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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045085 Staphylococcus pseudintermedius strain KCTC 43135 chromosome, complete genome 0 crisprs csa3,DinG,cas3,RT,DEDDh,cas4,PrimPol,WYL 0 0 203 0

Results visualization

1. NZ_CP045085
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 1493 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_2 15197 : 26305 10 Organic_Lake_phycodnavirus(20.0%) protease,tRNA NA
DBSCAN-SWA_3 30719 : 31481 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_4 37356 : 46211 6 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_5 54685 : 60361 4 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_6 64538 : 70445 5 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_7 78366 : 82919 2 Catovirus(50.0%) NA NA
DBSCAN-SWA_8 98906 : 99215 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_9 102603 : 105778 4 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_10 117569 : 120405 3 Staphylococcus_virus(50.0%) NA NA
DBSCAN-SWA_11 129617 : 131252 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_12 136473 : 140882 2 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_13 151962 : 153785 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_14 159902 : 161702 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_15 166887 : 168498 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_16 176985 : 179932 5 Lactococcus_phage(50.0%) lysis NA
DBSCAN-SWA_17 184103 : 184901 1 Halovirus(100.0%) NA NA
DBSCAN-SWA_18 192069 : 206072 18 Staphylococcus_phage(42.86%) NA NA
DBSCAN-SWA_19 212837 : 214551 3 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_20 218447 : 225562 5 Geobacillus_phage(25.0%) tRNA NA
DBSCAN-SWA_21 232758 : 237752 6 Pandoravirus(25.0%) NA NA
DBSCAN-SWA_22 246646 : 268338 24 Bacillus_phage(18.18%) NA NA
DBSCAN-SWA_23 281931 : 284348 3 Indivirus(100.0%) NA NA
DBSCAN-SWA_24 291739 : 294551 2 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_25 300124 : 300754 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_26 305288 : 306131 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_27 311633 : 318422 7 Bacillus_thuringiensis_phage(25.0%) NA NA
DBSCAN-SWA_28 322018 : 328357 5 Synechococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_29 331495 : 332440 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_30 337170 : 338457 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_31 341558 : 353934 10 Yellowstone_lake_phycodnavirus(20.0%) NA NA
DBSCAN-SWA_32 367055 : 402153 30 uncultured_Mediterranean_phage(22.22%) tRNA NA
DBSCAN-SWA_33 411419 : 414050 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_34 423436 : 424699 1 Bacillus_virus(100.0%) protease NA
DBSCAN-SWA_35 428986 : 434771 4 Agrobacterium_phage(33.33%) tRNA NA
DBSCAN-SWA_36 438672 : 445330 4 Bacillus_virus(25.0%) NA NA
DBSCAN-SWA_37 448498 : 450259 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_38 455034 : 458226 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_39 477930 : 484335 9 Staphylococcus_phage(57.14%) portal,head,transposase NA
DBSCAN-SWA_40 487770 : 496699 8 Staphylococcus_phage(50.0%) protease,tRNA NA
DBSCAN-SWA_41 500001 : 501711 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_42 509829 : 514539 3 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_43 524811 : 532603 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_44 536721 : 558119 24 Staphylococcus_phage(95.0%) NA NA
DBSCAN-SWA_45 566716 : 570962 5 Staphylococcus_phage(100.0%) head NA
DBSCAN-SWA_46 578446 : 582223 3 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_47 609776 : 610502 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_48 630734 : 632471 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_49 640989 : 642735 1 Micromonas_pusilla_virus(100.0%) NA NA
DBSCAN-SWA_50 648482 : 649820 1 environmental_Halophage(100.0%) NA NA
DBSCAN-SWA_51 659707 : 660268 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_52 667268 : 668672 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_53 672010 : 674479 2 Erysipelothrix_phage(50.0%) NA NA
DBSCAN-SWA_54 681880 : 696956 13 Bacillus_virus(42.86%) NA NA
DBSCAN-SWA_55 710865 : 711741 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_56 715149 : 719848 5 uncultured_virus(66.67%) NA NA
DBSCAN-SWA_57 726017 : 729226 3 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_58 735880 : 741785 3 Klosneuvirus(33.33%) tRNA NA
DBSCAN-SWA_59 745574 : 750393 4 Yellowstone_lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_60 765058 : 769507 7 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_61 772623 : 774111 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_62 780176 : 785488 6 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_63 800788 : 808668 9 Chrysochromulina_ericina_virus(25.0%) NA NA
DBSCAN-SWA_64 819066 : 825939 5 Only_Syngen_Nebraska_virus(33.33%) transposase NA
DBSCAN-SWA_65 832917 : 834219 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_66 844319 : 845099 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_67 849260 : 857602 3 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_68 868770 : 870573 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_69 880168 : 881074 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_70 889072 : 890521 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_71 898104 : 899067 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_72 910326 : 917669 5 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_73 922868 : 925703 1 Yellowstone_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_74 932149 : 933586 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_75 936679 : 938352 2 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_76 954928 : 958519 2 Moraxella_phage(50.0%) NA NA
DBSCAN-SWA_77 962674 : 965827 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_78 978223 : 978829 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_79 981886 : 982879 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_80 994574 : 1034666 64 Staphylococcus_phage(95.24%) terminase,portal,tail,holin,capsid,integrase,head attL 1030363:1030379|attR 1035400:1035416
DBSCAN-SWA_81 1039217 : 1039946 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_82 1045617 : 1048707 3 Only_Syngen_Nebraska_virus(50.0%) NA NA
DBSCAN-SWA_83 1070974 : 1072171 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_84 1083139 : 1085761 3 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_85 1094274 : 1094490 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_86 1103015 : 1103918 1 Acanthamoeba_polyphaga_mimivirus(100.0%) NA NA
DBSCAN-SWA_87 1107091 : 1108378 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_88 1112446 : 1115722 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_89 1123344 : 1123842 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_90 1129072 : 1130416 1 Aichi_virus(100.0%) NA NA
DBSCAN-SWA_91 1149872 : 1151159 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_92 1158211 : 1159768 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_93 1185299 : 1185479 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_94 1192659 : 1194909 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_95 1199487 : 1200633 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_96 1211500 : 1233955 24 Streptococcus_phage(90.0%) integrase attL 1203323:1203338|attR 1231289:1231304
DBSCAN-SWA_97 1237022 : 1237451 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_98 1242342 : 1244691 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_99 1252712 : 1255448 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_100 1261973 : 1263406 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_101 1278140 : 1278686 1 Halovirus(100.0%) NA NA
DBSCAN-SWA_102 1290656 : 1291352 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_103 1302192 : 1307527 4 Catovirus(33.33%) NA NA
DBSCAN-SWA_104 1317876 : 1319952 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_105 1334154 : 1335906 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_106 1341271 : 1342285 1 Pacmanvirus(100.0%) NA NA
DBSCAN-SWA_107 1348339 : 1351943 3 Staphylococcus_phage(50.0%) terminase,holin NA
DBSCAN-SWA_108 1355372 : 1356998 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_109 1375598 : 1378595 1 Herpes_simplex_virus(100.0%) NA NA
DBSCAN-SWA_110 1383363 : 1387845 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_111 1392215 : 1393106 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_112 1400277 : 1404301 3 Enterococcus_phage(66.67%) NA NA
DBSCAN-SWA_113 1410962 : 1411649 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_114 1419008 : 1419749 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_115 1425937 : 1427452 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_116 1465623 : 1468121 3 Erysipelothrix_phage(50.0%) NA NA
DBSCAN-SWA_117 1477367 : 1480743 4 Clostridium_phage(33.33%) NA NA
DBSCAN-SWA_118 1492206 : 1495321 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_119 1501869 : 1502913 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_120 1507791 : 1509852 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_121 1527392 : 1531378 3 Staphylococcus_phage(50.0%) integrase,transposase attL 1525769:1525785|attR 1533001:1533017
DBSCAN-SWA_122 1536622 : 1537720 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_123 1546683 : 1547664 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_124 1558056 : 1559479 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_125 1573232 : 1574366 1 Brochothrix_phage(100.0%) NA NA
DBSCAN-SWA_126 1578138 : 1579563 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_127 1591324 : 1593337 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_128 1599957 : 1615067 12 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_129 1628127 : 1640912 11 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_130 1647484 : 1656594 5 Bacillus_virus(50.0%) tRNA NA
DBSCAN-SWA_131 1667117 : 1667969 1 Gordonia_phage(100.0%) NA NA
DBSCAN-SWA_132 1682072 : 1689237 7 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_133 1692274 : 1692781 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_134 1698529 : 1701696 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_135 1704748 : 1705774 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_136 1708922 : 1710446 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_137 1715700 : 1716357 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_138 1723988 : 1727019 2 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_139 1732254 : 1733085 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_140 1740400 : 1741123 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_141 1749150 : 1750703 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_142 1767015 : 1790024 16 Salmonella_phage(14.29%) integrase,transposase NA
DBSCAN-SWA_143 1794573 : 1803686 7 Pandoravirus(25.0%) NA NA
DBSCAN-SWA_144 1818006 : 1819710 1 Streptococcus_virus(100.0%) NA NA
DBSCAN-SWA_145 1829604 : 1830222 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_146 1833964 : 1836862 2 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_147 1843074 : 1845480 2 Hokovirus(100.0%) NA NA
DBSCAN-SWA_148 1856054 : 1866027 9 uncultured_virus(25.0%) tRNA NA
DBSCAN-SWA_149 1879907 : 1881317 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_150 1887642 : 1947740 58 Bacillus_phage(18.75%) integrase,protease,tRNA,transposase attL 1897874:1897888|attR 1946671:1946685
DBSCAN-SWA_151 1963088 : 1963757 1 Harp_seal_herpesvirus(100.0%) NA NA
DBSCAN-SWA_152 1973083 : 1975110 3 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_153 1983599 : 2009623 29 Hokovirus(50.0%) integrase,protease,tRNA attL 1981272:1981285|attR 2010730:2010743
DBSCAN-SWA_154 2017850 : 2023998 6 Indivirus(33.33%) NA NA
DBSCAN-SWA_155 2040264 : 2040663 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_156 2045422 : 2047177 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_157 2051705 : 2055752 4 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_158 2059765 : 2060791 1 Moumouvirus(100.0%) NA NA
DBSCAN-SWA_159 2064458 : 2065220 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_160 2068493 : 2070592 2 Emiliania_huxleyi_virus(50.0%) NA NA
DBSCAN-SWA_161 2075134 : 2075614 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_162 2083006 : 2083573 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_163 2086625 : 2089925 2 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_164 2103413 : 2104166 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_165 2109579 : 2148494 35 uncultured_Caudovirales_phage(20.0%) NA NA
DBSCAN-SWA_166 2159653 : 2162914 3 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_167 2169567 : 2174399 2 Acidianus_filamentous_virus(50.0%) NA NA
DBSCAN-SWA_168 2179048 : 2185796 6 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_169 2195295 : 2196600 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_170 2202992 : 2209985 6 Lactococcus_phage(25.0%) NA NA
DBSCAN-SWA_171 2213974 : 2222064 12 Lactococcus_phage(16.67%) NA NA
DBSCAN-SWA_172 2227845 : 2231215 3 Brazilian_cedratvirus(50.0%) NA NA
DBSCAN-SWA_173 2236762 : 2237611 1 Golden_Marseillevirus(100.0%) NA NA
DBSCAN-SWA_174 2243394 : 2251317 8 Paramecium_bursaria_Chlorella_virus(25.0%) NA NA
DBSCAN-SWA_175 2260460 : 2263238 5 Catovirus(66.67%) NA NA
DBSCAN-SWA_176 2267066 : 2270866 3 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_177 2280252 : 2283897 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_178 2288585 : 2293657 2 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_179 2300735 : 2302749 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_180 2311676 : 2313485 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_181 2333008 : 2333890 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_182 2342250 : 2343738 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_183 2348884 : 2353682 3 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_184 2357031 : 2359700 2 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_185 2368169 : 2371516 3 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_186 2380579 : 2382347 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_187 2392002 : 2402906 6 Salmonella_virus(33.33%) NA NA
DBSCAN-SWA_188 2424521 : 2439184 14 Synechococcus_phage(22.22%) NA NA
DBSCAN-SWA_189 2442802 : 2443972 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_190 2460846 : 2470240 9 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_191 2477674 : 2479525 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_192 2484196 : 2487351 2 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_193 2496235 : 2498997 5 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_194 2502631 : 2503702 1 Bodo_saltans_virus(100.0%) tRNA NA
DBSCAN-SWA_195 2509533 : 2514000 3 Bodo_saltans_virus(33.33%) NA NA
DBSCAN-SWA_196 2520502 : 2521087 1 Ugandan_cassava_brown_streak_virus(100.0%) NA NA
DBSCAN-SWA_197 2524736 : 2524934 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_198 2555460 : 2565437 8 Orpheovirus(25.0%) tRNA NA
DBSCAN-SWA_199 2570991 : 2575018 4 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_200 2579877 : 2580810 1 Prochlorococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_201 2583958 : 2585965 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_202 2600167 : 2602992 3 Trichoplusia_ni_ascovirus(33.33%) NA NA
DBSCAN-SWA_203 2611072 : 2611657 1 Listeria_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage