CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045354	Labrenzia sp. THAF82 chromosome, complete genome	3 crisprs	WYL,csa3,DEDDh,cas3,casR	7	0	11	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045354_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045354_1

645650-646227

Orphan

Consensus_repeat	Method
GGACGCATTAGGAAACAGCTTTTTCAACTCTTTGAGCC	CRISPRCasFinder

6 spacers

The CRISPR arrays of NZ_CP045354_1

>merge|NZ_CP045354|1|645650-646227|CRISPRCasFinder
GGACGCTTCAGGAAACAGCTCTCGTAGCTTTTCGAACCGCCTCACACCACCGGCCTTAAGCCAACGAGCTTCATTAGAAAGCTCTTCAAGGGACGCATTAGGAAACAGCTTTTTCAACTCTTTGAGCCGCCCGATAGTCGCGTAATCAAGACAATTAAGTACATCAACAAGCTCTTTGAAGGACGCATTAGGAAACAGCTTTTTAAACTCTTTGAGCCACCCCACAGCCGCGTCATTAAACATTTCAACTACAACAACAAGCTCTTTGAAGGACGCATTAGGAAACAGCTTTTTAAACTCTTTGAGCCGCCCCACAGCCGCGTCATTAAACATTTCAACTACAACAACAAGCTCTTTGAAGGACGCATTAGGAAACAGCTTTTTCAACTCTTTGAGCCGCCCCATGCCTTCACCATCCAGCTTGCAAGCCGCCTTAGAAAGACTTTTAGGGGATCCATTTTCAAACAGCTGTTTCAGCTCTTTAAGCCGCCTCATGCTCTCGGCATCAAGTGTATGAGCCAGTTTATAACATCTTCTCATGGACGCACCAGGAAACAGCAATAGCAACTCACACATCA

>NZ_CP045354|1|1|645650-646227|CRISPRCasFinder
GGACGCTTCAGGAAACAGCTCTCGTAGCTTTTCGAACC	GCCTCACACCACCGGCCTTAAGCCAACGAGCTTCATTAGAAAGCTCTTCAAG
GGACGCATTAGGAAACAGCTTTTTCAACTCTTTGAGCC	GCCCGATAGTCGCGTAATCAAGACAATTAAGTACATCAACAAGCTCTTTGAA
GGACGCATTAGGAAACAGCTTTTTAAACTCTTTGAGCC	ACCCCACAGCCGCGTCATTAAACATTTCAACTACAACAACAAGCTCTTTGAA
GGACGCATTAGGAAACAGCTTTTTAAACTCTTTGAGCC	GCCCCACAGCCGCGTCATTAAACATTTCAACTACAACAACAAGCTCTTTGAA
GGACGCATTAGGAAACAGCTTTTTCAACTCTTTGAGCC	GCCCCATGCCTTCACCATCCAGCTTGCAAGCCGCCTTAGAAAGACTTTTAGG
GGATCCATTTTCAAACAGCTGTTTCAGCTCTTTAAGCC	GCCTCATGCTCTCGGCATCAAGTGTATGAGCCAGTTTATAACATCTTCTCAT
GGACGCACCAGGAAACAGCAATAGCAACTCACACATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045354.1\|WP_173005854.1\|626943_634011_-\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
NZ_CP045354.1\|WP_152499431.1\|638471_639755_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238090
NZ_CP045354.1\|WP_152499433.1\|640171_641259_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP045354.1\|WP_173006216.1\|653366_654794_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|237522
NZ_CP045354.1\|WP_173005858.1\|654726_655527_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP045354.1\|WP_152504090.1\|625242_625413_-\|MbtH-family-NRPS-accessory-protein	unknown	unknown	gnl\|CDD\|377081
NZ_CP045354.1\|WP_152499434.1\|643200_643752_+\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|225580
NZ_CP045354.1\|WP_173005856.1\|651288_651426_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152504089.1\|650673_650901_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499435.1\|644437_644929_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP045354.1\|WP_152499443.1\|656934_657156_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499439.1\|651490_651706_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_173005855.1\|645344_645542_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499430.1\|636452_637031_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499440.1\|651740_652286_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225095
NZ_CP045354.1\|WP_173005857.1\|652316_653087_+\|BID-domain-containing-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499438.1\|650195_650666_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225095
NZ_CP045354.1\|WP_152499432.1\|639901_640141_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499437.1\|647717_648023_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499429.1\|635058_636146_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671

Protein	Function_ID	Function_description	E-value
NZ_CP045354.1\|WP_152499435.1\|644437_644929_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.73504e-15
NZ_CP045354.1\|WP_152499431.1\|638471_639755_-\|hypothetical-protein	gnl\|CDD\|238090	cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.	1.31471e-06
NZ_CP045354.1\|WP_152499433.1\|640171_641259_-\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.93358e-25
NZ_CP045354.1\|WP_173005858.1\|654726_655527_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	1.07893e-11
NZ_CP045354.1\|WP_152499440.1\|651740_652286_+\|Fic-family-protein	gnl\|CDD\|225095	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning].	1.05016e-22
NZ_CP045354.1\|WP_173006216.1\|653366_654794_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|237522	PRK13822, PRK13822, conjugal transfer coupling protein TraG; Provisional.	0
NZ_CP045354.1\|WP_173005854.1\|626943_634011_-\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP045354.1\|WP_152499438.1\|650195_650666_-\|Fic-family-protein	gnl\|CDD\|225095	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning].	2.02061e-24
NZ_CP045354.1\|WP_152504090.1\|625242_625413_-\|MbtH-family-NRPS-accessory-protein	gnl\|CDD\|377081	pfam03621, MbtH, MbtH-like protein. This domain is found in the MbtH protein as well as at the N-terminus of the antibiotic synthesis protein NIKP1. MbtH and its homologs were first noted in gene clusters involved in non-ribosomal peptides and other secondary metabolites by Quadri et al. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. The structure of the PA2412 protein shows it adopts a beta-beta-beta-alpha-alpha topology with the short C-terminal helix forming the tip of an overall arrowhead shape. MbtH proteins have been shown to be required for the synthesis of antibiotics, siderophores and glycopeptidolipids.	7.8828e-19
NZ_CP045354.1\|WP_152499434.1\|643200_643752_+\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	1.20077e-30
NZ_CP045354.1\|WP_152499429.1\|635058_636146_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	5.09692e-22

>NZ_CP045354.1|WP_173005855.1|645344_645542_-|hypothetical-protein
MNPSISSGNDLVRIGLPDDWLGLVGVVLSDEAFDGFLAINDGMKDAVFELPPAQFGEEAFDGIEP
>NZ_CP045354.1|WP_152499435.1|644437_644929_-|GNAT-family-N-acetyltransferase
MQEISFKSNFSVRSYKATDIFRVADLIAELQVFHDLSVQDREDILWDLNNIPASFEVWVVCDANDIPVGLAMCASIPGPGIKAGLFLKEIFVSSSYRNHGLGKMLIRKVVASARDRGMLRIDWLASADNKKAHDFYKQIGAKDCDSVVFFRIDSPILDNFPDL
>NZ_CP045354.1|WP_152499434.1|643200_643752_+|cytochrome-b/b6-domain-containing-protein
MALLNSDSGYGTLTKFLHWSIVILFAMQYIGGHIMTTIGFNSSFAGIVTNDYYDWHKSLGLLALLFAVVRIINRQMGNLPPWAATLSDTEKKFIHRVEQVFYFAMFVMPVSGWLYVMWGNYGVNLFGAWEMPRPLPKDNGLRDIAKWAHIGAGWCLLVAILGHVGLVLRHQIFKKDGLLNRML
>NZ_CP045354.1|WP_152499433.1|640171_641259_-|IS3-family-transposase
MKKSRITESQILAVLKQGESGVPVADLCREHGISNATYYNWRSKYGGMDASLMSEMKAMAEENRRLKKMYAEMAMQNELLKDAPGKKALRPSQRREMAMNAIRLRGVSIALACRTFQISESCYRYERKLGDENAEIADWLVRLTTTHRTWGFGLCFLYLRNVKGFAWNHKRVRRIYRALELNLRIKPKKRLVREKPEPLVVPNEANVTWSMDFMSDQLADGRSFRTLNVLDDFNREGLGIEVDISIQALRVIRTLERIIEWRGKPLNIRVDNGPENVSAALQMWASRRGIGLQYIQPGKPQQNAYIERYNRTVRHEWLGQYIFNTIKEAQDHATRWLWTYNNERPNMAIGGVTPKMKLTAAA
>NZ_CP045354.1|WP_152499432.1|639901_640141_-|hypothetical-protein
MITKPPGKALFEVLAPPYGLKPSDLGEEFEDRGERFRIIVLEPRRPKYPVNVERLSNRKKYKFSADSIAILLAKAQQRK
>NZ_CP045354.1|WP_152499431.1|638471_639755_-|hypothetical-protein
MPISFENFGNIVLANRERVENPKKNTVRLNAAGDLYIDKVRSTKSFLGRAVSWIRSLSSSTRNSENKTVRMRFRSFLADIYGPDVGAQIYNKTCYSRFSLRWRPLTVQKIQNAVYSNSMQLQKNIDVTKALTAMQQIAASFEKEGTGNRLEEVGVFRVPGLTDNMNILEHMIGGDRYQVNWDVLKATDMSNLYLRFGKDHTSKSVRNYMAKKSAEYETWISENGKPEEFFHFGKFGAFESLPPQLQLHLKVMKSVVSHTDKNLMGHNMGRMFNPTLFGPYCIANAAERETFISELVKHYIGNPTVAADMDALDVNNIPIGRDEVTTNGDLTSERGGLSRNSLSESRDSSVHSRATVDIQRLRQIVAVNPNTHLYGGQSSRSDFEINQDQDLAELKELVDNWDPKDDHHDVAVLDALVALNTPNKTND
>NZ_CP045354.1|WP_152499430.1|636452_637031_+|hypothetical-protein
MTDNSIQTNQSVHNLQPQNQHGLAVPQTRKNSILKIISFFKEKGSSIILGLKTFAGRRVFFFNRHSRRIDPRAESRAPEFRQANGTVQRNARTDSTAQGSVSNLPEATFYFTLLEDIPRERRINLNLNRFCELERNRTKEKNYKIKHENVYYADRAGSEHGADDNAIVMFNDTPVASVVENQVPMAVKANEC
>NZ_CP045354.1|WP_152499429.1|635058_636146_+|IS3-family-transposase
MKKSRFTESQILAVLKQGESGVPVADLCREHGISNATYYNWRSKYGGMDASLMSEMKAMAEENRRLKKMYAEMAMQNELLKDAPGKKALRPSQRREMAMNAIRLRGVSIALACRTFQISESCYRYERKLGDENAEIADWLVRLTTTHRTWGFGLCFLYLRNVKGFAWNHKRVRRIYRALELNLRINPKKRLVREKPEPLVVPNEANVTWSMDFMSDQLADGRSFRTLNVLDDFNREGLGIEVDVSIPALRVIRTLERIIEWRGRPLNIRVDNGPENVSAALQIWASRRSIGLEYIQPGKPQQNAYIERYNRTVRHEWLGQYIFNTIKEAQDHATRWLWTYNNERPNMAIGGVTPKMKLTAAA
>NZ_CP045354.1|WP_173005854.1|626943_634011_-|amino-acid-adenylation-domain-containing-protein
MTNTRIPLSRAQAGVYFQHLRDATGRTFNIGQVTRIETPFDVEQFCAAARWVISRTPALNMAIRVDDKGLYQTLIDRRDTPIAWHDLRDCIDCEQRRVDIIEALLAKPFDLANDPLFRWTLIQSDDRYVDWVQVGHHVVVDGYAGRMLAKHVAQAYSRGDTECDANISLADYRTYLAIEEAYETSTSFKNDRHYWLDLLDGVEIVAPFEAAGVQRGQSHFVRSHLVLEGLRLQSLNATSEILSSNPYQIVTAAMVLMEAMQSRQDDVVIAMPLVGRLGAGSRSMVSNASNVGHLRIRDVWSKDIETLLGEIARQQRAALRHQRYRLEDVRRDLFSDRPGAIFSRASINLMPFDYDLRYGASLSTTHNLCNGPVDGIALSIYRETNGALHLDLDGHANAFDRAQLCHYGDQLLHFVEVLSASSASDLPLASLDLLPPSHRHPLVEFNAPDHSIDDGLVPDLFERVARDAPDAIAVICGDERLDYAGLDAASNQLARYLIGLGAGPETVVGICMDRSITMVVAILSVMKSGAAYLPLDPNHPAERLCEMLVDSAALGVLCNTELKSVLGSATRTIIVDAQETAAAISAQSSAPLTNADRLSSLKSDNLAYLIYTSGSTGKPKPVGNTFRNIARLMQETNHWYHFGSNDCWALFHSIAFDFSVWEIWGALLYGGSLVVVSEEDRRSPDRFVELLHREGVTILNQTPSSFYQLTEVLGTHQQCTELSLRCIIFGGEALEPSRLAPWYSLGQSAQLVNMYGITETTVHVTYQPFDAQSISTINDSRIGVVIPDLGVHILDSHLRRVPVGVWGEMYISGAGLARGYVGRSDLTAERFVACPFGVSGERMYRTGDLGRWRADGTIEFGGRADDQVKLRGFRIEPGEIAAVLGAEKGVGQAAVVLREIAGEARLVAYVTAARDGELPGVDDLRKTLSARLPDYMIPSAFVVLEALPLTASGKLDRKALPSPQIVGSGVHEAPSTAHEALLCRLYAELTGAHQVGVQDGFFALGGHSLLAMRLVSQIREETGLEIGLRAVFSHPTVAGLASELDKAERSSLRPVERGSGRDAEGRMTLSFGQERLWALDRLDGGSSQYNIPLMVELDGALDVCALAAAIRALVMRHEPLRTVISVEAGVPVGRLLDEVEIAPLVEVHDLSISPEALQSHLDAVAGHVFDLAGGPSLYGRLLRLGADRHVLALVVHHGAADGRSLAVLFEELSALYCGEGLTDLAWTYSDHAHWQREWLVESGTLERGLSYWRAHLSGAPEVLDLPLDHTRQGDRARHAGYVPVRIDSVLGEQLSSLAGEAGVTLYSVLLGVWGLLLGRLSRQDEVVIGTPVAGRTAPGSEALIGFFVNTMALRLDLSGMPDRDELLSRVHGVVSDGLEHGDTPFEQVVDALDVARSLSQAPVFQAMFAWQSQETAALSLERMTARSLDMGLAQAKFDVTLSLAPQADGSISGALEYDADLFDVETVSGWTVMFERLVLELVKTKEKHPVALLELVGEADLAPLVEFNAPDHSIDDGLVPDLFERVARDAPDAIAVICGDERLDYAGLDAASNQLARYLIGLGAGPETVVGICMDRSITMVVAILSVMKSGAAYLPLDPNHPAERLCEMLVDSAALGVLCNTELKSVLGSATRTIIVDAQETAAAISAQSSAPLTNADRLSSLKSDNLAYLIYTSGSTGKPKPVGNSHGGLAATFVGLERAGVDFAKNDNVLALTTLSFDISVVELIYPIVSGACVTVVSTEQSKDLNSIPDLIAKHGVTVAQATPSMWRTISSNTPKLRLVLCGGEAIDADLANSLRSVGAAVNLYGPTETTIWSTSCHLYDDRIDIGSPLANEQIHILDSHLRRVPVGVWGEMYISGAGLARGYVGRSDLTAERFVACPFGVSGERMYRTGDLGRWRADGTIEFGGRADDQVKLRGFRIEPGEIAAVLGAEKGVGQAAVVLREIAGEARLVAYVTAARDGELPGVDDLRKTLSARLPDYMIPSAFVVLEALPLTASGKLDRKALPSPQIVGSGVHEAPSTAHEALLCRLYAELTGAHQVGVQDGFFALGGHSLLAMRLVSQIREETGLEIGLRAVFSHPTVAGLASELDKAEKGQLPYHPIVPLKQGGDHTPLFCVHPASGIATVYRKLAMTLTCDCPVYGLQARGLESSREKPFETIEQMAACYLAAMRLIQPVGPYRLIGWSFGGRVALEIAQLIETAGEEIEQIILLDSPVAETNHRVAAVTNEDMLKEVARDLGIVIADVALENQRERLFNALIERGDIAQTANVDILDRVVVCLTNSIKMLEAHRLQRLVSPVVYIKASDNKTADLKEKLTEITAGPTTLVPVEATHGQICSNKFSVRIADILNATLR
>NZ_CP045354.1|WP_152504090.1|625242_625413_-|MbtH-family-NRPS-accessory-protein
MVLVNDEEQYSLWPSAQPIPEGWRQVGPIGAKQECLKWINRNWPDIAPLSIRSSQT
>NZ_CP045354.1|WP_152499437.1|647717_648023_-|hypothetical-protein
MVNNLAIAKIGYVDMMGLSFFICGAKQPAPANKSSSLAATNKSKSTFWGKFVFFKRGRKTGKPIEICDHPFERILKAEADPKKVNEFWSKEQLSEYLKTLN
>NZ_CP045354.1|WP_152499438.1|650195_650666_-|Fic-family-protein
MTFDPFGDFAVRGYLRNHAAQKDPAKIKDLEHDSFRANVGRALKYLSQSDMLTFDDVKAVHKTLFEDVYPWAGQDRSQNALEIHVTKGNVEFMFANHVGRGVEYALQQGNDVSSMRVRPGEVMGHLAYAHPFLDGNGRTIMTVHSELCRRAGFHID
>NZ_CP045354.1|WP_152504089.1|650673_650901_-|hypothetical-protein
MRLLSAEEQIRVLAKKHDISVARTALDDWADDVTRLAGDDVRFDEVQELVVALRRARVVDGVELTRLHSRYLDER
>NZ_CP045354.1|WP_173005856.1|651288_651426_+|hypothetical-protein
MKISRDEPDLFTQFLIVCKETGFLTDQECDALDDEYVEAKRRHAA
>NZ_CP045354.1|WP_152499439.1|651490_651706_+|hypothetical-protein
MQRISRSASDRPEDVAWRVEQGEVEGAIEGIETSPELEEFVTTMDAEGVSPEEQIERIILFAKTRHLQAAE
>NZ_CP045354.1|WP_152499440.1|651740_652286_+|Fic-family-protein
MSQLRDKAEREIYERIMYPGDEPRVPVNKLGLRTWKELEEVKNKIATRRLKVGIPDRARQLTYDGLKSLHHHLFQYAYSWAGQERAYTTGRNAGVPIATPENIRSYLEAEFKKFEAANQFKGLAPGQFAEKAAHLLNEINAAHPFIESNGRVQRVFLRLISENAGYEISLKASDKELWNEA
>NZ_CP045354.1|WP_173005857.1|652316_653087_+|BID-domain-containing-protein
MAELIEARMSPLRSLEHAKTASMDVLAPSATLSPEVSRAELQDRLAASKAVQTSTAKLEKQVGIVFSNPKPVLAAIREVAETGKLDDLSIVGELSQISGLAGKSGVLVARQDRLSRQNAIEGQRGLHSLVGTHINVVHGIRKTMAQERQAVVDKARVEVSAPSQSLTQAIQEAGPLSEAHKSELRHVMARLEKRFGSDLGEMRAGVKPKRFEELSRKHGLDPKQMERLESTLKVLDKGQTRVRQQARKLDQTKAAE
>NZ_CP045354.1|WP_173006216.1|653366_654794_-|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MRKALANARSENWKLPDWEWGVTLKLKPFRLDCRPNGPTVRVATGPGGKAPLIAFDQGFGSTHGIVFAGSGGYKTTSVVIPTCLTYPGSMVVLDPSTEIAPMVSQSRHSLDQDIYCLDPKHPEIGFNVLDWIGQFGASIEEDIATVAAWLMSEKPRLASGADDFFRTSAEQLITSVIAHVVFSNSKNSSRQRSLRAVRSILTKPEENLKEFLADIHDTAPNEFVKELVGPFIDMTPQTFSGVYATAAKETHWLSYENYAALVSGNTFKTDIIANGHTTVFLNIDLSTLENHPGMARVIIGAFLKAVYNRDGDIKGRVLFMLDEAARLGYMRIIETARDAGRKYRISLLMLFQSLGQMREAFGGRDATSKWFESASWVSFAAINDTDTARYICERCGMTTVEVEQVSRSSRAGSLTRNRSRQLSQRPLIQPHEILQMRSDEQIIFTSGNRPLRCGRAIFFRRRDMSGKVRNSRFKE
>NZ_CP045354.1|WP_173005858.1|654726_655527_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MTPHSQSGSFQFSLRAFANALRRGRSEQPAAGGVTAAASQAAVNPERFAVFDQFSSSGTMSYTAAAPQPADTLAILSGNNGTATHDARQEGGARSGWDFWAQGTYAVTRNSDSDSQTGLFFAGLDYRYEDRAVFGVMGQLDVTDESNDSANTSADGVGWMAGPYLVLRAHQNLYLNGIMTYGRSYNSVNALGLFEDDFRTQRFLLQGGLTGDFRLNETTRISPFTRITYYYEEQQSYTDTLGRTIPSQDFDLGRLEFGPKVSFDRA
>NZ_CP045354.1|WP_152499443.1|656934_657156_+|hypothetical-protein
MSQAIMAWAAFKNMARAAGRDPEWAIVAIVLAPIRAAQSARSLERRGTPAQNLRFAIFRVSFCYRLLSTVIVC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP045354_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045354_2

760651-760775

Orphan

Consensus_repeat	Method
GCATTAGGAAACAGCTTTTTCAACTCTTTGAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045354_2

>merge|NZ_CP045354|2|760651-760775|CRISPRCasFinder
GCATCAGGAAACAGCTCTCGTAGCTTTATGAGCCGCCCCATACCATCGGCATCAAGTTGACGGGTCGCGCCGCGACATTCTCTGAAGGTCGCATAGGAAAACAACCCTTTCAGCTCTTTCATCCG

>NZ_CP045354|2|2|760651-760775|CRISPRCasFinder
GCATCAGGAAACAGCTCTCGTAGCTTTATGAGCC	GCCCCATACCATCGGCATCAAGTTGACGGGTCGCGCCGCGACATTCTCTGAAGGTC
GCATAGGAAAACAACCCTTTCAGCTCTTTCATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045354.1\|WP_152499522.1\|767144_767393_-\|DUF2188-domain-containing-protein	unknown	unknown	gnl\|CDD\|378323
NZ_CP045354.1\|WP_152499525.1\|771365_771929_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP045354.1\|WP_152499514.1\|751597_751858_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|274227
NZ_CP045354.1\|WP_173005872.1\|757306_757468_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499395.1\|758202_758631_+\|MucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227293
NZ_CP045354.1\|WP_152499521.1\|765406_765895_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP045354.1\|WP_152499523.1\|767395_769669_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173793
NZ_CP045354.1\|WP_152499519.1\|763351_764884_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP045354.1\|WP_173005855.1\|760313_760511_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499469.1\|762528_762897_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237522
NZ_CP045354.1\|WP_152499516.1\|752171_752567_-\|antirestriction-protein-ArdA	unknown	unknown	gnl\|CDD\|377800
NZ_CP045354.1\|WP_152504098.1\|755454_757089_+\|ATP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274289
NZ_CP045354.1\|WP_152499526.1\|772164_772635_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341100
NZ_CP045354.1\|WP_152499433.1\|765929_767017_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP045354.1\|WP_152504088.1\|757634_757889_+\|WGR-domain-containing-protein	unknown	unknown	gnl\|CDD\|153425
NZ_CP045354.1\|WP_152499515.1\|751847_752147_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP045354.1\|WP_152499520.1\|765104_765398_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP045354.1\|WP_152499524.1\|769661_770786_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223540
NZ_CP045354.1\|WP_152499513.1\|751235_751544_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499517.1\|752916_754149_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773

Protein	Function_ID	Function_description	E-value
NZ_CP045354.1\|WP_152499522.1\|767144_767393_-\|DUF2188-domain-containing-protein	gnl\|CDD\|378323	pfam09954, DUF2188, Uncharacterized protein conserved in bacteria (DUF2188). This domain, found in various hypothetical bacterial proteins, has no known function.	4.1326e-11
NZ_CP045354.1\|WP_152499525.1\|771365_771929_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	2.75286e-48
NZ_CP045354.1\|WP_152499514.1\|751597_751858_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|274227	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15. [Cellular processes, Other, Mobile and extrachromosomal element functions, Plasmid functions].	2.65318e-16
NZ_CP045354.1\|WP_152499523.1\|767395_769669_-\|S8-family-serine-peptidase	gnl\|CDD\|173793	cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	3.87578e-39
NZ_CP045354.1\|WP_152499517.1\|752916_754149_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	2.75219e-25
NZ_CP045354.1\|WP_152499521.1\|765406_765895_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.80184e-18
NZ_CP045354.1\|WP_152499519.1\|763351_764884_+\|hypothetical-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	8.77371e-23
NZ_CP045354.1\|WP_152499395.1\|758202_758631_+\|MucR-family-transcriptional-regulator	gnl\|CDD\|227293	COG4957, COG4957, Predicted transcriptional regulator [Transcription].	2.53459e-63
NZ_CP045354.1\|WP_152499469.1\|762528_762897_-\|hypothetical-protein	gnl\|CDD\|237522	PRK13822, PRK13822, conjugal transfer coupling protein TraG; Provisional.	0.00923236
NZ_CP045354.1\|WP_152499516.1\|752171_752567_-\|antirestriction-protein-ArdA	gnl\|CDD\|377800	pfam07275, ArdA, Antirestriction protein (ArdA). This family consists of several bacterial antirestriction (ArdA) proteins. ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification.	0.0019658
NZ_CP045354.1\|WP_152504098.1\|755454_757089_+\|ATP-binding-domain-containing-protein	gnl\|CDD\|274289	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.	2.89427e-58
NZ_CP045354.1\|WP_152499526.1\|772164_772635_-\|hypothetical-protein	gnl\|CDD\|341100	cd16364, T3SC_I_like, class I type III secretion system (T3SS) chaperones and similar proteins. This family contains class I type III secretion system (T3SS) chaperones mainly found in Gram-negative bacteria such as Pseudomonas, Yersinia, Salmonella, Escherichia and Erwinia, among others. A wide variety of these bacterial pathogens and symbionts require a T3SS to inject eukaryotic host cells with effector proteins important for suppressing host defenses and establishing infection. Many of these effector proteins interact with specific type III secretion chaperones prior to secretion. These T3SS chaperones have been classified as class I type III secretion chaperones (T3SC), which are small structurally conserved dimers that interact specifically with T3SS effector proteins. Class I T3SC consists of two subclasses: IA and IB. Class IA T3SC binds a single effector, whereas class IB T3SC binds to several effectors. Class IA and Class IB T3SCs typically exhibit little sequence similarities, but share a common overall heart-shaped structure fold (alpha-beta-beta-beta-alpha-beta-beta-alpha) and features, such as a small size, an acidic pI and an amphipathic C-terminal alpha-helix. Chaperone protein CesT serves a chaperone function for the enteropathogenic Escherichia coli (EPEC) translocated intimin receptor (Tir) protein, which confers upon EPEC the ability to alter host cell morphology following intimate bacterial attachment. In Pseudomonas aeruginosa, chaperone ExsC binds small secreted protein ExsE as well as the non-secreted anti-activator protein ExsD; it relieves repression of the transcriptional activator ExsA (which activates expression of T3SS genes) by ExsD. P. aeruginosa SpcU binds the cytotoxin ExoU, which is a broad-specificity phospholipase A2 (PLA2) and lysophospholipase, and maintains the N-terminus of ExoU in an unfolded state which is required for secretion. Salmonella enterica chaperone SicP forms a complex with effector protein SptP at an early stage of its secretion process in order to avoid premature degradation, while chaperone SigE binds to effector SigD, which, upon translocation into the host cell, preferentially dephosphorylates specific inositol phospholipids that are thought to be crucial for subsequent activation of the host cell Ser-Thr kinase Akt. This family also includes Yersinia chaperone/escortee pairs SycE/YopE, SycH/YopH, SycT/YopT and SycN+YscB/YopN, all of which bind to specific Yersinia outer proteins (Yops). Also included are several DspF and related sequences from several plant pathogenic bacteria. The "disease-specific" (dsp) region next to the hrp gene cluster of Erwinia amylovora is required for pathogenicity but not for elicitation of the hypersensitive reaction. In addition, a group of proteins including Escherichia coli YbjN, Erwinia amylovora AmyR, and their homologs, are included in this family. They share a class I T3SC-like fold with T3SS chaperone proteins but appear to function independently of the T3SS.	2.87336e-09
NZ_CP045354.1\|WP_152499433.1\|765929_767017_-\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.93358e-25
NZ_CP045354.1\|WP_152504088.1\|757634_757889_+\|WGR-domain-containing-protein	gnl\|CDD\|153425	cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.	1.86544e-26
NZ_CP045354.1\|WP_152499515.1\|751847_752147_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.10933e-17
NZ_CP045354.1\|WP_152499520.1\|765104_765398_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	1.16228e-06
NZ_CP045354.1\|WP_152499524.1\|769661_770786_-\|AAA-family-ATPase	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	1.41681e-39

>NZ_CP045354.1|WP_173005855.1|760313_760511_-|hypothetical-protein
MNPSISSGNDLVRIGLPDDWLGLVGVVLSDEAFDGFLAINDGMKDAVFELPPAQFGEEAFDGIEP
>NZ_CP045354.1|WP_152499395.1|758202_758631_+|MucR-family-transcriptional-regulator
MNDINAETSLIDCTADIVAAYVSNNTVNTSDLTGLISSVHEALRKNSDGTLDEAPQEPAVPINKSVHSDYIICLEDGKRFKSLKRHLKAYYGMTPEDYRAKWDLKESYPMVAPNYAALRAELAKKSGLGTKYGRSKGAKTRT
>NZ_CP045354.1|WP_152504088.1|757634_757889_+|WGR-domain-containing-protein
MLQTYLEKLDPPNNAARFYRMAVLPNLFGEWTLYREWGRIGQGGQVRLDCYEHESQAVAALMALEASKRARGYWAEPQQRTMFD
>NZ_CP045354.1|WP_173005872.1|757306_757468_+|hypothetical-protein
MTALSTPRLQAWKVLSYACPLERLGWPPGLFAPQIVDRICIFIAARVQILFMI
>NZ_CP045354.1|WP_152504098.1|755454_757089_+|ATP-binding-domain-containing-protein
MDGNPQASRVVLAHRRADVKALNEAIRSTLQEWGALTKGAEAGEVVAETNDGTRSFASGDRIVFLENNRELGVKNGMLGTVERIETSGDNLAPRLVARLDGENGRSVQVDLDTYKAIDHGYATTIHKSQGATVDRAFVLASSTMDRHLTYVAMTRHRKDVQLYADASAFAGRSASHASGQSSGHTSGRLVAHGAAPFEHKQGNAKSYFVTLETAQGAQHTTWGVDLERALGEARPKIGDMIGLRREGSQSVRLPDGRTVERNAWAVQSGEELAYDKLAEQLSRSGAKETTLDYTAAFAERRGIASTLGINSEIEVKGLEGGLAARHDNAPEKRVFSMDNGSIDEHSGGPVKENDQESEASPDRDRPAAHYGAMGERVRSQADPFETFGRVERPDGKAGPAPQSNGAQKTPQPPVKQLPFNDSLVDRQLEKISHHEDPDVALSALARRATLHKKAQSGREREMMVSLFKKAREHPDAWKLLADRLAQNAETQPLANAVNKALAPKPDLEKENHKQKETGQKRGMENKARSQTTARNRGKDRGMSR
>NZ_CP045354.1|WP_152499517.1|752916_754149_-|IS110-family-transposase
MTDASIAQTEPVLVAIDIAKSRHEVLLSIPGRKRRRRLTVLNQLDDFNRLIALLRDYGRPVRVAFEATGNYHRALAYRLGSAGFEVKLVSSVSLARTREALNNSWDKNDPKDAQVILHMMQIGNEQFYHDPVLCGTNDLQELSKTHDIVSRSKTELWHRVLTHYLPLYFPEAERFHRSSRSDWFFAFLERYPSPHFISAMSQEAFIADAWEVVGRKVSKERLLADIYETAKTSVGLPIAPDSDAAKMFRMVLAEGRSLIAQRNQIEGLAEALLKENADYTLLTSIPGIGAINALTILAEAGDLRRFQHHRQFLKFCGMDLATIQSGTFRGQTKLSKYGNARLRRTLWMAGQVAINQRTNSFRDKFERYIAKDRQNTHLRRKAYTAIAAKMARTIHGIIKRGEPYRPFFEG
>NZ_CP045354.1|WP_152499516.1|752171_752567_-|antirestriction-protein-ArdA
MVEEFEFSYHGDSDLDFYLFSALGIGQSTILPFIEKVDEWSEDAKYCLIVAVGECGMAFDIEADDPYDLDVDFYHDMNLIELARVFVDEGLFGNIPSNLEYYIDYDAMAADLAHDYTEILIDGVVCVYRCA
>NZ_CP045354.1|WP_152499515.1|751847_752147_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAYRLTRKAAEDIQNIFGEGTLMFGEAQAIKYHGKLEACFELLAGNPHISRAREEINPPVHIHPIGSHIIVYSVDEQRDILIIRVRHGREDWQDNPIEP
>NZ_CP045354.1|WP_152499514.1|751597_751858_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MATMNVSLPDPMKDWVEAQAATGRYANASDYVRDLIRRDQERADKIAQMQKLVSEGLDSGISDQSMADILQSARARMKSASTDDGL
>NZ_CP045354.1|WP_152499513.1|751235_751544_+|hypothetical-protein
MDQYEFEKYLENQPKISGTEPVGRFVKNAFGVEEKLVLPDAYWRYVDWLVEAEAVEIERYIVDCDNERGERTLSENLMDWLYFDMTERKKAFHPLPSWLEFI
>NZ_CP045354.1|WP_152499469.1|762528_762897_-|hypothetical-protein
MFWKSDDIITLYWVWFQPHLAAMPDGNVVQHLRYLNQVFGLLTEADVQFLVLGCANGLAGIAALAAIARTSLNPDSRKQSKSDLFGDARWMRRRIMAKLSRKGVYIIKPFGLWHDYTREMNA
>NZ_CP045354.1|WP_152499519.1|763351_764884_+|hypothetical-protein
MKSNYFEINASYPTEQSTVATQYPTAEMTYLSDDAANYSRATHTDMPTNFASNAISDYSASFGTMLDNGTVLVSSGQFDVTWSAGSTAEPLVLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFSIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDQMYGGAGSDTFVFKPGFGSDRISDFDMDADRLDFSSMIDANGVYMLTATKQSDQGLELAFSDGSSLMLDSVSATKIGDPNMMFLDDLTF
>NZ_CP045354.1|WP_152499520.1|765104_765398_+|transposase
MSKRKRHAPEFKAKVALEALKGEETVSELASRFGVHPTMIHQWKRALLEGASDVFARGGKRKPEIDEDQVKELHAKIGELAVANDFLSRKLKPWGMK
>NZ_CP045354.1|WP_152499521.1|765406_765895_+|IS3-family-transposase
MIEPRHPDLSVGKQCSLLSISRSSFYYTPKGESEMNLALMRQIDEQFLEAPFFGVRQMTWHLKNEGHPVNEKRVRRLMRLMGLMPIYQKPNTSRPAKGHKIWPYLLKGLRVERPNQVWASDITYLPMRRGFLYLVAIMDWFTRKVLAWRISNTLEADFCVEG
>NZ_CP045354.1|WP_152499433.1|765929_767017_-|IS3-family-transposase
MKKSRITESQILAVLKQGESGVPVADLCREHGISNATYYNWRSKYGGMDASLMSEMKAMAEENRRLKKMYAEMAMQNELLKDAPGKKALRPSQRREMAMNAIRLRGVSIALACRTFQISESCYRYERKLGDENAEIADWLVRLTTTHRTWGFGLCFLYLRNVKGFAWNHKRVRRIYRALELNLRIKPKKRLVREKPEPLVVPNEANVTWSMDFMSDQLADGRSFRTLNVLDDFNREGLGIEVDISIQALRVIRTLERIIEWRGKPLNIRVDNGPENVSAALQMWASRRGIGLQYIQPGKPQQNAYIERYNRTVRHEWLGQYIFNTIKEAQDHATRWLWTYNNERPNMAIGGVTPKMKLTAAA
>NZ_CP045354.1|WP_152499522.1|767144_767393_-|DUF2188-domain-containing-protein
MSKDKDRTIYRRPSDNKWVDKRNDAGRGFVFDTQAAAIASGREKLVNAGGGELTVKGRDGKIRSKDTLGGGNDPMPPRDREH
>NZ_CP045354.1|WP_152499523.1|767395_769669_-|S8-family-serine-peptidase
MADPPRQPLLNPVLRFTKDPKPEGVSGGGKNAASIMTGRLPKQRRVLSRQFRDLGTQATQQPRFDGRVVLYASMFDDSLAPSYTPNDLFQATRSARLIAPYRSGYLVEIAADQLDRYAGIVESSGLTKDQVDISRIEAVRFFESADAGGAASLDEIWESAPVTDAGKAFVVWLMPLRGRDAAEELIQRFSVLRDGTIVPPPPLLAGIDVGTDTDVPVGMRRALKTLAASGDRFNLAMRTYRLHHRARTTVLVPSRTALDQLIASGTVFRIEPVQSISSTSPGEGREPDRPLPRDMTTLPIVGVVDGGLTAASYRHAEAWRAPPLIADGAADTQHGNWVTSLVVQGHDWNNNLNLPPLYCQVGTVQAVAKKGSRAFVDPQDFVAYLDSVMASNPETRVWNLSLNQPYSCDLEAVSALGHDIAMLARKHSVLPIISIGNKPGMRLQPPGDCEAAITVGGRVHDNNGDPAGKCPVSLCGPGPSSMQKPDLSHFSHVRALGGVVIRGSSFATSLTSPLAAHTMERLREASPDLVKALLLHNSDGVTFDPALGFGTPTTASLPWECRPGFVTLQWRASLRPSAAYYWELPIPESLKRTGKLKGTGALTAILNPLPMVTDYAGPNYFSVRLATALQYQRGKTPKNAAKFHNLLGSLDTGKITEQEARSFDHKWSPIRHHKNDFQGVSFESDMLRIYARIYARDLYLYGYSSADEIPEMETIFVLSLGTGDENDDVYNELRDQLGAFVETAVVEADIDVDNEGF
>NZ_CP045354.1|WP_152499524.1|769661_770786_-|AAA-family-ATPase
MEVDKSLVTALVEAAMTADYTAVRRLGGQIAKRMAEQNDLEGAKSLQNLLRKRGVPLQTSGYAEALPRDAGSRLPLIEEGQWPTTPIMLGGEAGQTISQFIEDAQHIGLLAEKGVSARLGLLLYGPPGTGKTLLAGHIAASLRRPLYVARLDSLISSRLGETAKNIRGIFEFVPARNAVLFLDEMDAIAKLRDDRHELGELKRVVNTVLQGLDSLTDDVVTVGATNHPHLLDPAIWRRFPYKVELTLPDEDVRASMWEHFLFLGDEARKDDGRLLARVSDGLNGADIENIALAARRRAILSNQDASLAHILLAVGASRTGSPRLLDNRELDTADKRTLTGLLHDKGGISQSDISKIVGVSRQMVHRYLKETLDG
>NZ_CP045354.1|WP_152499525.1|771365_771929_-|recombinase-family-protein
MKIGYIRTSTGDQTGAGQREALKAAGCERIFHDKGVSGGAVCKPQLERALNAASEGGALVVTRLDRLARSMKFLIEDVERIGRFGIDFVSLHEAIDTTTPGGRLFFHISAAYAEFERDVIRQRTKEGMAAAKRAGRPVGRPPAITDARWPGIRHLLDGGMTITAAARTAGVPRQAIYRRLEADAKAD
>NZ_CP045354.1|WP_152499526.1|772164_772635_-|hypothetical-protein
MITRHDVNNALAEFSRQTGLGELSLGPDDVASAEFGDEGIVAICFDETVGCVRLLSPVGQLDHSMPIAHQAALLRQTLAFNIENMSCLGMEDDAGVFLLTLQIWSLDSFVEQVSDFARQSIGVSDWLENFDADEAAYAEVDGSLPSDETAPVVLKP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP045354_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045354_3

761035-761428

Orphan

Consensus_repeat	Method
GCATTAGGAAACAGCTTTTTCAACTCTTTGAGCC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP045354_3

>merge|NZ_CP045354|3|761035-761428|CRISPRCasFinder
TGACTAGGAATAAATAATTTCAGCTCTTTGAGCAGCTCCATATGATCGGCATTAAGCCAACGAACTGAGTCAACAAGGTCTATGAGGGACGCATTAGGAAACAGCTTTTTCAACTCTTTGAGCCGTACCATAGCTGCGTCATCAAGCCGAGAAGCTGCATAAAAAAGCTCTTTGAAGGATGCATTAGGAAACAGCTTTTTCGACTCTTTGAGCCACCCCATGCCTTCACCATCCAGCTTGCAAGCCGCCTTAGAAAGACTTTTAGGGGATCCATTTTCAAACAGCTGTTTCAGCTCTTTAAGCCGCCTCATGCTCTCGGCATCAAGTGTATGGGCCAGTCTATAACATTGTCTCATGGACGCATCAGGAAACAGCAATAGCAACTCACACATCA

>NZ_CP045354|3|3|761035-761428|CRISPRCasFinder
TGACTAGGAATAAATAATTTCAGCTCTTTGAGCA	GCTCCATATGATCGGCATTAAGCCAACGAACTGAGTCAACAAGGTCTATGAGGGAC
GCATTAGGAAACAGCTTTTTCAACTCTTTGAGCC	GTACCATAGCTGCGTCATCAAGCCGAGAAGCTGCATAAAAAAGCTCTTTGAAGGAT
GCATTAGGAAACAGCTTTTTCGACTCTTTGAGCC	ACCCCATGCCTTCACCATCCAGCTTGCAAGCCGCCTTAGAAAGACTTTTAGGGGAT
CCATTTTCAAACAGCTGTTTCAGCTCTTTAAGCC	GCCTCATGCTCTCGGCATCAAGTGTATGGGCCAGTCTATAACATTGTCTCATGGAC
GCATCAGGAAACAGCAATAGCAACTCACACATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045354.1\|WP_152499522.1\|767144_767393_-\|DUF2188-domain-containing-protein	unknown	unknown	gnl\|CDD\|378323
NZ_CP045354.1\|WP_152499525.1\|771365_771929_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP045354.1\|WP_152499514.1\|751597_751858_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|274227
NZ_CP045354.1\|WP_173005872.1\|757306_757468_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499395.1\|758202_758631_+\|MucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227293
NZ_CP045354.1\|WP_152499521.1\|765406_765895_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP045354.1\|WP_152499523.1\|767395_769669_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173793
NZ_CP045354.1\|WP_152499519.1\|763351_764884_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP045354.1\|WP_173005855.1\|760313_760511_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499469.1\|762528_762897_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237522
NZ_CP045354.1\|WP_152499516.1\|752171_752567_-\|antirestriction-protein-ArdA	unknown	unknown	gnl\|CDD\|377800
NZ_CP045354.1\|WP_152504098.1\|755454_757089_+\|ATP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274289
NZ_CP045354.1\|WP_152499526.1\|772164_772635_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341100
NZ_CP045354.1\|WP_152499433.1\|765929_767017_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP045354.1\|WP_152504088.1\|757634_757889_+\|WGR-domain-containing-protein	unknown	unknown	gnl\|CDD\|153425
NZ_CP045354.1\|WP_152499515.1\|751847_752147_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP045354.1\|WP_152499520.1\|765104_765398_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP045354.1\|WP_152499524.1\|769661_770786_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223540
NZ_CP045354.1\|WP_152499513.1\|751235_751544_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045354.1\|WP_152499517.1\|752916_754149_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773

Protein	Function_ID	Function_description	E-value
NZ_CP045354.1\|WP_152499522.1\|767144_767393_-\|DUF2188-domain-containing-protein	gnl\|CDD\|378323	pfam09954, DUF2188, Uncharacterized protein conserved in bacteria (DUF2188). This domain, found in various hypothetical bacterial proteins, has no known function.	4.1326e-11
NZ_CP045354.1\|WP_152499525.1\|771365_771929_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	2.75286e-48
NZ_CP045354.1\|WP_152499514.1\|751597_751858_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|274227	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15. [Cellular processes, Other, Mobile and extrachromosomal element functions, Plasmid functions].	2.65318e-16
NZ_CP045354.1\|WP_152499523.1\|767395_769669_-\|S8-family-serine-peptidase	gnl\|CDD\|173793	cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	3.87578e-39
NZ_CP045354.1\|WP_152499517.1\|752916_754149_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	2.75219e-25
NZ_CP045354.1\|WP_152499521.1\|765406_765895_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.80184e-18
NZ_CP045354.1\|WP_152499519.1\|763351_764884_+\|hypothetical-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	8.77371e-23
NZ_CP045354.1\|WP_152499395.1\|758202_758631_+\|MucR-family-transcriptional-regulator	gnl\|CDD\|227293	COG4957, COG4957, Predicted transcriptional regulator [Transcription].	2.53459e-63
NZ_CP045354.1\|WP_152499469.1\|762528_762897_-\|hypothetical-protein	gnl\|CDD\|237522	PRK13822, PRK13822, conjugal transfer coupling protein TraG; Provisional.	0.00923236
NZ_CP045354.1\|WP_152499516.1\|752171_752567_-\|antirestriction-protein-ArdA	gnl\|CDD\|377800	pfam07275, ArdA, Antirestriction protein (ArdA). This family consists of several bacterial antirestriction (ArdA) proteins. ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification.	0.0019658
NZ_CP045354.1\|WP_152504098.1\|755454_757089_+\|ATP-binding-domain-containing-protein	gnl\|CDD\|274289	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.	2.89427e-58
NZ_CP045354.1\|WP_152499526.1\|772164_772635_-\|hypothetical-protein	gnl\|CDD\|341100	cd16364, T3SC_I_like, class I type III secretion system (T3SS) chaperones and similar proteins. This family contains class I type III secretion system (T3SS) chaperones mainly found in Gram-negative bacteria such as Pseudomonas, Yersinia, Salmonella, Escherichia and Erwinia, among others. A wide variety of these bacterial pathogens and symbionts require a T3SS to inject eukaryotic host cells with effector proteins important for suppressing host defenses and establishing infection. Many of these effector proteins interact with specific type III secretion chaperones prior to secretion. These T3SS chaperones have been classified as class I type III secretion chaperones (T3SC), which are small structurally conserved dimers that interact specifically with T3SS effector proteins. Class I T3SC consists of two subclasses: IA and IB. Class IA T3SC binds a single effector, whereas class IB T3SC binds to several effectors. Class IA and Class IB T3SCs typically exhibit little sequence similarities, but share a common overall heart-shaped structure fold (alpha-beta-beta-beta-alpha-beta-beta-alpha) and features, such as a small size, an acidic pI and an amphipathic C-terminal alpha-helix. Chaperone protein CesT serves a chaperone function for the enteropathogenic Escherichia coli (EPEC) translocated intimin receptor (Tir) protein, which confers upon EPEC the ability to alter host cell morphology following intimate bacterial attachment. In Pseudomonas aeruginosa, chaperone ExsC binds small secreted protein ExsE as well as the non-secreted anti-activator protein ExsD; it relieves repression of the transcriptional activator ExsA (which activates expression of T3SS genes) by ExsD. P. aeruginosa SpcU binds the cytotoxin ExoU, which is a broad-specificity phospholipase A2 (PLA2) and lysophospholipase, and maintains the N-terminus of ExoU in an unfolded state which is required for secretion. Salmonella enterica chaperone SicP forms a complex with effector protein SptP at an early stage of its secretion process in order to avoid premature degradation, while chaperone SigE binds to effector SigD, which, upon translocation into the host cell, preferentially dephosphorylates specific inositol phospholipids that are thought to be crucial for subsequent activation of the host cell Ser-Thr kinase Akt. This family also includes Yersinia chaperone/escortee pairs SycE/YopE, SycH/YopH, SycT/YopT and SycN+YscB/YopN, all of which bind to specific Yersinia outer proteins (Yops). Also included are several DspF and related sequences from several plant pathogenic bacteria. The "disease-specific" (dsp) region next to the hrp gene cluster of Erwinia amylovora is required for pathogenicity but not for elicitation of the hypersensitive reaction. In addition, a group of proteins including Escherichia coli YbjN, Erwinia amylovora AmyR, and their homologs, are included in this family. They share a class I T3SC-like fold with T3SS chaperone proteins but appear to function independently of the T3SS.	2.87336e-09
NZ_CP045354.1\|WP_152499433.1\|765929_767017_-\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.93358e-25
NZ_CP045354.1\|WP_152504088.1\|757634_757889_+\|WGR-domain-containing-protein	gnl\|CDD\|153425	cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.	1.86544e-26
NZ_CP045354.1\|WP_152499515.1\|751847_752147_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.10933e-17
NZ_CP045354.1\|WP_152499520.1\|765104_765398_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	1.16228e-06
NZ_CP045354.1\|WP_152499524.1\|769661_770786_-\|AAA-family-ATPase	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	1.41681e-39

>NZ_CP045354.1|WP_173005855.1|760313_760511_-|hypothetical-protein
MNPSISSGNDLVRIGLPDDWLGLVGVVLSDEAFDGFLAINDGMKDAVFELPPAQFGEEAFDGIEP
>NZ_CP045354.1|WP_152499395.1|758202_758631_+|MucR-family-transcriptional-regulator
MNDINAETSLIDCTADIVAAYVSNNTVNTSDLTGLISSVHEALRKNSDGTLDEAPQEPAVPINKSVHSDYIICLEDGKRFKSLKRHLKAYYGMTPEDYRAKWDLKESYPMVAPNYAALRAELAKKSGLGTKYGRSKGAKTRT
>NZ_CP045354.1|WP_152504088.1|757634_757889_+|WGR-domain-containing-protein
MLQTYLEKLDPPNNAARFYRMAVLPNLFGEWTLYREWGRIGQGGQVRLDCYEHESQAVAALMALEASKRARGYWAEPQQRTMFD
>NZ_CP045354.1|WP_173005872.1|757306_757468_+|hypothetical-protein
MTALSTPRLQAWKVLSYACPLERLGWPPGLFAPQIVDRICIFIAARVQILFMI
>NZ_CP045354.1|WP_152504098.1|755454_757089_+|ATP-binding-domain-containing-protein
MDGNPQASRVVLAHRRADVKALNEAIRSTLQEWGALTKGAEAGEVVAETNDGTRSFASGDRIVFLENNRELGVKNGMLGTVERIETSGDNLAPRLVARLDGENGRSVQVDLDTYKAIDHGYATTIHKSQGATVDRAFVLASSTMDRHLTYVAMTRHRKDVQLYADASAFAGRSASHASGQSSGHTSGRLVAHGAAPFEHKQGNAKSYFVTLETAQGAQHTTWGVDLERALGEARPKIGDMIGLRREGSQSVRLPDGRTVERNAWAVQSGEELAYDKLAEQLSRSGAKETTLDYTAAFAERRGIASTLGINSEIEVKGLEGGLAARHDNAPEKRVFSMDNGSIDEHSGGPVKENDQESEASPDRDRPAAHYGAMGERVRSQADPFETFGRVERPDGKAGPAPQSNGAQKTPQPPVKQLPFNDSLVDRQLEKISHHEDPDVALSALARRATLHKKAQSGREREMMVSLFKKAREHPDAWKLLADRLAQNAETQPLANAVNKALAPKPDLEKENHKQKETGQKRGMENKARSQTTARNRGKDRGMSR
>NZ_CP045354.1|WP_152499517.1|752916_754149_-|IS110-family-transposase
MTDASIAQTEPVLVAIDIAKSRHEVLLSIPGRKRRRRLTVLNQLDDFNRLIALLRDYGRPVRVAFEATGNYHRALAYRLGSAGFEVKLVSSVSLARTREALNNSWDKNDPKDAQVILHMMQIGNEQFYHDPVLCGTNDLQELSKTHDIVSRSKTELWHRVLTHYLPLYFPEAERFHRSSRSDWFFAFLERYPSPHFISAMSQEAFIADAWEVVGRKVSKERLLADIYETAKTSVGLPIAPDSDAAKMFRMVLAEGRSLIAQRNQIEGLAEALLKENADYTLLTSIPGIGAINALTILAEAGDLRRFQHHRQFLKFCGMDLATIQSGTFRGQTKLSKYGNARLRRTLWMAGQVAINQRTNSFRDKFERYIAKDRQNTHLRRKAYTAIAAKMARTIHGIIKRGEPYRPFFEG
>NZ_CP045354.1|WP_152499516.1|752171_752567_-|antirestriction-protein-ArdA
MVEEFEFSYHGDSDLDFYLFSALGIGQSTILPFIEKVDEWSEDAKYCLIVAVGECGMAFDIEADDPYDLDVDFYHDMNLIELARVFVDEGLFGNIPSNLEYYIDYDAMAADLAHDYTEILIDGVVCVYRCA
>NZ_CP045354.1|WP_152499515.1|751847_752147_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAYRLTRKAAEDIQNIFGEGTLMFGEAQAIKYHGKLEACFELLAGNPHISRAREEINPPVHIHPIGSHIIVYSVDEQRDILIIRVRHGREDWQDNPIEP
>NZ_CP045354.1|WP_152499514.1|751597_751858_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MATMNVSLPDPMKDWVEAQAATGRYANASDYVRDLIRRDQERADKIAQMQKLVSEGLDSGISDQSMADILQSARARMKSASTDDGL
>NZ_CP045354.1|WP_152499513.1|751235_751544_+|hypothetical-protein
MDQYEFEKYLENQPKISGTEPVGRFVKNAFGVEEKLVLPDAYWRYVDWLVEAEAVEIERYIVDCDNERGERTLSENLMDWLYFDMTERKKAFHPLPSWLEFI
>NZ_CP045354.1|WP_152499469.1|762528_762897_-|hypothetical-protein
MFWKSDDIITLYWVWFQPHLAAMPDGNVVQHLRYLNQVFGLLTEADVQFLVLGCANGLAGIAALAAIARTSLNPDSRKQSKSDLFGDARWMRRRIMAKLSRKGVYIIKPFGLWHDYTREMNA
>NZ_CP045354.1|WP_152499519.1|763351_764884_+|hypothetical-protein
MKSNYFEINASYPTEQSTVATQYPTAEMTYLSDDAANYSRATHTDMPTNFASNAISDYSASFGTMLDNGTVLVSSGQFDVTWSAGSTAEPLVLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDTLIGTADDFSIDRTTSSSGSDTLTGSSGDDTLIGTADDFTIDRTTSSSGSDTLTGSSGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDKLIGGKGDDQMYGGAGSDTFVFKPGFGSDRISDFDMDADRLDFSSMIDANGVYMLTATKQSDQGLELAFSDGSSLMLDSVSATKIGDPNMMFLDDLTF
>NZ_CP045354.1|WP_152499520.1|765104_765398_+|transposase
MSKRKRHAPEFKAKVALEALKGEETVSELASRFGVHPTMIHQWKRALLEGASDVFARGGKRKPEIDEDQVKELHAKIGELAVANDFLSRKLKPWGMK
>NZ_CP045354.1|WP_152499521.1|765406_765895_+|IS3-family-transposase
MIEPRHPDLSVGKQCSLLSISRSSFYYTPKGESEMNLALMRQIDEQFLEAPFFGVRQMTWHLKNEGHPVNEKRVRRLMRLMGLMPIYQKPNTSRPAKGHKIWPYLLKGLRVERPNQVWASDITYLPMRRGFLYLVAIMDWFTRKVLAWRISNTLEADFCVEG
>NZ_CP045354.1|WP_152499433.1|765929_767017_-|IS3-family-transposase
MKKSRITESQILAVLKQGESGVPVADLCREHGISNATYYNWRSKYGGMDASLMSEMKAMAEENRRLKKMYAEMAMQNELLKDAPGKKALRPSQRREMAMNAIRLRGVSIALACRTFQISESCYRYERKLGDENAEIADWLVRLTTTHRTWGFGLCFLYLRNVKGFAWNHKRVRRIYRALELNLRIKPKKRLVREKPEPLVVPNEANVTWSMDFMSDQLADGRSFRTLNVLDDFNREGLGIEVDISIQALRVIRTLERIIEWRGKPLNIRVDNGPENVSAALQMWASRRGIGLQYIQPGKPQQNAYIERYNRTVRHEWLGQYIFNTIKEAQDHATRWLWTYNNERPNMAIGGVTPKMKLTAAA
>NZ_CP045354.1|WP_152499522.1|767144_767393_-|DUF2188-domain-containing-protein
MSKDKDRTIYRRPSDNKWVDKRNDAGRGFVFDTQAAAIASGREKLVNAGGGELTVKGRDGKIRSKDTLGGGNDPMPPRDREH
>NZ_CP045354.1|WP_152499523.1|767395_769669_-|S8-family-serine-peptidase
MADPPRQPLLNPVLRFTKDPKPEGVSGGGKNAASIMTGRLPKQRRVLSRQFRDLGTQATQQPRFDGRVVLYASMFDDSLAPSYTPNDLFQATRSARLIAPYRSGYLVEIAADQLDRYAGIVESSGLTKDQVDISRIEAVRFFESADAGGAASLDEIWESAPVTDAGKAFVVWLMPLRGRDAAEELIQRFSVLRDGTIVPPPPLLAGIDVGTDTDVPVGMRRALKTLAASGDRFNLAMRTYRLHHRARTTVLVPSRTALDQLIASGTVFRIEPVQSISSTSPGEGREPDRPLPRDMTTLPIVGVVDGGLTAASYRHAEAWRAPPLIADGAADTQHGNWVTSLVVQGHDWNNNLNLPPLYCQVGTVQAVAKKGSRAFVDPQDFVAYLDSVMASNPETRVWNLSLNQPYSCDLEAVSALGHDIAMLARKHSVLPIISIGNKPGMRLQPPGDCEAAITVGGRVHDNNGDPAGKCPVSLCGPGPSSMQKPDLSHFSHVRALGGVVIRGSSFATSLTSPLAAHTMERLREASPDLVKALLLHNSDGVTFDPALGFGTPTTASLPWECRPGFVTLQWRASLRPSAAYYWELPIPESLKRTGKLKGTGALTAILNPLPMVTDYAGPNYFSVRLATALQYQRGKTPKNAAKFHNLLGSLDTGKITEQEARSFDHKWSPIRHHKNDFQGVSFESDMLRIYARIYARDLYLYGYSSADEIPEMETIFVLSLGTGDENDDVYNELRDQLGAFVETAVVEADIDVDNEGF
>NZ_CP045354.1|WP_152499524.1|769661_770786_-|AAA-family-ATPase
MEVDKSLVTALVEAAMTADYTAVRRLGGQIAKRMAEQNDLEGAKSLQNLLRKRGVPLQTSGYAEALPRDAGSRLPLIEEGQWPTTPIMLGGEAGQTISQFIEDAQHIGLLAEKGVSARLGLLLYGPPGTGKTLLAGHIAASLRRPLYVARLDSLISSRLGETAKNIRGIFEFVPARNAVLFLDEMDAIAKLRDDRHELGELKRVVNTVLQGLDSLTDDVVTVGATNHPHLLDPAIWRRFPYKVELTLPDEDVRASMWEHFLFLGDEARKDDGRLLARVSDGLNGADIENIALAARRRAILSNQDASLAHILLAVGASRTGSPRLLDNRELDTADKRTLTGLLHDKGGISQSDISKIVGVSRQMVHRYLKETLDG
>NZ_CP045354.1|WP_152499525.1|771365_771929_-|recombinase-family-protein
MKIGYIRTSTGDQTGAGQREALKAAGCERIFHDKGVSGGAVCKPQLERALNAASEGGALVVTRLDRLARSMKFLIEDVERIGRFGIDFVSLHEAIDTTTPGGRLFFHISAAYAEFERDVIRQRTKEGMAAAKRAGRPVGRPPAITDARWPGIRHLLDGGMTITAAARTAGVPRQAIYRRLEADAKAD
>NZ_CP045354.1|WP_152499526.1|772164_772635_-|hypothetical-protein
MITRHDVNNALAEFSRQTGLGELSLGPDDVASAEFGDEGIVAICFDETVGCVRLLSPVGQLDHSMPIAHQAALLRQTLAFNIENMSCLGMEDDAGVFLLTLQIWSLDSFVEQVSDFARQSIGVSDWLENFDADEAAYAEVDGSLPSDETAPVVLKP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP045354_1	1.1\|645688\|52\|NZ_CP045354\|CRISPRCasFinder	645688-645739	52	NZ_CP045354.1	747212-747263	0	1.0
NZ_CP045354_1	1.2\|645778\|52\|NZ_CP045354\|CRISPRCasFinder	645778-645829	52	NZ_CP045354.1	747122-747173	0	1.0
NZ_CP045354_1	1.3\|645868\|52\|NZ_CP045354\|CRISPRCasFinder	645868-645919	52	NZ_CP045354.1	747032-747083	0	1.0
NZ_CP045354_1	1.4\|645958\|52\|NZ_CP045354\|CRISPRCasFinder	645958-646009	52	NZ_CP045354.1	746942-746993	0	1.0
NZ_CP045354_1	1.5\|646048\|52\|NZ_CP045354\|CRISPRCasFinder	646048-646099	52	NZ_CP045354.1	746852-746903	0	1.0
NZ_CP045354_1	1.6\|646138\|52\|NZ_CP045354\|CRISPRCasFinder	646138-646189	52	NZ_CP045354.1	746762-746813	0	1.0
NZ_CP045354_2	2.1\|760685\|56\|NZ_CP045354\|CRISPRCasFinder	760685-760740	56	NZ_CP045354.1	675280-675335	1	0.982

1. spacer 1.1|645688|52|NZ_CP045354|CRISPRCasFinder matches to position: 747212-747263, mismatch: 0, identity: 1.0

gcctcacaccaccggccttaagccaacgagcttcattagaaagctcttcaag	CRISPR spacer
gcctcacaccaccggccttaagccaacgagcttcattagaaagctcttcaag	Protospacer
****************************************************

2. spacer 1.2|645778|52|NZ_CP045354|CRISPRCasFinder matches to position: 747122-747173, mismatch: 0, identity: 1.0

gcccgatagtcgcgtaatcaagacaattaagtacatcaacaagctctttgaa	CRISPR spacer
gcccgatagtcgcgtaatcaagacaattaagtacatcaacaagctctttgaa	Protospacer
****************************************************

3. spacer 1.3|645868|52|NZ_CP045354|CRISPRCasFinder matches to position: 747032-747083, mismatch: 0, identity: 1.0

accccacagccgcgtcattaaacatttcaactacaacaacaagctctttgaa	CRISPR spacer
accccacagccgcgtcattaaacatttcaactacaacaacaagctctttgaa	Protospacer
****************************************************

4. spacer 1.4|645958|52|NZ_CP045354|CRISPRCasFinder matches to position: 746942-746993, mismatch: 0, identity: 1.0

gccccacagccgcgtcattaaacatttcaactacaacaacaagctctttgaa	CRISPR spacer
gccccacagccgcgtcattaaacatttcaactacaacaacaagctctttgaa	Protospacer
****************************************************

5. spacer 1.5|646048|52|NZ_CP045354|CRISPRCasFinder matches to position: 746852-746903, mismatch: 0, identity: 1.0

gccccatgccttcaccatccagcttgcaagccgccttagaaagacttttagg	CRISPR spacer
gccccatgccttcaccatccagcttgcaagccgccttagaaagacttttagg	Protospacer
****************************************************

6. spacer 1.6|646138|52|NZ_CP045354|CRISPRCasFinder matches to position: 746762-746813, mismatch: 0, identity: 1.0

gcctcatgctctcggcatcaagtgtatgagccagtttataacatcttctcat	CRISPR spacer
gcctcatgctctcggcatcaagtgtatgagccagtttataacatcttctcat	Protospacer
****************************************************

7. spacer 2.1|760685|56|NZ_CP045354|CRISPRCasFinder matches to position: 675280-675335, mismatch: 1, identity: 0.982

gccccataccatcggcatcaagttgacgggtcgcgccgcgacattctctgaaggtc	CRISPR spacer
gccccataccatcggcatcaagttgacgggccgcgccgcgacattctctgaaggtc	Protospacer
******************************.*************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

578775 : 623804

Aurantimonas_phage(25.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152499388.1\|578775_579087_-\|transposase	transposase	NA	NA	NA	NA
WP_152499389.1\|579167_579557_-\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	9.7e-10	37.5
WP_152499390.1\|579864_580353_-	hypothetical protein	NA	NA	NA	NA
WP_152499391.1\|581706_581901_+	hypothetical protein	NA	NA	NA	NA
WP_152499392.1\|583886_584414_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_152499393.1\|585175_585799_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_152499394.1\|586796_587840_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_152499395.1\|588280_588709_-	MucR family transcriptional regulator	NA	NA	NA	NA
WP_152504088.1\|589022_589277_-	WGR domain-containing protein	NA	NA	NA	NA
WP_173005851.1\|589443_589605_-	hypothetical protein	NA	NA	NA	NA
WP_152499396.1\|589863_591729_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_152499397.1\|591725_592157_-	hypothetical protein	NA	NA	NA	NA
WP_152499398.1\|592168_593944_-	ATP-binding domain-containing protein	NA	NA	NA	NA
WP_152499399.1\|593973_594138_+	hypothetical protein	NA	NA	NA	NA
WP_152499400.1\|594484_595660_+	hypothetical protein	NA	NA	NA	NA
WP_152499401.1\|595922_596231_-	hypothetical protein	NA	NA	NA	NA
WP_152499402.1\|596227_596959_-	AAA family ATPase	A0A0A8IL09	Aurantimonas_phage	9.0e-25	32.4
WP_152499403.1\|597368_598067_+	hypothetical protein	NA	NA	NA	NA
WP_152499404.1\|598063_598498_+	hypothetical protein	NA	NA	NA	NA
WP_152499405.1\|598564_599878_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_173005852.1\|600916_601099_-	hypothetical protein	NA	NA	NA	NA
WP_152499406.1\|601162_601372_+	hypothetical protein	NA	NA	NA	NA
WP_152499407.1\|601459_602635_+	replication protein C	NA	NA	NA	NA
WP_152499408.1\|602726_602975_+	plasmid stabilization protein	NA	NA	NA	NA
WP_152499409.1\|602971_603385_+	PIN domain-containing protein	NA	NA	NA	NA
WP_152499410.1\|603593_604163_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	4.5e-32	43.3
WP_152499411.1\|604302_607257_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.7e-192	38.8
WP_152499412.1\|607280_607970_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	5.9e-42	43.5
WP_152499413.1\|608173_608503_+	hypothetical protein	A0A0A8IL09	Aurantimonas_phage	2.7e-21	46.8
WP_152499414.1\|608499_608787_+	hypothetical protein	NA	NA	NA	NA
WP_152499415.1\|609054_609534_-	DUF4411 family protein	NA	NA	NA	NA
WP_152499416.1\|609530_610697_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_152499417.1\|611089_611332_+	hypothetical protein	NA	NA	NA	NA
WP_152499418.1\|611356_611665_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_152499419.1\|611863_612430_+	recombinase family protein	A0A0C4UR34	Shigella_phage	1.8e-33	46.9
WP_152504089.1\|612719_612947_+	hypothetical protein	NA	NA	NA	NA
WP_152499420.1\|614598_616509_-	Ti-type conjugative transfer system protein TraG	NA	NA	NA	NA
WP_152499421.1\|616429_616687_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_152499422.1\|616733_616985_-	pilus assembly protein	NA	NA	NA	NA
WP_152499423.1\|617517_621153_+	Ti-type conjugative transfer relaxase TraA	A0A0K2FLP8	Brevibacillus_phage	4.8e-10	22.8
WP_152499424.1\|621527_621938_+	MucR family transcriptional regulator	NA	NA	NA	NA
WP_152499425.1\|622128_622797_+	conjugative transfer signal peptidase TraF	NA	NA	NA	NA
WP_152499426.1\|622716_623804_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

635058 : 673904

Staphylococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152499429.1\|635058_636145_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_152499430.1\|636452_637031_+	hypothetical protein	NA	NA	NA	NA
WP_152499431.1\|638471_639755_-	hypothetical protein	NA	NA	NA	NA
WP_152499432.1\|639901_640141_-	hypothetical protein	NA	NA	NA	NA
WP_152499433.1\|640171_641259_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_152499434.1\|643200_643752_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_152499435.1\|644437_644929_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_173005855.1\|645344_645542_-	hypothetical protein	NA	NA	NA	NA
WP_152499436.1\|645538_647041_-	hypothetical protein	NA	NA	NA	NA
WP_152499437.1\|647717_648023_-	hypothetical protein	NA	NA	NA	NA
WP_152499438.1\|650195_650666_-	Fic family protein	NA	NA	NA	NA
WP_152504089.1\|650673_650901_-	hypothetical protein	NA	NA	NA	NA
WP_173005856.1\|651288_651426_+	hypothetical protein	NA	NA	NA	NA
WP_152499439.1\|651490_651706_+	hypothetical protein	NA	NA	NA	NA
WP_152499440.1\|651740_652286_+	Fic family protein	NA	NA	NA	NA
WP_173005857.1\|652316_653087_+	BID domain-containing protein	NA	NA	NA	NA
WP_173006216.1\|653366_654794_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_173005858.1\|654726_655527_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_152499443.1\|656934_657156_+	hypothetical protein	NA	NA	NA	NA
WP_152499444.1\|658145_658715_+	hypothetical protein	NA	NA	NA	NA
WP_173005859.1\|659099_659429_+\|transposase	transposase	NA	NA	NA	NA
WP_173005860.1\|659622_660339_+	porin family protein	NA	NA	NA	NA
WP_152499447.1\|660526_661279_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.5e-30	36.8
WP_173005815.1\|662570_662765_+	hypothetical protein	NA	NA	NA	NA
WP_152499448.1\|662721_663036_+	hypothetical protein	NA	NA	NA	NA
WP_152499449.1\|663032_663848_+	AAA family ATPase	NA	NA	NA	NA
WP_152499450.1\|663905_664220_+	hypothetical protein	NA	NA	NA	NA
WP_173005861.1\|664339_664642_+	hypothetical protein	NA	NA	NA	NA
WP_152499451.1\|664648_664933_+	DUF1467 family protein	NA	NA	NA	NA
WP_152499452.1\|665042_665609_+	recombinase family protein	A0A1S6L009	Salmonella_phage	6.3e-34	45.8
WP_152499453.1\|666111_666627_+	hypothetical protein	NA	NA	NA	NA
WP_152499454.1\|666708_667008_+\|transposase	transposase	NA	NA	NA	NA
WP_152504091.1\|667635_667920_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_152499455.1\|667937_668243_+	HigA family addiction module antidote protein	B0VK57	Azospirillum_phage	7.9e-07	38.1
WP_152504092.1\|669400_669658_+	hypothetical protein	NA	NA	NA	NA
WP_152499456.1\|670100_670826_-	hypothetical protein	NA	NA	NA	NA
WP_173005862.1\|671949_672087_-	hypothetical protein	NA	NA	NA	NA
WP_152504094.1\|672345_672657_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_152499457.1\|672817_673904_+\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

695385 : 754149

Klebsiella_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152504095.1\|695385_696117_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_173005871.1\|696740_697286_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	7.0e-22	39.5
WP_152499475.1\|697371_700533_-	N-6 DNA methylase	NA	NA	NA	NA
WP_152499476.1\|700537_701206_-	NYN domain-containing protein	NA	NA	NA	NA
WP_152499477.1\|701516_702212_+	YfbU family protein	NA	NA	NA	NA
WP_152499478.1\|702851_703037_+	hypothetical protein	NA	NA	NA	NA
WP_152499479.1\|703033_703741_+	UPF0149 family protein	NA	NA	NA	NA
WP_152499480.1\|704335_705958_+	ATP-binding cassette domain-containing protein	F2Y302	Organic_Lake_phycodnavirus	5.0e-07	22.7
WP_152499481.1\|705941_706427_+	hypothetical protein	NA	NA	NA	NA
WP_152499482.1\|706442_707261_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_152499483.1\|707263_708106_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_152499484.1\|708186_708918_-	hypothetical protein	NA	NA	NA	NA
WP_152499485.1\|712808_713096_+	mobilization protein	NA	NA	NA	NA
WP_152499486.1\|715888_716395_+	hypothetical protein	NA	NA	NA	NA
WP_152499487.1\|716556_716877_+	hypothetical protein	NA	NA	NA	NA
WP_152504096.1\|717344_718097_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_152499488.1\|719243_719996_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.3e-31	37.3
WP_152499489.1\|720087_720549_-	hypothetical protein	NA	NA	NA	NA
WP_152499490.1\|721507_721834_+\|transposase	transposase	NA	NA	NA	NA
WP_152499491.1\|722309_723146_-	hypothetical protein	NA	NA	NA	NA
WP_152499492.1\|723278_725306_-	recombinase RmuC	A0A1X9I6W8	Streptococcus_phage	9.2e-27	28.4
WP_152499493.1\|725302_726838_-	hypothetical protein	NA	NA	NA	NA
WP_152499494.1\|726848_727064_-	hypothetical protein	NA	NA	NA	NA
WP_152504097.1\|727060_728899_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_152499495.1\|728949_729360_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_152499496.1\|729356_730301_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_152499497.1\|730399_732925_-	hypothetical protein	NA	NA	NA	NA
WP_152499498.1\|732935_734036_-	conjugal transfer protein TrbI	NA	NA	NA	NA
WP_152499499.1\|734035_734395_-	hypothetical protein	NA	NA	NA	NA
WP_152499500.1\|734398_735403_-	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_152499501.1\|735399_736101_-	hypothetical protein	NA	NA	NA	NA
WP_173005868.1\|736100_736268_-	hypothetical protein	NA	NA	NA	NA
WP_152499502.1\|736295_737345_-	type IV secretion system protein	NA	NA	NA	NA
WP_152499503.1\|737344_738193_-	hypothetical protein	NA	NA	NA	NA
WP_152499504.1\|738174_740526_-	type IV secretion system protein B4	NA	NA	NA	NA
WP_152499505.1\|740525_740846_-	hypothetical protein	NA	NA	NA	NA
WP_152499506.1\|740849_741188_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_152499507.1\|741200_741710_-	hypothetical protein	NA	NA	NA	NA
WP_152499508.1\|741706_742489_-	conjugal transfer protein TraL	NA	NA	NA	NA
WP_173005872.1\|742571_742733_+	hypothetical protein	NA	NA	NA	NA
WP_152504088.1\|742899_743154_+	WGR domain-containing protein	NA	NA	NA	NA
WP_152499509.1\|743357_744800_-	hypothetical protein	NA	NA	NA	NA
WP_173005873.1\|745254_745623_+	hypothetical protein	NA	NA	NA	NA
WP_152499512.1\|745909_747412_+	hypothetical protein	NA	NA	NA	NA
WP_173005855.1\|747408_747606_+	hypothetical protein	NA	NA	NA	NA
WP_152499435.1\|748021_748513_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_152499457.1\|748993_750081_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_152499513.1\|751235_751544_+	hypothetical protein	NA	NA	NA	NA
WP_152499514.1\|751597_751858_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_152499515.1\|751847_752147_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_152499516.1\|752171_752567_-	antirestriction protein ArdA	NA	NA	NA	NA
WP_152499517.1\|752916_754149_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

765104 : 824519

Staphylococcus_phage(28.57%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152499520.1\|765104_765398_+\|transposase	transposase	NA	NA	NA	NA
WP_152499521.1\|765406_765895_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_152499433.1\|765929_767017_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_152499522.1\|767144_767393_-	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_152499523.1\|767395_769669_-	S8 family serine peptidase	NA	NA	NA	NA
WP_152499524.1\|769661_770786_-	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	1.9e-18	29.3
WP_152499525.1\|771365_771929_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.1e-33	46.9
WP_152499526.1\|772164_772635_-	hypothetical protein	NA	NA	NA	NA
WP_173005874.1\|772702_774034_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_152499528.1\|775061_775511_+	hypothetical protein	NA	NA	NA	NA
WP_152499529.1\|778514_780128_+	hypothetical protein	NA	NA	NA	NA
WP_152499457.1\|780269_781357_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_152499530.1\|782827_783067_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_152499531.1\|783084_783192_+	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
WP_152499532.1\|783208_783874_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_152499533.1\|784210_786409_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.2e-159	43.9
WP_152499433.1\|786599_787686_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_173005875.1\|788145_788259_+\|transposase	transposase	NA	NA	NA	NA
WP_152499447.1\|789654_790407_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.5e-30	36.8
WP_152499534.1\|790970_791849_+	hypothetical protein	NA	NA	NA	NA
WP_152504099.1\|792029_793463_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_173006217.1\|793539_794397_-	RNA polymerase factor sigma-32	A0A2I7S9W6	Vibrio_phage	1.9e-10	28.0
WP_152499536.1\|794590_795181_-	CarD family transcriptional regulator	NA	NA	NA	NA
WP_152499537.1\|795636_795969_-	DUF3470 domain-containing protein	NA	NA	NA	NA
WP_152499538.1\|796193_796595_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_152499539.1\|796594_799753_-	helicase	A0A248SJQ0	Salicola_phage	5.8e-28	32.9
WP_152499540.1\|800575_804016_+	pyruvate carboxylase	NA	NA	NA	NA
WP_152499541.1\|804207_804804_+	cytochrome P460 family protein	NA	NA	NA	NA
WP_173006218.1\|804940_806503_+	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_152499543.1\|806561_807314_-	glutamine amidotransferase	NA	NA	NA	NA
WP_152499544.1\|807406_807883_-	TerB family tellurite resistance protein	NA	NA	NA	NA
WP_152499545.1\|808189_809452_+	peptidase	NA	NA	NA	NA
WP_152499546.1\|809538_811068_+	c-type cytochrome	NA	NA	NA	NA
WP_152499547.1\|811067_812141_+	hypothetical protein	NA	NA	NA	NA
WP_152499548.1\|812121_813279_+	DUF1513 domain-containing protein	NA	NA	NA	NA
WP_152499549.1\|813408_816303_+	AsmA family protein	NA	NA	NA	NA
WP_152499550.1\|816319_817195_-	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA
WP_152499551.1\|817205_818477_-	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_152499552.1\|818473_818968_-	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_152499553.1\|819105_820098_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA
WP_152504100.1\|820364_820595_-	hypothetical protein	NA	NA	NA	NA
WP_152499554.1\|820859_821531_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_152499555.1\|821577_821847_-	hypothetical protein	NA	NA	NA	NA
WP_152499556.1\|821897_824519_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	4.1e-168	38.4

DBSCAN-SWA_5

1278687 : 1293519

Ostreococcus_mediterraneus_virus(20.0%)

portal,integrase,tRNA,capsid,tail,head,terminase,protease

attL 1272356:1272368|attR 1286505:1286517

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1272356:1272368	attL	NA	NA	NA	NA
WP_152499927.1\|1278687_1280076_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_152499928.1\|1280245_1282165_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	A0A0P0CCN8	Ostreococcus_mediterraneus_virus	3.0e-112	41.9
WP_152499929.1\|1282338_1283682_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_152499930.1\|1283902_1284727_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_152499931.1\|1285055_1286060_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_152499932.1\|1286225_1287455_-\|portal	phage portal protein	A4JWZ9	Burkholderia_virus	1.2e-53	33.2
1286505:1286517	attR	NA	NA	NA	NA
WP_152499933.1\|1287451_1287991_-\|head,protease	HK97 family phage prohead protease	A0A1B2APW1	Phage_Wrath	2.1e-26	46.5
WP_173005898.1\|1287987_1288263_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_152499935.1\|1288264_1289500_-\|capsid	phage major capsid protein	Q6R4V3	Vibrio_virus	2.9e-31	30.0
WP_152499936.1\|1289600_1290155_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_152499937.1\|1290240_1290615_-	hypothetical protein	NA	NA	NA	NA
WP_152499938.1\|1290826_1291252_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152499939.1\|1291301_1291880_+	hypothetical protein	NA	NA	NA	NA
WP_152499940.1\|1291887_1293519_-\|terminase	terminase large subunit	K7PLY2	Enterobacterial_phage	1.2e-106	44.7

DBSCAN-SWA_6

1780120 : 1789465

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152500327.1\|1780120_1781176_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	A0A1M7XV31	Cedratvirus	3.3e-12	26.7
WP_152500328.1\|1781175_1782066_+	carbohydrate kinase	NA	NA	NA	NA
WP_152500329.1\|1782095_1783004_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.6e-87	53.7
WP_152500330.1\|1783000_1783912_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.5e-29	34.4
WP_152500331.1\|1783908_1784970_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.3e-84	46.7
WP_152500332.1\|1784957_1785548_-	dTDP-4-dehydrorhamnose 3,5-epimerase	H9NC63	Sphingomonas_phage	1.8e-15	36.4
WP_152500333.1\|1785544_1786828_-	glycosyltransferase	NA	NA	NA	NA
WP_152500334.1\|1786841_1787444_-	winged helix DNA-binding protein	NA	NA	NA	NA
WP_152500335.1\|1787716_1789465_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	2.0e-25	24.9

DBSCAN-SWA_7

3099642 : 3169403

Rhizobium_phage(21.05%)

portal,integrase,capsid,tail,head,terminase,protease

attL 3099500:3099529|attR 3136661:3136690

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3099500:3099529	attL	NA	NA	NA	NA
WP_152501421.1\|3099642_3101022_+\|integrase	integrase	NA	NA	NA	NA
WP_152501422.1\|3101018_3101234_-	hypothetical protein	NA	NA	NA	NA
WP_152501423.1\|3101235_3101469_-	hypothetical protein	NA	NA	NA	NA
WP_152501424.1\|3101468_3101774_-	hypothetical protein	NA	NA	NA	NA
WP_152501425.1\|3101757_3102228_-	hypothetical protein	NA	NA	NA	NA
WP_173005994.1\|3102489_3103233_+	hypothetical protein	NA	NA	NA	NA
WP_152501427.1\|3103680_3103953_-	hypothetical protein	NA	NA	NA	NA
WP_152501428.1\|3104124_3105000_-	hypothetical protein	NA	NA	NA	NA
WP_152501429.1\|3105128_3105506_+	hypothetical protein	NA	NA	NA	NA
WP_152501430.1\|3105508_3106126_-	hypothetical protein	NA	NA	NA	NA
WP_152501431.1\|3106197_3106446_+	hypothetical protein	NA	NA	NA	NA
WP_152501432.1\|3106442_3106817_+	hypothetical protein	NA	NA	NA	NA
WP_152501433.1\|3106800_3107016_+	hypothetical protein	NA	NA	NA	NA
WP_152501434.1\|3107012_3107390_+	hypothetical protein	NA	NA	NA	NA
WP_152501435.1\|3107386_3107659_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152501436.1\|3108316_3108550_+	hypothetical protein	NA	NA	NA	NA
WP_152501437.1\|3108546_3108810_+	DUF2312 domain-containing protein	A0A0F6R615	Sinorhizobium_phage	3.5e-19	52.4
WP_152501438.1\|3108809_3109961_+	DUF5131 family protein	R9TNA8	Rhizobium_phage	2.4e-96	49.9
WP_152501439.1\|3109957_3110215_+	hypothetical protein	NA	NA	NA	NA
WP_173005995.1\|3110211_3110367_+	hypothetical protein	NA	NA	NA	NA
WP_152501440.1\|3110363_3110687_+	DUF4326 domain-containing protein	A0A0R8V0F0	Thermobifida_phage	4.7e-10	38.5
WP_152501441.1\|3110659_3111439_-	hypothetical protein	NA	NA	NA	NA
WP_152501442.1\|3111507_3111777_+	hypothetical protein	NA	NA	NA	NA
WP_152501443.1\|3111773_3113030_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152501444.1\|3113026_3113629_+	hypothetical protein	NA	NA	NA	NA
WP_173005996.1\|3113801_3114152_+	HNH endonuclease	D5L2E6	uncultured_virus	1.1e-07	33.3
WP_152501446.1\|3114234_3114735_+	hypothetical protein	NA	NA	NA	NA
WP_152501447.1\|3114731_3116450_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	1.4e-145	47.7
WP_152504270.1\|3116449_3117700_+\|portal	phage portal protein	B4UTP1	Rhizobium_phage	8.3e-119	53.4
WP_152501448.1\|3117683_3118286_+\|head,protease	HK97 family phage prohead protease	B4UTP2	Rhizobium_phage	3.2e-44	58.0
WP_152501449.1\|3118339_3119617_+\|capsid	phage major capsid protein	B4UTP3	Rhizobium_phage	1.8e-116	54.2
WP_152501450.1\|3119685_3119997_+	hypothetical protein	NA	NA	NA	NA
WP_152501451.1\|3119996_3120548_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_152501452.1\|3120547_3120880_+\|head	phage head closure protein	NA	NA	NA	NA
WP_152501453.1\|3120879_3121314_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_173005997.1\|3121310_3121718_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_152501455.1\|3121721_3122147_+\|tail	phage tail protein	I3UM07	Rhodobacter_phage	7.1e-22	45.0
WP_152501456.1\|3122143_3122473_+	hypothetical protein	NA	NA	NA	NA
WP_152501457.1\|3122659_3124558_+	hypothetical protein	A0A291AUU3	Sinorhizobium_phage	1.9e-13	31.2
WP_152501458.1\|3124557_3125250_+	hypothetical protein	NA	NA	NA	NA
WP_152501459.1\|3125261_3125852_+	hypothetical protein	NA	NA	NA	NA
WP_152501460.1\|3125851_3126232_+	hypothetical protein	NA	NA	NA	NA
WP_152501461.1\|3126233_3128099_+	hypothetical protein	NA	NA	NA	NA
WP_152501462.1\|3128163_3130353_+\|tail	tail fiber domain-containing protein	A0A0K1LLX2	Caulobacter_phage	2.4e-12	45.4
WP_152501463.1\|3130419_3131223_+	secretion activator protein	A0A088F6V6	Sulfitobacter_phage	9.9e-33	40.3
WP_152501464.1\|3131222_3131468_+	hypothetical protein	NA	NA	NA	NA
WP_152501465.1\|3131594_3131954_+	hypothetical protein	NA	NA	NA	NA
WP_152501466.1\|3131972_3132155_-	hypothetical protein	NA	NA	NA	NA
WP_173005998.1\|3133087_3133228_-	hypothetical protein	NA	NA	NA	NA
WP_173005999.1\|3133347_3133971_+	recombinase family protein	A0A1B0VBM1	Salmonella_phage	1.4e-21	39.1
WP_152501468.1\|3133984_3134221_+	hypothetical protein	NA	NA	NA	NA
WP_152501469.1\|3135063_3135339_+	hypothetical protein	NA	NA	NA	NA
WP_152501470.1\|3135349_3135601_+	hypothetical protein	NA	NA	NA	NA
WP_152501471.1\|3135593_3136103_+	hypothetical protein	NA	NA	NA	NA
WP_152501472.1\|3137146_3138079_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
3136661:3136690	attR	NA	NA	NA	NA
WP_152504271.1\|3138241_3140020_+	TRAP transporter fused permease subunit	NA	NA	NA	NA
WP_152501473.1\|3140019_3140601_+	cupin domain-containing protein	NA	NA	NA	NA
WP_152504272.1\|3140885_3141269_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_152501474.1\|3141464_3142043_+	hypothetical protein	NA	NA	NA	NA
WP_173006000.1\|3142113_3142422_+	hypothetical protein	NA	NA	NA	NA
WP_152501476.1\|3142602_3144018_+	magnesium transporter	NA	NA	NA	NA
WP_152501477.1\|3144093_3144534_-	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_173006001.1\|3144583_3145189_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_152501479.1\|3145218_3145947_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_152501480.1\|3146090_3146516_+	Ohr family peroxiredoxin	NA	NA	NA	NA
WP_152501481.1\|3146558_3147371_-	hypothetical protein	NA	NA	NA	NA
WP_152501482.1\|3147712_3148138_+	VOC family protein	NA	NA	NA	NA
WP_152501483.1\|3148195_3148906_+	lysozyme	A0A1U9WQS3	Geobacillus_phage	1.0e-17	30.3
WP_152501484.1\|3148995_3149397_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_152501485.1\|3149397_3149841_+	hotdog fold thioesterase	NA	NA	NA	NA
WP_152504273.1\|3149845_3150295_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_152501486.1\|3150319_3151492_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_152501487.1\|3151514_3151898_+	cupin domain-containing protein	NA	NA	NA	NA
WP_152501488.1\|3152336_3153026_+	hypothetical protein	NA	NA	NA	NA
WP_152501489.1\|3153118_3153808_+	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	1.7e-28	35.7
WP_152501490.1\|3153927_3154503_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_152501491.1\|3154515_3154920_+	ACT domain-containing protein	NA	NA	NA	NA
WP_152504274.1\|3155036_3155891_+	adenylate cyclase	NA	NA	NA	NA
WP_152501492.1\|3156077_3156692_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.9e-28	35.0
WP_152501493.1\|3156764_3157169_-\|protease	Clp protease ClpP	NA	NA	NA	NA
WP_152501494.1\|3157668_3158466_+	YdcF family protein	NA	NA	NA	NA
WP_152501495.1\|3158579_3159827_+	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	9.4e-14	26.8
WP_152501496.1\|3159745_3160468_-	DUF599 family protein	NA	NA	NA	NA
WP_152501497.1\|3160922_3161477_-	hypothetical protein	NA	NA	NA	NA
WP_152504275.1\|3161584_3162469_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_152501498.1\|3162590_3163025_+	DUF1489 family protein	NA	NA	NA	NA
WP_152501499.1\|3163033_3163654_-	WHG domain-containing protein	NA	NA	NA	NA
WP_152504276.1\|3163849_3164365_+	DUF2306 domain-containing protein	NA	NA	NA	NA
WP_152504277.1\|3164503_3165220_+	VWA domain-containing protein	NA	NA	NA	NA
WP_152501500.1\|3165354_3166062_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_152501501.1\|3166079_3167744_-	SPOR domain-containing protein	B6DZZ7	Stx2-converting_phage	5.8e-27	33.7
WP_152501502.1\|3168331_3168664_+	TIGR01841 family phasin	NA	NA	NA	NA
WP_148587335.1\|3169070_3169403_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.3e-12	42.7

DBSCAN-SWA_8

3524288 : 3531280

uncultured_Mediterranean_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152501758.1\|3524288_3525182_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.7e-62	45.3
WP_152501759.1\|3525287_3526592_+	nucleotide sugar dehydrogenase	M1HYW7	Paramecium_bursaria_Chlorella_virus	1.7e-26	27.0
WP_152501760.1\|3526775_3527210_+	DUF4864 domain-containing protein	NA	NA	NA	NA
WP_152501761.1\|3527249_3528401_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.0e-102	51.6
WP_152501762.1\|3528408_3529482_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_152501763.1\|3529683_3530157_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	9.6e-36	55.0
WP_152501764.1\|3530200_3530737_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.2e-37	53.1
WP_152501765.1\|3530773_3531280_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.3e-26	38.7

DBSCAN-SWA_9

3669877 : 3681332

uncultured_Mediterranean_phage(81.82%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152501850.1\|3669877_3670216_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	6.2e-13	41.0
WP_152501851.1\|3670457_3671330_+	DUF815 domain-containing protein	NA	NA	NA	NA
WP_152501852.1\|3671379_3672828_-	peptidoglycan DD-metalloendopeptidase family protein	I2E8W3	Clostridium_phage	4.4e-15	40.2
WP_152501853.1\|3673053_3673746_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.3e-22	40.6
WP_152501854.1\|3673767_3674526_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.7e-37	39.2
WP_152501855.1\|3674651_3675932_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.2e-102	47.8
WP_152501856.1\|3676001_3676796_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	7.7e-54	48.6
WP_152501857.1\|3676792_3677239_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_152501858.1\|3677280_3677505_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	4.3e-10	75.6
WP_152501859.1\|3677634_3678768_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	5.9e-31	36.8
WP_152501860.1\|3678767_3679472_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.2e-44	50.3
WP_152501861.1\|3679461_3680301_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.0e-32	33.9
WP_152501862.1\|3680312_3681332_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	6.7e-26	44.3

DBSCAN-SWA_10

5421699 : 5542502

Bacillus_virus(16.67%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152503261.1\|5421699_5422743_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-27	35.2
WP_152503262.1\|5422739_5423582_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_152503263.1\|5423661_5424606_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_152503264.1\|5424798_5425401_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_152503265.1\|5425420_5427079_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	1.0e-60	31.2
WP_152503266.1\|5427127_5428591_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_152503267.1\|5428731_5430015_+	adenylate/guanylate cyclase domain-containing protein	A0A2H4N7Z5	Lake_Baikal_phage	1.0e-15	26.9
WP_152503268.1\|5430076_5430289_-	hemin uptake protein HemP	NA	NA	NA	NA
WP_152503269.1\|5430648_5431113_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_152503270.1\|5431216_5432830_-	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_152503271.1\|5432892_5433948_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_152503272.1\|5434047_5435226_-	aminoacetone oxidase family FAD-binding enzyme	NA	NA	NA	NA
WP_152504442.1\|5435310_5435820_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_152503273.1\|5435969_5437175_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_152503274.1\|5437269_5438235_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_152503275.1\|5438249_5439122_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_152503276.1\|5439127_5439835_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-14	23.4
WP_152503277.1\|5439831_5440602_-	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	7.8e-11	27.8
WP_173006265.1\|5441314_5443345_+	EAL domain-containing protein	NA	NA	NA	NA
WP_152503278.1\|5443584_5444979_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_173006137.1\|5445021_5446011_+	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA
WP_152503280.1\|5446116_5447094_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_152503281.1\|5447090_5447312_-	hypothetical protein	NA	NA	NA	NA
WP_152503282.1\|5447491_5448109_-	FCD domain-containing protein	NA	NA	NA	NA
WP_152503283.1\|5448191_5449553_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_152503284.1\|5449584_5450667_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_152503285.1\|5450663_5452019_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_152503286.1\|5452221_5453058_+	SIS domain-containing protein	NA	NA	NA	NA
WP_152503287.1\|5453084_5454206_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_152503288.1\|5454283_5456029_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_152503289.1\|5456038_5457097_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	7.7e-25	29.9
WP_152503290.1\|5457093_5457696_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_152503291.1\|5457695_5458607_+	calcium/sodium antiporter	NA	NA	NA	NA
WP_173006138.1\|5458974_5459832_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_173006139.1\|5460018_5460639_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_152503294.1\|5460779_5462912_+	VWA domain-containing protein	NA	NA	NA	NA
WP_152503295.1\|5462908_5463556_+	rhombosortase	NA	NA	NA	NA
WP_152503296.1\|5464018_5464528_+	GrpB family protein	NA	NA	NA	NA
WP_173006140.1\|5465437_5466490_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_152499389.1\|5467544_5467934_+\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	9.7e-10	37.5
WP_152503298.1\|5468014_5468326_+\|transposase	transposase	NA	NA	NA	NA
WP_152499405.1\|5468423_5469737_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_152503299.1\|5469727_5470312_-	recombinase family protein	A0A1S6L009	Salmonella_phage	4.5e-35	44.9
WP_152503300.1\|5470421_5470706_-	DUF1467 family protein	NA	NA	NA	NA
WP_152503301.1\|5471273_5473139_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	2.9e-99	33.8
WP_152499517.1\|5474352_5475585_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_152503302.1\|5477287_5477944_-	hypothetical protein	NA	NA	NA	NA
WP_152503303.1\|5478188_5478941_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.3e-31	37.3
WP_152503304.1\|5480612_5481446_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_152499405.1\|5481543_5482857_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_173006266.1\|5483251_5483506_+	hypothetical protein	NA	NA	NA	NA
WP_152503306.1\|5483555_5483804_+	hypothetical protein	NA	NA	NA	NA
WP_173005817.1\|5485754_5485985_-\|transposase	transposase	NA	NA	NA	NA
WP_173005818.1\|5486039_5486210_+	hypothetical protein	NA	NA	NA	NA
WP_173006141.1\|5489370_5489808_-\|transposase	transposase	S5WIU1	Leptospira_phage	9.8e-19	50.0
WP_152503308.1\|5489797_5491054_+\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	7.5e-19	23.5
WP_173006142.1\|5491282_5491612_-	hypothetical protein	NA	NA	NA	NA
WP_152503309.1\|5494884_5495376_+	hypothetical protein	NA	NA	NA	NA
WP_152503310.1\|5495797_5496913_-	type III secretion system export apparatus subunit SctU	NA	NA	NA	NA
WP_152503311.1\|5496909_5497758_-	type III secretion system export apparatus subunit SctT	NA	NA	NA	NA
WP_152503312.1\|5497764_5498034_-	type III secretion system export apparatus subunit SctS	NA	NA	NA	NA
WP_152503313.1\|5498050_5498689_-	type III secretion system export apparatus subunit SctR	NA	NA	NA	NA
WP_152503314.1\|5498711_5499797_-	hypothetical protein	NA	NA	NA	NA
WP_152503315.1\|5499796_5500588_-	hypothetical protein	NA	NA	NA	NA
WP_173006143.1\|5500587_5501067_-	YscO family type III secretion system apparatus protein	NA	NA	NA	NA
WP_152503317.1\|5501063_5502446_-	type III secretion system ATPase SctN	NA	NA	NA	NA
WP_152503318.1\|5502442_5503114_-	type III secretion system stator protein SctL	NA	NA	NA	NA
WP_152503319.1\|5503110_5503866_-	hypothetical protein	NA	NA	NA	NA
WP_173006144.1\|5504056_5504809_-	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA
WP_173006145.1\|5504890_5505481_-	type III secretion system inner rod subunit SctI	NA	NA	NA	NA
WP_152503322.1\|5505611_5506067_-	hypothetical protein	NA	NA	NA	NA
WP_173006146.1\|5506229_5508374_+	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA
WP_152503323.1\|5508946_5509738_+	hypothetical protein	NA	NA	NA	NA
WP_173006147.1\|5511652_5512846_+	L-tyrosine/L-tryptophan isonitrile synthase family protein	NA	NA	NA	NA
WP_173006148.1\|5512922_5513645_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_152504445.1\|5513833_5514793_+	EamA/RhaT family transporter	NA	NA	NA	NA
WP_173006149.1\|5515435_5515591_+	hypothetical protein	NA	NA	NA	NA
WP_173006150.1\|5515903_5516062_-	hypothetical protein	NA	NA	NA	NA
WP_152503327.1\|5516182_5516680_-	hypothetical protein	NA	NA	NA	NA
WP_173006151.1\|5518025_5518445_-	hypothetical protein	NA	NA	NA	NA
WP_152503329.1\|5518774_5519401_-	LysE family transporter	NA	NA	NA	NA
WP_152503330.1\|5519540_5520473_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_152503331.1\|5520479_5521502_-	fatty acid desaturase	NA	NA	NA	NA
WP_152503332.1\|5521987_5524147_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_152503333.1\|5524640_5524826_-	hypothetical protein	NA	NA	NA	NA
WP_152503334.1\|5525629_5526121_-	CesT family type III secretion system chaperone	NA	NA	NA	NA
WP_173006152.1\|5526319_5526889_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_152503336.1\|5527135_5527501_-	hypothetical protein	NA	NA	NA	NA
WP_152503337.1\|5527504_5527885_-	hypothetical protein	NA	NA	NA	NA
WP_152503338.1\|5528229_5529975_-	hypothetical protein	NA	NA	NA	NA
WP_152503339.1\|5530087_5530486_-	hypothetical protein	NA	NA	NA	NA
WP_152503340.1\|5530897_5532259_+	hypothetical protein	NA	NA	NA	NA
WP_152503341.1\|5532773_5534138_+	hemolysin D	NA	NA	NA	NA
WP_152503342.1\|5534134_5537257_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_152503343.1\|5537428_5538244_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_152503344.1\|5538441_5540694_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_152503345.1\|5541324_5542032_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_152504446.1\|5542265_5542502_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_11

5557984 : 5626757

Paenibacillus_phage(60.0%)

integrase,transposase

attL 5598838:5598853|attR 5628615:5628630

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152499457.1\|5557984_5559071_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_152503357.1\|5559589_5560867_+	hypothetical protein	NA	NA	NA	NA
WP_152503358.1\|5560964_5562278_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_173006153.1\|5562682_5563612_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152503360.1\|5563767_5564001_+	hypothetical protein	NA	NA	NA	NA
WP_152499405.1\|5564612_5565926_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_152503361.1\|5565902_5566421_-	hypothetical protein	NA	NA	NA	NA
WP_152503362.1\|5567375_5567885_+	FecR domain-containing protein	NA	NA	NA	NA
WP_152503363.1\|5567881_5569771_+	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_173006154.1\|5570113_5571265_+	histidine kinase	NA	NA	NA	NA
WP_152503365.1\|5571526_5572258_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.2e-15	28.4
WP_152503366.1\|5572273_5572504_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152503367.1\|5572873_5573167_-	M10 family metallopeptidase C-terminal domain-containing protein	NA	NA	NA	NA
WP_173006155.1\|5573327_5573498_-	hypothetical protein	NA	NA	NA	NA
WP_152503368.1\|5573632_5574598_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_152503358.1\|5574680_5575994_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_152503298.1\|5576091_5576403_-\|transposase	transposase	NA	NA	NA	NA
WP_152503369.1\|5576483_5576813_-\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	8.2e-10	37.5
WP_152503370.1\|5578194_5578884_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_173006156.1\|5578886_5579129_+	hypothetical protein	NA	NA	NA	NA
WP_152503372.1\|5579169_5579493_+	type III secretion system needle protein	NA	NA	NA	NA
WP_152503373.1\|5579635_5581651_+	hypothetical protein	NA	NA	NA	NA
WP_152503374.1\|5581695_5584068_+	type II secretion system protein GspD	NA	NA	NA	NA
WP_173006157.1\|5584436_5584970_+	hypothetical protein	NA	NA	NA	NA
WP_173006158.1\|5585064_5585448_+	CesT family type III secretion system chaperone	NA	NA	NA	NA
WP_152503376.1\|5586240_5586489_+	hypothetical protein	NA	NA	NA	NA
WP_152503377.1\|5588597_5589683_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152504448.1\|5589974_5590220_+	hypothetical protein	NA	NA	NA	NA
WP_152499389.1\|5591711_5592101_-\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	9.7e-10	37.5
WP_173006159.1\|5592902_5593268_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_152503379.1\|5596098_5596569_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_173006160.1\|5596694_5597222_-	hypothetical protein	NA	NA	NA	NA
WP_173006161.1\|5597631_5598120_-	hypothetical protein	NA	NA	NA	NA
WP_152503382.1\|5598423_5598897_-	hypothetical protein	NA	NA	NA	NA
5598838:5598853	attL	NA	NA	NA	NA
WP_152503383.1\|5599006_5600218_-	hypothetical protein	NA	NA	NA	NA
WP_152503384.1\|5600257_5601277_-	hypothetical protein	NA	NA	NA	NA
WP_152503385.1\|5601315_5601882_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_152503298.1\|5603929_5604241_-\|transposase	transposase	NA	NA	NA	NA
WP_173006162.1\|5604256_5604472_-	hypothetical protein	NA	NA	NA	NA
WP_152503388.1\|5605539_5606343_+	hypothetical protein	NA	NA	NA	NA
WP_152503389.1\|5606348_5607158_+	hypothetical protein	NA	NA	NA	NA
WP_152499517.1\|5607900_5609133_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_152503390.1\|5611105_5612419_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_152503391.1\|5612672_5612891_-	hypothetical protein	NA	NA	NA	NA
WP_152503392.1\|5613307_5614478_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_152503368.1\|5615787_5616753_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_152503393.1\|5618777_5619815_-\|transposase	IS481 family transposase	A0A077SLK2	Escherichia_phage	1.1e-148	72.5
WP_152503306.1\|5621738_5621987_-	hypothetical protein	NA	NA	NA	NA
WP_173006266.1\|5622036_5622291_-	hypothetical protein	NA	NA	NA	NA
WP_152503394.1\|5622913_5623552_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_152499389.1\|5624228_5624618_-\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	9.7e-10	37.5
WP_152503395.1\|5624853_5625213_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_152503396.1\|5625458_5626757_+\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
5628615:5628630	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP045354.1|WP_152499516.1|752171_752567_-|antirestriction-protein-ArdA

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP045354.1|WP_152499516.1|752171_752567_-|antirestriction-protein-ArdA

752171_752567_-

131 aa aa

695385-754149

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP045354_1	Orphan	1.1\|645688\|52\|NZ_CP045354\|CRISPRCasFinder	645688-645739	52	747263-747212
NZ_CP045354_1	Orphan	1.2\|645778\|52\|NZ_CP045354\|CRISPRCasFinder	645778-645829	52	747173-747122
NZ_CP045354_1	Orphan	1.3\|645868\|52\|NZ_CP045354\|CRISPRCasFinder	645868-645919	52	747083-747032
NZ_CP045354_1	Orphan	1.4\|645958\|52\|NZ_CP045354\|CRISPRCasFinder	645958-646009	52	746993-746942
NZ_CP045354_1	Orphan	1.5\|646048\|52\|NZ_CP045354\|CRISPRCasFinder	646048-646099	52	746903-746852
NZ_CP045354_1	Orphan	1.6\|646138\|52\|NZ_CP045354\|CRISPRCasFinder	646138-646189	52	746813-746762

1. spacer 1.1|645688|52|NZ_CP045354|CRISPRCasFinder matches to NZ_CP045354 position: 747263-747212, mismatch: 0

gcctcacaccaccggccttaagccaacgagcttcattagaaagctcttcaag	CRISPR spacer
gcctcacaccaccggccttaagccaacgagcttcattagaaagctcttcaag	Protospacer
****************************************************

2. spacer 1.2|645778|52|NZ_CP045354|CRISPRCasFinder matches to NZ_CP045354 position: 747173-747122, mismatch: 0

gcccgatagtcgcgtaatcaagacaattaagtacatcaacaagctctttgaa	CRISPR spacer
gcccgatagtcgcgtaatcaagacaattaagtacatcaacaagctctttgaa	Protospacer
****************************************************

3. spacer 1.3|645868|52|NZ_CP045354|CRISPRCasFinder matches to NZ_CP045354 position: 747083-747032, mismatch: 0

accccacagccgcgtcattaaacatttcaactacaacaacaagctctttgaa	CRISPR spacer
accccacagccgcgtcattaaacatttcaactacaacaacaagctctttgaa	Protospacer
****************************************************

4. spacer 1.4|645958|52|NZ_CP045354|CRISPRCasFinder matches to NZ_CP045354 position: 746993-746942, mismatch: 0

gccccacagccgcgtcattaaacatttcaactacaacaacaagctctttgaa	CRISPR spacer
gccccacagccgcgtcattaaacatttcaactacaacaacaagctctttgaa	Protospacer
****************************************************

5. spacer 1.5|646048|52|NZ_CP045354|CRISPRCasFinder matches to NZ_CP045354 position: 746903-746852, mismatch: 0

gccccatgccttcaccatccagcttgcaagccgccttagaaagacttttagg	CRISPR spacer
gccccatgccttcaccatccagcttgcaagccgccttagaaagacttttagg	Protospacer
****************************************************

6. spacer 1.6|646138|52|NZ_CP045354|CRISPRCasFinder matches to NZ_CP045354 position: 746813-746762, mismatch: 0

gcctcatgctctcggcatcaagtgtatgagccagtttataacatcttctcat	CRISPR spacer
gcctcatgctctcggcatcaagtgtatgagccagtttataacatcttctcat	Protospacer
****************************************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045354

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information