CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045349	Pseudomonas sp. THAF187a chromosome, complete genome	2 crisprs	csa3,DEDDh,cas3,DinG,WYL,RT	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045349_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045349_1

4088428-4088528

Orphan

Consensus_repeat	Method
CCTGTAGGAGCCGGCTTGCCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045349_1

>merge|NZ_CP045349|1|4088428-4088528|CRISPRCasFinder
CCTGTAGGAGCCGGCTTGCCGGCGACTACCGCATCGCCCGCAAGCGGGCTCCTACGGGAACTTCGCCAGGCCGCGTACCGTAGGAGCCGGCTTGCCGGCGA

>NZ_CP045349|1|1|4088428-4088528|CRISPRCasFinder
CCTGTAGGAGCCGGCTTGCCGGCGA	CTACCGCATCGCCCGCAAGCGGGCTCCTACGGGAACTTCGCCAGGCCGCGT
ACCGTAGGAGCCGGCTTGCCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045349.1\|WP_152489502.1\|4094988_4095999_-\|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP	unknown	unknown	gnl\|CDD\|235431
NZ_CP045349.1\|WP_037057293.1\|4099651_4101376_-\|acetolactate-synthase-3-large-subunit	unknown	unknown	gnl\|CDD\|180578
NZ_CP045349.1\|WP_152489501.1\|4094362_4094989_-\|protein-methionine-sulfoxide-reductase-heme-binding-subunit-MsrQ	unknown	unknown	gnl\|CDD\|235452
NZ_CP045349.1\|WP_037057275.1\|4099158_4099650_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NZ_CP045349.1\|WP_152489497.1\|4079667_4080909_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045349.1\|WP_037057279.1\|4101777_4102209_+\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP045349.1\|WP_152489499.1\|4081766_4084598_+\|chromosome-partitioning-protein-ParA	unknown	unknown	gnl\|CDD\|274008
NZ_CP045349.1\|WP_167494320.1\|4102556_4103255_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP045349.1\|WP_152489500.1\|4084799_4087100_-\|MCE-family-protein	unknown	unknown	gnl\|CDD\|225553
NZ_CP045349.1\|WP_037057267.1\|4096065_4096881_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
NZ_CP045349.1\|WP_134678210.1\|4078837_4079443_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045349.1\|WP_037055940.1\|4087092_4087710_-\|paraquat-inducible-protein-A	unknown	unknown	gnl\|CDD\|225542
NZ_CP045349.1\|WP_152489496.1\|4077622_4078651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045349.1\|WP_152489495.1\|4075987_4076578_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045349.1\|WP_152489503.1\|4102227_4102557_-\|YqcC-family-protein	unknown	unknown	gnl\|CDD\|377282
NZ_CP045349.1\|WP_037057270.1\|4097028_4098045_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP045349.1\|WP_152489498.1\|4081077_4081770_+\|chromosome-partitioning-protein	unknown	unknown	gnl\|CDD\|319980
NZ_CP045349.1\|WP_152490145.1\|4076564_4077626_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045349.1\|WP_047586646.1\|4087696_4088341_-\|paraquat-inducible-protein-A	unknown	unknown	gnl\|CDD\|377345
NZ_CP045349.1\|WP_134675623.1\|4098170_4099052_+\|HTH-type-transcriptional-activator-IlvY	unknown	unknown	gnl\|CDD\|236961

Protein	Function_ID	Function_description	E-value
NZ_CP045349.1\|WP_152489502.1\|4094988_4095999_-\|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP	gnl\|CDD\|235431	PRK05363, PRK05363, protein-methionine-sulfoxide reductase catalytic subunit MsrP.	0
NZ_CP045349.1\|WP_037057293.1\|4099651_4101376_-\|acetolactate-synthase-3-large-subunit	gnl\|CDD\|180578	PRK06466, PRK06466, acetolactate synthase 3 large subunit.	0
NZ_CP045349.1\|WP_152489501.1\|4094362_4094989_-\|protein-methionine-sulfoxide-reductase-heme-binding-subunit-MsrQ	gnl\|CDD\|235452	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ.	1.10857e-69
NZ_CP045349.1\|WP_134675623.1\|4098170_4099052_+\|HTH-type-transcriptional-activator-IlvY	gnl\|CDD\|236961	PRK11716, PRK11716, HTH-type transcriptional activator IlvY.	6.76716e-154
NZ_CP045349.1\|WP_037057279.1\|4101777_4102209_+\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	3.10894e-14
NZ_CP045349.1\|WP_037057275.1\|4099158_4099650_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	1.86066e-91
NZ_CP045349.1\|WP_152489500.1\|4084799_4087100_-\|MCE-family-protein	gnl\|CDD\|225553	COG3008, PqiB, Paraquat-inducible protein B [General function prediction only].	6.66201e-162
NZ_CP045349.1\|WP_037057267.1\|4096065_4096881_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	2.81008e-69
NZ_CP045349.1\|WP_167494320.1\|4102556_4103255_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.99822e-09
NZ_CP045349.1\|WP_037055940.1\|4087092_4087710_-\|paraquat-inducible-protein-A	gnl\|CDD\|225542	COG2995, PqiA, Uncharacterized paraquat-inducible protein A [Function unknown].	2.54056e-74
NZ_CP045349.1\|WP_152489503.1\|4102227_4102557_-\|YqcC-family-protein	gnl\|CDD\|377282	pfam04287, DUF446, tRNA pseudouridine synthase C. This family is suggested to be the catalytic domain of tRNA pseudouridine synthase C by association. The structure has been solved for one member, as Structure 2HGK, which by inference is designated in this way.	1.92497e-47
NZ_CP045349.1\|WP_152489498.1\|4081077_4081770_+\|chromosome-partitioning-protein	gnl\|CDD\|319980	cd16336, MukE, bacterial condensin complex subunit MukE. MukE is part of the MukBEF condensin complex that is mainly found in proteobacteria and is involved in chromosome organization and condensation. The complex is believed to serve as a part of the chromosome scaffold rather than a bulk DNA packing protein. MukE and MukF form a stable complex with each other and dynamically associate with MukB, a member of the SMC protein family. MukEF does not bind DNA on its own but modulates MukB-DNA activity. The stoichiometry of the MukEF complex is MukE4F2.	7.75073e-05
NZ_CP045349.1\|WP_037057270.1\|4097028_4098045_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_CP045349.1\|WP_152489499.1\|4081766_4084598_+\|chromosome-partitioning-protein-ParA	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	6.80537e-09
NZ_CP045349.1\|WP_047586646.1\|4087696_4088341_-\|paraquat-inducible-protein-A	gnl\|CDD\|377345	pfam04403, PqiA, Paraquat-inducible protein A. Paraquat is a superoxide radical-generating agent. The promoter for the pqiA gene is also inducible by other known superoxide generators. This is predicted to be a family of integral membrane proteins, possibly located in the inner membrane. This family is related to NADH dehydrogenase subunit 2 (pfam00361).	3.42882e-53

>NZ_CP045349.1|WP_047586646.1|4087696_4088341_-|paraquat-inducible-protein-A
MSAPLSSLPVHELVACHECDLLMRKPQLADGESAQCPRCGYELFSHRHQVVRRSLALVMAALLLYIPANFLPIMQLNLLGQTSQDTVWSGVLGLYDSGMQAIAVVVFLCSMAVPLLKLLCQLLVLLSIRLDFGRSYGLLLYRIYHHLREWGMLEVYLMGILVAMVKLMDLADLSLGLGLFCFTALLLIQIWLEVTMSPQQIWQALSGEDVHACD
>NZ_CP045349.1|WP_037055940.1|4087092_4087710_-|paraquat-inducible-protein-A
MRAIDAGLLVCHECHQLNPIEPEVEHQHCSRCGGLVHARRPNSLVRTWALLLTSALLYIPANVLPIMTINSLGKGAPATIMEGVVELLQHGMLPIAAVVFIASILVPTFKLVGIALLLYSVQRHQPMSARQRILMYRFIEWIGRWSMLDIFVIAILVALVNFGSLASIEAGAGAAAFASVVILTMLAALTFDPRLIWDNTETNHD
>NZ_CP045349.1|WP_152489500.1|4084799_4087100_-|MCE-family-protein
MTDLPMAKTRPASNWSAIWVLPLIALLIGGWLAWRAYSEAGIQVELIFASGEGIQAGKTELMYKGMAVGKVVSISLDQTGKNRGVVAQLEVNKDLEQYLRKGTSFWLVKPNVSLAGISGLETLVSGNYITFNPGDGEASRTFTALTQEPPMSDDVPGLHLTLKADRLGSLNRDSPVFYKQIQVGRVKSYTLGDDESTVEVKVFIEPEYASLVRKHTRFWNASGISIDADLSGFKLRSESLASIVAGGIAFATPEHRKDSPPTDPSLPFRLYESYDAAQAGIKVVVKLTDFDGLQEGRTPVMYKGIEVGTLKTMKIDRDLASATAELTINPLAEDYLVEGSEFWVVKPSISLAGITGLEALVKGNYIAVRPGEKGSPPARNFVARSKAPPLDLGAPGLHLVLFSDQLGSIEVGSPVLYRQIKVGSVQSYQLSRDNSQVVLGVHVEPDYVHLVNTSTRFWNASGITLKGGLSGVEVKSESLQTLLAGGIAFETPNPEAPASGRQVQRFALHADRNSALQPGTQIRIRVNDGDGLQPGTLIRYKGLEVGKVESLALTDDLQAVMLDVRLTQAAGQIAREGSCFWVVKPELSLTRAANLGTLVSGQYLEVLPALQGGAQRLQFTALDGPPNQAVREQGLRLVLSAPRRGSIKPGVVVSYREVPVGKVVDFELGPTSDRVLIHVLIEPRYAPLVRSGSRFWNASGIGVDAGLFKGVKVRTESLEALIEGGIAFATPNNPEMGGPAQPGQTFALFDEPQDAWMQWAPKIVLE
>NZ_CP045349.1|WP_152489499.1|4081766_4084598_+|chromosome-partitioning-protein-ParA
MSQERYGIRRFALLNTAGYSLGLFPLENPLSVYGANNLGKSASINALQFPILARMSDMSFGKYSLEASRKFYFASDTSYILVEVSLPHGPHVIGVAGRGPGGGFGHQFFAYAGELDLEHYQSNGTCLRQRELFKNLGQAGITAYELKPDELRRLLVGGHTSIPLDLTLIPLRSTSEQSLKTFRALFINLLHMREITAAKLKQLFLDAFEHSLRSGSVDYIAATEEAFRDVRRMEQDYQALVTAGPLIEALATGVDQREILRGKLHRLSPLLDNLLGTWHDYADARKEELVIQAEHYRNEQDGLQNEQRGGTAELMRLEREISEIQRWLGELAVLKNRFALVENAKVLEEQLLAAKDAHDELAGALAQSRQFSSEDLDERLRDLEKRLKSIKQQLDHADNNSYSRLREEFSQQDVDRLMRLFNGQLFSLPLGEKGIQADGDDWVKAVEAVLDRFKGDTFAVPGLSIDLSHIEPPALQALADRAALRDQKDRLERELKQLKTQQSVAADRAASKAQAETLYQAVLDAQKALEDFRKSQTLAAEEPQRLERLAELEGAQDELKRASDAFAERVQQLSAKLQLISRQIGDLESKERTLEDALRRRQLLPADLPFGTPFMEPVDDSLDNLLPLLNDYQDTWQALQRIDGQIEALYAQVRLKGVAKFDSEDDVERRLQLLVNAYAHRQDEALTLAKARRAAVTDIARTLRNIRSDYDNLEHQLALFNREINKRQVSNLQSFRIVLAPNKEALRHIDQIIHSAGQYEEGETLSVFDLSQSAEQDARNEEAKDYLSRLVAANGNQLGLKDLFELAFEITKVHGQPVIHTDIDGAASNGTTMTIKALTNMYLLLHLMDREQAGRVRLPYYLDEAADIDERNQQALIETSLQLGFVPILASVKPQVSAHVAIDLEGGSGPNGIYIDEADWKFIKPRENAKAQAPEQAETAEPA
>NZ_CP045349.1|WP_152489498.1|4081077_4081770_+|chromosome-partitioning-protein
MNIDLKEMTQLAAAFRDLFKGYHISRSEPECYAQLSSMQDQYRALFRALGFELVCDPRGFYYFVPEQVAPQVNKTAQRLALFTFILVEHLADQGRDPLSVLDGGSIGRDELPALLEKYRDLFLQAEVTTFEELEDKIIRRLTQLGFAEDSNGVYRFLPPMHRFLDVCLSVQHDRDLAASLHSSDLPLPAPVLLDDDGDAAVADASGTEESEEDALARAMAEERAAQEMDA
>NZ_CP045349.1|WP_152489497.1|4079667_4080909_+|hypothetical-protein
MIDPKRVLRALAEHWTLLEPLCERFDTGTLSLVELRGQLAAQLPDATPGDTTALLDTWIRLDILVPVAKSPNRFELNAQIHDFLAYLRREHRLGLCLEIEAYLRHLERLAGYIQDAFEVRDANDLARQLRLLDMRVRDVLKKLANDEQALASVADRAKTSDRQIPLRQRYAEVLATWDEYVEPMIQLVAADGAFEQGVRRVEQVLLRLLGDQQRLGQLVDDDLLLRTHARILEMQTTAQLTLRKARELLLPLREEARRHNAVTRGAALALSVVRKKGIDAVPQAALPLFTRPQSNFLGSASQVEAYVYALARFEAKPAHFPKASSSRKGGAPKAPKTAREMIERCEQALPLPDLMTWLLEQEPEGATDELLYWFSRLSREGRFQRDRLQRQTYLTREHEISISSYALVGRPDV
>NZ_CP045349.1|WP_134678210.1|4078837_4079443_-|hypothetical-protein
MSALALNVDARWHELQHQRDLDWDLHAITDRAQAIAFLRRFENRLCIYSSYVEKLYSNYSFVVPQDEQGGITILPDEMAWHDIFHDIPADAVEPTGVHVLPGEAIGCDGLYIKVPGESRLVASRELPFQEGLRLLIERYRQRGEHFLPVLVKGDLREYEARMPSLHLHRINPSKLGHCSRLSIDAIRSAIAEHLLSLFRQR
>NZ_CP045349.1|WP_152489496.1|4077622_4078651_-|hypothetical-protein
MRRSFRFARHALAVVCAGVLSAQVQAKMVELEDSELSDITGQAFINLTTDSNAGINYTRVNLGLNIDTQLNVKKLQLGQYTRPGEAAGSSDILINNFALGTVGPNDTINPFKISNPFLELAYEGDRVVGVRIGFGEAKGTLSGDIQSLTGNIPVHIKGTGDAIYDKATFAQRAALVLAGVYRSSTVEADAILVNSGGTADPVRGTMAGIKNGDGLTCTSGCAGGWTDALLGVFASGNCSILGIQTCFNLSQFQSLPVGNTSDMSNMQNAAKGFFISLQTQDVAWRDMDSNAFITALQGAFMNLPKYRDTNGNLVSPINIDFDQAFNGIPRQDTCVGSATAGC
>NZ_CP045349.1|WP_152490145.1|4076564_4077626_-|hypothetical-protein
MNMRNGVLLMALLHAGTTLAMEPLSDAEMSDVQGAGLGFVLDQVLLDGSGAQIVINDITDGQGRNVPISLKNLYLGAAGSDKGSNLNPVTIGSLDHPFELELAKGEELRSLRDDGQWVQTTPNDITVLSLKFPERLVSGGNPCIASYAGAGSNCSTGPSGRADLGMRFDFQVSAGRTEMLALDIHQLVMDGSYLRLWGDPGQNGNGELVGEARINIFAKTLEVMSCAQANCDTAGETAAQRGARTLYITNGYANIALGYGKSQPLRLRASADGQFVLELQNPTATGTTAAQRQALASDFYANAPRTNLVFENLTMGGTRSSPTAVPTGGYNFGRNEISGLSFNYLKVSSYDLR
>NZ_CP045349.1|WP_152489495.1|4075987_4076578_-|hypothetical-protein
MTCVSRAIAMLALLPGLALAEMQALDDDTLSELSGQGGVYLSGEFSINKNGGVLWDTPVSNNPAQWTANQRSCALVGASSPESCGMRVAVRSGANAGWYVLDNIKGIFSFEGLTLDTRTLTSAGGEREVLALGLPNEIRFKDGNFAFAVASQGGWKNKALSAANGGDPSYQQTTIFSAKIDGSIRMQGSVLVFPTN
>NZ_CP045349.1|WP_152489501.1|4094362_4094989_-|protein-methionine-sulfoxide-reductase-heme-binding-subunit-MsrQ
MRYRFWRVGVFLAASAPPLYWLYLALFGQLGPDPGKTLVDNLGLGALILLLITLAMTPLQQLSRWGGWIAVRRQLGLWCFTYVTLHLLGYVLFIAGLRLDLVLRDLYERPYIIVGALAFLGLLALAVTSNRFSIRKLGRRWKALHRLVYGILLLALLHMLWVVRADLGEWLAYALIGGALLAMRFSVVAKALQRAGTSLRENPKKVAI
>NZ_CP045349.1|WP_152489502.1|4094988_4095999_-|protein-methionine-sulfoxide-reductase-catalytic-subunit-MsrP
MLIRVPSSSRALESEVTPESVYLSRRKLMQGSLALAAMAAMPGWASAEPQGVYADVEPAKAPGWFDEKLSATRWQAMTVEGESITPFRDATHYNNFYEFGTGKGDPAARAGSLQVEPWSVTVDGEVGKPGRYAIEDLVKPHAFEERIYRLRCVEAWSMVIPWLGFPLADLLKQVEPTSSARYVRFETLVDHEHMPGQRSGFSLIDWPYVEGLRMDEAMQPLAFMAVGMYGRVLPHQNGAPLRLVVPWKYGFKSIKSIVRISLVAEAPATTWEGIAPNEYGFYANVNPQVDHPRWSQATERRLPSGLFSPNVIDTRMFNGYDEVAGLYAGMDLARYY
>NZ_CP045349.1|WP_037057267.1|4096065_4096881_-|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MSEGPEDQKPAGDNLESLLPIDEHIEEGQDAEGRKVRHRGIYLLPNLFTTANLFAGFYSIINAMNGNFYVAAATVFVAMVLDSLDGRVARLTNTQSAFGAEYDSLSDMVAFGVAPALLAFEWALGSMGKVGWMVAFIYVAGAALRLARFNTQIGSVDKRYFIGLASPAAAGVVAGTVWAFSDFGIKGSNMSFAVALLVAAAGCLMVSNIKYYSFKDLDLKGRVPFVAILAVVLVFAVVFSDPPRILLLIFLAYAVSGPIQYLLQLRRRKSV
>NZ_CP045349.1|WP_037057270.1|4097028_4098045_-|ketol-acid-reductoisomerase
MKVYYDKDCDLSIIQGKKVAIIGYGSQGHAQACNLKDSGVDVTIGLRKGSATVAKAEAHGLKVTDVASAVAAADLVMILTPDEFQGQLYKNEIEPNIKQGATLAFSHGFAIHYNQVVPRADLDVIMIAPKAPGHTVRTEFVKGGGIPDLIAVYQDASGNAKNVALSYASGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGEYVTGPEVINAESRQAMRNALKRIQDGEYAKMFISEGATGYPSMTAKRRNNAAHGIEVIGEQLRGMMPWIAANKIVDKTKN
>NZ_CP045349.1|WP_134675623.1|4098170_4099052_+|HTH-type-transcriptional-activator-IlvY
MDSHSLRLFLSLADNLHFGKTSREQHVSPSALSRSIKQLEEELGATLFVRDNRSVRLTREGQQFREYASDVMNGWQAIRQTFMQDQQSLHGELSLYCSVTASYSFLYDILSSFRQDYPRIEMKLHTGDPAKAVERVQQGLEDLAIGARPNNLPAGVDFQSITRSELRFIGPQSPQLLSDEQLRQPTADSWKDVPMILSEEGLARTRTDRWLKSHNIKPRIYAQVSGNEAIVSMVSLGFGIGVVPQIVLDNSPLTARIRIYDIQPPLAAYDIGLFALEKRLKDPLIAAFWNRQR
>NZ_CP045349.1|WP_037057275.1|4099158_4099650_-|acetolactate-synthase-small-subunit
MRHIISLLLENEPGALSRVVGLFSQRNYNIESLTVAPTEDPTLSRLTLTTVGHDEVIEQITKNLNKLVEVVKLVNLSESAHIERELMLVKIKATGAQRAEVKRTTDIFRGQIVDVTSSVYTVQLTGTSDKLDSFIQAIGTASILETVRSGVTGISRGDKVLSI
>NZ_CP045349.1|WP_037057293.1|4099651_4101376_-|acetolactate-synthase-3-large-subunit
MELLSGAEMVVRFLRDEGVKHIYGYPGGALLHIYDALFKEPEVTHILVRHEQAATHMADGYARATGKAGVVLVTSGPGATNAITGIATAYMDSIPMVVISGQVPSAMVGTDAFQETDMVGISRPIVKHSFIIKHPSEIPEVLKKAFYLAESGRPGPVVVDIPKDMGDPTQKFEYVYPKKVKLRSYSPAVRGHSGQIRKAAEMLLAAKRPVMYSGGGVIMGGASAPLTELAQMLNLPVTNTLMGLGGYPGTDRQFLGMLGMHGSYTANLAMHHADVILAVGARFDDRVINGAAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVDSVLTEMVAILKEIGETPNKDTVASWWKQIDEWRGSGRLFPYNEGDGSIIKPQSVIETLCEVTRGDAYVTSDVGQHQMFAAQYYRFNKPNRWINSGGLGTMGFGFPAAMGIKLNFPDADVACVTGEGSIQMNIQELSTCLQYDLPVKIVNLNNGALGMVRQWQDMQYNSRYSHSYMESLPDFVKLAEAYGHVGMRITQLKDLKSGLEEAFAMKDRLVFLDIAVDDSEHVYPMQIRDGAMRDMWLSKTERT
>NZ_CP045349.1|WP_037057279.1|4101777_4102209_+|DUF4124-domain-containing-protein
MRHMILTGSLMLALSATAMASQVYKWVDDNGVTHFGAQPPQGQQSTTINTSAPPPAPAPSVPAPAVEQADPEQAAIDKKVKQDVAKREAERKKYCEEARTSLAQLENNPRVRVEVEGELRRIDEDERQERISELKKSITETCK
>NZ_CP045349.1|WP_152489503.1|4102227_4102557_-|YqcC-family-protein
MDARVNELAEHLLLIERELRVLGWWQEQAPSAEALASQEPFCVDTLTFEQWLQWIFLPRMKQLLEAGAALPSVSGIQPMAEMVYREQSGVARRLLELLGEFDRLLTRTS
>NZ_CP045349.1|WP_167494320.1|4102556_4103255_-|hypothetical-protein
MNKKWLVALLATTTLAGCSTVPRGSIPVVDAGTPLSAGRVSDNAASAPAGAQSQPFEEDSGVVVMVPQGAASAPLQTGPQGAPANGGLTFDEPPVSMGQGGFDSSSVPSAPSGIPSGGGLAADEQLDGPVLALLTTAQQQQGGGDLNGAASSLERAQRIAPREPQVLYRLAEVRLAQGDAAQAEQFARRGLTYASGRPALQASLWNLIAQARERQGDSAGAAQARERARVSL

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Crispr_ID: NZ_CP045349_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045349_2

4769598-4769712

Orphan

Consensus_repeat	Method
ACCCTTCGGGCCGTCGCGAGGCGACGTCAAAAATCGCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045349_2

>merge|NZ_CP045349|2|4769598-4769712|CRISPRCasFinder
ACCCTTCGGGCCGTCGCGAGGCGACGTCAAAAATCGCTCCCGGCGATTTTTTGTGGCCTGCCATCCCTGGCGGCGACCCTTCGGGCCGTCGCGGGGCGACGTCAAAAATCGCTCC

>NZ_CP045349|2|2|4769598-4769712|CRISPRCasFinder
ACCCTTCGGGCCGTCGCGAGGCGACGTCAAAAATCGCTCC	CGGCGATTTTTTGTGGCCTGCCATCCCTGGCGGCG
ACCCTTCGGGCCGTCGCGGGGCGACGTCAAAAATCGCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045349.1\|WP_134676520.1\|4762218_4762812_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP045349.1\|WP_152489810.1\|4769761_4770490_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
NZ_CP045349.1\|WP_152489808.1\|4763390_4764545_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP045349.1\|WP_037056578.1\|4765476_4766820_-\|DUF1329-domain-containing-protein	unknown	unknown	gnl\|CDD\|377764
NZ_CP045349.1\|WP_037056587.1\|4769081_4769453_-\|DUF423-domain-containing-protein	unknown	unknown	gnl\|CDD\|225238
NZ_CP045349.1\|WP_152489813.1\|4776775_4778236_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP045349.1\|WP_150606874.1\|4765040_4765469_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|236715
NZ_CP045349.1\|WP_152489814.1\|4778235_4778841_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|367574
NZ_CP045349.1\|WP_152489812.1\|4773845_4775270_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP045349.1\|WP_037056584.1\|4768733_4768934_-\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|168159
NZ_CP045349.1\|WP_134676418.1\|4772164_4773181_-\|cell-division-protein-FtsX	unknown	unknown	gnl\|CDD\|225088
NZ_CP045349.1\|WP_152489809.1\|4766982_4767699_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP045349.1\|WP_037056445.1\|4771166_4772021_-\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NZ_CP045349.1\|WP_152489811.1\|4770496_4771105_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045349.1\|WP_152489815.1\|4778984_4779965_+\|hydrolase	unknown	unknown	gnl\|CDD\|223506
NZ_CP045349.1\|WP_037056449.1\|4773180_4773849_-\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
NZ_CP045349.1\|WP_037056572.1\|4764638_4764962_+\|DUF3392-domain-containing-protein	unknown	unknown	gnl\|CDD\|378746
NZ_CP045349.1\|WP_152490154.1\|4762832_4763360_+\|DUF3916-domain-containing-protein	unknown	unknown	gnl\|CDD\|372464
NZ_CP045349.1\|WP_037056582.1\|4767919_4768714_-\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NZ_CP045349.1\|WP_037056455.1\|4775412_4776786_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685

Protein	Function_ID	Function_description	E-value
NZ_CP045349.1\|WP_134676520.1\|4762218_4762812_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	2.91514e-112
NZ_CP045349.1\|WP_152489810.1\|4769761_4770490_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	8.14061e-126
NZ_CP045349.1\|WP_152489808.1\|4763390_4764545_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP045349.1\|WP_037056578.1\|4765476_4766820_-\|DUF1329-domain-containing-protein	gnl\|CDD\|377764	pfam07044, DUF1329, Protein of unknown function (DUF1329). This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica.	1.38722e-179
NZ_CP045349.1\|WP_037056587.1\|4769081_4769453_-\|DUF423-domain-containing-protein	gnl\|CDD\|225238	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown].	1.20644e-31
NZ_CP045349.1\|WP_152489813.1\|4776775_4778236_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	8.78435e-92
NZ_CP045349.1\|WP_150606874.1\|4765040_4765469_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	9.08318e-36
NZ_CP045349.1\|WP_152489814.1\|4778235_4778841_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	3.14823e-75
NZ_CP045349.1\|WP_152489812.1\|4773845_4775270_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_CP045349.1\|WP_037056584.1\|4768733_4768934_-\|sulfur-carrier-protein-ThiS	gnl\|CDD\|168159	PRK05659, PRK05659, sulfur carrier protein ThiS; Validated.	3.33529e-35
NZ_CP045349.1\|WP_134676418.1\|4772164_4773181_-\|cell-division-protein-FtsX	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	6.42216e-85
NZ_CP045349.1\|WP_152489809.1\|4766982_4767699_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	5.88833e-100
NZ_CP045349.1\|WP_037056445.1\|4771166_4772021_-\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	0
NZ_CP045349.1\|WP_152489815.1\|4778984_4779965_+\|hydrolase	gnl\|CDD\|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	6.04883e-126
NZ_CP045349.1\|WP_037056449.1\|4773180_4773849_-\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	3.64088e-122
NZ_CP045349.1\|WP_037056572.1\|4764638_4764962_+\|DUF3392-domain-containing-protein	gnl\|CDD\|378746	pfam11872, DUF3392, Protein of unknown function (DUF3392). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	2.63096e-41
NZ_CP045349.1\|WP_152490154.1\|4762832_4763360_+\|DUF3916-domain-containing-protein	gnl\|CDD\|372464	pfam13079, DUF3916, Protein of unknown function (DUF3916). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 170 amino acids in length. There is a single completely conserved residue S that may be functionally important.	1.09845e-32
NZ_CP045349.1\|WP_037056582.1\|4767919_4768714_-\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	3.64531e-165
NZ_CP045349.1\|WP_037056455.1\|4775412_4776786_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.63949e-107

>NZ_CP045349.1|WP_037056587.1|4769081_4769453_-|DUF423-domain-containing-protein
MARLWLLLSAFAGFTGVALGAFAAHGLKHKLTPDYLAVFQTGTHYQLVHALALFGVGLLALHVPGRLVNLAGTAFAVGIVLFSGSLYGLTLSGIGKLGMITPFGGVAFLVGWLCLGLSAWKMT
>NZ_CP045349.1|WP_037056584.1|4768733_4768934_-|sulfur-carrier-protein-ThiS
MRIQLNGEPFELPENQSVADLLVRLDLTGRRVAVELNLDIVPRSQHDSTPLAEGDQVEVVHAIGGG
>NZ_CP045349.1|WP_037056582.1|4767919_4768714_-|thiazole-synthase
MSQVRSDKPFVLAGRTFQSRLLVGTGKYKDMDETRDAIAASGAEIVTVAVRRTNIGQNPGEPNLLDVISPDKYTILPNTAGCFDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVIETIKAAEVLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEGVLLNSAIAHAQDPILMARAMQHAVEAGRLAYLAGRMPKKLYASASSPLDGLIK
>NZ_CP045349.1|WP_152489809.1|4766982_4767699_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MTDTQQPELTEDGRQRRTIKSFVMRAGRMTEGQQRGLDKGWPLFGLELEDGLRDFDQVFGRSAPRTFEIGFGMGHSTLEMAAAAPEHDFIGVEVHKPGVGALLNGVMTQNLGNLRVYSCDALEVLRDCVADASLDRVLLFFPDPWHKARHHKRRIVQPAFAELVRSKLKVGGVLHMATDWENYAEHMLEVMNAAPGYRNLAADGTYVPRPEERPVTKFERRGERLGHGVWDLKFQRQE
>NZ_CP045349.1|WP_037056578.1|4765476_4766820_-|DUF1329-domain-containing-protein
MLRSVSLLLLTALAFQAQAKIDASQAARLGQDLTPLGGERAGNASGTIPAWTGGLATPPAGYRPGMHHPDPYADDKLLYRVDSQNLAQYEQLLPVGLKTLLQQNPSFYLRVFPTRRSAAAPQRIYDATRFNALNAELISGGNGVQGAAAGVPFPLPQNGQEAIWNHIMRYRGDQISMATNQAAVLANGSYNLLKLERDIYFLYGRDGVAPQDLDNTLFYYKYKVVAPAKLAGSALVVQETLDQVLAIRKAWRFNRGERRVRRLPMLAYDTLQPDTNGMATADQVDSYNGAPDRYEWQLLGKREMLMPYNSYAVHQRGIPYADILQAKHVNPELLRYELHRVWVVEAELRKGFSHPYGKRRFYLDEDSWQILAVDLYDRSGALIGLQEAHPISYYDVPMFGSTLETIYDLKGGRYFADGLDNNEPMYDFNAKLSPRDFTPQALRREGN
>NZ_CP045349.1|WP_150606874.1|4765040_4765469_+|GNAT-family-N-acetyltransferase
MIRPYLNTDCDALLDIWLSASLQAHDFVPEAFWRDQLGAMREHYLPLAETLVLEQGGTPLAFASVHEGRLAALFVSPEQQGCGLGLQLLEAVMAERTRLELDVYQANGRATAFYRRAGFEVIAQGHDPHTGQAQLTMAWSRP
>NZ_CP045349.1|WP_037056572.1|4764638_4764962_+|DUF3392-domain-containing-protein
MDLLLDLIVTLSRWSRSHLSDISLAIMATLLVLFGPLINAWVQRTIGNLNFVLRTLLFVIFCAVGYGLAIIFLTPWLTKGLTYFNNFTLAPVLILIFVVIGILADRN
>NZ_CP045349.1|WP_152489808.1|4763390_4764545_+|radical-SAM-family-heme-chaperone-HemW
MPNVSHFLLPPLALYIHIPWCVRKCPYCDFNSHAAGPTLPEEEYVNALLADLDSDLQHAHGRPLTSIFFGGGTPSLFSDRALGRLLEGVERRIAFADDIEITLEANPGTFEQAKFKGYRSLGINRLSIGVQSFQEAKLKALGRIHNGDEAIRAADMARAAGFDNFNLDLMHGLPEQSIEDALFDLRTAIAQAPTHLSWYQLTMEPNTVFWSQPPQLPEDDLLWDIQEAGQALLAAEGYAQYEVSAYARPGRQARHNLNYWTFGDFLGIGAGAHAKRSTPDGRILRTWKTRLPKDYLDPSKAYQAGERVLDAEELPFEFLMNVLRLTEGAPVELFSQRTGLPLAQLDGARREGERLGLLQADDRRLVATARGQLFLNDLLQLFLA
>NZ_CP045349.1|WP_152490154.1|4762832_4763360_+|DUF3916-domain-containing-protein
MLSKKPRGVARRLKALDHWAARFEDNFPQSIPAGERYWNWKIPVLFSLVEGRHTNPQIQARCAQALINACQHLMRSKPPEAENWRVTAVICLPDFFTSEVCLYLDEDYFQAHTRASVSEYGNSRHLTPLSLSKAWSLQLADGCGELGTEIDYLDEDQPNGRFIAQRWYFGEVMPR
>NZ_CP045349.1|WP_134676520.1|4762218_4762812_+|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MNGFKELVLASHNAGKLKELQAMLGDAVRVRSIGEFSQVEPEETGLSFVENAILKARNAARISGLPALADDSGLAVDYLGGAPGIYSARYADGKGDAANNAKLLDALKDVPDAQRGAQFVCALALVRHADDPLPILCEGLWHGSILHEARGEHGFGYDPLFWVPESGCSSAELPAEQKNRLSHRARAMALFKQRLGL
>NZ_CP045349.1|WP_152489810.1|4769761_4770490_+|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MLRALTRRLLKLLLWLILASVLLVLALRWVPPPGTALMIERKIESWGSEQPLELKRQWRPWNELPDSLKMAVIAAEDQKFANHWGFDLGAIQAALQHNQNGGSLRGASTLSQQVAKNLFLWSGRSWLRKGLEAWFTALIELLWSKERILEVYLNSVEWGDGVFGAEAAAQQHFGVGAPYLNRQQASQLAAVLPNPLRWSAGRPDGYILRRSAWIRQQMNQLGGGHYLNQLKPSYPDWWPGWL
>NZ_CP045349.1|WP_152489811.1|4770496_4771105_-|hypothetical-protein
MNKPPLRAQHGLLFIVVAVLFFAWGAWLMRGTEVQPVANLQTWRDAFLQPLADDHLQLADLLRLAPGELWLEPRLDGARLSYRARLQGEEGEWSLQAVLALSDSQRDSLMAAQGLRPGDAEQVLPAVLVEQMARFSIASLNLGAPASLASERLAASLGQPRLSLELAEGQAWVYPQWGLTVHLSGDDIALLHALPRKAFRSR
>NZ_CP045349.1|WP_037056445.1|4771166_4772021_-|RNA-polymerase-sigma-factor-RpoH
MSTSLQPVHALVPGANLEAYVHAVNSIPLLTPEQERELAENLYYQQDLEAARQMVLAHLRFVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIRAEIHEFILKNWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNDEVTAVAESLGVEPHEVREMESRLTGQDMAFDPAADADDDSAYQSPAHYLEDHRYDPARQLEDADWSDSSSSNLHEALESLDERSRDILYQRWLAEEKATLHDLAAKYNVSAERIRQLEKNAMNKLKGCIAA
>NZ_CP045349.1|WP_134676418.1|4772164_4773181_-|cell-division-protein-FtsX
MSASKMPTPQPAERVGAAPRNKVAARPADEPDFRTLFHAWLESHRASIVDSLRRLARQPIGSFFTCLVMAVALSMPMGLSLLLDNVEKLGGSWQRAAQISLFLELSASEREGEALREQIKAMDDVADVEWISREQALEEFQQLSGLGQALKELPENPLPGVVLVTPKEVDKAKLEALRQRLAELPKVEQAQLDLVWVERLTAILKLGDRFVFGLSVLLILALLLVIGNTIRLHIENRRAEIEVIKLVGGTDGYVRRPFLYMGALYGFGAGVFAWLLLAFGLDWLNDAVVRLAGLYGSDFALGGVPSGDGFSLLLGAVLLGYIGAWLAVARHLNELAPR
>NZ_CP045349.1|WP_037056449.1|4773180_4773849_-|cell-division-ATP-binding-protein-FtsE
MIRFEQVAKRYPNGHVGLHELTFRVRPGEFLFVTGHSGAGKSTLLRLLLAMERPTSGKLLLAGQDLSTITNAQIPFLRRQIGVVFQNHQLLFDRTVYDNVALPLQILGLSKPDIARRVGSALERVSLSDKAAQAPGDLSTGQQQRVGIARAIVHRPALLLADEPTGNLDPRLAAEIMGVFEDINQLGTTVLIASHDLALIARMRQRMLTLQRGRLIGDGEAA
>NZ_CP045349.1|WP_152489812.1|4773845_4775270_-|signal-recognition-particle-docking-protein-FtsY
MFGSNDDKKSPADAGAQNPPVTEEKKSLFSWWRKKPTASTPESAPEPVPGVADEAANAPAAEVQETPAPRLDTLPEPQPQPQPQPQPQPQPEAPAPVVDATPVVPSPAAAPAPVVEAAPNPAVVPVAEPTPSPAVAAVPEPVAVAEPAAPVPQAPATPVAATQDKPGFFARLKQGLSKTSASLGEGMASLFLGKKAIDDDLLDDLETRLLTADVGVEATTAIIGNLTKRVARKELADSGALYKALQEELVTLLKPVEQPLQIDSAKQPYVILVVGVNGVGKTTTIGKLAKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNNIAVIAQHTGADSASVIFDAVQAAKSRGVDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDDTAPHEVLLVLDAGTGQNAISQAKQFNQTVNLTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRPFQAQDFVQALFEERERG
>NZ_CP045349.1|WP_037056455.1|4775412_4776786_+|insulinase-family-protein
MNAIARRSLGLLFGALCAPMVAFASPAQPTHEFSLDNGLKVIVREDHRAPVVVSQLWYKVGSSYETPGSTGLSHALEHMMFKGSAKLGPGEASQVLRDLGAEENAFTSDDYTAYYQVLASDRLGVALELEADRLASLQLPANEFDKEIEVIKEERRLRTDDRPSSKAFELFKAMAYPASGYSIPTIGWMADLERMHIDELRAWYRQWYAPNNATLVVVGDVSVDQVKSLAQRYFAAIPRREVPKAKLPLELQAAGERRTTLYLKTQLPNLMMGFNVPSLATTATPRQVYALRLAAALLDGGYSARLSTRLERGEELVSGASAWYNAFTRGDSLFVLTATPNVQKGKTLEQAEAGLWRELEALKKTPPSAAELARVRAQVIAGLVYERDSITSQATSIGQLETVGLSWKLIDQELAELEAVTPADIQQAARTFFVRDRLSVAHVLPEASRNQESRHED
>NZ_CP045349.1|WP_152489813.1|4776775_4778236_+|insulinase-family-protein
MKTEHRRLGLLGLALSTALALGACSVVGKPAATGEGAKLQSLAALDNQAPTRRTLDIQTWNTAQGAKVLFVEAHELPMFDLRLTFAAGSSQDGDVPGLAALTNAMLNEGVPGKDVGAIASGFEGLGADFGNGSYRDMAVASLRSLSAREQREPALALFSQVLGKPTFPADSLARIKNQLLAGFEYQKQNPGKLASLELFEHLYGKHPYAHPSDGTPQSIPAITRQQLQAFHARAYTPGNAVIALVGDLSRSEAEAIARQVSAALPQGPALAAIAQPQTPKPGSSHIEYPSNQTHLMLAQLGIDRRDPDYAALYLGNQIFGGGGFGTRLMSEVREKRGLTYGVYSGFSAMQARGPFMINLQTRAELSEGTLALVKQLLADYLREGPTQQELDNAKRELAGSFPLSTASNADIVGQLASMGFYDLPLSYLDDFMRDVQGLTTEQVKAAMARHLDPAALVVVTAGPTVAQKELPPPTERPSELPSTVPH
>NZ_CP045349.1|WP_152489814.1|4778235_4778841_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRGRTPQKAPGKAHGGQGQLRIIGGEWRSRRFAFPDGPGLRPTPDRVRETLFNWLAPHVEGAHVLDPFAGSGALLLEALSRGAASGLACDLNPASVNALRGHLTTLQCSAGEIQLGDALQLLARPAPRCFDIVLLDPPFHKDLLQAACTLLETQGWLAADAWVYTESETPPSTLGLPGNWRLHREKHTGQVHYALWQRSAQ
>NZ_CP045349.1|WP_152489815.1|4778984_4779965_+|hydrolase
MTPFQPAWWLPGPHLQTLWNPFCRKPPQLQRRRERLWLDDGDFLDLDWHGPHDAHAPLVLVLHGLTGSSDSLYVLGLQQTLAARGWASVALNWRGCSGEPNLLPRGYHSGASEDLAATVAHLRAQRPMAALYAVGYSLGGNVLLKYLGESGAQSQLRGAVAVSVPFRLDQCADRIGLGFSRVYQAHFMREMVAYVNNKQRLFAEQGQGERLSVLERLGPLDGMRTFWDFDGRITAPLHGFADAHDYYRRASSRFYLGAIRTPALLIQAADDPFIFRHSLPEASELAPGTEFELHARGGHVGFVEGCPRKPVYYLERRIPQWLASLE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

33861 : 94721

Streptomyces_phage(16.67%)

holin,plate,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152487468.1\|33861_34788_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_152487469.1\|34992_35559_+	C40 family peptidase	A0A2H4PI41	Streptomyces_phage	5.9e-16	41.0
WP_152487470.1\|35703_36354_+	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	A0A2I7SAW6	Vibrio_phage	6.5e-59	60.7
WP_152487471.1\|36585_38052_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_152487472.1\|38174_39551_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_037052268.1\|39761_40076_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_037052265.1\|40148_41522_-	Trk system potassium transporter TrkA	NA	NA	NA	NA
WP_152487473.1\|41533_42847_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_152487474.1\|42843_43776_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
WP_013713230.1\|43832_44339_-	peptide deformylase	E3SLL2	Synechococcus_phage	1.9e-18	40.7
WP_037052257.1\|44492_45530_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_152487475.1\|45616_46732_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	7.8e-28	38.6
WP_047585274.1\|46979_47537_+	L-threonylcarbamoyladenylate synthase	NA	NA	NA	NA
WP_152487476.1\|47602_48580_-	NADPH:quinone reductase	NA	NA	NA	NA
WP_037052384.1\|48728_49646_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_152487477.1\|49800_50622_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_037052242.1\|50632_50983_+	DOPA 4,5-dioxygenase family protein	NA	NA	NA	NA
WP_152487478.1\|51015_52587_-	STAS domain-containing protein	NA	NA	NA	NA
WP_150607375.1\|52645_53566_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_152487479.1\|53615_55124_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_037052233.1\|55237_56158_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_047585263.1\|56249_57152_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_152487480.1\|57195_58131_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_134676652.1\|58355_59159_+	2,5-didehydrogluconate reductase DkgB	A0A2H4PQR8	Staphylococcus_phage	9.9e-41	37.9
WP_152487481.1\|59238_61446_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_172979118.1\|61581_62529_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_152487483.1\|62620_63364_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_037052208.1\|63596_65039_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	3.9e-88	42.3
WP_152487484.1\|65169_65979_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_037052202.1\|65975_67187_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_152487485.1\|67308_68196_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_152490069.1\|68317_68839_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_152487486.1\|68835_69777_+	FecR domain-containing protein	NA	NA	NA	NA
WP_152487487.1\|69893_72281_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_152487488.1\|72400_72907_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_152487489.1\|72903_73851_+	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_152487490.1\|74618_77051_+	TonB-dependent receptor	NA	NA	NA	NA
WP_037052187.1\|77184_77400_+	dodecin family protein	NA	NA	NA	NA
WP_152487491.1\|77368_78346_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_152487492.1\|78564_79143_+	hypothetical protein	NA	NA	NA	NA
WP_134676663.1\|79149_80379_-	spore maturation protein	NA	NA	NA	NA
WP_037052171.1\|80453_80915_-	hypothetical protein	NA	NA	NA	NA
WP_037052169.1\|80925_81090_-	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_037052167.1\|81109_81307_-	hypothetical protein	NA	NA	NA	NA
WP_021442733.1\|81672_82077_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_037052165.1\|82155_83256_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_037052162.1\|83500_84046_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_037052157.1\|84038_85415_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_152487493.1\|85520_86423_+	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_152487494.1\|86858_88421_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_037052146.1\|88475_88982_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_037052143.1\|89007_90486_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_037052140.1\|90492_90918_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_152487495.1\|90907_91183_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_152487496.1\|91193_91451_+	hypothetical protein	NA	NA	NA	NA
WP_152487497.1\|91450_91960_+	hypothetical protein	NA	NA	NA	NA
WP_037052131.1\|91959_93750_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_037052128.1\|93713_94721_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

2487489 : 2550047

uncultured_Caudovirales_phage(24.0%)

protease,transposase,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037055907.1\|2487489_2487852_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.8e-11	43.2
WP_152488673.1\|2487881_2490152_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.5e-163	42.9
WP_002553999.1\|2490245_2490464_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_152488674.1\|2490602_2491310_-	arginyltransferase	NA	NA	NA	NA
WP_152488675.1\|2491364_2492045_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_037055914.1\|2492099_2493050_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	9.2e-62	43.6
WP_081876519.1\|2493220_2495653_+	DNA translocase FtsK	G1D482	Mycobacterium_virus	8.0e-86	50.0
WP_037055916.1\|2495777_2496404_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_152488676.1\|2496407_2497733_+	AAA family ATPase	G3MBE0	Bacillus_virus	1.8e-76	40.0
WP_037055922.1\|2497729_2498110_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_047589197.1\|2498189_2499470_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	9.7e-99	55.3
WP_152488677.1\|2499578_2500967_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_152487592.1\|2501045_2501993_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_152488678.1\|2502076_2503084_-	glutathione S-transferase C-terminal domain-containing protein	NA	NA	NA	NA
WP_152488679.1\|2503157_2504153_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	4.8e-146	77.7
WP_152488680.1\|2504149_2504485_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.4e-43	77.5
WP_152488681.1\|2504481_2504781_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.7e-28	63.6
WP_152488682.1\|2504780_2505140_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	6.8e-34	63.3
WP_152488683.1\|2505140_2505533_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.1e-50	76.0
WP_037056676.1\|2505654_2506323_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	9.2e-93	81.6
WP_037056669.1\|2506747_2507392_+	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_037056667.1\|2507395_2509219_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_037056661.1\|2509252_2509813_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_152488684.1\|2510718_2511873_+	Fic family protein	A0A1V0E025	Clostridioides_phage	6.2e-12	25.8
WP_152488685.1\|2512017_2513379_+	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	5.9e-70	37.2
WP_037056659.1\|2513418_2514258_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	4.3e-63	45.9
WP_047592934.1\|2514306_2514729_-	VOC family protein	NA	NA	NA	NA
WP_152488686.1\|2514801_2516160_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	1.4e-47	27.4
WP_037056654.1\|2516167_2516791_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_037056652.1\|2516793_2517180_+	VOC family protein	NA	NA	NA	NA
WP_152488687.1\|2517281_2518154_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.7e-62	46.6
WP_156049331.1\|2518212_2518380_-	hypothetical protein	NA	NA	NA	NA
WP_152488688.1\|2518663_2519695_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_152488689.1\|2519858_2520674_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_152488690.1\|2520678_2521593_+	alpha/beta hydrolase fold domain-containing protein	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	1.8e-30	35.1
WP_152488691.1\|2521604_2522705_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	3.9e-40	31.7
WP_152488692.1\|2523392_2524769_-	DUF1329 domain-containing protein	NA	NA	NA	NA
WP_152488693.1\|2524789_2526364_-	DUF1302 family protein	NA	NA	NA	NA
WP_152488694.1\|2526803_2527559_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	2.9e-18	31.5
WP_152488695.1\|2527555_2529229_-	FAD-binding protein	NA	NA	NA	NA
WP_152488696.1\|2529237_2529747_-	flavin reductase	NA	NA	NA	NA
WP_152488697.1\|2530044_2531181_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_152488698.1\|2531327_2531708_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_152488699.1\|2531773_2532247_-	SRPBCC family protein	NA	NA	NA	NA
WP_152488700.1\|2532565_2533390_+	alpha/beta fold hydrolase	A0A2D1G9V4	Mycobacterium_phage	3.2e-10	33.1
WP_152488701.1\|2533386_2534178_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_152488702.1\|2534186_2535095_+	acetaldehyde dehydrogenase (acetylating)	E5EQ71	Micromonas_sp._RCC1109_virus	2.0e-34	35.2
WP_152488703.1\|2535108_2536143_+	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	5.3e-47	35.2
WP_134675851.1\|2536260_2536635_-	hypothetical protein	NA	NA	NA	NA
WP_152488704.1\|2536794_2537466_+	response regulator	NA	NA	NA	NA
WP_172979148.1\|2537462_2538785_+	sensor histidine kinase N-terminal domain-containing protein	NA	NA	NA	NA
WP_081876531.1\|2538863_2539256_+	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_152488705.1\|2539393_2539936_-	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_152488706.1\|2539943_2541950_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.0e-42	30.7
WP_152488707.1\|2542034_2543258_-	hypothetical protein	NA	NA	NA	NA
WP_152488708.1\|2543502_2544282_-	hypothetical protein	NA	NA	NA	NA
WP_152488709.1\|2544321_2546868_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	8.7e-83	30.7
WP_152488710.1\|2546867_2547887_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_152488711.1\|2547850_2549638_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_150609603.1\|2549630_2550047_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_3

3989400 : 3997743

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152489446.1\|3989400_3990324_+	toprim domain-containing protein	A0A1B0VML8	Pseudomonas_phage	1.7e-84	59.9
WP_152490141.1\|3990302_3992069_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	5.8e-94	37.5
WP_152489447.1\|3992219_3992540_+	hypothetical protein	A0A1B0YZV7	Pseudomonas_phage	2.8e-15	41.8
WP_172979176.1\|3992648_3995882_+	tape measure protein	A0A0U3TH20	Pseudomonas_phage	5.6e-42	26.4
WP_152489449.1\|3995885_3996464_+	hypothetical protein	NA	NA	NA	NA
WP_172979177.1\|3996579_3997143_+	DUF4124 domain-containing protein	A0A1B0Z2K9	Pseudomonas_phage	6.9e-49	58.5
WP_152490142.1\|3997515_3997743_+	DUF4224 domain-containing protein	A0A1B0VMB6	Pseudomonas_phage	1.9e-13	58.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045349

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection