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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045359 Pseudomonas sp. THAF42 chromosome, complete genome 3 crisprs csa3,DEDDh,cas3,DinG,WYL,RT 0 1 3 0

Results visualization

1. NZ_CP045359
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045359_1 1758583-1758922 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045359_2 4087886-4087986 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045359_3 4769056-4769170 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045359_1 1.3|1758785|29|NZ_CP045359|CRT 1758785-1758813 29 NZ_CP021765 Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence 1484523-1484551 4 0.862
NZ_CP045359_1 1.3|1758785|29|NZ_CP045359|CRT 1758785-1758813 29 NC_019367 Paracoccus marcusii plasmid pMARC5, complete sequence 28287-28315 5 0.828
NZ_CP045359_1 1.3|1758785|29|NZ_CP045359|CRT 1758785-1758813 29 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 2289320-2289348 6 0.793
NZ_CP045359_1 1.3|1758785|29|NZ_CP045359|CRT 1758785-1758813 29 NC_023283 Streptomyces sp. FR1 plasmid pFRL3, complete sequence 154908-154936 7 0.759
NZ_CP045359_1 1.3|1758785|29|NZ_CP045359|CRT 1758785-1758813 29 NC_023284 Streptomyces sp. F2 plasmid pFRL4, complete sequence 191536-191564 7 0.759

1. spacer 1.3|1758785|29|NZ_CP045359|CRT matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.862

ggcgctcttcacggggctcgcgggcctga	CRISPR spacer
cgcgctcttcgcggggctcgcggccctgc	Protospacer
 *********.************ **** 

2. spacer 1.3|1758785|29|NZ_CP045359|CRT matches to NC_019367 (Paracoccus marcusii plasmid pMARC5, complete sequence) position: , mismatch: 5, identity: 0.828

ggcgctcttcacggggctcgcgggcctga	CRISPR spacer
gttgctcttcacggaactcgcgggcctca	Protospacer
* .***********..*********** *

3. spacer 1.3|1758785|29|NZ_CP045359|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

ggcgctcttcacggggctcgcgggcctga	CRISPR spacer
gttcgtcgtcacggggctcgcggggctga	Protospacer
* .  ** **************** ****

4. spacer 1.3|1758785|29|NZ_CP045359|CRT matches to NC_023283 (Streptomyces sp. FR1 plasmid pFRL3, complete sequence) position: , mismatch: 7, identity: 0.759

ggcgctcttcacggggctcgcgggcctga	CRISPR spacer
ggcggtcttcacgggcctcgcggcggcgg	Protospacer
**** ********** *******   .*.

5. spacer 1.3|1758785|29|NZ_CP045359|CRT matches to NC_023284 (Streptomyces sp. F2 plasmid pFRL4, complete sequence) position: , mismatch: 7, identity: 0.759

ggcgctcttcacggggctcgcgggcctga	CRISPR spacer
ggcggtcttcacgggcctcgcggcggcgg	Protospacer
**** ********** *******   .*.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 33853 : 94713 58 Streptomyces_phage(16.67%) plate,tRNA,holin NA
DBSCAN-SWA_2 2486986 : 2549544 60 uncultured_Caudovirales_phage(24.0%) plate,tRNA,transposase,protease NA
DBSCAN-SWA_3 3988858 : 3997201 7 Pseudomonas_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage