CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP045384	Ruegeria sp. THAF33 chromosome, complete genome	0 crisprs	csa3,cas3,DEDDh,WYL	3
NZ_CP045385	Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence	0 crisprs	NA	0
NZ_CP045388	Ruegeria sp. THAF33 plasmid pTHAF33_d, complete sequence	0 crisprs	NA	0
NZ_CP045387	Ruegeria sp. THAF33 plasmid pTHAF33_c, complete sequence	0 crisprs	NA	0
NZ_CP045386	Ruegeria sp. THAF33 plasmid pTHAF33_b, complete sequence	0 crisprs	csa3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

354081 : 412172

Acidithiobacillus_phage(15.38%)

tRNA,terminase,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152456926.1\|354081_354975_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.0e-70	50.4
WP_152456927.1\|355018_356635_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_152456928.1\|356702_356948_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_152456929.1\|356944_357370_-	ribonuclease P protein component	NA	NA	NA	NA
WP_005980833.1\|357395_357530_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_152456930.1\|357825_358557_+	VTT domain-containing protein	NA	NA	NA	NA
WP_152456931.1\|358560_359979_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_172978519.1\|360045_361380_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_152456933.1\|361871_363542_-	recombinase family protein	K4ICM1	Acidithiobacillus_phage	4.2e-86	46.8
WP_152456934.1\|363538_363943_-	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	6.3e-12	34.8
WP_152456935.1\|363939_364170_-	DUF3489 domain-containing protein	NA	NA	NA	NA
WP_152459812.1\|364684_366019_+	ParB N-terminal domain-containing protein	A0A2H4JGF1	uncultured_Caudovirales_phage	1.9e-73	38.1
WP_172978451.1\|366011_366488_+	hypothetical protein	NA	NA	NA	NA
WP_172978452.1\|366474_367956_+\|terminase	phage terminase large subunit	A0A2K9V3I6	Faecalibacterium_phage	4.8e-41	29.2
WP_152456937.1\|368793_369291_-	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	1.6e-36	48.9
WP_172978453.1\|369358_370891_+	DNA cytosine methyltransferase	G3CB01	Aeropyrum_pernix_spindle-shaped_virus	1.5e-21	29.2
WP_152456939.1\|370942_372262_-	AAA family ATPase	NA	NA	NA	NA
WP_152456940.1\|372468_373628_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	6.6e-46	42.4
WP_152456941.1\|373738_375544_-	AIPR family protein	NA	NA	NA	NA
WP_152456942.1\|375545_376550_-	PD-(D/E)XK motif protein	NA	NA	NA	NA
WP_152456943.1\|376533_379422_-	endonuclease	NA	NA	NA	NA
WP_152456944.1\|379418_380921_-	ATP-binding protein	NA	NA	NA	NA
WP_152459813.1\|380917_382015_-	sigma-70 family RNA polymerase sigma factor	F4YCU2	Synechococcus_phage	4.2e-18	29.8
WP_152456945.1\|383846_384707_-	WYL domain-containing protein	NA	NA	NA	NA
WP_172978454.1\|385061_386207_-	GAF domain-containing protein	NA	NA	NA	NA
WP_152456947.1\|387523_389203_+	DUF4071 domain-containing protein	NA	NA	NA	NA
WP_152456948.1\|389267_390635_+	hypothetical protein	NA	NA	NA	NA
WP_152456949.1\|390636_391188_+	DUF882 domain-containing protein	R9ZW03	Cellulophaga_phage	2.1e-10	38.1
WP_172978455.1\|391192_392521_+	DUF4071 domain-containing protein	NA	NA	NA	NA
WP_152456952.1\|392573_393331_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_152456954.1\|393575_394181_-	TIR domain-containing protein	NA	NA	NA	NA
WP_152456955.1\|394347_395052_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	3.5e-26	37.6
WP_152456957.1\|395181_398214_-	hypothetical protein	NA	NA	NA	NA
WP_152456958.1\|398324_399947_-	TIR domain-containing protein	NA	NA	NA	NA
WP_152456960.1\|400828_401521_-	TIR domain-containing protein	NA	NA	NA	NA
WP_152456962.1\|401872_402961_-	TIR domain-containing protein	NA	NA	NA	NA
WP_152456964.1\|403121_404081_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.1e-19	33.7
WP_172978435.1\|405260_405554_+	hypothetical protein	NA	NA	NA	NA
WP_152456965.1\|405737_406145_+	hypothetical protein	NA	NA	NA	NA
WP_172978456.1\|406194_408135_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_152456969.1\|408165_408984_-	hypothetical protein	NA	NA	NA	NA
WP_152456971.1\|409079_410045_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_152456972.1\|410880_411270_-	hypothetical protein	NA	NA	NA	NA
WP_152456974.1\|411467_412172_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	4.6e-26	37.4

DBSCAN-SWA_2

1831288 : 1877902

Paracoccus_phage(26.67%)

tRNA,head,portal,capsid,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152458279.1\|1831288_1832671_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_152458280.1\|1832667_1833426_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_152458281.1\|1833450_1834521_+	agmatine deiminase family protein	NA	NA	NA	NA
WP_152458282.1\|1834539_1835661_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_152458283.1\|1835732_1836938_-	DUF4115 domain-containing protein	NA	NA	NA	NA
WP_152458284.1\|1837067_1838291_-	5-aminolevulinate synthase	NA	NA	NA	NA
WP_152458285.1\|1838616_1840002_+	dipeptidase	NA	NA	NA	NA
WP_152458286.1\|1840155_1841550_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_152458287.1\|1841763_1842198_+	hypothetical protein	NA	NA	NA	NA
WP_152458288.1\|1842242_1842818_-	DUF924 family protein	A0A1V0SIY0	Klosneuvirus	1.0e-15	31.8
WP_152458289.1\|1842927_1844199_-	MFS transporter	NA	NA	NA	NA
WP_152458290.1\|1844310_1845357_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_152458291.1\|1845399_1848795_-	hypothetical protein	NA	NA	NA	NA
WP_152458292.1\|1848854_1849316_+	redoxin domain-containing protein	NA	NA	NA	NA
WP_152458293.1\|1849376_1850219_+	DUF455 family protein	NA	NA	NA	NA
WP_152458294.1\|1850393_1851725_+	peptidoglycan DD-metalloendopeptidase family protein	G9BW84	Planktothrix_phage	2.2e-24	44.4
WP_117868644.1\|1851714_1852215_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_152458295.1\|1852336_1853146_+	zinc-dependent peptidase	NA	NA	NA	NA
WP_152458296.1\|1853259_1853949_+	aquaporin Z	NA	NA	NA	NA
WP_152458297.1\|1854011_1854569_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	8.6e-44	58.2
WP_152458298.1\|1854561_1855068_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	5.6e-42	55.6
WP_152458299.1\|1855201_1856392_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_172978479.1\|1856493_1856808_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_171115419.1\|1856948_1857248_+	septum formation initiator family protein	NA	NA	NA	NA
WP_152458301.1\|1857418_1858408_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_152458302.1\|1858423_1859794_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA
WP_152458303.1\|1859808_1861107_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_171231439.1\|1861329_1861500_+	hypothetical protein	NA	NA	NA	NA
WP_152458304.1\|1861504_1862314_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_152458305.1\|1862397_1862736_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_152458306.1\|1862716_1863013_-	hypothetical protein	NA	NA	NA	NA
WP_152459875.1\|1863012_1865577_-	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0B5A7K5	Paracoccus_phage	2.3e-160	38.6
WP_152458307.1\|1867127_1867574_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	1.3e-29	48.9
WP_152458308.1\|1867570_1868458_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	8.3e-57	39.6
WP_152458309.1\|1868457_1869090_-	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	1.2e-60	52.9
WP_152458310.1\|1869105_1869768_-\|tail	phage tail tape measure protein	K7YBG2	uncultured_Mediterranean_phage	4.4e-10	39.1
WP_152458311.1\|1869754_1869964_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_152458312.1\|1869960_1870281_-	gene transfer agent family protein	NA	NA	NA	NA
WP_152458313.1\|1870285_1870699_-\|tail	phage major tail protein, TP901-1 family	A0A1J0GVL1	Pseudoalteromonas_phage	3.1e-06	31.9
WP_152458314.1\|1870719_1871133_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_152458315.1\|1871129_1871468_-\|head	phage head closure protein	NA	NA	NA	NA
WP_152458316.1\|1871464_1872064_-	hypothetical protein	NA	NA	NA	NA
WP_152458317.1\|1872234_1873413_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	1.1e-67	39.8
WP_152458318.1\|1873447_1873993_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.1e-32	52.5
WP_152458319.1\|1874019_1874238_-	hypothetical protein	NA	NA	NA	NA
WP_152458320.1\|1874230_1875391_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.9e-61	38.3
WP_152458321.1\|1875570_1876539_+	cation transporter	M1Q1N9	Streptococcus_phage	7.5e-11	28.2
WP_172978522.1\|1876558_1877902_-	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	6.9e-79	41.2

DBSCAN-SWA_3

3445133 : 3452664

Vibrio_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152459952.1\|3445133_3446162_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	1.2e-14	68.6
WP_152459785.1\|3446181_3447132_-	pyridoxal-phosphate dependent enzyme	A0A1X9I5F1	Streptococcus_phage	3.0e-36	36.1
WP_152459786.1\|3447128_3448316_-	glycine C-acetyltransferase	G9E4Q1	Emiliania_huxleyi_virus	9.8e-37	28.2
WP_152459787.1\|3448426_3448990_-	helix-turn-helix domain-containing protein	I3VYZ1	Thermoanaerobacterium_phage	4.7e-05	41.7
WP_152459788.1\|3449106_3450282_+	beta-ketothiolase BktB	NA	NA	NA	NA
WP_152459789.1\|3450378_3451908_-	2-polyprenylphenol 6-hydroxylase	A0A2P0VMP1	Tetraselmis_virus	5.0e-17	29.6
WP_152459790.1\|3451911_3452664_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	A0A097BYE1	Leuconostoc_phage	1.8e-07	27.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage