CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP045337	Labrenzia sp. THAF191a plasmid pTHAF191a_d, complete sequence	0 crisprs	NA	0
NZ_CP045334	Labrenzia sp. THAF191a plasmid pTHAF191a_a, complete sequence	0 crisprs	DEDDh	0
NZ_CP045335	Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence	0 crisprs	csa3	1
NZ_CP045336	Labrenzia sp. THAF191a plasmid pTHAF191a_c, complete sequence	0 crisprs	NA	0
NZ_CP045333	Labrenzia sp. THAF191a chromosome, complete genome	0 crisprs	WYL,DEDDh,RT,csa3,cas3	4

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

989160 : 997042

Synechococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173013770.1\|989160_989979_+	FkbM family methyltransferase	W5SAA0	Pithovirus	5.0e-08	28.6
WP_173013771.1\|990027_990885_-	alpha-1,2-fucosyltransferase	E3SJA0	Synechococcus_phage	2.0e-31	33.9
WP_173013772.1\|990933_991695_-	glycosyltransferase family 25 protein	NA	NA	NA	NA
WP_152508819.1\|992005_992686_+	FkbM family methyltransferase	NA	NA	NA	NA
WP_173013773.1\|992721_993720_-	hypothetical protein	R4TPX3	Phaeocystis_globosa_virus	5.2e-15	29.5
WP_152508821.1\|993868_995047_-	aminotransferase class V-fold PLP-dependent enzyme	A0A0E3I7L6	Synechococcus_phage	1.9e-48	33.1
WP_152508822.1\|995048_995972_-	NAD-dependent epimerase/dehydratase family protein	A0A1D8KU05	Synechococcus_phage	1.3e-57	38.5
WP_152508823.1\|996001_997042_-	GDP-mannose 4,6-dehydratase	M1HKK4	Acanthocystis_turfacea_Chlorella_virus	3.9e-130	66.1

DBSCAN-SWA_2

1889935 : 1937359

Ochrobactrum_phage(23.08%)

transposase,tail,capsid,integrase,plate,tRNA

attL 1929231:1929246|attR 1940424:1940439

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152509280.1\|1889935_1891042_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.1e-69	43.1
WP_152509281.1\|1891135_1892062_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_152509282.1\|1892069_1892786_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_152511872.1\|1893560_1894871_+	hypothetical protein	NA	NA	NA	NA
WP_152509283.1\|1894948_1896991_+	heme biosynthesis protein HemY	NA	NA	NA	NA
WP_152507369.1\|1897732_1898440_-	site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	3.9e-57	51.3
WP_152509285.1\|1898406_1898607_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_152509286.1\|1898790_1899120_+	hypothetical protein	NA	NA	NA	NA
WP_152509287.1\|1899136_1900144_-	hypothetical protein	NA	NA	NA	NA
WP_152509288.1\|1900140_1900377_-	hypothetical protein	NA	NA	NA	NA
WP_152509289.1\|1900380_1900773_-	hypothetical protein	NA	NA	NA	NA
WP_152509290.1\|1900769_1902992_-\|tail	phage tail tape measure protein	M4QFE1	Prochlorococcus_phage	1.0e-07	22.0
WP_152509291.1\|1903164_1903602_-	hypothetical protein	NA	NA	NA	NA
WP_152509292.1\|1903617_1903839_-	hypothetical protein	NA	NA	NA	NA
WP_152509293.1\|1903845_1904352_-\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_152509294.1\|1904363_1905602_-\|tail	phage tail sheath family protein	NA	NA	NA	NA
WP_152509295.1\|1905772_1906312_-	DUF4376 domain-containing protein	A0A2L0V114	Agrobacterium_phage	2.4e-27	48.4
WP_152509296.1\|1906313_1907342_-	hypothetical protein	NA	NA	NA	NA
WP_152509297.1\|1907345_1908929_-	hypothetical protein	NA	NA	NA	NA
WP_152509298.1\|1908938_1912220_-	DUF4815 domain-containing protein	K4ICQ5	Acidithiobacillus_phage	1.3e-139	31.7
WP_152509299.1\|1912219_1913323_-	hypothetical protein	K4I1F8	Acidithiobacillus_phage	3.5e-20	36.0
WP_152509300.1\|1913319_1914171_-\|plate	baseplate J/gp47 family protein	D5LGZ3	Escherichia_phage	6.0e-20	30.2
WP_152511873.1\|1914167_1914572_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_173013811.1\|1914568_1915138_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_152509301.1\|1915134_1915773_-	hypothetical protein	NA	NA	NA	NA
WP_152509302.1\|1915769_1916252_-	phage virion morphogenesis protein	M1NVQ9	Vibrio_phage	2.9e-11	32.6
WP_152507388.1\|1916251_1916719_-	DUF1320 family protein	NA	NA	NA	NA
WP_152509303.1\|1917478_1918438_-\|capsid	capsid protein	A0A219VH83	Ochrobactrum_phage	4.1e-102	57.8
WP_152507390.1\|1918466_1918841_-	DUF2190 family protein	A0A219VH82	Ochrobactrum_phage	3.0e-16	46.6
WP_152509304.1\|1918842_1919829_-	hypothetical protein	M4MCQ9	Vibrio_phage	1.7e-18	28.9
WP_152509305.1\|1920219_1921425_-	hypothetical protein	A0A219VH74	Ochrobactrum_phage	2.0e-69	36.2
WP_152509306.1\|1921426_1923025_-	DUF935 family protein	A0A219VH73	Ochrobactrum_phage	8.1e-119	43.8
WP_152507725.1\|1923018_1924644_-	hypothetical protein	A4JWJ4	Burkholderia_virus	9.7e-128	50.8
WP_152507394.1\|1924673_1925270_-	DUF3486 family protein	M4SNU5	Rhodobacter_phage	3.0e-50	53.1
WP_152509307.1\|1925271_1925568_-	hypothetical protein	NA	NA	NA	NA
WP_152507396.1\|1925569_1925893_-	DUF2730 family protein	A0A219VHD8	Ochrobactrum_phage	1.2e-10	33.3
WP_152509308.1\|1925905_1926178_-	hypothetical protein	NA	NA	NA	NA
WP_152509309.1\|1926188_1926581_-	hypothetical protein	NA	NA	NA	NA
WP_152509310.1\|1926577_1927780_-	DUF3380 domain-containing protein	A0A0A8IK88	Aurantimonas_phage	1.6e-34	36.8
WP_152507399.1\|1927916_1928327_-	hypothetical protein	NA	NA	NA	NA
WP_152509311.1\|1928323_1928959_-	DUF1018 domain-containing protein	A0A219VHC6	Ochrobactrum_phage	3.4e-36	42.4
WP_152509312.1\|1928955_1929186_-	hypothetical protein	NA	NA	NA	NA
WP_152509313.1\|1929191_1929473_-	gas vesicle protein V	NA	NA	NA	NA
1929231:1929246	attL	NA	NA	NA	NA
WP_152509314.1\|1929474_1930158_-	DUF2786 domain-containing protein	G8GWD1	Rhodobacter_phage	4.0e-35	43.3
WP_152509315.1\|1930147_1930339_-	hypothetical protein	NA	NA	NA	NA
WP_152509316.1\|1930331_1930526_-	hypothetical protein	A0A067XQ63	Caulobacter_phage	8.0e-05	46.2
WP_152509317.1\|1930515_1930785_-	hypothetical protein	NA	NA	NA	NA
WP_152509318.1\|1930787_1931456_-	DUF3164 family protein	A0A1B0T6L8	Pelagibaca_phage	1.3e-67	58.1
WP_152509319.1\|1931498_1931789_-	hypothetical protein	NA	NA	NA	NA
WP_152509320.1\|1931778_1932162_-	transcriptional regulator	A0A1B0T6M5	Pelagibaca_phage	3.2e-21	45.5
WP_152509321.1\|1932158_1932803_-	hypothetical protein	NA	NA	NA	NA
WP_152509322.1\|1932802_1933561_-	AAA family ATPase	M4SPU5	Rhodobacter_phage	1.7e-42	39.9
WP_152509323.1\|1933628_1935821_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	4.2e-110	36.9
WP_152509324.1\|1935817_1936069_-	hypothetical protein	NA	NA	NA	NA
WP_152509325.1\|1936065_1936524_-	hypothetical protein	R9U2Q7	Rhizobium_phage	4.9e-21	37.4
WP_152509326.1\|1936516_1937359_-	ParB N-terminal domain-containing protein	R9U496	Rhizobium_phage	7.9e-41	40.9
1940424:1940439	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4544864 : 4556431

uncultured_Mediterranean_phage(81.82%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022998714.1\|4544864_4545200_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.9e-14	42.4
WP_152510844.1\|4545443_4546316_+	DUF815 domain-containing protein	NA	NA	NA	NA
WP_152512017.1\|4546435_4547863_-	peptidoglycan DD-metalloendopeptidase family protein	I2E8W3	Clostridium_phage	6.7e-16	40.2
WP_152512018.1\|4548093_4548750_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.0e-20	41.7
WP_152510845.1\|4548806_4549565_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.7e-38	38.1
WP_152510846.1\|4549754_4551035_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-99	53.6
WP_152510847.1\|4551106_4551907_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	3.5e-54	48.6
WP_152510848.1\|4551903_4552332_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_022998722.1\|4552373_4552598_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	4.3e-10	75.6
WP_152510849.1\|4552724_4553864_-	ATP-binding cassette domain-containing protein	Q6GZ03	Mycoplasma_phage	1.7e-14	34.1
WP_152510850.1\|4553863_4554571_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	4.5e-45	51.5
WP_062491667.1\|4554560_4555400_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.2e-33	34.7
WP_152510851.1\|4555411_4556431_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	5.1e-26	46.6

DBSCAN-SWA_4

5087353 : 5150381

Rhizobium_phage(28.57%)

head,portal,capsid,tail,terminase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152511146.1\|5087353_5088769_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	5.1e-40	33.7
WP_152511147.1\|5089208_5090816_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_023003917.1\|5090955_5091144_+	hypothetical protein	NA	NA	NA	NA
WP_062489081.1\|5091315_5091657_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_173017026.1\|5091666_5092569_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_152511149.1\|5092763_5093048_+	DUF4242 domain-containing protein	NA	NA	NA	NA
WP_152511150.1\|5093050_5093695_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_023003912.1\|5093722_5094238_-	CreA family protein	NA	NA	NA	NA
WP_152512054.1\|5094374_5095616_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_152511151.1\|5095995_5096496_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_152511152.1\|5096632_5097973_+	DUF2865 domain-containing protein	NA	NA	NA	NA
WP_152511153.1\|5097935_5099297_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_075281526.1\|5099349_5100567_-	MFS transporter	NA	NA	NA	NA
WP_152511154.1\|5100745_5102413_-	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	1.2e-101	39.1
WP_152512055.1\|5102558_5103032_-	response regulator	NA	NA	NA	NA
WP_023003903.1\|5103257_5104640_-	3-deoxy-7-phosphoheptulonate synthase class II	NA	NA	NA	NA
WP_152512056.1\|5104918_5105650_+	VIT1/CCC1 transporter family protein	NA	NA	NA	NA
WP_152511155.1\|5105664_5106261_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_152511156.1\|5106314_5107508_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_152511157.1\|5107600_5109142_+	diguanylate cyclase	NA	NA	NA	NA
WP_152512057.1\|5109425_5110886_+	diguanylate cyclase	NA	NA	NA	NA
WP_152511158.1\|5110944_5112321_-	glutathione-disulfide reductase	NA	NA	NA	NA
WP_023003896.1\|5112578_5113046_-	DUF2059 domain-containing protein	NA	NA	NA	NA
WP_152511159.1\|5113149_5113842_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_152511160.1\|5114066_5115839_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_031270693.1\|5116023_5116686_+	HAD hydrolase-like protein	NA	NA	NA	NA
WP_152511161.1\|5116704_5118660_-	DUF4139 domain-containing protein	NA	NA	NA	NA
WP_152511162.1\|5119481_5120297_+	hypothetical protein	NA	NA	NA	NA
WP_152511163.1\|5120455_5120635_+	hypothetical protein	NA	NA	NA	NA
WP_152511164.1\|5120635_5120932_-	hypothetical protein	NA	NA	NA	NA
WP_152511165.1\|5121170_5121545_-	hypothetical protein	NA	NA	NA	NA
WP_152511166.1\|5121704_5122199_-	hypothetical protein	NA	NA	NA	NA
WP_152511167.1\|5122198_5122951_-	glycoside hydrolase family protein	A0A0K1Y6F2	Rhodobacter_phage	1.3e-21	43.0
WP_152511168.1\|5123147_5125595_-	hypothetical protein	NA	NA	NA	NA
WP_152511169.1\|5125643_5127911_-	hypothetical protein	NA	NA	NA	NA
WP_152511170.1\|5127907_5128315_-	hypothetical protein	NA	NA	NA	NA
WP_152511171.1\|5128337_5128994_-	hypothetical protein	NA	NA	NA	NA
WP_152511172.1\|5128977_5129535_-	hypothetical protein	NA	NA	NA	NA
WP_152511173.1\|5129666_5131856_-	tape measure protein	A0A2H4GY41	Pseudomonas_phage	2.0e-35	39.4
WP_173013922.1\|5131856_5132030_-	hypothetical protein	NA	NA	NA	NA
WP_152511174.1\|5132026_5132398_-	gene transfer agent family protein	A0A141GEX0	Brucella_phage	4.1e-26	57.1
WP_152511175.1\|5132397_5132853_-	hypothetical protein	A0A141GEW9	Brucella_phage	4.0e-39	54.3
WP_152511176.1\|5132917_5133328_-	DUF3168 domain-containing protein	B4UTQ1	Rhizobium_phage	7.1e-27	48.5
WP_152512059.1\|5133324_5133783_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_152511177.1\|5133794_5134139_-\|head,tail	head-tail adaptor protein	B4UTP9	Rhizobium_phage	3.1e-12	34.6
WP_173013923.1\|5134138_5134681_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_152511179.1\|5134698_5135028_-	hypothetical protein	NA	NA	NA	NA
WP_152511180.1\|5135101_5136376_-\|capsid	phage major capsid protein	B4UTP3	Rhizobium_phage	8.1e-130	59.5
WP_152511181.1\|5136426_5137029_-\|head,protease	HK97 family phage prohead protease	A0A1B2APW1	Phage_Wrath	6.7e-34	45.5
WP_152512060.1\|5137012_5138176_-\|portal	phage portal protein	B4UTP1	Rhizobium_phage	6.1e-132	60.3
WP_152511182.1\|5138262_5139978_-\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	1.2e-144	47.9
WP_152512061.1\|5139977_5140373_-	hypothetical protein	NA	NA	NA	NA
WP_152512062.1\|5140557_5140866_-	HNH endonuclease	D2JLE2	Staphylococcus_phage	9.7e-05	39.4
WP_152511183.1\|5140953_5141679_-	hypothetical protein	NA	NA	NA	NA
WP_152511184.1\|5141675_5142926_-	helix-turn-helix domain-containing protein	A0A068CE61	Rhizobium_phage	1.4e-25	30.3
WP_152511185.1\|5142922_5143123_-	hypothetical protein	NA	NA	NA	NA
WP_152511186.1\|5143115_5143445_-	hypothetical protein	NA	NA	NA	NA
WP_152511187.1\|5143441_5145301_-	DNA cytosine methyltransferase	R9TP91	Rhizobium_phage	1.4e-138	44.3
WP_152511188.1\|5145293_5146361_-	DUF5131 family protein	A0A291AUR0	Sinorhizobium_phage	9.3e-95	50.6
WP_152511189.1\|5146350_5146671_-	DUF4326 domain-containing protein	A0A160DCT3	Gordonia_phage	4.1e-14	46.8
WP_152511190.1\|5146670_5147630_-	AAA family ATPase	D9CGB3	Hyperthermophilic_Archaeal_Virus_2	2.7e-05	36.1
WP_173013924.1\|5147629_5148292_-	DUF2312 domain-containing protein	A0A088F6Z6	Sulfitobacter_phage	1.8e-08	47.2
WP_173013925.1\|5148305_5149673_-	site-specific DNA-methyltransferase	A0A0K1LLI2	Rhodobacter_phage	1.8e-79	43.5
WP_152511193.1\|5149665_5149932_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152511194.1\|5149928_5150381_-	hypothetical protein	A0A2D1GMW7	Marinobacter_phage	2.4e-44	58.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP045335

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

458823 : 466129

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152512258.1\|458823_460566_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.4e-12	26.3
WP_152512257.1\|460569_461367_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	4.0e-18	29.6
WP_173014018.1\|461359_462292_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_152512255.1\|462364_463354_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	5.7e-131	71.3
WP_152512254.1\|463366_465517_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.0e-209	50.6
WP_055660870.1\|465498_465903_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	U5J9E9	Bacillus_phage	1.7e-12	39.5
WP_055660868.1\|465907_466129_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	3.4e-20	61.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045333

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP045335

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection