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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045204 Citrobacter sp. NMI7904_11 plasmid pCTEL-1, complete sequence 0 crisprs DEDDh 0 0 1 0
NZ_CP045205 Citrobacter sp. NMI7904_11 chromosome, complete genome 6 crisprs DEDDh,RT,WYL,csa3,cas3,DinG,PD-DExK 0 2 12 0
NZ_CP045203 Citrobacter sp. NMI7904_11 plasmid pCTEL-2, complete sequence 0 crisprs DinG,RT 0 0 1 0

Results visualization

1. NZ_CP045204
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 64125 : 70889 6 Escherichia_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP045205
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045205_1 187857-187959 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045205_2 899318-899422 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045205_3 1832994-1833092 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045205_4 3279152-3279243 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045205_5 4473123-4473245 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045205_6 5273142-5273257 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045205_1 1.1|187891|35|NZ_CP045205|CRISPRCasFinder 187891-187925 35 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 42093-42127 6 0.829
NZ_CP045205_1 1.1|187891|35|NZ_CP045205|CRISPRCasFinder 187891-187925 35 LR134122 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2 272295-272329 7 0.8
NZ_CP045205_1 1.1|187891|35|NZ_CP045205|CRISPRCasFinder 187891-187925 35 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 138017-138051 8 0.771
NZ_CP045205_1 1.1|187891|35|NZ_CP045205|CRISPRCasFinder 187891-187925 35 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 73212-73246 8 0.771
NZ_CP045205_1 1.1|187891|35|NZ_CP045205|CRISPRCasFinder 187891-187925 35 NZ_LN868946 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence 100288-100322 8 0.771
NZ_CP045205_1 1.1|187891|35|NZ_CP045205|CRISPRCasFinder 187891-187925 35 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 223396-223430 8 0.771
NZ_CP045205_1 1.1|187891|35|NZ_CP045205|CRISPRCasFinder 187891-187925 35 NZ_LN868945 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence 60344-60378 9 0.743
NZ_CP045205_1 1.1|187891|35|NZ_CP045205|CRISPRCasFinder 187891-187925 35 NZ_CP019203 Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence 63469-63503 9 0.743
NZ_CP045205_1 1.1|187891|35|NZ_CP045205|CRISPRCasFinder 187891-187925 35 NZ_CP022659 Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence 26633-26667 9 0.743
NZ_CP045205_2 2.1|899347|47|NZ_CP045205|CRISPRCasFinder 899347-899393 47 NZ_CP019203 Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence 5111-5157 9 0.809
NZ_CP045205_2 2.1|899347|47|NZ_CP045205|CRISPRCasFinder 899347-899393 47 NZ_LN868945 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence 1993-2039 9 0.809
NZ_CP045205_2 2.1|899347|47|NZ_CP045205|CRISPRCasFinder 899347-899393 47 NZ_CP019203 Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence 164854-164900 11 0.766
NZ_CP045205_2 2.1|899347|47|NZ_CP045205|CRISPRCasFinder 899347-899393 47 NZ_LN868945 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence 131429-131475 11 0.766
NZ_CP045205_2 2.1|899347|47|NZ_CP045205|CRISPRCasFinder 899347-899393 47 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 428561-428607 11 0.766

1. spacer 1.1|187891|35|NZ_CP045205|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.829

-tgtgctcccgtaggccggataaggcgcagccgtct	CRISPR spacer
ccgtac-accgtaggccggataaggcgcagccgcat	Protospacer
 .**.*  *************************. *

2. spacer 1.1|187891|35|NZ_CP045205|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.8

tgtgctc---ccgtaggccggataaggcgcagccgtct	CRISPR spacer
---gcacagaccgtaggccggataaggcgaagccgcca	Protospacer
   ** *   ******************* *****.* 

3. spacer 1.1|187891|35|NZ_CP045205|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.771

tgtgctcccgtaggccggataaggcgcagccgtct	CRISPR spacer
cgtgctcccgtaggcctgataagacgcattagcgt	Protospacer
.*************** ******.**** . *. *

4. spacer 1.1|187891|35|NZ_CP045205|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.771

tgtgctcccgtaggccggataaggcgcagccgtct	CRISPR spacer
tatctacccgtaggccggataaggcgtagacgcat	Protospacer
*.* . ********************.** **. *

5. spacer 1.1|187891|35|NZ_CP045205|CRISPRCasFinder matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 8, identity: 0.771

tgtgctcccgtaggccggataaggcgcagccgtct	CRISPR spacer
cgcgtccctgtaggccggataaggcggagccgcca	Protospacer
.*.*..**.***************** *****.* 

6. spacer 1.1|187891|35|NZ_CP045205|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 8, identity: 0.771

tgtgctc---ccgtaggccggataaggcgcagccgtct	CRISPR spacer
---gcttaaaccgtaggccgggtaaggcgaagccgcca	Protospacer
   ***.   ***********.******* *****.* 

7. spacer 1.1|187891|35|NZ_CP045205|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.743

tgtgctcccgtaggccggataaggcgcagccgtct	CRISPR spacer
ctcgccgccgtaggccaggtaaggcgcagccgcca	Protospacer
. .**. *********.*.*************.* 

8. spacer 1.1|187891|35|NZ_CP045205|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 9, identity: 0.743

tgtgctcccgtaggccggataaggcgcagccgtct	CRISPR spacer
ctcgccgccgtaggccaggtaaggcgcagccgcca	Protospacer
. .**. *********.*.*************.* 

9. spacer 1.1|187891|35|NZ_CP045205|CRISPRCasFinder matches to NZ_CP022659 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence) position: , mismatch: 9, identity: 0.743

tgtgctcccgtaggccggataaggcgcagccgtct	CRISPR spacer
ctcgccgccgtaggccaggtaaggcgcagccgcca	Protospacer
. .**. *********.*.*************.* 

10. spacer 2.1|899347|47|NZ_CP045205|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 9, identity: 0.809

tgtgtgtcgtggttgcctgatggcgctgcgcttatcaggcctacaaa	CRISPR spacer
cggcggtgccggttgcctgatggcgctgcgcttatcaggcctacatt	Protospacer
.*   **  .***********************************  

11. spacer 2.1|899347|47|NZ_CP045205|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.809

tgtgtgtcgtggttgcctgatggcgctgcgcttatcaggcctacaaa	CRISPR spacer
cggcggtgccggttgcctgatggcgctgcgcttatcaggcctacatt	Protospacer
.*   **  .***********************************  

12. spacer 2.1|899347|47|NZ_CP045205|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 11, identity: 0.766

tgtgtgtcgtggttgcctgatggcgctgcgcttatcaggcctacaaa	CRISPR spacer
tgtggcgtagagatgccggatggcgctgcgcttatccggcctacaag	Protospacer
****   .. .* **** ****************** *********.

13. spacer 2.1|899347|47|NZ_CP045205|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 11, identity: 0.766

tgtgtgtcgtggttgcctgatggcgctgcgcttatcaggcctacaaa	CRISPR spacer
tgtggcgtagagatgccggatggcgctgcgcttatccggcctacaag	Protospacer
****   .. .* **** ****************** *********.

14. spacer 2.1|899347|47|NZ_CP045205|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 11, identity: 0.766

tgtgtgtcgtggttgcctgatggcgctgcgcttatcaggcctacaaa	CRISPR spacer
ctgctatctctattgcctgatggcgcttcgcttatcaggcctacaag	Protospacer
.   *.** . .*************** ******************.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 689592 : 747613 67 Salmonella_phage(78.05%) portal,tail,capsid,plate,terminase,protease,holin,integrase attL 689549:689567|attR 726418:726436
DBSCAN-SWA_2 1724514 : 1785617 59 Salmonella_phage(89.47%) portal,tail,head,capsid,plate,transposase,lysis,tRNA,integrase attL 1722884:1722901|attR 1728800:1728817
DBSCAN-SWA_3 1823639 : 1863023 49 Escherichia_phage(38.89%) holin,terminase NA
DBSCAN-SWA_4 2104436 : 2155198 64 Escherichia_phage(46.67%) tail,plate,terminase,transposase,holin NA
DBSCAN-SWA_5 2396776 : 2405189 9 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_6 2476357 : 2485336 8 Acanthocystis_turfacea_Chlorella_virus(16.67%) transposase NA
DBSCAN-SWA_7 3147813 : 3214235 51 Escherichia_phage(31.25%) transposase NA
DBSCAN-SWA_8 3518129 : 3567738 54 Salmonella_phage(31.58%) tail,coat,terminase,transposase,tRNA,holin NA
DBSCAN-SWA_9 3570929 : 3585101 19 Escherichia_phage(37.5%) NA NA
DBSCAN-SWA_10 4100602 : 4135142 45 Vibrio_phage(67.65%) head,transposase,tail,plate NA
DBSCAN-SWA_11 4993062 : 5000945 9 uncultured_Caudovirales_phage(83.33%) NA NA
DBSCAN-SWA_12 5167553 : 5231239 58 Escherichia_phage(14.29%) transposase,integrase,tRNA attL 5173825:5173850|attR 5231285:5231310
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP045203
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 145614 : 181021 41 Enterobacteria_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage