CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	0 crisprs	cas3,DEDDh,csa3	0	0
NZ_CP045341	Vibrio sp. THAF190c plasmid pTHAF190c_c, complete sequence	1 crisprs	DinG,cas6f,cas7f,cas4	1	0
NZ_CP045338	Vibrio sp. THAF190c chromosome, complete genome	0 crisprs	DEDDh,DinG,csa3,WYL,csx1,cas3	0	5
NZ_CP045340	Vibrio sp. THAF190c plasmid pTHAF190c_b, complete sequence	0 crisprs	csa3,PD-DExK	0	0
NZ_CP045343	Vibrio sp. THAF190c plasmid pTHAF190c_e, complete sequence	1 crisprs	NA	1	0
NZ_CP045342	Vibrio sp. THAF190c plasmid pTHAF190c_d, complete sequence	1 crisprs	NA	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045341_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045341_1

66154-66240

Unclear

I-F

Consensus_repeat	Method
TTCTTAGCTGCCTATTCGGCAGGACAC	CRISPRCasFinder

1 spacers

cas6f,cas7f

The CRISPR arrays of NZ_CP045341_1

>merge|NZ_CP045341|1|66154-66240|CRISPRCasFinder
TTCTTAGCTGCCTATTCGGCAGGACACATGATGATCGGAAATGCAGTACCGCCGGAAATTTTCTTAGCTGCCTATTCGGCAGGACAC

>NZ_CP045341|1|1|66154-66240|CRISPRCasFinder
TTCTTAGCTGCCTATTCGGCAGGACAC	ATGATGATCGGAAATGCAGTACCGCCGGAAATT
TTCTTAGCTGCCTATTCGGCAGGACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045341.1\|WP_152471216.1\|58552_59872_-\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP045341.1\|WP_152471233.1\|79475_80099_-\|TnsA-endonuclease-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378037
NZ_CP045341.1\|WP_152471228.1\|74213_75593_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|223989
NZ_CP045341.1\|WP_152471218.1\|60587_60923_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198006
NZ_CP045341.1\|WP_152471221.1\|62052_62340_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378569
NZ_CP045341.1\|WP_152471232.1\|77607_79473_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378147
NZ_CP045341.1\|WP_152471214.1\|56573_57965_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP045341.1\|WP_152471227.1\|71572_74053_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP045341.1\|WP_152471223.1\|65242_65707_-\|MerR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|133414
NZ_CP045341.1\|WP_152471217.1\|59868_60552_-\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP045341.1\|WP_172974337.1\|76544_77639_-\|TniB-family-NTP-binding-protein	unknown	unknown	gnl\|CDD\|377533
NZ_CP045341.1\|WP_152471220.1\|61807_62032_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045341.1\|WP_152471225.1\|66982_68014_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09737_cas7f_CAS-I-F	gnl\|CDD\|187868
NZ_CP045341.1\|WP_152471226.1\|70110_71322_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NZ_CP045341.1\|WP_152471219.1\|61007_61388_-\|DUF3316-domain-containing-protein	unknown	unknown	gnl\|CDD\|371718
NZ_CP045341.1\|WP_152471230.1\|76233_76548_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP045341.1\|WP_152471229.1\|75586_76132_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045341.1\|WP_152471222.1\|62520_65241_-\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP045341.1\|WP_152471224.1\|66355_66973_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870
NZ_CP045341.1\|WP_152471215.1\|58056_58446_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP045341.1\|WP_152471216.1\|58552_59872_-\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	3.40498e-109
NZ_CP045341.1\|WP_152471228.1\|74213_75593_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.83385e-29
NZ_CP045341.1\|WP_152471218.1\|60587_60923_-\|hypothetical-protein	gnl\|CDD\|198006	smart00938, P-II, Nitrogen regulatory protein P-II. P-II modulates the activity of glutamine synthetase.	0.00619485
NZ_CP045341.1\|WP_152471221.1\|62052_62340_-\|hypothetical-protein	gnl\|CDD\|378569	pfam11143, DUF2919, Protein of unknown function (DUF2919). This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.	0.00862539
NZ_CP045341.1\|WP_152471214.1\|56573_57965_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	4.70609e-18
NZ_CP045341.1\|WP_152471227.1\|71572_74053_+\|PAS-domain-containing-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	4.74839e-80
NZ_CP045341.1\|WP_152471223.1\|65242_65707_-\|MerR-family-DNA-binding-protein	gnl\|CDD\|133414	cd04787, HTH_HMRTR_unk, Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the conserved, metal-binding cysteines seen in the MerR1 group.	2.28266e-49
NZ_CP045341.1\|WP_152471217.1\|59868_60552_-\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	6.03089e-99
NZ_CP045341.1\|WP_152471233.1\|79475_80099_-\|TnsA-endonuclease-N-terminal-domain-containing-protein	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	1.96685e-11
NZ_CP045341.1\|WP_152471232.1\|77607_79473_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	2.60909e-07
NZ_CP045341.1\|WP_152471225.1\|66982_68014_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|187868	cd09737, Csy3_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas7 ortholog.	1.77141e-149
NZ_CP045341.1\|WP_152471226.1\|70110_71322_-\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	1.67442e-08
NZ_CP045341.1\|WP_152471219.1\|61007_61388_-\|DUF3316-domain-containing-protein	gnl\|CDD\|371718	pfam11777, DUF3316, Protein of unknown function (DUF3316). This family of bacterial proteins has no known function. Several members are, however, annotated as being putative acyl-CoA synthetase, but this could not be confirmed.	2.22854e-15
NZ_CP045341.1\|WP_152471230.1\|76233_76548_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.79238e-13
NZ_CP045341.1\|WP_172974337.1\|76544_77639_-\|TniB-family-NTP-binding-protein	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	6.07384e-12
NZ_CP045341.1\|WP_152471224.1\|66355_66973_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.03317e-50
NZ_CP045341.1\|WP_152471222.1\|62520_65241_-\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NZ_CP045341.1|WP_152471223.1|65242_65707_-|MerR-family-DNA-binding-protein
MCIKPSEELVMLTTEIARVAGVTAETVRFYTRKGLLYAERDPNNGYKIYQQSAVNRLKFISHARAIGFSLSQIQEIIDYSEQGQTPCPAVRQMLTDKIVETKQKIEEYQRHLAMMEATYTEWDEKPDMEPNGNALCCLIEDWSEKHHQVLPEEN
>NZ_CP045341.1|WP_152471222.1|62520_65241_-|heavy-metal-translocating-P-type-ATPase
MNTTQYSLALSGINCGRCVAKIVDELRERDPDVSFTINETKHRAELITTLMPESAIEVIAKLGYVASIPTQQEYRTSVSNVTCQHCVGKITKAIVELDATAQVVVDLDKQTLVVNSSLNGDEIESVLVEQGYSGSTDGTQPQTTDVTKSNKVKTTQAVDVSIELSLIGVTCASCVNTIEGALRSVSGVDSVDVNFANRTATVVSSQPASVLIEAIQGAGYDAEEIVDQALASDLKEEREAEEYRFKVKQSVIGLGLGVPLMVYGLFGGPMNVNTQSEQLLWLAVGLVTFFILVRAGKHFFTGAWKTFLSRNANMDTLIALGTGTAWLYSMVVVVGPQWLPESARHLYFEATAMIIGLINLGQALELKARGRTSQAIKRLLDLRVKTAMVIRDGKEMSIPIEQVIARDLIRVRAGEKVPVDGVITEGETTIDESMLTGEPIPVVKQVGSSVSAGTINDHGSFVFEAQKVGSDTVLAQIISMVSNAQNSKPPISHLADKVSSVFVPTVMILSILTALAWYNFGPQPSLVYMIVAATSVLIIACPCALGLATPISTMIGVGKAAEFGGLIRNGEALQRASELDVVVLDKTGTITQGKPEVTNFVLLSEDSELLPLVNALEKGSNHPLAKALIAFTQSEVSDEANLLEVSDFESLTGLGVQAQYASQRVLLGNRKLMNQFKVNVESVTEHALQWEQEANTVVYFAIGDQLKALFGISDPIRDDARSAINRFHQQGIHVVMLTGDNHNTAKAVASLANVDEYHAQLMPEDKLHWIKQLQAKGHVVGMVGDGINDAPALAQSDVGFAIGSGTDVAIESADITLMRSSLHGISDVIGISTATMKNIKQNLWGAFIYNSLGIPVAAGLLFPFTGWLLSPIIAGAAMSLSSVTVVTNANRLRLYTPPSAPTTNEE
>NZ_CP045341.1|WP_152471221.1|62052_62340_-|hypothetical-protein
MKSKKPDCHKNGHHKGHGWMMILCALLMVGIPLFILTSSQEVFSWAYLSSAIVPLIICLAMHGLMMKMIMPSEKKDSETNDQSMAKIENNPEFKA
>NZ_CP045341.1|WP_152471220.1|61807_62032_-|hypothetical-protein
MKKLYVSVILSSLIAAPVFATSTSEQHLKSYTNQDVQTHMKQSKMSSQQESNSMMDGKSMENMLNDCRKMMDKV
>NZ_CP045341.1|WP_152471219.1|61007_61388_-|DUF3316-domain-containing-protein
MNTLNKILLSVTCLLVSSVSIAQPLHSSGNYVSRVDHKTVSIDAVSSKQRAYMLGAKKLSEFEGMSGRELSTTLIPVTTNGSRRNSTHLKDGGYVTVQERLNSQGQLEYVAKIHINVHYQERDSNN
>NZ_CP045341.1|WP_152471218.1|60587_60923_-|hypothetical-protein
MIDKVSVIFQEHRLEEIESILMDEGVRKFTIYPVQGRGTQANLIDTHVLSSYYKLDVFIGQNYTGRLTEILLNTVSVSQEGNGVTSVERNVLVYDNNTKQQISLSSYNHKP
>NZ_CP045341.1|WP_152471217.1|59868_60552_-|heavy-metal-response-regulator-transcription-factor
MKLLVVEDEEKAGAYLKKGLIESGYSVDLSKDGVDALYLATSGDYDLIILDIMLPKLNGWQILHTLRSSDISIPVIILSAKDEVEDRVKGLELGANDYLVKPFAFVELLARVKNVLRNQASTSREVSTLDIADLSFDLLKRKVTRQSDTIQLTAKEFSLLEYFFSKKGQVVTRTQIASAVWDMNFDSDTNVIDAAVKRLRSKIDKPYKQKLIHTVRGMGYKLDDAVE
>NZ_CP045341.1|WP_152471216.1|58552_59872_-|heavy-metal-sensor-histidine-kinase
MKKLLRQSIARKLVFMFVTASFVVLVVFALTIQHAIKNHFNEQDYKHLETKLLPLMGTIERDLDIFHSWDISAWILNNKQVVQTNNGTIDFPPELIEGSSYEWSVGNNHYQAFKFDYSEVEGGAIVLAIDVTHHKLFFDKLNTILFWTLVLTVSLSGAYALIIVRNGLLPLKTLKEYIEQVNTSNLSIRIPSESLPKELSSLIVSQNEMLERLQTGYLRLSEFSSDIAHELRTPLNNIMTQTQVALGTERSIEEYEDILVSNIEELERFNKTISDTLYLAKSENKLLHKTESELELKEVITPLLEYYEVLAEEKNVRFTLDGSSTLFGDKDMLQRAFGNVLSNALRHCFHNTDISVVISESETSNKVTISNTGEPIPLSSLPYIFERFYRSDKSRVHNGSVGAGLGLPIAKAIMKAHSGDILVNAKDERTEFVFIFNNS
>NZ_CP045341.1|WP_152471215.1|58056_58446_-|hypothetical-protein
MIISILAMLMSSYVSSMSMMDMSPISTSSSLQPKLSHHDSMGMTETTASHHAMIGCQPMEVAESESSTHCGSSSVFGGDCCKSVCSSVFFPLSSSRLINISEPDLALRHPIKIGVTVTRIQSLLRPPSV
>NZ_CP045341.1|WP_152471214.1|56573_57965_-|TolC-family-protein
MNIESNGSRVLRTLSLGVAIALYAMPALSHTKSNVTPQTIATSTHQLNALIEVALENDTSRSQYAAQSQAVREMGVASATLMDPKLKVGFGGLPVDSFKFDEDPMTNISVGLMQQFERGATLDLNQRKANQQADGIAYQVQVREREVANSITQLWLELGYLQHAETLIESNQRLMVEMEQYIQTNYSIGKSEAQDLLNTQLQVNKLDEKLQSNQQMQNRVVAQLSEWLGSEWLHRRAIDSNQVGYQLDWSRLNTLLDQQTSDTQYYSLLNQNPMVQMADANISANRTQVEVAEQSYTPQFGVEVMYAYRQADNMKGEPTSDLLSAYLTMDIPLFTDSRQDKNVAAAQYQVGAAQYQKDTLLAQMNSQVVALTTDRENLAERIERYQSRFIPQSKARIEAVERGYQNNTAPFGDVIIASTDDLALQMELARLITDMNQINSKLSMLLGGFAYQISAPNTQYKEQ
>NZ_CP045341.1|WP_152471224.1|66355_66973_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MTKRYYFLIRYMPAQADHELLAGRCISQVHLFMVNNRQAMNRIGVSFPDWNESTVGQTIAFVAEDKEMMVGLSFQPYFSVMVNEGLFEISSVCEVPANALEVRFTRNQTIGKSFLGSKKRRIKRSMARVELSGAGTSLPATNEERVIESFHRIPVSSGSSAQDYILFVQKEFVDERVAANFNSYGLATNQERKGTVPELRFLPFF
>NZ_CP045341.1|WP_152471225.1|66982_68014_-|type-I-F-CRISPR-associated-protein-Csy3
MELCTQLNYVRSLSAGKAYFYYLSKSGEMCPLDIDRTRLRAPKGGYSEAYKGGKFVKKNVAPQDLAYSNPQFIEECYVKPGVDDIYCAFSLRIRANSLTPDTCSDDEARSKLSLLAKTYQELNGYQELALRYAKNILLGTWLWRNRECRKLSIEVATSDSQTLIVENATRLSWYGHWDKASAECLEKLTAYLMRALSDPTEYFYMDVKAKIGVGWGDEVYPSQEFLDDREDGVPTKQLATVELLNGKETVAFHGQKIGAALQSIDDWWHEDADKPLRVNEYGADREYVIARRHVSYGNDFYQLVRNTENWIETMIASQTIPNDVHFIMSVLIKGGLFNCSKAK
>NZ_CP045341.1|WP_152471226.1|70110_71322_-|TniQ-family-protein
MKTDIQFYLDESLESFLLRLSQEQGYERFSHFAEDIWFDTMDQHKAIAGAFPLELNRVNIYHAQTTSQMRVRVLIHLENQLKLNNFGVLRLALSHSKAQFSPQYKAVHRFGADYPYAFLRKCFTPICPLCIDEAPYIRQQWQFISHQACEHHGCKLVHHCPECKSRLEYQSTESISQCECGYELRNSPVEDAQEVEVLVAQWLSGSDSKLLGLLTGKMTLSERYGFLLWYVNRYGDIDDPSFESFIEYCCAWPAALWQDLDVLKEKAELVRVKDWKKVFFNEAFGALLKDCRQLPSRQLSHNIVLTQVLAYFTQLMAAVPSSVKGNIGDVLLSPLEASTLLSCTTDEVYRLYEFGEIKAVIRPRMHTKIASHESAFTLRSVIETKLTRMSSESDGLNVYLPEW
>NZ_CP045341.1|WP_152471227.1|71572_74053_+|PAS-domain-containing-protein
MVKLSSVSPKVLLFLFILLTPLTFGGISLYVLSNHSQSTAKQLQKGNSSFEIESAKIFMEKYLEVAEDRIVLASQHQGVIDAASQSNIERLSYHLERFKGQNQSMQFAVRDRTGKLLFEDTFRHPAAKQEQAIFSAIANQNVHERILYLLHDDTNHICIKLFMPLYQSGEFTGVIYGETAVDYDDFFGSFVTNRERWYELSQTEPPVASLVETNRKLEHNHHSFSSHASKYNEKDWLLTQTPLARGNLVLTQGISRSFLKEQLSTLKRELLNGLLIVLITSSILVFLLGQKLFVNPHKELEGSKKLLEESNKLLAEREHDSHLLATVVKAARDAVVITDKEGRIEWVNNAFEVMTGHQLDSVKGLTPGSFLQGEDTCNETASRIGSALKKGKQVKAEILNYTIDKVPYWVDIDIVPLRNEDGEIAHFIAIERDVTDFKKLELELEEQASKAHQANQAKSLFLATMSHEIRTPMNGLLGLLQMLVDELEQEQQREVLRLALGSGEHLIAILNDILDLAKIENDSLEIDQHAFKMSEIISPVLNTYQTLCSEKGLKFNLTDHCDPSLTYYGDSVRIRQVLLNLAGNAMKFTESGSIDIDIKQLSHSKMEFAVQDSGIGIPNDRLQSIFNEFEQADISTTRNYGGTGLGLAICHKLVTLMNGQISVESELSKGSRFSFVIDLPTIAHSDEKNTESQVVDLSQFKALVADDNKMNRIIAKGFLDKLNVECVTCGDGFEALSHLESGNFNLVIIDNHMPKISGVETVRRIREAVKGNIVVMGWTADIMQTSTHAFLEAGADEVLTKPLIKKDLIEALSRHINQVKAIDKAS
>NZ_CP045341.1|WP_152471228.1|74213_75593_-|DEAD/DEAH-box-helicase-family-protein
MLRTWQAECAAQVIDKFTSNKRSHFFCQATPGAGKTVMAAEVAKRLFQEGMIDLVLCFSPSLSVAEGMRKTFSWKLECSFNGGLGSLGGSYTYQSIRFLDENFWNTVSKYRVLVVFDEIHHCSFDDEGRSNSWGLEIVSKIQGFAHYTLALSGTPWRSDRLPIVMAEYSGPDGKVVCDYQYGLQQAVEDKVCHRPKIVLIDNEHLSVKAGSDNQHFASILDCLKQSDVSYQSVIHNEDAMNYILNNGCQKLAQIRQESPNAGGLVVAASIKHAKHIQKRLIEHFNQSACIVTYHHDNPLNEIESFRHSNVQWIVSVGMISEGTDIPRLQVCCHMSSVKTELYFRQVLGRILRVNDSPNQEAWLYTFAEESLIGFAERIEQDVPEVCMLVESNLHFVTYEHSELKSDHQSKELRGLVSTKVDNTVAWGDRLDFSLDPLSSLNRELCFGSFKKRVLSAFLN
>NZ_CP045341.1|WP_152471229.1|75586_76132_-|hypothetical-protein
MKKVTRINPHMFNLLIEKGMDNFSVIEARDALLNGTSTFTSSDEARKYVYKQLLSLEEKGWLSAIGARRGKRYHQTNEFKALTIEPRAARNKKANVDSITVQTPEFSLNALEQEKKQHEGELAITLGEIEEYQSLLTRFPNNKHDMEPLFNAARERSAKLLGKINALTNWMQVAQSKASQC
>NZ_CP045341.1|WP_152471230.1|76233_76548_+|helix-turn-helix-domain-containing-protein
MQKDNPIPARLKAARKKAKITQKDLGVKIGMEPSSASGRMNHYEKGRHVPDIGTLERMAEELNVPLNYFFCRNELSAELACAIDKMSDEEKKALLENLNGESNL
>NZ_CP045341.1|WP_172974337.1|76544_77639_-|TniB-family-NTP-binding-protein
MMISKILRGINLNLTSSQFEQLRSFETCFIEYPAITEIYSIFDQLRFNHSLGGEPESFLLTGEAGSGKTALINNYLSRFPSSSTWSKQPVLSTRVPSRINEQSTLTQFLVDLNGKSGGRGTRRLNEIALGEAVVTQLKRKSVELIIVNEIQELVEFSTAEERQAIANTFKYISEEAKVSFVLVGMPYADVIATEPQWNSRLSWRRKIEYFKILKANSYSSGTASYAFDLEQKKHFAKFVAGLSARMSFDEPPVLTKNEVLYPLFVMCKGECRALKHFLKDALLMSFNDNVDTIDKAILSRTFSFKFPYLDNPFDAPVEELRLHQIDSGSAYNLNAIAAEDKILAPRFTDAIPLSMLLSKSGLKA
>NZ_CP045341.1|WP_152471232.1|77607_79473_-|DDE-type-integrase/transposase/recombinase
MSSDSNNIFGFFDEFEASEGESQPLPIELIQEPIEISSTIDSQSPKVQKEVIRRIKIIDFVEKRLKGGWTEKNLNPILSLIEPELQLTPPSWRTLATWKKYYFEAGKDPCALIPKHTFKGNRQKEMDSQSLIDEAIQNVYLTRERLSVAEAYRYYKSRVIQINRGIVEGKIKPISERSFYNRIHGLPPYEVAIARFGKRYADREFRSVGQQVAATKPMEYVEIDHTPVPVILIDDELDIPLGRPYLTMLYDRFSKCIVGLSVNFRDPSFDSVRKALLNTLIDKSWLKNSYPSIKNDWPCHGKIDYLVVDNGAEFWTDSLEDSLRPFVTDIQYSQTAKPWRKSGIEKLFDQMNKGLVNSLPGKTFTNPTQLEDYNPKKDAVVRVSVFLELLHKWIVDYYHMAPDSRERDIPYHKWKQSEWTPSYYSGAEKEQLRVELGLLRHRTIGVSGIRLHNLRYQSSELIEYRKYWASNNGKKLYVKTKTDPSDISSIHVYLESEKKYIKVPAVDNTGYTSGLSLFEHERIQRVRRLNIRQLADDESLADTFLYMKNRIQEETDRFRNAKSNKASLPKTGNTSKLAKFNDVGSEGPSSINTTPDKQDTTSVFDAPEQLFDDDFEDIEGY
>NZ_CP045341.1|WP_152471233.1|79475_80099_-|TnsA-endonuclease-N-terminal-domain-containing-protein
MFDQTKKSSHVHNICKFMSLKNDAVVRTLSILEFDFCFHLEYNADIKSFTSQPFGFHYQFNNRKCRYTPDFLATDHDDHSTFFEVKHSSQILKPDFRDRFEEKQRVAFSEFNRRLVLVTEKQIRMGPTLDNFKLLHRYSGLRTVTEFQKLVLAFIQRKQMVKLQEVSLYFGLSEQDTLISTLPWISSGQVKTDLNNIGFGLETYVWC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045341_1	1.1\|66181\|33\|NZ_CP045341\|CRISPRCasFinder	66181-66213	33	NZ_CP045341	Vibrio sp. THAF190c plasmid pTHAF190c_c, complete sequence	66181-66213	0	1.0
NZ_CP045341_1	1.1\|66181\|33\|NZ_CP045341\|CRISPRCasFinder	66181-66213	33	NZ_CP045122	Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence	239164-239196	10	0.697

1. spacer 1.1|66181|33|NZ_CP045341|CRISPRCasFinder matches to NZ_CP045341 (Vibrio sp. THAF190c plasmid pTHAF190c_c, complete sequence) position: , mismatch: 0, identity: 1.0

atgatgatcggaaatgcagtaccgccggaaatt	CRISPR spacer
atgatgatcggaaatgcagtaccgccggaaatt	Protospacer
*********************************

2. spacer 1.1|66181|33|NZ_CP045341|CRISPRCasFinder matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

atgatgatcggaaatgcagtaccgccggaaatt	CRISPR spacer
cggatgatcggaaatgccgtcccgccccttctc	Protospacer
  *************** ** *****     *.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

642391 : 649619

Faustovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032551302.1\|642391_643606_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	6.3e-31	30.4
WP_004740340.1\|643639_644017_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	6.9e-53	78.2
WP_032551305.1\|644115_644439_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	6.8e-25	50.5
WP_032551306.1\|644535_645051_+	co-chaperone HscB	NA	NA	NA	NA
WP_152468204.1\|645073_646924_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.4e-108	40.6
WP_032551309.1\|646944_647283_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_032551310.1\|647377_647578_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_152468205.1\|647784_649080_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	7.7e-35	33.3
WP_152468206.1\|649184_649619_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.5e-22	39.7

DBSCAN-SWA_2

1339942 : 1349724

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152468556.1\|1339942_1340689_-	Fe-S cluster assembly ATPase SufC	A0A2R8FG22	Brazilian_cedratvirus	5.4e-09	27.0
WP_152468557.1\|1340691_1342164_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_152468558.1\|1342166_1342535_-	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA
WP_150894961.1\|1342721_1342946_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	3.2e-13	53.5
WP_152468559.1\|1342942_1343341_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.2e-18	46.6
WP_152468560.1\|1343333_1345466_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	5.4e-203	49.5
WP_152468561.1\|1345482_1346454_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.1e-129	70.7
WP_152469539.1\|1346528_1347125_-	redoxin family protein	NA	NA	NA	NA
WP_152468562.1\|1348002_1349724_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.5e-22	25.1

DBSCAN-SWA_3

1570373 : 1582488

Vibrio_phage(70.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032549088.1\|1570373_1570688_-	DUF2523 domain-containing protein	A0A1W6UG81	Vibrio_phage	1.6e-31	65.4
WP_152468664.1\|1570691_1572323_-	hypothetical protein	A0A1W6UG63	Vibrio_phage	1.4e-28	55.0
WP_152468665.1\|1572621_1572864_-	single-stranded DNA-binding protein	A0A1W6UH23	Vibrio_phage	2.8e-15	53.1
WP_032549084.1\|1572881_1573220_-	DUF1293 family protein	Q858R2	Vibrio_phage	2.1e-32	58.9
WP_032549081.1\|1574308_1574509_-	hypothetical protein	C3W4P3	Vibrio_phage	1.4e-17	63.1
WP_152468666.1\|1574508_1575138_-	hypothetical protein	A0A1W6UG66	Vibrio_phage	3.7e-35	46.6
WP_152468667.1\|1575272_1575635_+	hypothetical protein	Q858Q3	Vibrio_phage	1.8e-42	72.8
WP_152468668.1\|1575789_1576152_-	hypothetical protein	NA	NA	NA	NA
WP_152468669.1\|1576530_1577037_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152468670.1\|1577159_1578458_+	hypothetical protein	J7I3Z6	Enterobacteria_phage	9.3e-81	40.9
WP_152468671.1\|1578479_1578758_+	hypothetical protein	D0U157	Enterobacteria_phage	1.1e-15	49.4
WP_152468672.1\|1578783_1579011_+	hypothetical protein	NA	NA	NA	NA
WP_152469541.1\|1579288_1579624_+	hypothetical protein	NA	NA	NA	NA
WP_152468668.1\|1579819_1580182_-	hypothetical protein	NA	NA	NA	NA
WP_152468669.1\|1580560_1581067_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152468670.1\|1581189_1582488_+	hypothetical protein	J7I3Z6	Enterobacteria_phage	9.3e-81	40.9

DBSCAN-SWA_4

2568325 : 2575217

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004741508.1\|2568325_2568796_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-31	48.0
WP_032551636.1\|2569051_2570161_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	38.7
WP_032551635.1\|2570271_2570928_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-34	37.3
WP_152469565.1\|2570996_2572082_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-41	33.8
WP_032551633.1\|2572121_2572571_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_152469191.1\|2572696_2573947_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.5e-99	48.2
WP_032551631.1\|2574077_2575217_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.7e-62	42.0

DBSCAN-SWA_5

2786070 : 2798139

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032549782.1\|2786070_2787108_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	7.3e-113	61.9
WP_152469287.1\|2787248_2787740_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	3.2e-26	47.2
WP_152469288.1\|2787872_2790434_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	6.6e-38	23.5
WP_152469289.1\|2790519_2791482_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	2.9e-31	33.8
WP_152469290.1\|2791577_2792528_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	3.2e-06	34.1
WP_150869276.1\|2792560_2793187_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.2e-38	54.5
WP_152469291.1\|2793183_2793930_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.7e-68	53.4
WP_152469292.1\|2793966_2795016_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_152469570.1\|2795038_2795518_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_152469293.1\|2795520_2796222_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_032549794.1\|2796221_2796503_-	cell division protein FtsB	NA	NA	NA	NA
WP_032549795.1\|2796840_2798139_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.3e-135	60.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP045342

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045342_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045342_1

10339-10451

Orphan

Consensus_repeat	Method
TCTGGTTCTACAGGAGGCTGAGGTTCTATTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045342_1

>merge|NZ_CP045342|1|10339-10451|CRISPRCasFinder
TCTGGTTCTACAGGAGGCTGAGGTTCTATTGGGGGTTCTGGCTCAGGGTCTGGTTCAGGCATCACAGGTGGGTCGATCGGGTCTGGTTCTACAGGAGGCTGAGGCTCTATTGG

>NZ_CP045342|1|1|10339-10451|CRISPRCasFinder
TCTGGTTCTACAGGAGGCTGAGGTTCTATTGG	GGGTTCTGGCTCAGGGTCTGGTTCAGGCATCACAGGTGGGTCGATCGGG
TCTGGTTCTACAGGAGGCTGAGGCTCTATTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045342.1\|WP_152471344.1\|12566_13109_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP045342.1\|WP_152471341.1\|5632_5893_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045342.1\|WP_152471352.1\|19073_20507_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045342.1\|WP_152471412.1\|15_303_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045342.1\|WP_152471348.1\|15331_16423_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP045342.1\|WP_152471339.1\|3449_4499_+\|UDP-glucose--hexose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|236963
NZ_CP045342.1\|WP_152471337.1\|1803_2205_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045342.1\|WP_152471346.1\|13882_14266_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045342.1\|WP_152471336.1\|365_785_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045342.1\|WP_152471338.1\|2437_3448_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|182639
NZ_CP045342.1\|WP_152471345.1\|13526_13874_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045342.1\|WP_152471340.1\|4503_5646_+\|galactokinase	unknown	unknown	gnl\|CDD\|179937
NZ_CP045342.1\|WP_152471349.1\|16472_17624_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP045342.1\|WP_152471347.1\|14306_14738_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045342.1\|WP_172974344.1\|18350_18890_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|379226
NZ_CP045342.1\|WP_152471350.1\|17857_18118_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045342.1\|WP_152471343.1\|11208_11706_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP045342.1\|WP_152471344.1\|12566_13109_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	2.55124e-10
NZ_CP045342.1\|WP_152471339.1\|3449_4499_+\|UDP-glucose--hexose-1-phosphate-uridylyltransferase	gnl\|CDD\|236963	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
NZ_CP045342.1\|WP_152471348.1\|15331_16423_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.47128e-42
NZ_CP045342.1\|WP_152471340.1\|4503_5646_+\|galactokinase	gnl\|CDD\|179937	PRK05101, PRK05101, galactokinase; Provisional.	0
NZ_CP045342.1\|WP_152471349.1\|16472_17624_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	7.31937e-60
NZ_CP045342.1\|WP_152471338.1\|2437_3448_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|182639	PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional.	0
NZ_CP045342.1\|WP_172974344.1\|18350_18890_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	3.25809e-05

>NZ_CP045342.1|WP_152471341.1|5632_5893_+|hypothetical-protein
MAQAKNKLEKLATWNYSRRFGNMNAWLNDDEGGVRKVPKDVIQSIINDASSGKFCTVKAVAAKNRVTDATAAKYLRMHNVELKKPL
>NZ_CP045342.1|WP_152471340.1|4503_5646_+|galactokinase
MSNLFDKVQSAFEQIFGEVNTHLIQAPGRVNLIGEHTDYNDGYVLPCAIDYQAAVAAKKSGDNMVQVYSVDYNQTDAFYLDKEITHHPEYMWANYVRGVVKCLQSRGFELGGVNLTVSGNVPQGAGLSSSAALEVVIGQTFKNLFNLEISQAEIALNGQQAENEFVGCNCGIMDQLISAEGVKDHALLIDCRSLETYPIGMPKGMSVMIINSNKKRGLVDSEYNTRREQCEEAAHFFGVKALRDVSLSQLENRRDGLDDVVVKRARHVITENARTLAASKALTEGDMGLVGKLMEESHASMRDDFEITVPEIDYLVGLVKSVIGEQGGVRMTGGGFGGCIVALCPPPLVDDVVTAVTERYQAHTGLKEDIYVCSAENGAG
>NZ_CP045342.1|WP_152471339.1|3449_4499_+|UDP-glucose--hexose-1-phosphate-uridylyltransferase
MSEKFNPVDHPHRRYNPLTGQWILVSPHRAKRPWSGQDEKPSNEQLPAYDENCFLCAGNTRISGDVNPDYKGTYVFKNDFAALMENSPAAPKSNNPLFKVEGVTGLSRVICFSPDHSKTLPELPVKKIRGVVDTWTEQIEELGKDYVWVQAFENKGETMGCSQPHPHGQIWANSFLPNEIERKEKNLKEYYQENGSNLLVDYVKSELEDGSRIVVETEHWVAVVPYWAAWPFETMLMPKTHIRRMSELTDEQRDDLAVAIKKLTSRYDNLFQCSFPYSMGWHYAPFFEEGTDIEHWQLHALFYPPLLRSASVRKFMVGYEMLAESQRDLTAEQAAQRLRDLSDIHYKEQ
>NZ_CP045342.1|WP_152471338.1|2437_3448_+|UDP-glucose-4-epimerase-GalE
MKVLVTGGMGYIGSHTCVQMINAGIEPIILDNLCNSKIAVLNRIEELTGKLPTFYRGDIRESEILDLIFEEQDIDAVIHFAGLKAVGESVAKPVHYYQNNVAGTLCLVESMKKAGVKNLIFSSSATVYGDPAVVPITEGSPTGGTTNPYGTSKHMVERCLMDLVDAESDWSITLLRYFNPVGAHESGRIGEDPQGIPNNLMPFIAQVAVGRRDHLSVFGDNYDTPDGTGVRDYIHVVDLADGHLAALNKLKDKGGLHIFNLGTGNGTSVLQMVEAFGQACGAPIKYETCPRRPGDIAACWASTQKAERELGWKATRTIAEMTADTWNWQSNNPEGY
>NZ_CP045342.1|WP_152471337.1|1803_2205_-|hypothetical-protein
MKKIMPYWAIALMTLNLLVTVVNAAKFTTVIGVFSAYLAISPILLAFKWIHPEWLAIDTEGKMSKHMRAMVLWPITLYEYHSHKRVVKKITVLVEALEQMNGDEIVKTQEWAELIQCRKKLSVFTAKAKKYSK
>NZ_CP045342.1|WP_152471336.1|365_785_-|hypothetical-protein
MSNYGIVELSNRPGSFRARVPMLKKGTYTSKDFSNEKYLHPMTSAQAWRDELGKSTWGEEIWMYIKKTKSVRCLWGKKGGVSVCHKTIEGEGEIWIVMWREKGKPKIMPFLLKDDIEAKKNAEEYAKKKKVELSFLNRI
>NZ_CP045342.1|WP_152471412.1|15_303_+|hypothetical-protein
MLCNECPGSYPGIADIQDISYDVEASIQGVNQKFSLQSGVTSTINLVRDSNGYFGGNGVAKVKFDLEYDRSDSTTTVAIDLNYEDTLTLVFEPVI
>NZ_CP045342.1|WP_152471343.1|11208_11706_-|hypothetical-protein
MRKAAALLCTLASFSSVASSNYQAVAVSDDWSVGLWTNPDTKERTCVVAPTTMNKRTIPAIVFIPKAPGGARANLIASGSFEGIGATYTVDNSSSVTVGLKNRKVPYGHLVTDHEYQLMLERFKDGLTVTYEVFSSNKFVEGGKRTMSLDGFRTAYELAQRCQWY
>NZ_CP045342.1|WP_152471344.1|12566_13109_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKKNGFTLIELVVVIVILGILAVSAAPRFLNLQVDARNATLHAMKGTINGAMGIAYGKLAIQGLENESRVSSADYPDLFSKCGTDEGDISNLCVFRYGYPAADWGTLPALVTNLSAVEGSDWFIHDQNTVSVSGGFMSSIKISPKGFRDTTKCHILYENWLVLVDTAMYSPPKLTVVPCD
>NZ_CP045342.1|WP_152471345.1|13526_13874_-|hypothetical-protein
MVLFALLSTGVFADSIRTSDGISCSFDAGDTPFEIIAYTEKDLADYDGENSYYNDNTESRIGMRLKYKFGGPKRLDCDKLYQMELRDKEARVRQLEEQIRAMEAVNSVDWDIFSK
>NZ_CP045342.1|WP_152471346.1|13882_14266_-|hypothetical-protein
MVKQILIVTLLTLSSLCVAQSQSPSSYGGKSNPTEAVTLTGVKVVPISITNTDDFHQAFDITVNGKVVMETVSLGRGVEQTINVPVRLKAMGIPEKFKICSISKPLASQSMYRIKLCTVAKLLWVKK
>NZ_CP045342.1|WP_152471347.1|14306_14738_-|hypothetical-protein
MKKLILALAVIAASNSVVAATSDNMTFSKTITSACTATVDTPTGALILDGTSSAPAESEQAKVTFSTTANTITYQLSSVSDTGSTTLPGGTTYKLYNDTNVEVSSSQVGVAKGATIGFFVRSDNIVTDAGDYQATAVLEVTCS
>NZ_CP045342.1|WP_152471348.1|15331_16423_+|diguanylate-cyclase
MKAFVYIALASSVIGLAVLDFNVSAVSRIDSMAEFSQAIRNYTSKLNLSAAQDFPYNVPSFAAVHVMKELNDLSVNMKYREVSNNPSNRQNLANDHEKKIIMGAKKSVAQYGFSSDIDHIYLIRYDPIYVKESCLSCHGKVENASAQQHRHYGKKTGYGYKEGDLYGVKVISIDITWFLIRYLAFLVIFVIPVIMWFKGFDKKLTEALNVDSLSGAYNKNYYLKSKDRLIDNGYVLLFDVDDFKNINDTYGHTCGDNVIWQVCELIKSKCRKTDMLFRFGGEEFVLFLKGINSKERVISIVGDIMTEISAHEFVHEGIKFNVTVSIGICKKAPSISTEDAISKADLAMYDVKKHGKNNFKFAD
>NZ_CP045342.1|WP_152471349.1|16472_17624_-|diguanylate-cyclase
MNQDVNLSSKSIIGEIRYKVLHYGYLWVIVTQALLCMTVGYYIVADPRSVSPEYFSTLAISATLLLVSCGVFFLNKPARYYDVLLSTYALLISISAILLTHITASAFLSPDDGKKILLILFLIMLMSWNANRVVLATGTLPIVCFYIYLTSIRPNVIMLDILISAMKFPILSMAFYSMSNKFFELFESKFIENFNQIHRLERVSYVDELTRIKNRKGFNSALRIAIDSARRSKSTLAIVILDIDFFKQYNDTKGHPAGDLCLRNVAAILRSQCKRKIDSVCRIGGEEFALIMPATSAHQAASVVDNIRTALAKTAIEHPKSSISKHVTVSIGIAEFGDKDDFESLYQRADKAMYKAKVAGRNQYIVCLEECAYCHSNSGVKTV
>NZ_CP045342.1|WP_152471350.1|17857_18118_-|hypothetical-protein
MDTQNSDLSQCILDCYVIGYYHDAMFGRMPIVAFIDEGNEKEGLMAPDHITQRSIMACYKAGTYDCLPLKIKNMIQKYEQKCGMEQ
>NZ_CP045342.1|WP_172974344.1|18350_18890_-|outer-membrane-beta-barrel-protein
MNKTLFAVAMTSIVSSASVFAADDVKHEPAKLYVSVGKIDQTADEYIPEPAGFELTFGGDINDYLGVSLSFAKADETYNTVLAETTTFGINVDLGKKFDVNEDFQIKPYGLVGIKETEFTLSNSYAEASDSSAYMGFGLGVRATFKQALVIGFEYVSNSASDDYFPDYDQTKWFVGYQF
>NZ_CP045342.1|WP_152471352.1|19073_20507_-|hypothetical-protein
MFNKKMLATSLTAIMLTACGGGSGSGGSDGTSVSIQGKAIDGYIQGATVFLDLDFDKVLDSNEPHIVTVDEGDFELVVGPDIKECVKYVPVVVDVPIGAIDLDKPEEPIQEAYQMVIPPEFALTTDSDLKNVTPLTSVIWSEVESELRTVTQQPLSCQTLIKGEALRKDIAQRLRDQEVQMHTRYNITAERLYGDYIDTNDTEAHTLAKRLIPGLQKTYKETKAIRDENPSAIAFVEFFLGEYSVEEGYEDKWYRRQFIQPSTGNYTSNVWEMSEDLETRIKLFSQDQLVTVQRNGINVETAHGLIWDSHSSNYQCASAEALESLDKPYSYGINNTVYLSVEDWNTCKAADYEQGSVEQTVLLKTFSGQQGELTNYSHHTYNSATSSGLEYLIGDESLTKAELIAAIKTKGISHDFYDESDYGTSYWFRTRNQWGSDPTQVVTTHDKDGNWQQSHYFANGTHKKLCGQSEETLVPCE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045342_1	1.1\|10371\|49\|NZ_CP045342\|CRISPRCasFinder	10371-10419	49	NZ_CP045342	Vibrio sp. THAF190c plasmid pTHAF190c_d, complete sequence	10371-10419	0	1.0

1. spacer 1.1|10371|49|NZ_CP045342|CRISPRCasFinder matches to NZ_CP045342 (Vibrio sp. THAF190c plasmid pTHAF190c_d, complete sequence) position: , mismatch: 0, identity: 1.0

gggttctggctcagggtctggttcaggcatcacaggtgggtcgatcggg	CRISPR spacer
gggttctggctcagggtctggttcaggcatcacaggtgggtcgatcggg	Protospacer
*************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP045343

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045343_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045343_1

3105-3197

Orphan

Consensus_repeat	Method
GGTCTAAATTGAAATCAAATACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045343_1

>merge|NZ_CP045343|1|3105-3197|CRISPRCasFinder
GGTCTAAATTGAAATCAAATACACCTACATTCAAATCTCAATACCCTTCCTCTCAACCATTGTCCGATTTGGTCTAAATTGAAATCAAATACA

>NZ_CP045343|1|1|3105-3197|CRISPRCasFinder
GGTCTAAATTGAAATCAAATACA	CCTACATTCAAATCTCAATACCCTTCCTCTCAACCATTGTCCGATTT
GGTCTAAATTGAAATCAAATACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045343.1\|WP_152471424.1\|7821_8886_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045343.1\|WP_152471426.1\|10896_11415_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045343.1\|WP_152471419.1\|4643_5105_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045343.1\|WP_152471421.1\|6107_6494_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045343.1\|WP_102353116.1\|2640_3000_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045343.1\|WP_152471423.1\|7495_7771_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045343.1\|WP_152471417.1\|3566_4010_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381603
NZ_CP045343.1\|WP_152471418.1\|4103_4607_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|99751
NZ_CP045343.1\|WP_152471425.1\|9020_10574_-\|DGQHR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379453
NZ_CP045343.1\|WP_152471422.1\|7185_7446_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045343.1\|WP_152471420.1\|5188_5557_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP045343.1\|WP_152471425.1\|9020_10574_-\|DGQHR-domain-containing-protein	gnl\|CDD\|379453	pfam14072, DndB, DNA-sulfur modification-associated. This is family of bacterial proteins likely to be necessary for binding to DNA and recognising the modification sites. Members are found in bacteria, archaea and on viral plasmids, and are typically between 354 and 474 amino acids in length. There is a conserved DGQHR sequence motif.	3.50268e-61
NZ_CP045343.1\|WP_152471418.1\|4103_4607_-\|DnaJ-domain-containing-protein	gnl\|CDD\|99751	cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.	1.50889e-06
NZ_CP045343.1\|WP_152471417.1\|3566_4010_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381603	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.34627e-45

>NZ_CP045343.1|WP_102353116.1|2640_3000_-|hypothetical-protein
MARSRVLQAAIKGDLEKDFAEFQKRTQMNDADAVRDLLTFALRIKLNDSEDTRPSNRELMEEMYRRIRQIQGTGNLTHSQSFDGAAFYSKKDEAGEMRNLVNADVNNKVDEFLSGEKKG
>NZ_CP045343.1|WP_152471417.1|3566_4010_-|transglycosylase-SLT-domain-containing-protein
MRCLLCLLSLFPCFSKAFCFDEAGRYYNVDPRLLKSIATVESSLNPNAYNENKNQSGQVVSRDFGLMQINSHWFDKLSDFNVNETNIYEPCFNVHLGAWVLSSNFASHGYNWNSVGAYNAGFHKRTENARKIYIKKVQSVYYQLNLK
>NZ_CP045343.1|WP_152471418.1|4103_4607_-|DnaJ-domain-containing-protein
MNINDALSILKLNKENETYSRDEVKKVFRKLINQYHPDKEGGDVHFSQLLNQAWESLRKFDQVTFTGEADGQSENLSEILKTAIDQIKNLDGLNIEICGTWIWVTGETKRHKEKLKESKFFYSKNKTAWYFKTGTAKRRGSSKSLDDIRESHGSQVVKRSYKKMLAA
>NZ_CP045343.1|WP_152471419.1|4643_5105_-|hypothetical-protein
MIQPKFYKRELPFIIPVNQEYKTLSGLLSDYQSDVLSGSLEKEIQSIKASGFLSNTKAIVNKNRRWTYQQILSIKSEIINASPVEFGNIELIQDTNFHGVCLTFKYKSLTPSILFQSTKDGFIATAINYNISSLPVKTPSQIKISIRNKKNIH
>NZ_CP045343.1|WP_152471420.1|5188_5557_-|hypothetical-protein
MPVYKLENFDMSEWLEQANWLAADHQSLPAIPLLIQLGLSLDQACELRHDAFCTMGESLHDGLTDYLYKVKGRVSATPSKFTGDALLNHETEALFDRLERIDYWGSEHELDGWWLCNRWDFN
>NZ_CP045343.1|WP_152471421.1|6107_6494_-|hypothetical-protein
MFPSHDKQTVSNDLTATSVSTLDPEGSPKNDNVLIRDILANGWNCMPKELEPIWTDYDGIEVMFCIEHQNQGGDITLEPFLESSLEEGTPVKCWSVFGHCIDGGIECLHDCKTQHEANTLAKYCERMI
>NZ_CP045343.1|WP_152471422.1|7185_7446_-|hypothetical-protein
MKPTIDLALFLSQSLKIDRAFLNDCMSMIANKETLVSLHMYADELAVYINIDAEQIVSQLQDFSCAYIGNPLKHICIKDYQPEPSL
>NZ_CP045343.1|WP_152471423.1|7495_7771_-|hypothetical-protein
MSINNQQFQKVVHGCGHKWLALNEPNYLKYLDCIEYVYANDGYAFVRMTDESSAINLHEELVNRYRRYNQIEVKCRRYDMRLFEVSFELAP
>NZ_CP045343.1|WP_152471424.1|7821_8886_-|hypothetical-protein
MNYSQKLLAEHLQKHPEHNQYVSAIDLSKAERAFHATSFSPERRGVLVVVDYAQRCEGFKVQLNQAITTAKANGIVKVCEQHLEEIHKHFQKEIAQLFINYIHAESVCMSSAITGPANFPVERNKKRLASAMNKYDAIAEREKQLYKRAVKMLLPDGDGTVIKSDSASAVQQLEAKLEQLVKEKEMWIAINKMVRKVYPKGQLKAGATQNDIDELIKDLQTSFGLYEDAAINLLKPCRITSKVVAFPSYSLTNRSQEIKRTEQRIKEQKKLEEGRESNQLNDSLDNGIEYELTEDNKIAIHFTTKPSEEVRSILKSNAFKCSRHRNYAWVRKHTLNAQNAFVREVLPVLKDIAA
>NZ_CP045343.1|WP_152471425.1|9020_10574_-|DGQHR-domain-containing-protein
MLEKMLLNEPFSYRFPATRGLQHKPYFQINVPLSILVKMLNLDDKGSTLERSQRSVNENRAKGFGEYLIRNVKENSFYIFPSIIGVIDTPVNSKPATFFDVYEVLNVKRSNDVNMLSQGVLVVSMDSTIKLFDGQHRSSGSAYAIRKIATDPELKDLDLSNIHVPFMAYTDLTLVERQIGFSDTNNNLSKPPAAISIAYDHRDAMSQFAVELSTELMCFKDMVDFERNAITGANLNYFSLKTIRDATQSFLGLNKKQAKEGLTAEQKEIAKEFWMTFSRHTGWSALNFGLNDARDHRETHLNTYAVFLKALALAAKNILTNFISFDKVDLSKLDDLDVSRWSDDFKDRAFDQVSGKMKPDSTGVMLTANKLQLAVGCPLDIEQAQLEKQYFGEFVQPKVVQQPEPQAEEQEVEEVVFGQMGQDFTTEDATVIATIVGKKWSDTVTEEQIEDAAAKIYKVVGEFAEEDGQASIEFLKDIKQCLVPDSNDNIESDWRALNRINSLRSQLKKFHDECVAA
>NZ_CP045343.1|WP_152471426.1|10896_11415_-|hypothetical-protein
MSCSYVGDLFLAHLKSSLSSIAYSGKLHDVDSLRTFLASLDPNPYCGSPSVGVLNLIRLFHVANHRAYRLRYPHKEVEAFQSYKRRDPSVTPTNHRPKADYKQIVATVKAIDCLIDDCNEDGEGVVPCDSRKCWAHFLELHRIMKNIMIQNCPEYQSAQWRVSDFIEWEKMY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045343_1	1.1\|3128\|47\|NZ_CP045343\|CRISPRCasFinder	3128-3174	47	NZ_CP045343	Vibrio sp. THAF190c plasmid pTHAF190c_e, complete sequence	3128-3174	0	1.0

1. spacer 1.1|3128|47|NZ_CP045343|CRISPRCasFinder matches to NZ_CP045343 (Vibrio sp. THAF190c plasmid pTHAF190c_e, complete sequence) position: , mismatch: 0, identity: 1.0

cctacattcaaatctcaatacccttcctctcaaccattgtccgattt	CRISPR spacer
cctacattcaaatctcaatacccttcctctcaaccattgtccgattt	Protospacer
***********************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045341

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP045338

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP045342

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP045343

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection