1642103_1642940_+\|protease	serine protease	V5KSK5	Escherichia_phage	4.7e-94	73.3
WP_126287147.1\|1643015_1645082_+	DNA polymerase	Q775A3	Bordetella_phage	2.1e-276	68.1
WP_126287148.1\|1645146_1645908_+	nucleotide-binding protein	NA	NA	NA	NA
WP_126287149.1\|1645969_1646185_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_126287150.1\|1646181_1646370_+	hypothetical protein	NA	NA	NA	NA
WP_126287151.1\|1646374_1646650_+	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	1.4e-26	67.1
WP_126287152.1\|1646646_1647354_-	hypothetical protein	NA	NA	NA	NA
WP_126287153.1\|1647386_1648781_+	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	2.9e-213	73.7

DBSCAN-SWA_5

1662203 : 1774917

114

Salmonella_phage(59.02%)

tRNA,head,terminase,plate,integrase,protease,portal,tail,lysis,capsid,transposase

attL 1663913:1663928|attR 1761302:1761317

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032675352.1\|1662203_1662941_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_008502189.1\|1663073_1664402_+	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.8e-47	33.2
1663913:1663928	attL	NA	NA	NA	NA
WP_008502190.1\|1664455_1664839_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	2.8e-33	71.8
WP_008502191.1\|1665153_1665843_+	uracil-DNA glycosylase	A0A1R3T3N6	Sphenicid_alphaherpesvirus	1.0e-54	50.0
WP_008502192.1\|1665883_1666984_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_008502193.1\|1667188_1667608_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	9.1e-14	40.2
WP_008502194.1\|1667677_1668376_+	DTW domain-containing protein	NA	NA	NA	NA
WP_126287156.1\|1668411_1671075_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_008502196.1\|1671185_1672541_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_008502197.1\|1672586_1672910_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_008502198.1\|1672906_1674202_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.0e-43	29.0
WP_008502466.1\|1679813_1682387_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.9e-127	35.2
WP_023344708.1\|1682516_1683248_-	polyphenol oxidase	NA	NA	NA	NA
WP_058654398.1\|1683244_1684225_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_008502469.1\|1684356_1685094_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_008502470.1\|1685362_1685704_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_102000890.1\|1685815_1685863_+	hypothetical protein	NA	NA	NA	NA
WP_126287306.1\|1685970_1687131_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_058654396.1\|1687127_1688000_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_008502473.1\|1688060_1689182_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_008502474.1\|1689192_1690263_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.2e-89	51.5
WP_058654395.1\|1690477_1690852_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_008502476.1\|1690945_1691542_+	YfiR family protein	NA	NA	NA	NA
WP_008502478.1\|1692765_1693251_+	OmpA family protein	NA	NA	NA	NA
WP_058654394.1\|1693253_1694624_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_058654393.1\|1694648_1695068_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_002914145.1\|1695200_1695548_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_008502493.1\|1695591_1696359_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_021241995.1\|1696390_1696930_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003863133.1\|1696945_1697194_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_008502496.1\|1697310_1698672_-	signal recognition particle protein	NA	NA	NA	NA
WP_032623031.1\|1698838_1699630_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_025759264.1\|1699648_1700935_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_008502499.1\|1700987_1701581_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_008502500.1\|1701703_1702582_+	NAD(+) kinase	NA	NA	NA	NA
WP_058654392.1\|1702667_1704329_+	DNA repair protein RecN	NA	NA	NA	NA
WP_008502502.1\|1704467_1704806_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_008502503.1\|1704914_1705202_-	RnfH family protein	NA	NA	NA	NA
WP_023325904.1\|1705191_1705668_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_008502505.1\|1705785_1706268_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
WP_103786876.1\|1706847_1707330_+	hypothetical protein	Q19UP0	Mannheimia_phage	2.3e-16	32.5
WP_103786877.1\|1707356_1707575_-	levansucrase regulator	Q53ZE7	Salmonella_virus	9.8e-28	76.4
WP_103786878.1\|1707641_1708742_-	phage late control D family protein	E5G6Q3	Salmonella_phage	5.3e-186	91.8
WP_103786879.1\|1708738_1709224_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.5e-72	93.2
WP_103786880.1\|1709220_1712001_-\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	5.3e-118	39.6
WP_000763315.1\|1711993_1712113_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_001528658.1\|1712127_1712430_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.0e-43	96.0
WP_024552851.1\|1712484_1713000_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	5.1e-91	98.2
WP_103786881.1\|1713009_1714182_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.0e-211	93.3
WP_126287305.1\|1714571_1715576_+	hypothetical protein	NA	NA	NA	NA
WP_023293622.1\|1715800_1716223_-	hypothetical protein	NA	NA	NA	NA
WP_103786883.1\|1716231_1717536_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	2.2e-122	73.6
WP_102063550.1\|1717532_1718138_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.1e-113	96.5
WP_103786884.1\|1718130_1719039_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	5.9e-143	90.4
WP_023306992.1\|1719025_1719385_-\|plate	phage baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.3e-56	93.3
WP_103786885.1\|1719381_1719960_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	6.3e-106	96.4
WP_126287304.1\|1720028_1720475_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	9.3e-65	87.7
WP_103786887.1\|1720467_1720899_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.2e-74	97.9
WP_013098791.1\|1720994_1721420_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	8.5e-68	98.6
WP_126287303.1\|1721419_1721797_-	peptidase	A0A1S6KZZ2	Salmonella_phage	3.4e-60	96.8
WP_080154439.1\|1721801_1722311_-	lysozyme	A0A1S6KZY9	Salmonella_phage	9.8e-95	99.4
WP_000171565.1\|1722291_1722507_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_000868184.1\|1722510_1722714_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_103786888.1\|1722713_1723178_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.2e-83	96.8
WP_103786889.1\|1723271_1723922_-\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.3e-112	98.1
WP_126287302.1\|1723925_1724987_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.5e-193	98.6
WP_024552864.1\|1725003_1725837_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	5.5e-127	97.5
WP_103786891.1\|1725979_1727746_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	94.4
WP_103786892.1\|1727745_1728453_+\|terminase	terminase-like family protein	E5FFI8	Burkholderia_phage	6.9e-22	31.3
WP_061068629.1\|1728449_1729505_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	6.2e-176	89.6
WP_103786893.1\|1729799_1730642_-	hypothetical protein	A0A0M4R2T6	Salmonella_phage	3.2e-58	47.3
WP_032706396.1\|1730641_1730860_-	hypothetical protein	NA	NA	NA	NA
WP_001217561.1\|1731146_1731380_-	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
WP_048977490.1\|1731391_1731580_-	hypothetical protein	A0A1S6L006	Salmonella_phage	1.4e-25	96.8
WP_103786894.1\|1731741_1734150_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.6
WP_103786895.1\|1735000_1735228_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	93.3
WP_001744223.1\|1735227_1735461_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	5.4e-24	80.5
WP_013098807.1\|1735528_1735870_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	7.6e-51	85.8
WP_015386352.1\|1735833_1736034_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	8.7e-31	90.9
WP_103786896.1\|1736041_1736551_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.2e-84	94.1
WP_103786897.1\|1736583_1736826_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	5.8e-37	93.8
WP_103786898.1\|1736945_1737578_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	5.3e-106	90.5
WP_103786899.1\|1737579_1738605_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	8.9e-196	95.6
WP_152164572.1\|1738849_1739971_+	hypothetical protein	NA	NA	NA	NA
WP_001395480.1\|1739976_1741008_-\|transposase	IS630-like element ISEc33 family transposase	NA	NA	NA	NA
WP_121528189.1\|1741162_1741708_+	hypothetical protein	NA	NA	NA	NA
WP_078309422.1\|1741710_1742772_+	hypothetical protein	NA	NA	NA	NA
WP_078309424.1\|1743313_1743889_+	recombinase family protein	M9Q1K0	Clostridium_phage	1.2e-32	45.5
WP_126287422.1\|1743893_1745261_+	hypothetical protein	NA	NA	NA	NA
WP_152164571.1\|1745546_1746527_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	1.2e-184	98.5
WP_001549565.1\|1746895_1748137_+\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	6.7e-105	48.3
WP_094169092.1\|1748326_1749343_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_057064095.1\|1750563_1751184_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_001118619.1\|1752262_1753186_+\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_047363791.1\|1753613_1753841_+	hypothetical protein	NA	NA	NA	NA
WP_000643630.1\|1754062_1754344_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000350435.1\|1754378_1754948_+	small heat shock protein sHSP20	NA	NA	NA	NA
WP_047363789.1\|1755053_1757903_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	1.5e-128	41.2
WP_001446316.1\|1757902_1758094_+	hypothetical protein	NA	NA	NA	NA
WP_047363787.1\|1758154_1759969_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	C7U047	Ostreococcus_tauri_virus	8.6e-101	40.8
WP_126287392.1\|1760056_1760515_+	small heat shock protein sHSP20-GI	NA	NA	NA	NA
WP_057064085.1\|1760537_1761452_+	heat resistance protein YfdX1	NA	NA	NA	NA
1761302:1761317	attR	NA	NA	NA	NA
WP_047363781.1\|1761554_1762442_+	heat resistance protein YfdX2	NA	NA	NA	NA
WP_047363779.1\|1762531_1763143_+	heat resistance membrane protein HdeD-GI	NA	NA	NA	NA
WP_047363777.1\|1763222_1764368_+	hypothetical protein	NA	NA	NA	NA
WP_000786816.1\|1764357_1764798_+	heat resistance system thioredoxin Trx-GI	A0A1J0GW78	Streptomyces_phage	4.5e-11	37.2
WP_115601466.1\|1764801_1766517_+	heat resistance system K+/H+ antiporter KefB-GI	NA	NA	NA	NA
WP_126287391.1\|1766513_1767011_+	heat resistance protein PsiE-GI	NA	NA	NA	NA
WP_003847784.1\|1767982_1769134_+\|protease	trypsin-like serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	9.9e-26	30.3
WP_008786790.1\|1769413_1770952_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-278	93.8
WP_000612626.1\|1771000_1771348_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000839182.1\|1771344_1771749_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
WP_126287439.1\|1771826_1772801_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	3.0e-92	57.0
WP_001189109.1\|1773408_1774917_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-43	31.6

DBSCAN-SWA_6

2074653 : 2146271

Staphylococcus_phage(60.0%)

tRNA,protease,transposase,integrase

attL 2121723:2121764|attR 2149161:2149202

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001118619.1\|2074653_2075577_-\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_044597673.1\|2075730_2076741_+	fimbrial protein	NA	NA	NA	NA
WP_058653976.1\|2076758_2078492_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_152164568.1\|2078506_2079061_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_001395480.1\|2079144_2080176_+\|transposase	IS630-like element ISEc33 family transposase	NA	NA	NA	NA
WP_008499744.1\|2087973_2089950_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_127312443.1\|2089958_2090090_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_045335271.1\|2090444_2090615_-	hypothetical protein	NA	NA	NA	NA
WP_008499745.1\|2090753_2091908_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.1e-128	63.4
WP_008499747.1\|2092349_2093747_+	sugar porter family MFS transporter	NA	NA	NA	NA
WP_058653978.1\|2093805_2094303_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_021242074.1\|2094397_2095105_+	deoxyribonuclease I	NA	NA	NA	NA
WP_021242075.1\|2095156_2095888_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_008499751.1\|2095907_2096855_+	glutathione synthase	NA	NA	NA	NA
WP_008499752.1\|2096937_2097498_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_021242076.1\|2097497_2097914_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_058653980.1\|2097924_2098905_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_008499756.1\|2098922_2099624_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_008499757.1\|2099645_2100212_+	YggT family protein	NA	NA	NA	NA
WP_008499758.1\|2100208_2100505_+	YggU family protein	NA	NA	NA	NA
WP_032653325.1\|2100508_2101102_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_045416357.1\|2101094_2102243_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_008499762.1\|2102427_2103144_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_003862421.1\|2103200_2103527_-	DUF469 domain-containing protein	NA	NA	NA	NA
WP_023294526.1\|2103526_2104246_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_021242081.1\|2104384_2105443_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_008499765.1\|2105469_2105742_+	oxidative damage protection protein	NA	NA	NA	NA
WP_021242082.1\|2105866_2106943_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_008499767.1\|2107161_2108418_+	nucleoside permease	NA	NA	NA	NA
WP_058653981.1\|2108497_2109301_-	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA
WP_045371290.1\|2109278_2109818_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
WP_045371292.1\|2109814_2111338_-	citrate lyase subunit alpha	NA	NA	NA	NA
WP_023326048.1\|2111348_2112224_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA
WP_058653982.1\|2112220_2112514_-	citrate lyase acyl carrier protein	NA	NA	NA	NA
WP_058653983.1\|2112530_2113553_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA
WP_021242089.1\|2113566_2114430_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_021242090.1\|2114447_2115809_-	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA
WP_123260983.1\|2116270_2117779_+	sensor histidine kinase	NA	NA	NA	NA
WP_023326051.1\|2117768_2118461_+	response regulator	NA	NA	NA	NA
WP_058653985.1\|2118549_2120685_-	ornithine decarboxylase	NA	NA	NA	NA
WP_008499781.1\|2120867_2121581_+	DUF554 domain-containing protein	NA	NA	NA	NA
2121723:2121764	attL	NA	NA	NA	NA
WP_126287271.1\|2122510_2125243_+	AAA family ATPase	NA	NA	NA	NA
WP_126287272.1\|2126316_2127513_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DTG6	Proteus_phage	9.0e-14	24.4
WP_126287283.1\|2127557_2129114_-	DUF927 domain-containing protein	NA	NA	NA	NA
WP_126287273.1\|2129514_2130372_-\|integrase	site-specific integrase	A0A1J0MFS3	Staphylococcus_phage	1.3e-09	26.8
WP_126287274.1\|2130685_2131906_-	hypothetical protein	NA	NA	NA	NA
WP_126287275.1\|2131982_2132357_+	hypothetical protein	NA	NA	NA	NA
WP_126287276.1\|2132360_2132795_+	hypothetical protein	NA	NA	NA	NA
WP_126287284.1\|2132916_2133330_+	DUF2787 domain-containing protein	NA	NA	NA	NA
WP_126287285.1\|2133370_2133832_+	hypothetical protein	NA	NA	NA	NA
WP_126287277.1\|2133810_2134050_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_126287278.1\|2134144_2134537_+	hypothetical protein	NA	NA	NA	NA
WP_126287279.1\|2134585_2135482_-	ferrous iron transporter B	NA	NA	NA	NA
WP_060617892.1\|2135481_2135889_-	hypothetical protein	NA	NA	NA	NA
WP_126287280.1\|2135869_2136808_-	WYL domain-containing protein	A0A0R6PH67	Moraxella_phage	4.7e-34	29.0
WP_047355160.1\|2137225_2138782_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	4.9e-105	42.7
WP_126287281.1\|2138778_2140008_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_126287282.1\|2140130_2143247_+	HsdR family type I site-specific deoxyribonuclease	NA	NA	NA	NA
WP_047355154.1\|2143358_2144168_-	hypothetical protein	NA	NA	NA	NA
WP_122008382.1\|2144681_2146271_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2149161:2149202	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2168016 : 2226661

Staphylococcus_phage(18.18%)

transposase,integrase

attL 2212449:2212463|attR 2232685:2232699

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001118619.1\|2168016_2168940_-\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_021544648.1\|2169230_2170208_-	5'-nucleotidase	NA	NA	NA	NA
WP_001395480.1\|2170274_2171306_-\|transposase	IS630-like element ISEc33 family transposase	NA	NA	NA	NA
WP_001189109.1\|2171952_2173461_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-43	31.6
WP_152164567.1\|2173769_2174180_+	hypothetical protein	NA	NA	NA	NA
WP_063615651.1\|2174571_2175723_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.4
WP_152164566.1\|2176144_2176849_-	HrgA protein	NA	NA	NA	NA
WP_001118619.1\|2177048_2177972_+\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_008503143.1\|2178046_2178430_-	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_008503144.1\|2178432_2179095_-	DedA family protein	NA	NA	NA	NA
WP_008503145.1\|2179439_2180216_-	transcriptional regulator ExuR	NA	NA	NA	NA
WP_008503146.1\|2180396_2181695_-	MFS transporter	NA	NA	NA	NA
WP_045407019.1\|2182170_2183583_+	glucuronate isomerase	NA	NA	NA	NA
WP_058655028.1\|2183600_2185088_+	altronate dehydratase	NA	NA	NA	NA
WP_008503149.1\|2185174_2186416_-	serine/threonine transporter SstT	NA	NA	NA	NA
WP_021242367.1\|2186671_2187637_-	TerC family protein	A0A291LBC5	Escherichia_phage	3.3e-35	32.5
WP_058655029.1\|2187888_2188887_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_008503152.1\|2188957_2189461_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_008503153.1\|2189544_2190681_+	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
WP_008503154.1\|2190771_2192793_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_008503155.1\|2192978_2194559_-	autoinducer-2 kinase	NA	NA	NA	NA
WP_008503156.1\|2194592_2195564_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_008503157.1\|2195779_2197267_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	7.5e-18	29.3
WP_008503158.1\|2197263_2198295_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_058655031.1\|2198295_2199273_+	autoinducer 2 import system permease LsrD	NA	NA	NA	NA
WP_025912529.1\|2199274_2200276_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_058655033.1\|2200287_2201175_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_008503162.1\|2201171_2201465_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_045351630.1\|2201566_2201854_-	hypothetical protein	NA	NA	NA	NA
WP_084831996.1\|2201863_2202583_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_023294617.1\|2202575_2203106_-	fimbrial protein	NA	NA	NA	NA
WP_008503166.1\|2203115_2203661_-	fimbrial protein	NA	NA	NA	NA
WP_126287346.1\|2203671_2204679_-	fimbrial protein	NA	NA	NA	NA
WP_023294615.1\|2204679_2207307_-	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_008503169.1\|2207384_2208092_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_021242352.1\|2208137_2208671_-	fimbrial protein	NA	NA	NA	NA
WP_008503171.1\|2208743_2209286_-	fimbrial protein BcfA	NA	NA	NA	NA
WP_084635675.1\|2209797_2211204_-	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	7.8e-33	27.6
WP_008503173.1\|2211613_2213134_+	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	1.4e-32	47.8
2212449:2212463	attL	NA	NA	NA	NA
WP_039024806.1\|2213471_2215031_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.9e-12	30.1
WP_021242349.1\|2215027_2215522_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_087855182.1\|2215669_2216434_+	siderophore-interacting protein	NA	NA	NA	NA
WP_023326128.1\|2216434_2217604_-	molecular chaperone DnaJ	NA	NA	NA	NA
WP_110915166.1\|2218093_2218345_-	DUF2542 family protein	NA	NA	NA	NA
WP_058653842.1\|2218829_2219540_-	hypothetical protein	NA	NA	NA	NA
WP_058653843.1\|2220573_2221386_-	hypothetical protein	NA	NA	NA	NA
WP_058653844.1\|2221387_2221978_-	phage repressor protein CI	F1BUS8	Erwinia_phage	7.5e-30	38.9
WP_088581786.1\|2222646_2223794_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.0e-147	92.6
WP_058653846.1\|2223869_2224319_+	hypothetical protein	NA	NA	NA	NA
WP_058653847.1\|2224325_2225006_+	hypothetical protein	Q3LZN7	Bacteriophage	1.1e-21	51.5
WP_126287406.1\|2225344_2226661_+\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	2.0e-35	30.4
2232685:2232699	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2434862 : 2508195

uncultured_Caudovirales_phage(52.63%)

tRNA,head,terminase,protease,portal,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055321273.1\|2434862_2437718_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.3e-140	36.7
WP_008502817.1\|2437841_2438345_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_008502818.1\|2438428_2439448_+	NAD(P)-dependent alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.9e-44	31.0
WP_008502819.1\|2439491_2441132_-	DAK2 domain-containing protein	NA	NA	NA	NA
WP_126287206.1\|2441269_2442772_+	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	2.2e-81	43.8
WP_102000900.1\|2442751_2443693_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	3.4e-16	34.4
WP_023326177.1\|2444380_2448841_+	glutamate synthase large subunit	NA	NA	NA	NA
WP_008502824.1\|2448850_2450269_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_023294675.1\|2450450_2451011_-	outer membrane protein	NA	NA	NA	NA
WP_008502826.1\|2451007_2453422_-	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_058655010.1\|2453437_2454142_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_008502828.1\|2454262_2454940_-	DUF1120 domain-containing protein	NA	NA	NA	NA
WP_025912562.1\|2455390_2455888_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.1e-26	55.8
WP_008502830.1\|2455893_2456532_-	stringent starvation protein A	NA	NA	NA	NA
WP_003860436.1\|2456840_2457233_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_003860434.1\|2457248_2457677_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_008502831.1\|2457976_2459101_-	cell division protein ZapE	NA	NA	NA	NA
WP_008502832.1\|2459290_2459689_+	DUF1043 family protein	NA	NA	NA	NA
WP_126287207.1\|2459860_2461228_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	1.3e-21	26.1
WP_008502834.1\|2461319_2462387_+	outer membrane-stress sensor serine endopeptidase DegS	NA	NA	NA	NA
WP_008502835.1\|2462443_2463382_-	malate dehydrogenase	NA	NA	NA	NA
WP_008502836.1\|2463779_2464250_+	transcriptional regulator ArgR	NA	NA	NA	NA
WP_008502837.1\|2464625_2464889_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_008502838.1\|2464999_2465266_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_008502839.1\|2465327_2465600_-	hypothetical protein	NA	NA	NA	NA
WP_008502840.1\|2465645_2467100_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_008502841.1\|2467190_2469158_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_045337040.1\|2469163_2470096_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_003860416.1\|2470103_2470307_-	AaeX family protein	NA	NA	NA	NA
WP_008502843.1\|2470486_2471413_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_058655008.1\|2471632_2472247_+	YagU family protein	NA	NA	NA	NA
WP_021242283.1\|2472292_2473738_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_058655007.1\|2473822_2477620_-	AsmA2 domain-containing protein	NA	NA	NA	NA
WP_008502847.1\|2477661_2479131_-	ribonuclease G	NA	NA	NA	NA
WP_126287208.1\|2479120_2479714_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_008502849.1\|2479723_2480212_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_008502850.1\|2480211_2481228_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_000913396.1\|2481290_2482334_-	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_008502851.1\|2482616_2484557_-	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_008502852.1\|2484739_2485714_+	oxidoreductase	NA	NA	NA	NA
WP_058655006.1\|2485791_2486793_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_008502854.1\|2486793_2487393_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_008502855.1\|2487627_2488080_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_008502856.1\|2488101_2488566_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_003860388.1\|2488576_2489926_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_021242290.1\|2490034_2490277_+	YhdT family protein	NA	NA	NA	NA
WP_008502858.1\|2490266_2491718_+	sodium/pantothenate symporter	NA	NA	NA	NA
WP_008502859.1\|2491729_2492611_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_021242291.1\|2492738_2493479_+	carbonic anhydrase family protein	NA	NA	NA	NA
WP_008502861.1\|2493809_2494775_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_000462905.1\|2494798_2495095_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_001549737.1\|2495248_2495440_-	hypothetical protein	NA	NA	NA	NA
WP_126287209.1\|2495442_2497104_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.2
WP_085178567.1\|2497087_2497444_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-60	98.3
WP_023293255.1\|2497719_2498163_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.1e-78	93.2
WP_001547824.1\|2498162_2498462_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150961.1\|2498458_2498794_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_046275060.1\|2498790_2500032_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	3.2e-232	97.0
WP_001547826.1\|2500033_2500594_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_001549743.1\|2500645_2501812_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_004150963.1\|2502075_2502588_+	hypothetical protein	NA	NA	NA	NA
WP_004150964.1\|2502636_2502972_-	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|2503314_2505450_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_126287211.1\|2505449_2505815_-	hypothetical protein	NA	NA	NA	NA
WP_126287212.1\|2505811_2506180_-	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	4.8e-51	82.0
WP_126287213.1\|2506176_2506449_-	transcriptional regulator	NA	NA	NA	NA
WP_126287214.1\|2506441_2506654_-	hypothetical protein	NA	NA	NA	NA
WP_126287216.1\|2506646_2507327_-	host cell division inhibitor Icd-like protein	A0A2H4JGN8	uncultured_Caudovirales_phage	3.0e-46	92.7
WP_071284456.1\|2507415_2508195_-	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5

DBSCAN-SWA_9

3402843 : 3425659

Shigella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152164583.1\|3402843_3404051_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.3e-102	63.0
WP_126287393.1\|3404357_3406214_-	elongation factor 4	A0A2K9L6L3	Tupanvirus	1.7e-19	39.5
WP_126287394.1\|3406590_3406812_-	MFS transporter	NA	NA	NA	NA
WP_126287395.1\|3406916_3407147_-	MFS transporter	NA	NA	NA	NA
WP_126287396.1\|3407936_3409316_-	porin	NA	NA	NA	NA
WP_126287397.1\|3410033_3411299_-	MFS transporter	NA	NA	NA	NA
WP_126287398.1\|3411340_3413464_-	alpha-galactosidase	NA	NA	NA	NA
WP_126287399.1\|3413574_3414573_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_126287400.1\|3415687_3416200_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_126287401.1\|3416265_3417696_-	glycoside hydrolase family 32 protein	NA	NA	NA	NA
WP_094169092.1\|3418508_3419525_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_000156884.1\|3419736_3420759_+\|transposase	IS110-like element IS5708 family transposase	NA	NA	NA	NA
WP_000427614.1\|3421093_3422098_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_126287425.1\|3422587_3422923_+	protein secretion chaperonin CsaA	NA	NA	NA	NA
WP_003030308.1\|3423019_3424258_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001572362.1\|3424636_3425659_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

3489551 : 3552154

uncultured_Caudovirales_phage(44.44%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008502917.1\|3489551_3490811_+\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	8.0e-05	25.1
WP_008502916.1\|3490813_3491818_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_003855996.1\|3491889_3492087_+	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_006178975.1\|3492191_3493490_+	adenylosuccinate synthase	W5S5V7	Pithovirus	4.9e-66	35.4
WP_023293453.1\|3493682_3494108_+	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_008502912.1\|3494146_3496588_+	ribonuclease R	Q0GXV6	Lactococcus_phage	2.4e-66	32.5
WP_058653824.1\|3496654_3497386_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_023293450.1\|3497477_3498752_-	MFS transporter	NA	NA	NA	NA
WP_058653825.1\|3498946_3500569_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_058653826.1\|3500565_3502497_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.3e-16	33.1
WP_008502907.1\|3502669_3502945_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_023616161.1\|3503093_3503423_-	biofilm peroxide resistance protein BsmA	NA	NA	NA	NA
WP_058653827.1\|3503560_3504283_+	esterase	NA	NA	NA	NA
WP_008502904.1\|3504279_3505035_-	HTH-type transcriptional regulator UlaR	NA	NA	NA	NA
WP_006810379.1\|3505144_3506209_-	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA
WP_021240705.1\|3506568_3507969_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_003856022.1\|3507981_3508287_+	PTS ascorbate transporter subunit IIB	NA	NA	NA	NA
WP_058653828.1\|3508296_3508764_+	PTS ascorbate transporter subunit IIA	NA	NA	NA	NA
WP_058653829.1\|3508776_3509427_+	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA
WP_126287261.1\|3509436_3510297_+	L-ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA
WP_025911930.1\|3510289_3510976_+	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_058653830.1\|3511116_3511392_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_008502896.1\|3511730_3512126_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_008502895.1\|3512132_3512447_+	primosomal replication protein N	NA	NA	NA	NA
WP_000135199.1\|3512451_3512679_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_008502894.1\|3512720_3513170_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_126287260.1\|3513238_3513883_-	hypothetical protein	NA	NA	NA	NA
WP_085929690.1\|3514077_3514737_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_058654307.1\|3515049_3516459_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
WP_058654306.1\|3516545_3517208_-	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA
WP_058654305.1\|3517452_3519102_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.4e-11	30.2
WP_025911935.1\|3519189_3520155_-	DMT family transporter	NA	NA	NA	NA
WP_058654304.1\|3520230_3521055_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_058654303.1\|3521136_3521985_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_008502885.1\|3522069_3522456_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000227969.1\|3524241_3525318_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_008501432.1\|3526055_3526796_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_008501431.1\|3526789_3527347_-	YtfJ family protein	NA	NA	NA	NA
WP_008501430.1\|3527671_3527878_+	DUF1107 domain-containing protein	NA	NA	NA	NA
WP_008501429.1\|3527947_3529285_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_008501428.1\|3529496_3530138_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_008501426.1\|3530362_3532096_+	autotransporter assembly complex protein TamA	NA	NA	NA	NA
WP_126287405.1\|3532092_3535869_+	autotransporter assembly complex protein TamB	NA	NA	NA	NA
WP_008501424.1\|3535871_3536216_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_045415447.1\|3536532_3537003_-	hypothetical protein	NA	NA	NA	NA
WP_058654300.1\|3536999_3537584_-	hypothetical protein	NA	NA	NA	NA
WP_001118619.1\|3537838_3538762_+\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_152164562.1\|3538803_3540327_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.4e-10	27.8
WP_058654298.1\|3540411_3541413_-	sugar ABC transporter permease YjfF	NA	NA	NA	NA
WP_008501420.1\|3541399_3542422_-	ABC transporter permease	NA	NA	NA	NA
WP_058654299.1\|3542435_3543938_-	sugar ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	2.0e-10	28.8
WP_021240696.1\|3544043_3545000_-	galactofuranose ABC transporter substrate-binding protein YtfQ	NA	NA	NA	NA
WP_008501423.1\|3545309_3545840_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	4.2e-56	63.3
WP_001118619.1\|3545950_3546874_-\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_008501417.1\|3546994_3547351_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_008501416.1\|3547501_3548500_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.6e-69	42.1
WP_025911962.1\|3548697_3550077_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_008501414.1\|3550154_3550706_-	ribosome-associated protein	NA	NA	NA	NA
WP_058654296.1\|3550801_3552154_+\|protease	metalloprotease PmbA	NA	NA	NA	NA

DBSCAN-SWA_11

3849817 : 3868857

uncultured_Caudovirales_phage(71.43%)

head,integrase,protease,portal,tail,capsid

attL 3854222:3854238|attR 3866450:3866466

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058654202.1\|3849817_3851386_+	multicopper oxidase CueO	A0A0C6DWA2	Mamastrovirus	1.1e-19	56.5
WP_058654201.1\|3851472_3853863_-	glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase	NA	NA	NA	NA
3854222:3854238	attL	NA	NA	NA	NA
WP_126287082.1\|3854259_3855477_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	4.9e-132	58.5
WP_126287081.1\|3855473_3856322_+	hypothetical protein	NA	NA	NA	NA
WP_126287080.1\|3856533_3856818_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_155685403.1\|3856825_3857536_+	DNA-binding protein	A0A1I9KFA9	Aeromonas_phage	3.3e-48	50.2
WP_126287090.1\|3858023_3858242_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.7e-33	93.1
WP_126287079.1\|3858234_3858420_+	hypothetical protein	A0A2H4JFH8	uncultured_Caudovirales_phage	6.8e-22	90.2
WP_126287078.1\|3858412_3858634_+	aminotransferase	A0A2H4JBA1	uncultured_Caudovirales_phage	1.7e-11	55.6
WP_126287077.1\|3858630_3858999_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	2.8e-59	94.3
WP_126287076.1\|3858995_3859361_+	hypothetical protein	NA	NA	NA	NA
WP_126287075.1\|3859360_3861040_+\|integrase	integrase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.8e-39	67.3
WP_126287074.1\|3861617_3861878_+	hypothetical protein	NA	NA	NA	NA
WP_126287073.1\|3861912_3862383_-	hypothetical protein	NA	NA	NA	NA
WP_126287072.1\|3862648_3863818_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.1e-157	75.1
WP_126287071.1\|3863866_3864427_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-96	93.5
WP_126287070.1\|3864428_3865673_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	2.6e-234	97.3
WP_048977713.1\|3865665_3865965_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	7.6e-39	78.8
WP_023293251.1\|3866532_3867069_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	4.6e-18	34.0
3866450:3866466	attR	NA	NA	NA	NA
WP_008501947.1\|3867160_3867823_-	carbonate dehydratase	NA	NA	NA	NA
WP_008501946.1\|3867930_3868857_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.3e-22	32.3

DBSCAN-SWA_12

3979224 : 4001564

Streptococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001118619.1\|3979224_3980148_-\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_021242883.1\|3980339_3981443_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.7e-59	39.7
WP_058654073.1\|3981454_3982708_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.8e-97	46.6
WP_007777710.1\|3983281_3983623_-	YkfI toxin protein	NA	NA	NA	NA
WP_007777712.1\|3983643_3983961_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_007777714.1\|3983981_3984203_-	DUF987 domain-containing protein	NA	NA	NA	NA
WP_000811693.1\|3984211_3984688_-	RadC family protein	NA	NA	NA	NA
WP_126287411.1\|3984703_3985162_-	antirestriction protein	A9J566	Pseudomonas_phage	1.5e-14	32.8
WP_000194654.1\|3985259_3985499_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_001385283.1\|3985575_3986043_-	hypothetical protein	NA	NA	NA	NA
WP_126287412.1\|3986065_3986509_-	hypothetical protein	NA	NA	NA	NA
WP_001144031.1\|3986508_3986745_-	hypothetical protein	NA	NA	NA	NA
WP_000189411.1\|3986785_3987487_-	WYL domain-containing protein	NA	NA	NA	NA
WP_000197387.1\|3987703_3988525_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.1e-46	39.1
WP_127472377.1\|3988616_3989480_-	GTPase family protein	NA	NA	NA	NA
WP_152164561.1\|3989601_3989991_-	hypothetical protein	NA	NA	NA	NA
WP_001118619.1\|3991013_3991937_+\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_034493089.1\|3992476_3993055_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_126287434.1\|3993176_3993383_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000227969.1\|3993844_3994921_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001189109.1\|3995462_3996971_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-43	31.6
WP_001254932.1\|3998133_3999285_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_001547737.1\|3999204_3999555_-\|transposase	transposase	Q716C1	Shigella_phage	5.2e-39	97.7
WP_126287435.1\|4000355_4001564_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.9e-48	46.3

DBSCAN-SWA_13

4161754 : 4273639

107

Planktothrix_phage(18.18%)

tRNA,holin,integrase,protease,lysis,transposase

attL 4194058:4194117|attR 4210238:4211295

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008499307.1\|4161754_4162234_-\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA	NA	NA	NA
WP_008499308.1\|4162432_4163227_-	hypothetical protein	NA	NA	NA	NA
WP_058655053.1\|4163277_4165776_-	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	3.3e-111	37.7
WP_021241620.1\|4165884_4166295_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_008499311.1\|4166291_4166744_-	NfeD family protein	NA	NA	NA	NA
WP_008499312.1\|4166740_4167655_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_058655052.1\|4167699_4168551_-	hypothetical protein	NA	NA	NA	NA
WP_058655051.1\|4168694_4169366_+	iron ABC transporter ATP-binding protein FetA	G3M9Y6	Bacillus_virus	2.0e-23	33.8
WP_023293126.1\|4169358_4170141_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_023293125.1\|4170190_4171045_-	co-chaperone YbbN	NA	NA	NA	NA
WP_126287205.1\|4171103_4171874_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_122008371.1\|4171902_4172529_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_058655100.1\|4172496_4173183_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.0e-33	35.7
WP_058655049.1\|4173179_4175594_+	ABC transporter permease	NA	NA	NA	NA
WP_008499321.1\|4175777_4176923_+	porin	NA	NA	NA	NA
WP_058655048.1\|4177013_4178084_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_023293121.1\|4178169_4179237_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_021241611.1\|4179233_4179743_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_008499325.1\|4179914_4180124_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_058655099.1\|4180259_4180982_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_008499327.1\|4180985_4181480_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_008499328.1\|4181654_4183040_+\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	6.9e-42	32.9
WP_008499329.1\|4183126_4183648_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_021241606.1\|4183721_4184738_-	Mal regulon transcriptional regulator MalI	NA	NA	NA	NA
WP_008499331.1\|4184821_4186321_-	PTS sugar transporter	NA	NA	NA	NA
WP_004143016.1\|4186604_4186817_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_008499332.1\|4186818_4187685_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	5.0e-30	34.5
WP_008499333.1\|4187994_4188558_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_008499334.1\|4188626_4189172_+	type 1 fimbrial protein subunit FimI	NA	NA	NA	NA
WP_023326827.1\|4189206_4189899_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_058655047.1\|4189913_4192475_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_039265881.1\|4192467_4193475_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_058655046.1\|4193484_4194006_+	fimbria assembly protein	NA	NA	NA	NA
4194058:4194117	attL	NA	NA	NA	NA
WP_001118619.1\|4194134_4195058_+\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_008499339.1\|4195123_4195756_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
WP_008499340.1\|4196556_4197285_-	response regulator transcription factor	NA	NA	NA	NA
WP_058655045.1\|4197309_4198008_-	EAL domain-containing protein	NA	NA	NA	NA
WP_087855541.1\|4198527_4199715_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	4.7e-124	54.4
WP_087855535.1\|4200747_4201479_+	hypothetical protein	NA	NA	NA	NA
WP_048026851.1\|4201693_4201891_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	3.3e-06	42.6
WP_088581786.1\|4202318_4203466_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.0e-147	92.6
WP_152164558.1\|4204043_4204412_-	hypothetical protein	NA	NA	NA	NA
WP_001118619.1\|4204400_4205324_+\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_058654329.1\|4205992_4206241_+\|lysis	lysis protein	A0A127KNH9	Pseudomonas_phage	1.4e-06	36.4
WP_058654328.1\|4206242_4206782_+	lysozyme	H6WRZ4	Salmonella_phage	8.8e-78	76.3
WP_087855575.1\|4206778_4207168_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	3.4e-23	48.4
WP_126287421.1\|4207349_4207706_-	hypothetical protein	NA	NA	NA	NA
WP_023292743.1\|4207878_4208238_+	hypothetical protein	NA	NA	NA	NA
WP_058654325.1\|4208528_4209377_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.1e-138	92.1
WP_001118619.1\|4210314_4211238_+\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_023292719.1\|4212354_4212654_+	hypothetical protein	G8C7R5	Escherichia_phage	1.1e-34	67.7
4210238:4211295	attR	NA	NA	NA	NA
WP_058654323.1\|4212650_4213292_+	hypothetical protein	G8C7R6	Escherichia_phage	3.1e-98	76.5
WP_126287430.1\|4213241_4213628_-	hypothetical protein	NA	NA	NA	NA
WP_001118619.1\|4213719_4214643_-\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_055321782.1\|4216771_4217086_+	hypothetical protein	M1FJ98	Enterobacteria_phage	1.2e-07	34.0
WP_055321781.1\|4217461_4217653_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_055321780.1\|4217688_4217937_+	DNA-binding protein	A0A286S2A4	Klebsiella_phage	3.7e-15	50.7
WP_058654321.1\|4218203_4219034_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_045335421.1\|4219392_4220409_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_087855608.1\|4220505_4222008_+	iron ABC transporter permease	NA	NA	NA	NA
WP_058654320.1\|4222009_4223041_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-21	34.8
WP_021241596.1\|4223190_4223466_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_058654319.1\|4223651_4225835_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_058654318.1\|4225961_4227935_+	PhoX family phosphatase	NA	NA	NA	NA
WP_058654317.1\|4228038_4229427_+	phenylalanine transporter	NA	NA	NA	NA
WP_058654316.1\|4229671_4230907_+	MFS transporter	NA	NA	NA	NA
WP_058654315.1\|4230922_4231948_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_058654314.1\|4231940_4233083_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_021241589.1\|4233158_4234130_+	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.2e-24	32.2
WP_021241588.1\|4234130_4235375_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_058654313.1\|4235440_4236877_-	MFS transporter	NA	NA	NA	NA
WP_008499383.1\|4236984_4237854_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_058654312.1\|4238003_4238606_+	hypothetical protein	NA	NA	NA	NA
WP_021241586.1\|4238633_4239287_-	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA
WP_023293103.1\|4239407_4239776_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_087855609.1\|4239765_4240356_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_021241583.1\|4240546_4241650_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_010428317.1\|4241682_4242024_+	RamA family antibiotic efflux transcriptional regulator	NA	NA	NA	NA
WP_013097677.1\|4242078_4242327_-	DUF1158 domain-containing protein	NA	NA	NA	NA
WP_087855610.1\|4242815_4245524_+	cation-transporting P-type ATPase	M1I547	Acanthocystis_turfacea_Chlorella_virus	6.5e-68	28.1
WP_126287358.1\|4245629_4246691_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_087855611.1\|4246700_4249856_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_021242649.1\|4249785_4250907_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_032656089.1\|4251011_4251902_+	oxidoreductase	NA	NA	NA	NA
WP_106106290.1\|4252170_4252440_+	hypothetical protein	NA	NA	NA	NA
WP_126287360.1\|4252555_4252855_-	hypothetical protein	NA	NA	NA	NA
WP_045352658.1\|4253085_4253589_-	DUF2569 domain-containing protein	NA	NA	NA	NA
WP_001118619.1\|4253996_4254920_+\|transposase	IS5-like element IS903B family transposase	NA	NA	NA	NA
WP_152164557.1\|4254961_4255528_-	hypothetical protein	NA	NA	NA	NA
WP_058654411.1\|4255667_4256123_-	hypothetical protein	NA	NA	NA	NA
WP_058654410.1\|4256352_4257234_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_031275271.1\|4257339_4258119_+	acetolactate decarboxylase	NA	NA	NA	NA
WP_021242638.1\|4258132_4259812_+	acetolactate synthase AlsS	NA	NA	NA	NA
WP_008499406.1\|4259832_4260603_+	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA
WP_008499407.1\|4260734_4261208_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_058654409.1\|4261315_4262020_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-21	35.9
WP_058654408.1\|4262006_4262843_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.4e-15	31.9
WP_058654407.1\|4262835_4263669_-	ABC transporter permease	NA	NA	NA	NA
WP_058654406.1\|4263668_4264682_-	ABC transporter permease	NA	NA	NA	NA
WP_126287095.1\|4264780_4266349_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_023326860.1\|4266550_4267249_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_087855614.1\|4267282_4268977_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
WP_021242632.1\|4269010_4269751_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_058653607.1\|4270025_4270673_-	hypothetical protein	NA	NA	NA	NA
WP_063618280.1\|4270669_4271224_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_023326865.1\|4271267_4271831_-	fasciclin domain-containing protein	NA	NA	NA	NA
WP_008500974.1\|4271974_4273639_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	9.5e-62	31.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP045065

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2165 : 69075

Escherichia_phage(22.22%)

transposase,integrase

attL 25146:25205|attR 32641:33340

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032676117.1\|2165_3089_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	3.2e-176	99.3
WP_000754567.1\|3439_3856_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_023293777.1\|3852_4083_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_153257569.1\|4220_4883_+	hypothetical protein	NA	NA	NA	NA
WP_152951883.1\|4892_5042_-	hypothetical protein	NA	NA	NA	NA
WP_006797591.1\|5171_6377_+	ParA family protein	A0A077SL49	Escherichia_phage	1.2e-162	69.1
WP_006797589.1\|6373_7351_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	5.0e-87	54.1
WP_032627083.1\|7432_8704_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	8.3e-151	63.3
WP_006796638.1\|8703_9135_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_004152765.1\|9543_11028_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_024195824.1\|12073_12982_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_016240393.1\|13442_14705_+	cytosine permease	NA	NA	NA	NA
WP_032676105.1\|14707_15943_+	PucR family transcriptional regulator	NA	NA	NA	NA
WP_016240391.1\|15939_17178_+	cytosine deaminase	NA	NA	NA	NA
WP_094487604.1\|19798_21006_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	5.7e-101	62.9
WP_000923859.1\|21096_21570_-	hypothetical protein	NA	NA	NA	NA
WP_001198019.1\|21588_22527_-	cation transporter	NA	NA	NA	NA
WP_045358031.1\|23222_23837_+	serine recombinase	NA	NA	NA	NA
WP_001118645.1\|24109_25033_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.0e-166	93.2
25146:25205	attL	NA	NA	NA	NA
WP_032676104.1\|26057_27053_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	3.9e-47	38.7
WP_023332837.1\|27419_29039_+	phosphoethanolamine--lipid A transferase MCR-10.1	NA	NA	NA	NA
WP_048994037.1\|29640_30081_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.6e-19	60.3
WP_152164585.1\|30328_31252_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	2.2e-169	95.4
WP_024191312.1\|33323_33635_+	hypothetical protein	NA	NA	NA	NA
32641:33340	attR	NA	NA	NA	NA
WP_001148851.1\|33724_34810_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_000217345.1\|34843_36001_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_000135555.1\|35997_37164_-	histidinol-phosphate transaminase	A0A1X7QHI1	Faustovirus	1.5e-18	27.4
WP_000993475.1\|37222_38905_-	urocanate hydratase	NA	NA	NA	NA
WP_000741484.1\|38948_40499_-	histidine ammonia-lyase	A0A1V0S940	Catovirus	1.9e-80	39.1
WP_016240370.1\|40613_41399_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.2e-36	38.9
WP_001087990.1\|41398_42280_-	ABC transporter permease	G3M9Y4	Bacillus_virus	6.4e-25	29.7
WP_000069054.1\|42291_43278_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000148344.1\|43516_44113_-	HutD family protein	NA	NA	NA	NA
WP_001112072.1\|44109_45483_-	formimidoylglutamate deiminase	NA	NA	NA	NA
WP_001294851.1\|45724_46525_+	histidine utilization repressor	NA	NA	NA	NA
WP_001515701.1\|46678_47941_+	imidazolonepropionase	NA	NA	NA	NA
WP_000058769.1\|47937_48762_+	N-formylglutamate deformylase	NA	NA	NA	NA
WP_001181218.1\|48993_49671_+	hypothetical protein	NA	NA	NA	NA
WP_152164586.1\|49716_50640_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.0e-174	98.4
WP_006796897.1\|51264_51651_+	hypothetical protein	NA	NA	NA	NA
WP_000861580.1\|51659_51851_+	hypothetical protein	NA	NA	NA	NA
WP_000807690.1\|52871_53627_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	4.5e-136	96.0
WP_008786790.1\|54171_55710_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-278	93.8
WP_000612626.1\|55758_56106_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000839182.1\|56102_56507_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
WP_126287410.1\|57050_57230_+	sugar nucleotide-binding protein	NA	NA	NA	NA
WP_072663757.1\|57245_57794_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.6e-50	58.8
WP_108451322.1\|57925_58675_+	ABC transporter permease	NA	NA	NA	NA
WP_072663759.1\|58664_59987_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	2.1e-16	30.7
WP_072663760.1\|59983_60979_+	hypothetical protein	A0A0B4ZZS0	Mycobacterium_phage	3.6e-16	29.3
WP_072663761.1\|60978_62289_+	glycosyl hydrolase	A0A1V0SDW6	Indivirus	2.2e-29	29.3
WP_072663762.1\|62285_63827_+	hypothetical protein	NA	NA	NA	NA
WP_072663763.1\|63836_64946_+	hypothetical protein	A0A1V0SDW6	Indivirus	6.4e-22	26.5
WP_072663764.1\|64972_65797_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_001067855.1\|66312_67017_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|68370_69075_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045064

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP045065

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection