CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP045389	Roseivivax sp. THAF30 chromosome, complete genome	0 crisprs	cas3,WYL,csa3,DEDDh	3
NZ_CP045391	Roseivivax sp. THAF30 plasmid pTHAF30_b, complete sequence	0 crisprs	NA	0
NZ_CP045390	Roseivivax sp. THAF30 plasmid pTHAF30_a, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

778038 : 827101

Cedratvirus(14.29%)

integrase,capsid,terminase

attL 819124:819171|attR 830295:830342

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172974929.1\|778038_779343_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_152461483.1\|779372_781457_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_152461484.1\|781487_781715_-	DNA-binding protein	NA	NA	NA	NA
WP_152461485.1\|781964_784109_+	hypothetical protein	NA	NA	NA	NA
WP_152461487.1\|784989_785634_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_152463636.1\|785759_786593_+	FAD binding domain-containing protein	NA	NA	NA	NA
WP_152461488.1\|786589_787090_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_152461489.1\|787086_789468_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_152461490.1\|789516_790569_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA
WP_152461491.1\|790640_791207_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_152461492.1\|791203_792532_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_152461493.1\|792690_793557_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_152461494.1\|793567_794425_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_152461495.1\|794428_795415_-	ribose ABC transporter permease	NA	NA	NA	NA
WP_152461496.1\|795423_796956_-	ATP-binding cassette domain-containing protein	A0A285PWH2	Cedratvirus	2.6e-13	28.4
WP_152461497.1\|797031_798078_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_152463637.1\|798120_799011_-	TIM barrel protein	NA	NA	NA	NA
WP_152461498.1\|799535_800168_+\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF93	Clostridium_phage	1.3e-06	28.3
WP_152461499.1\|800524_800806_+	hypothetical protein	NA	NA	NA	NA
WP_152461500.1\|800891_801386_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_152461501.1\|801382_801844_+	c-type cytochrome	NA	NA	NA	NA
WP_152461502.1\|801977_802250_-	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_152461503.1\|802368_803196_+	glutaredoxin	NA	NA	NA	NA
WP_152461504.1\|803741_804215_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.0e-13	44.3
WP_152463638.1\|804592_805204_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_152461505.1\|805673_806060_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_152461506.1\|806123_807638_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_152461507.1\|807659_808091_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_152461508.1\|808087_809059_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_152461509.1\|809276_810233_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	8.4e-31	33.6
WP_152461510.1\|810229_811438_+	CoA transferase	NA	NA	NA	NA
WP_152461511.1\|812079_812367_+	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_152461512.1\|812431_812920_+	GFA family protein	NA	NA	NA	NA
WP_152461513.1\|813205_813568_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_152461514.1\|813743_814796_+	hypothetical protein	NA	NA	NA	NA
WP_152461515.1\|815080_815437_-	hypothetical protein	NA	NA	NA	NA
WP_152461516.1\|815849_816164_-	hypothetical protein	NA	NA	NA	NA
WP_152461517.1\|816697_818992_-	hypothetical protein	NA	NA	NA	NA
819124:819171	attL	NA	NA	NA	NA
WP_152461518.1\|819337_820570_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1W6JPG6	Morganella_phage	1.0e-36	30.1
WP_152461519.1\|820566_821307_+	hypothetical protein	NA	NA	NA	NA
WP_152461520.1\|821375_821597_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_152461521.1\|821593_821998_+	hypothetical protein	NA	NA	NA	NA
WP_152461522.1\|821994_822213_+	hypothetical protein	NA	NA	NA	NA
WP_152463639.1\|822251_822524_+	hypothetical protein	A0A1W6JT39	Escherichia_phage	4.1e-15	44.8
WP_152461523.1\|823113_823659_+	hypothetical protein	NA	NA	NA	NA
WP_152461524.1\|823651_825184_+\|terminase	terminase	NA	NA	NA	NA
WP_152461525.1\|825174_825522_+	hypothetical protein	NA	NA	NA	NA
WP_152461526.1\|825518_825848_+	HNH endonuclease	A0A2I7SC46	Paenibacillus_phage	3.8e-07	35.5
WP_152461527.1\|825850_827101_+\|capsid	phage major capsid protein	NA	NA	NA	NA
830295:830342	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1579054 : 1586306

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152463683.1\|1579054_1580170_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	8.1e-33	38.3
WP_152462044.1\|1580316_1580994_-	HTH domain-containing protein	NA	NA	NA	NA
WP_093012425.1\|1581205_1581424_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	6.9e-05	49.1
WP_152462045.1\|1581435_1581891_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_093012431.1\|1581887_1582772_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.5e-37	37.2
WP_152462046.1\|1582768_1583611_+	DUF815 domain-containing protein	NA	NA	NA	NA
WP_152462047.1\|1583626_1584808_-	peptidoglycan DD-metalloendopeptidase family protein	G9FHH0	Rhodococcus_phage	5.2e-06	38.5
WP_152462048.1\|1584879_1585524_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.5e-28	45.1
WP_152462049.1\|1585520_1586306_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.2e-32	34.6

DBSCAN-SWA_3

2840192 : 2875763

Paracoccus_phage(18.18%)

protease,head,portal,tail,tRNA,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152462897.1\|2840192_2841266_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	6.1e-30	33.5
WP_093009352.1\|2841444_2841729_+	YrhK family protein	NA	NA	NA	NA
WP_152462898.1\|2841798_2844195_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_093009354.1\|2844260_2844710_+	YtoQ family protein	NA	NA	NA	NA
WP_093009411.1\|2844817_2845240_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_152462899.1\|2845360_2846248_+	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_152462900.1\|2846250_2846973_-	VCBS repeat-containing protein	NA	NA	NA	NA
WP_093009413.1\|2846972_2847296_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_093009414.1\|2847408_2847798_+	hypothetical protein	NA	NA	NA	NA
WP_152463740.1\|2847945_2848383_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_152462901.1\|2848444_2849995_-	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	1.4e-22	27.1
WP_152462902.1\|2850072_2850261_-	DUF2065 family protein	NA	NA	NA	NA
WP_152462903.1\|2850271_2851417_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_152462904.1\|2851416_2852580_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_152462905.1\|2852643_2854125_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_093009420.1\|2854318_2855107_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_152462906.1\|2855290_2856664_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_152462907.1\|2856724_2857681_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_152462908.1\|2857670_2858963_+	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_093009718.1\|2858959_2859214_+	hypothetical protein	NA	NA	NA	NA
WP_152462909.1\|2859102_2859705_+	E3 binding domain-containing protein	NA	NA	NA	NA
WP_172975012.1\|2859774_2860932_-	porin	NA	NA	NA	NA
WP_152462911.1\|2861033_2861852_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_152462912.1\|2861933_2862269_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_152462913.1\|2866170_2866638_-	C40 family peptidase	A0A1V0DYB6	Dinoroseobacter_phage	1.1e-28	46.4
WP_152462914.1\|2866634_2867522_-	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	2.0e-58	40.2
WP_152462915.1\|2867518_2868151_-	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	8.0e-54	47.1
WP_152462916.1\|2868161_2868815_-\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	1.7e-14	32.7
WP_152462917.1\|2868811_2869006_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_152462918.1\|2868995_2869325_-	gene transfer agent family protein	NA	NA	NA	NA
WP_093009435.1\|2869328_2869748_-\|tail	phage major tail protein, TP901-1 family	A0A1J0GVL1	Pseudoalteromonas_phage	7.8e-05	32.1
WP_152462919.1\|2869762_2870179_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_152462920.1\|2870175_2870514_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_152462921.1\|2870510_2871104_-	hypothetical protein	NA	NA	NA	NA
WP_152462922.1\|2871183_2872368_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	4.5e-66	44.5
WP_152462923.1\|2872397_2872943_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.1e-30	48.4
WP_152462924.1\|2872966_2873194_-	hypothetical protein	NA	NA	NA	NA
WP_152462925.1\|2873186_2874371_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.8e-59	36.9
WP_152463741.1\|2874521_2875763_-	ATP-binding protein	A0A0K1LMR9	Caulobacter_phage	2.3e-73	41.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage