CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP045401	Halomonas sp. THAF12 plasmid pTHAF12_b, complete sequence	0 crisprs	NA	0
NZ_CP045402	Halomonas sp. THAF12 plasmid pTHAF12_c, complete sequence	0 crisprs	NA	0
NZ_CP045400	Halomonas sp. THAF12 plasmid pTHAF12_a, complete sequence	0 crisprs	NA	1
NZ_CP045399	Halomonas sp. THAF12 chromosome, complete genome	1 crisprs	DEDDh,cas3,csa3,DinG	6

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

121451 : 149074

Mycobacterium_phage(40.0%)

transposase,integrase

attL 119832:119846|attR 138187:138201

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
119832:119846	attL	NA	NA	NA	NA
WP_152478282.1\|121451_122780_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_152480119.1\|122787_125523_+\|integrase	tyrosine-type recombinase/integrase	F8J2B4	Monodon_slow_growth-associated_virus	2.7e-13	27.7
WP_152478283.1\|125524_126127_+	hypothetical protein	NA	NA	NA	NA
WP_152478284.1\|126134_126608_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_152478285.1\|127056_128136_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_152478286.1\|129358_129886_+	hypothetical protein	NA	NA	NA	NA
WP_152478287.1\|129886_130876_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_152478288.1\|130997_133316_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	3.3e-89	37.2
WP_152478289.1\|133312_134677_-	amino acid permease	NA	NA	NA	NA
WP_152478290.1\|134788_135274_-	hypothetical protein	NA	NA	NA	NA
WP_152478291.1\|135310_135649_-	cation transporter	NA	NA	NA	NA
WP_152478292.1\|135679_135883_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_152478293.1\|135928_136750_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_172977656.1\|136945_137716_-	copper resistance protein B	NA	NA	NA	NA
WP_152478294.1\|137725_139513_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
138187:138201	attR	NA	NA	NA	NA
WP_152478295.1\|139584_140916_-	ATP-binding protein	NA	NA	NA	NA
WP_152478296.1\|140896_141562_-	response regulator	W8CYM9	Bacillus_phage	5.2e-19	33.8
WP_152478297.1\|141570_142071_-	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_152478298.1\|142279_142582_+	hypothetical protein	NA	NA	NA	NA
WP_172977657.1\|142655_142808_+	hypothetical protein	NA	NA	NA	NA
WP_152478299.1\|142804_143245_+	hypothetical protein	NA	NA	NA	NA
WP_152478300.1\|144802_146056_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	4.6e-101	49.5
WP_152478300.1\|147820_149074_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	4.6e-101	49.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP045399

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045399_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045399_1

3547464-3547553

Orphan

Consensus_repeat	Method
TGCCGTGACAGGTCGGGCAGGTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045399_1

>merge|NZ_CP045399|1|3547464-3547553|CRISPRCasFinder
TGCCGTGACAGGTCGGGCAGGTCTGCTGCACGGCGAAGAAGCCCTGCTGCATGCGCACCTGGCCCATGCCGTTACAGGTCGGGCAGGTCT

>NZ_CP045399|1|1|3547464-3547553|CRISPRCasFinder
TGCCGTGACAGGTCGGGCAGGTCT	GCTGCACGGCGAAGAAGCCCTGCTGCATGCGCACCTGGCCCA
TGCCGTTACAGGTCGGGCAGGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045399.1\|WP_016854004.1\|3554644_3555136_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NZ_CP045399.1\|WP_152479898.1\|3539086_3540232_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP045399.1\|WP_026068307.1\|3553296_3553758_+\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|367908
NZ_CP045399.1\|WP_016854003.1\|3554071_3554515_-\|type-II-toxin-antitoxin-system-RatA-family-toxin	unknown	unknown	gnl\|CDD\|176855
NZ_CP045399.1\|WP_152479910.1\|3557182_3557839_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045399.1\|WP_152479903.1\|3544011_3545100_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|223682
NZ_CP045399.1\|WP_152479904.1\|3545093_3545843_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP045399.1\|WP_016854000.1\|3552816_3553263_-\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236527
NZ_CP045399.1\|WP_016853986.1\|3535334_3535811_-\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NZ_CP045399.1\|WP_152479909.1\|3553770_3554070_-\|RnfH-family-protein	unknown	unknown	gnl\|CDD\|377094
NZ_CP045399.1\|WP_152479899.1\|3540516_3541323_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP045399.1\|WP_152479901.1\|3542326_3542608_-\|DUF2218-domain-containing-protein	unknown	unknown	gnl\|CDD\|378337
NZ_CP045399.1\|WP_152479905.1\|3545820_3546714_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP045399.1\|WP_152479902.1\|3542882_3544010_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238559
NZ_CP045399.1\|WP_152479907.1\|3548136_3550065_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP045399.1\|WP_016853998.1\|3550186_3550816_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|172640
NZ_CP045399.1\|WP_152479908.1\|3551049_3552723_+\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP045399.1\|WP_152479897.1\|3535807_3539038_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP045399.1\|WP_016854005.1\|3555840_3557067_+\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_CP045399.1\|WP_152479900.1\|3541394_3542288_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|307170

Protein	Function_ID	Function_description	E-value
NZ_CP045399.1\|WP_016854004.1\|3554644_3555136_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	2.25935e-85
NZ_CP045399.1\|WP_152479898.1\|3539086_3540232_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP045399.1\|WP_026068307.1\|3553296_3553758_+\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|367908	pfam04355, SmpA_OmlA, SmpA / OmlA family. Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).	2.52304e-27
NZ_CP045399.1\|WP_016854003.1\|3554071_3554515_-\|type-II-toxin-antitoxin-system-RatA-family-toxin	gnl\|CDD\|176855	cd07813, COQ10p_like, Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	4.22656e-70
NZ_CP045399.1\|WP_152479903.1\|3544011_3545100_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	1.75188e-73
NZ_CP045399.1\|WP_152479904.1\|3545093_3545843_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.70973e-81
NZ_CP045399.1\|WP_016854000.1\|3552816_3553263_-\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|236527	PRK09462, fur, ferric uptake regulator; Provisional.	5.04173e-65
NZ_CP045399.1\|WP_016853986.1\|3535334_3535811_-\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	3.25317e-84
NZ_CP045399.1\|WP_152479909.1\|3553770_3554070_-\|RnfH-family-protein	gnl\|CDD\|377094	pfam03658, Ub-RnfH, RnfH family Ubiquitin. A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation.	3.86801e-30
NZ_CP045399.1\|WP_152479899.1\|3540516_3541323_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	1.22968e-134
NZ_CP045399.1\|WP_152479901.1\|3542326_3542608_-\|DUF2218-domain-containing-protein	gnl\|CDD\|378337	pfam09981, DUF2218, Uncharacterized protein conserved in bacteria (DUF2218). This domain, found in various hypothetical bacterial proteins, has no known function.	2.89766e-38
NZ_CP045399.1\|WP_152479905.1\|3545820_3546714_-\|EamA-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.3361e-10
NZ_CP045399.1\|WP_152479902.1\|3542882_3544010_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238559	cd01139, TroA_f, Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	3.46448e-166
NZ_CP045399.1\|WP_152479907.1\|3548136_3550065_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP045399.1\|WP_016853998.1\|3550186_3550816_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|172640	PRK14151, PRK14151, heat shock protein GrpE; Provisional.	5.26578e-62
NZ_CP045399.1\|WP_152479908.1\|3551049_3552723_+\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NZ_CP045399.1\|WP_152479897.1\|3535807_3539038_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP045399.1\|WP_016854005.1\|3555840_3557067_+\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	1.62913e-75
NZ_CP045399.1\|WP_152479900.1\|3541394_3542288_-\|EamA-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	0.00204436

>NZ_CP045399.1|WP_152479905.1|3545820_3546714_-|EamA-family-transporter
MDNVTDRPLAGIVLRLMSGILFTGMMVCVKAVSDAVPLGQTVFFRSAFALLPIVIFMTWRREFPGALVTRRPLGHLVRSGLGAAAMFASFAAVARLPVAEATLLAQLSPVAMAVGGVLLLGERFTLHRAAAFALVLAGVAALVVPDLGESRGQVMGYGLGVLAALLTAGALVTVRRISRTETAASIAFYFVLVTALAGLATLPLGWVAVSGQTLALLVLAGLFGGAAHICMTLALRYAEVSRLAPFEYVALIWPVLADLAIFGLAPSSGFLVALPLVLGGAALAALEGRRLRRPLRQ
>NZ_CP045399.1|WP_152479904.1|3545093_3545843_+|ATP-binding-cassette-domain-containing-protein
MVTLTLDGLSARYGRRRILSEVTTPPLEGGQVVAVLGPNAAGKSTLFRRIFGLLDGGGTVRLEGATSERPVAYMPQDTGANAVLTVYESVLLARMQGRRLNVQSEDLAEVDRALEALGIAALGERDIGDLSGGQRQMVSAAQALVQNPEVLLLDEPTSALDLHRQIQLLSILRRLAKERGMLVIAALHDLGHALRFTDQALVLRHGELIACGPTEEVVTPELLHRVYRVTARIERCSRGRPQLIVEEAV
>NZ_CP045399.1|WP_152479903.1|3544011_3545100_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MPAGTNASTAPRAGSAAGAGRDAYRALVVRRQLILAALSLALFASLCVDLALGPARFGLGEVIAALFTPDDVSQQARVILWEIRMPVALMALTVGASLSVAGAQMQTILSNPLASPFTLGISAGASFGAALALAFGVVLVPAAVDYMVPINAFVMAMLTAFAIHALSMRRGVTIETIVLLGIAMVFIFNALMALIQFFASQQAVSAVVFWTMGSLTKATWPKLWIALGVLAVVMPLLARHGWALTAMRLGDAKAESLGVRPRALRLEVLVLVSLLAAIAVAFVGTIGFIGLVGPHIARLLLGEDQRFFLPGAALCGALILSIGSLLSKVLIPGTVIPIGIITSLVGIPFFLFLVLSNKKASW
>NZ_CP045399.1|WP_152479902.1|3542882_3544010_+|ABC-transporter-substrate-binding-protein
MPSPLLKAVAGTALALGSTAALAEEITVTDVAGREVTVDAPVDRVILGEGRQIYLLGALQPENPFEHVVGWREDFSQADPDNYARYAARFPALKDIPTFGGFKDGTFDVEQAAALTPDVVLMNLEAKAATEDAAYDDKLAQLGIPIVYVDFREDPLAHTTPSMRLMGELLGEEAAAEAFIDFSEAQMARVTETIAAADPERPRVLIDRAGGYSEECCMSFGPGNFGEYVELAGGSNIADGIIPNTFGTLNPEQILAADPQQVVVTGGNWDAYVPDGAWVGVGPGADMAAARAKLEGLTERTAMTGIAAVDNDDFHAIWHQFYNSPYYFVAVQRLAKWFHPELFADLDPEATLQTLHERFLPVDYAPGYWVSLKDD
>NZ_CP045399.1|WP_152479901.1|3542326_3542608_-|DUF2218-domain-containing-protein
MPISRAEIVTESGDKLINRLCKHWAHKLEVEHDEHQGRVTFDVGSCLMTSEPGRLHVAVEALDEEGLDRLEGVVASHLERMAGKEPLEIVWEN
>NZ_CP045399.1|WP_152479900.1|3541394_3542288_-|EamA-family-transporter
MLAWALLVGLSFPLVKQLGELPPLSLTALRFVIACLGLWALVRRAPQAWPERRAWPWFAAMGACLAGFFGAMFWAAHHATALSMSTLHVSVPLLAYGMGLAAGVERLAWRLPAILALGALGALGLAAAEAWQRGGAWRFGVGEAVFFLGCLCSALYPVLSRRGLVSGRLPASAAVRTFWSLALGGVLVGALGVALEPVARLATMSGRDALLIVYLGLGSSALTFWLMQRATAVLGPASITAYGYLVPFVSMLWLFVETPSRLGWAWLPGGVLVVLAIGLLLIRGDGGDASGEGARRG
>NZ_CP045399.1|WP_152479899.1|3540516_3541323_-|4-hydroxy-tetrahydrodipicolinate-reductase
MTRIAIVGVAGRMGRTLVNAVQQDAEATLAGGIVEPGSSLVGADLGELSGQGKLGVAAVDSLARIVDDFDVLIDFTAPQVTLANLAFCAEHGKRIVIGTTGLSDDELAELDGYGDRVPMVFAPNMSVGVNLTLKLLETAARALGDEGYDIEVIESHHRHKVDAPSGTALKMGEVMAEALERPLKEYGVFERVGQCGPRTDKEIGFATVRAGDIVGEHTVMFATEGERIEITHKASSRMTFAKGAVRASRWVSERPAGRYDMQDVIGLN
>NZ_CP045399.1|WP_152479898.1|3539086_3540232_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MNKPAILALEDGSVFHGTAIGADGQTSGEVVFNTAMTGYQEILTDPSYTRQIVTLTYPHIGNTGINPEDVESGAIAAAGLVIRDLPLLASNFRSEQSLSDYLAGQNVLGIADIDTRRLTRILRDKGAQNGAILAGADAEGEDAEARALAAANAFPGLKGMDLAKVVSCQSAYEWSEGEWALGAGYADAAEGERPFHVVAYDYGVKRNILRMLASRGCRLTVVPAQTPASEVMALNPDGVFLSNGPGDPEPCEYAIAAIRELLETELPIFGICLGHQLLALASGATSEKMKFGHHGANHPVQDLDTGHVMITSQNHGFAADEASLPETLRATHRSLFDGTLQGIERTDRPAFSFQGHPEASPGPRDVAPLFDRFIEMMKAKR
>NZ_CP045399.1|WP_152479897.1|3535807_3539038_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIQSILIIGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWQAVEKIIEAEKPDAVLPTMGGQTALNCALDLDKHGVLAKHGVEMIGANADAINMAEDRDLFDQAMKRIGLECPKAKVAHTMDEAWGIQGELGFPVIIRPSYTMGGSGGGVAYNKEEFEEICTRGFELSNNHELLIDESLLGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQNMRDASLAVLREIGVETGGSNVQFGVDPKTGRVVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELSNDITGGRTPASFEPSIDYVVTKIPRFTFEKFPQANDRLTTQMKSVGEVMAIGRTFQESLQKALRGLETGNDGLDPKITRFTDEAMAQIKGELQAAGADRIFYVADAMRSGMSVEDVFALTNIDRWFLVQLEDLILAEQALAKRSLSELSARELFGLKRKGFSDARLAALLGVAEKEFRKTRQKAGIRPVYKRVDTCAAEFASDTAYMYSTYEEECEAEVSDKQKIMVLGGGPNRIGQGIEFDYCCVHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIADKEQPAGVIVQFGGQTPLKLARELEAAGVPIIGTTPDAIDRAEDRERFQTMIDKLGLKQPPNATARSFDEAFAKAEAIGYPLVVRPSYVLGGRAMEIVYDASELENYMTHAVKVSNDSPVLLDHFLNAAIEVDIDAVSDGRQVVIGGIMQHIEQAGVHSGDSACALPPYSLPADVQDEMRDQVKRMAVELGVNGLMNVQLAWQDGEIYVIEVNPRASRTVPFVSKCIGTSLAQVAARCMAGISLVDQGFVAEIVPTTYSVKEAVFPFNKFPGVDPILSPEMKSTGEVMGSGETFAEAFYKAQLGAGEAIPSLSGERKAFLSVREPDKAGVIEVARSLLTLGFTLCATRGTAAALQAADLPVEIVNKVYEGRPHIVDLLKNDEIAYIVNTTEGRQAINDSSVIRRTALARKVPYATTLAGAKAVCLALEYGNAITVRRLQEQHAGVSQ
>NZ_CP045399.1|WP_016853986.1|3535334_3535811_-|transcription-elongation-factor-GreA
MNKVPMTVVGEQRLRDELEHLKSEARPNVIAAIAEAREHGDLKENAEYHAAREQQGFIEGRIQEIEGKLSNAQVIDVTQLPQTGKVIFGVTVGLMNLDTDEEVAYRIVGEDEADIKAGQISVTSPIARALIGKEEGEVVLVRTPGGDVEYEISSVEHL
>NZ_CP045399.1|WP_152479907.1|3548136_3550065_-|molecular-chaperone-DnaK
MGRIIGIDLGTTNSCVAVLDGDSPKVIENAEGARTTPSIIAYTDDGETLVGQAAKRQAVTNPQNTLFAIKRLIGRRFADDVVQKDIKMVPYTIAEADNGDAWVEVKGNKLAPPQVSAEVLKKMKKTAEDYLGESVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYGMDKSRGDKTIAVYDLGGGTFDISIIEVADVDGETQFEVLATNGDTFLGGEDFDLALINYLVDQFKADSGIDLSGDNLAMQRLKEAAEKAKIELSSAQQTEVNLPYITADNTGPKHLNVKVTRAKLESLVEELVTRSLAPCKTALADAGLSASEIDDVILVGGQTRMPMVQSKVAEFFGKDARKDVNPDEAVAVGAAIQGGVLGGDVKDVLLLDVTPLTLGIETLGGVMTPLIEKNTTIPTKKTQTFSTADDNQTAVTIHVLQGERKQSSGNKSLGRFDLADIPPAPRGVPQIEVAFDLDANGILNVSAKDKATGKEQSIVIKASSGLSDEEIDQMVQDAEAHADEDKKFEELVQLRNQADGMVHAARKTLEEAGDKATDEEKQAIESAASELEEAVKGDDQEDIQAKLDKLTEASGNLAQKMYAEQGEAAQGADAAGEAGAKQEDDVVDAEYEEVNDDQKKQ
>NZ_CP045399.1|WP_016853998.1|3550186_3550816_-|nucleotide-exchange-factor-GrpE
MAKDPQTPLDDELARQQDEADTQTQVEPEPVEGELEGAAEAAAEDAEAASDNPEAEMLAAKVEELEQALEEAKDQSMRTAAEAQNVRRRAEQEAEKARKFALEKFVKELLPVVDSLEKALEAMGEDATEAHREGVSMTLKMQIDVLNKFGVEQVEPSGEPFDPQYHEAMAMVPNPELEPNTVMDVMQKGYLLNGRLVRPAMVVVSQAAG
>NZ_CP045399.1|WP_152479908.1|3551049_3552723_+|DNA-repair-protein-RecN
MLTELAIRDFAIVDHLELELGGGMTAITGETGAGKSILLGALGLCLGERADAGSVRHGAERADLSARFDIAALPAAREWLAGRELPEDDCLLRRVVTRGGRSKAWINGQPATVADLKALGGHLIEIHGQHAHQALLGEETHLRLLDDFAGHDEAVAALGETFREWREAKRRLKRLAEDGDELRARRQLLRYQVEELDQLALADDELTGLETEQEELAHAEERLREAQFAATCCDGEEGGALPLLQQAVNHLSALPGSDRGALAEALTMLSDACIQVEEAGRELNHFAAGVELDPERLAWVEERLGEVHRIARKHHVSPEELTELHQRLAAELAELEDGGDDLEALAAEVDALEARWREQAEAVSATRRAAAARFGTAVQDQLAFLAMGKARFEVEVSEREAPAPEGLDRVRFLISANPGQPARPLAKVASGGELSRVSLAIQVVAAQHSTIPSLVFDEVDVGVSGATAEIVGQLLRRLGGNGQVMTVTHLPQVAAQAHQHLHIAKQAEDDTTLTRMALLDEAGRVGELARMLGGMTLTDQTLAHAREMLDASQRARH
>NZ_CP045399.1|WP_016854000.1|3552816_3553263_-|ferric-iron-uptake-transcriptional-regulator
MADQNHELRKAGLKVTLPRVKILHILENATNQHHLSAEDVYKTLLDSGEDVGLATVYRVLTQFESAGLVTRHNFDGGHAVFELTQEEHHDHMVCLDSGEIVEFFDETIERRQQEIAEENGYELVDHALVLYVRPKGSKATRQELNLKK
>NZ_CP045399.1|WP_026068307.1|3553296_3553758_+|outer-membrane-protein-assembly-factor-BamE
MIDRNHDSEERPQMQKLSRIVTLSVALTLVSGCSYFGVYKRDLAQGNLVTPAMTEQLHAGMTRQQVIDLMGSPLLEAPFDANQWDYVYRLDEAYGDIEQRRLTLTFEGNRLASVEHEGDFSQPPALISKQGIGPSGEADGSRGNLFNVVPNEE
>NZ_CP045399.1|WP_152479909.1|3553770_3554070_-|RnfH-family-protein
MLRVEVAFALPQRQRIVELTVPEGTTAREAVARAGLEALFPEVSAETFREADLGIFGKALRDPEARVLEEGDRVEVYRPLELDPKAARAARAARASRSS
>NZ_CP045399.1|WP_016854003.1|3554071_3554515_-|type-II-toxin-antitoxin-system-RatA-family-toxin
MPTVNRSALVRHTPQEMFDLVNDFERYPEFLPGCRRARLIERDDAHLVGEMTLGRAGIEQSFTTRNDLHEPDRIELSLVDGPFKRLRGRWQFLPMGDGACKVSLEMEFEFANRLLGMAFGKLFQQVAGQLVDSFTRRADDLYGRGRY
>NZ_CP045399.1|WP_016854004.1|3554644_3555136_+|SsrA-binding-protein-SmpB
MASNKGKGKGPGSNAIALNKKARFEYHINETFEAGLSLAGWEVKSLRAGKAQLTDTYILVKNGEAWLLGSHVTPLNTTSTHEVADPTRTRKLLLHKKEIARIFSRTQDKGHTCVPLKLYWKGNKVKCELALVSGKKLHDKRATEKDRDWQRQKGRIMREQNRG
>NZ_CP045399.1|WP_016854005.1|3555840_3557067_+|integrase-arm-type-DNA-binding-domain-containing-protein
MSRQFNKLSATAVKMAKPRDKAFKMADGGGLYLEVSPSGSKYWRLKYRHAGKEKRLAIGVYPDTSLVAAREARDEAKRQLAQGIDPSAAKRIARQQGEEAAANTFMAVAIEWLEKVHQHNVVPAHYQRNKRRLERDAFPSIGKRPISEITPPELLGCLRRIEERGHIETAHRVKTLCGQVFRYGISTGRVERDPTPDLRGALRPHKTKHYAAVTDPKEVVGLLRAIEGYGGQPVTIAALKLAPLVFTRPGELRQARWSDIDLEEATWTFHASKTGQAHIVPLSTQAVAILHYLHGLTGRAEYVFPGVRSSKRPMSNNTIKAALDQMGFKGKMTAHGFRAMARTILAERLNYPEHYIEQQLAHAVKDSNGRAYNRTSHLEQRREMLQSWANYLDALREGADSVAPIRSD
>NZ_CP045399.1|WP_152479910.1|3557182_3557839_+|hypothetical-protein
MPNDDQRLGLKVPEQHTSTVPQLRLVNSEGDMLNGKDLLNQMIDELQKVLASSDDSTSTAAGYATDMCMEMVRKVQAQVSKEELAPMSKGHFLLALGYLYGKLTMPDSRDYKELYRHYISNEERQIPLRKVGAERERGRQWIKNCARQVWEQDHAKELRIGEVVKRVLDTVRKEVKRQQNQGNEGPRRYWPSSAPKIRELIREVAPDYAVKPGRPPRK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

893055 : 920678

Mycobacterium_phage(66.67%)

transposase,integrase

attL 886966:886981|attR 927457:927472

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
886966:886981	attL	NA	NA	NA	NA
WP_152478282.1\|893055_894384_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_152480119.1\|894391_897127_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_152478283.1\|897128_897731_+	hypothetical protein	NA	NA	NA	NA
WP_152478284.1\|897738_898212_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_152478285.1\|898660_899740_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_152478286.1\|900962_901490_+	hypothetical protein	NA	NA	NA	NA
WP_152478287.1\|901490_902480_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_152478288.1\|902601_904920_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	3.3e-89	37.2
WP_152478289.1\|904916_906281_-	amino acid permease	NA	NA	NA	NA
WP_152478290.1\|906392_906878_-	hypothetical protein	NA	NA	NA	NA
WP_152478291.1\|906914_907253_-	cation transporter	NA	NA	NA	NA
WP_152478292.1\|907283_907487_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_152478293.1\|907532_908354_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_172977656.1\|908549_909320_-	copper resistance protein B	NA	NA	NA	NA
WP_152478294.1\|909329_911117_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_152478295.1\|911188_912520_-	ATP-binding protein	NA	NA	NA	NA
WP_152478296.1\|912500_913166_-	response regulator	NA	NA	NA	NA
WP_152478297.1\|913174_913675_-	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_152478298.1\|913883_914186_+	hypothetical protein	NA	NA	NA	NA
WP_172977657.1\|914259_914412_+	hypothetical protein	NA	NA	NA	NA
WP_152478299.1\|914408_914849_+	hypothetical protein	NA	NA	NA	NA
WP_152478300.1\|916406_917660_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	4.6e-101	49.5
WP_152478300.1\|919424_920678_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	4.6e-101	49.5
927457:927472	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1244914 : 1287081

uncultured_Caudovirales_phage(36.36%)

tail,capsid,holin,terminase,head,integrase,tRNA,portal,plate

attL 1242746:1242763|attR 1291161:1291178

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1242746:1242763	attL	NA	NA	NA	NA
WP_152478484.1\|1244914_1245928_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_152478485.1\|1246067_1247096_+\|integrase	tyrosine-type recombinase/integrase	A0A2D1GMX8	Marinobacter_phage	9.3e-68	43.6
WP_052719415.1\|1247092_1247314_-	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_172977664.1\|1247307_1247601_-	hypothetical protein	NA	NA	NA	NA
WP_152478486.1\|1247597_1248362_-	hypothetical protein	NA	NA	NA	NA
WP_152478487.1\|1248358_1248745_-	hypothetical protein	NA	NA	NA	NA
WP_152478488.1\|1248734_1248956_-	TraR/DksA C4-type zinc finger protein	A0A0S2SYW7	Pseudomonas_phage	1.1e-05	42.3
WP_152478489.1\|1248948_1249164_-	hypothetical protein	NA	NA	NA	NA
WP_152478490.1\|1249181_1251482_-	replication endonuclease	R4JJS4	Burkholderia_phage	2.5e-68	35.4
WP_152478491.1\|1251481_1251727_-	hypothetical protein	NA	NA	NA	NA
WP_152478492.1\|1251726_1252146_-	hypothetical protein	NA	NA	NA	NA
WP_152478493.1\|1252199_1252589_-	hypothetical protein	NA	NA	NA	NA
WP_152478494.1\|1252607_1252853_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_152478495.1\|1252849_1253044_-	hypothetical protein	NA	NA	NA	NA
WP_152478496.1\|1253082_1253298_-	hypothetical protein	NA	NA	NA	NA
WP_152478497.1\|1253341_1253572_-	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	1.2e-12	52.9
WP_172977665.1\|1253697_1254351_+	helix-turn-helix transcriptional regulator	E5FFF8	Burkholderia_phage	1.4e-13	27.3
WP_152478499.1\|1254467_1254869_+	hypothetical protein	NA	NA	NA	NA
WP_152478500.1\|1254870_1255200_+	hypothetical protein	NA	NA	NA	NA
WP_152478501.1\|1255209_1255569_+	hypothetical protein	NA	NA	NA	NA
WP_152478502.1\|1255596_1255779_+	DUF2158 domain-containing protein	M1F284	Cronobacter_phage	9.7e-05	44.2
WP_152478503.1\|1255775_1256045_+	hypothetical protein	NA	NA	NA	NA
WP_152478504.1\|1256184_1256742_+	hypothetical protein	NA	NA	NA	NA
WP_152478505.1\|1256790_1258581_+	AAA family ATPase	NA	NA	NA	NA
WP_152478506.1\|1258638_1259163_-	hypothetical protein	NA	NA	NA	NA
WP_172977666.1\|1259164_1259683_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_152478508.1\|1259931_1260945_-	phage late control D family protein	A0A2H4JAV0	uncultured_Caudovirales_phage	4.4e-86	50.2
WP_152478509.1\|1260941_1261391_-\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	2.6e-38	64.0
WP_152478510.1\|1261405_1264132_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	8.3e-140	37.8
WP_152478511.1\|1264142_1264268_-\|tail	GpE family phage tail protein	A0A2H4JFK5	uncultured_Caudovirales_phage	3.2e-07	71.4
WP_152478512.1\|1264294_1264618_-\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	1.4e-22	54.5
WP_152478513.1\|1264691_1265204_-\|tail	phage major tail tube protein	E5FFG8	Burkholderia_phage	9.1e-40	46.5
WP_172977667.1\|1265217_1266729_-\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	5.4e-141	53.4
WP_152478514.1\|1266874_1267171_-	hypothetical protein	NA	NA	NA	NA
WP_152478515.1\|1267190_1268198_-	hypothetical protein	Q8H9N0	Vibrio_phage	3.5e-75	44.7
WP_152478516.1\|1268210_1268525_-	hypothetical protein	NA	NA	NA	NA
WP_152478517.1\|1268538_1269417_-	hypothetical protein	Q6QI97	Burkholderia_phage	2.9e-09	53.6
WP_152478518.1\|1269426_1269867_-	hypothetical protein	NA	NA	NA	NA
WP_152478519.1\|1269874_1270864_-\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	4.4e-14	42.7
WP_152478520.1\|1270853_1271735_-\|plate	baseplate J/gp47 family protein	A0A0M4REB7	Salmonella_phage	6.1e-52	44.3
WP_152478521.1\|1271731_1272070_-	GPW/gp25 family protein	A0A2H4JE52	uncultured_Caudovirales_phage	2.9e-26	54.5
WP_152480144.1\|1272066_1272633_-\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	6.3e-34	47.8
WP_152478522.1\|1272723_1273179_-	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	1.5e-33	53.0
WP_152478523.1\|1273178_1273661_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	1.6e-22	43.4
WP_152478524.1\|1273766_1274138_-	hypothetical protein	A0A1Y0SUD7	Pseudomonas_phage	7.6e-20	49.6
WP_152478525.1\|1274134_1274701_-	N-acetylmuramoyl-L-alanine amidase	A0A2P9HY81	Yersinia_phage	4.1e-57	64.2
WP_152478526.1\|1274700_1274973_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_152478527.1\|1274969_1275314_-	hypothetical protein	K4NZQ3	Burkholderia_phage	1.7e-13	45.0
WP_152478528.1\|1275322_1275535_-\|tail	tail protein X	A0A077K8R0	Ralstonia_phage	1.1e-15	62.1
WP_152478529.1\|1275608_1276079_-\|head	head completion/stabilization protein	A0A2H4JCS4	uncultured_Caudovirales_phage	6.4e-24	45.9
WP_152478530.1\|1276198_1276594_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	5.2e-35	65.6
WP_152478531.1\|1276590_1277313_-\|terminase	terminase	K4NX86	Burkholderia_phage	1.9e-51	52.9
WP_152478532.1\|1277323_1278349_-\|capsid	phage major capsid protein, P2 family	E5E3W8	Burkholderia_phage	1.6e-112	60.1
WP_152478533.1\|1278363_1279182_-\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	3.6e-54	49.4
WP_152478534.1\|1279324_1281100_+\|terminase	terminase	F1BUR2	Erwinia_phage	7.9e-208	58.5
WP_152478535.1\|1281096_1282188_+\|portal	phage portal protein	A4PE27	Ralstonia_virus	9.4e-111	56.7
WP_016856049.1\|1283000_1283321_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_172977668.1\|1283358_1283964_+	hypothetical protein	NA	NA	NA	NA
WP_016856047.1\|1283974_1284568_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152478536.1\|1284682_1285423_-	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	6.3e-42	43.7
WP_152478537.1\|1285602_1287081_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
1291161:1291178	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1763374 : 1802229

Pseudomonas_phage(29.17%)

tail,capsid,integrase,terminase

attL 1780459:1780474|attR 1803116:1803131

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152478844.1\|1763374_1764487_+	replication protein	W8EA44	Vibrio_phage	1.5e-10	42.7
WP_172977681.1\|1764483_1765857_+	replicative DNA helicase	I6S783	Marinomonas_phage	6.0e-62	33.7
WP_172977682.1\|1765869_1766178_+	hypothetical protein	NA	NA	NA	NA
WP_152478846.1\|1766174_1766474_+	hypothetical protein	NA	NA	NA	NA
WP_152480172.1\|1766524_1766935_+	recombination protein NinB	F1C5C7	Cronobacter_phage	2.0e-21	57.0
WP_152478847.1\|1766931_1767381_+	DUF968 domain-containing protein	S5MW46	Escherichia_phage	1.4e-12	55.0
WP_152478848.1\|1767377_1767626_+	hypothetical protein	NA	NA	NA	NA
WP_152478849.1\|1767625_1768093_+	hypothetical protein	NA	NA	NA	NA
WP_152478850.1\|1768089_1768704_+	hypothetical protein	NA	NA	NA	NA
WP_152478851.1\|1768894_1769461_+	lytic transglycosylase	A0A0S0N5R0	Pseudomonas_phage	1.1e-51	63.0
WP_152478852.1\|1769536_1770148_+	HNH endonuclease	A0A0H5AWE9	Pseudomonas_phage	3.2e-23	38.0
WP_152478853.1\|1770144_1770462_+	hypothetical protein	NA	NA	NA	NA
WP_152478854.1\|1770461_1771013_+	hypothetical protein	A0A1D9CA16	Salinivibrio_phage	3.4e-16	28.6
WP_152478855.1\|1771046_1771268_+	hypothetical protein	NA	NA	NA	NA
WP_172977683.1\|1771310_1771460_-	hypothetical protein	NA	NA	NA	NA
WP_152478856.1\|1771649_1771916_+	hypothetical protein	NA	NA	NA	NA
WP_152478857.1\|1771918_1772119_+	hypothetical protein	NA	NA	NA	NA
WP_152478858.1\|1772137_1772683_+\|terminase	terminase small subunit	A0A1W6JNT5	Morganella_phage	5.0e-44	57.2
WP_152478859.1\|1772682_1774137_+\|terminase	terminase	A0A2H5BHG8	Acinetobacter_phage	4.9e-155	56.4
WP_152478860.1\|1774139_1775522_+	DUF4055 domain-containing protein	A0A2H4J0H4	uncultured_Caudovirales_phage	1.6e-110	48.1
WP_152478861.1\|1775514_1776675_+\|capsid	minor capsid protein	A0A0P0IR98	Acinetobacter_phage	1.2e-60	34.1
WP_172977684.1\|1776689_1776842_+	hypothetical protein	NA	NA	NA	NA
WP_152478862.1\|1776885_1777662_+	hypothetical protein	A0A2H4J0I7	uncultured_Caudovirales_phage	9.9e-38	41.5
WP_152478863.1\|1777673_1778633_+	hypothetical protein	A0A0B5A2J4	Paracoccus_phage	5.6e-83	50.0
WP_152478864.1\|1778686_1779082_+	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	1.1e-08	38.0
WP_152478865.1\|1779085_1779397_+	hypothetical protein	A0A2I7R5A8	Vibrio_phage	6.3e-28	63.3
WP_152478866.1\|1779400_1779775_+	hypothetical protein	NA	NA	NA	NA
WP_152478867.1\|1779774_1780149_+	hypothetical protein	A0A0H5ARS2	Pseudomonas_phage	4.8e-22	46.0
WP_152478868.1\|1780150_1780558_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	1.0e-17	43.1
1780459:1780474	attL	NA	NA	NA	NA
WP_152478869.1\|1780554_1780971_+	hypothetical protein	NA	NA	NA	NA
WP_152478870.1\|1781044_1781980_+	hypothetical protein	NA	NA	NA	NA
WP_152478871.1\|1781989_1782526_+	hypothetical protein	NA	NA	NA	NA
WP_152478872.1\|1782567_1782792_+	hypothetical protein	NA	NA	NA	NA
WP_152480173.1\|1782892_1783627_-	hypothetical protein	NA	NA	NA	NA
WP_152478873.1\|1783759_1784230_-	hypothetical protein	NA	NA	NA	NA
WP_172977685.1\|1784226_1784982_-	phage antirepressor KilAC domain-containing protein	A0A1B0YZY9	Pseudomonas_phage	1.6e-45	46.7
WP_152478875.1\|1785058_1785247_-	hypothetical protein	NA	NA	NA	NA
WP_152478876.1\|1785400_1785964_+	hypothetical protein	NA	NA	NA	NA
WP_172977686.1\|1785977_1786136_+	hypothetical protein	NA	NA	NA	NA
WP_152478877.1\|1786291_1786837_+	hypothetical protein	NA	NA	NA	NA
WP_152478878.1\|1786845_1787283_+	type II toxin-antitoxin system YafO family toxin	A0A0S2SYH1	Pseudomonas_phage	1.4e-20	42.0
WP_152478879.1\|1787479_1788205_+	hypothetical protein	NA	NA	NA	NA
WP_172977687.1\|1788204_1788729_+	PIN domain-containing protein	NA	NA	NA	NA
WP_152478881.1\|1788751_1789183_+	hypothetical protein	NA	NA	NA	NA
WP_152478882.1\|1789280_1793300_+\|tail	phage tail length tape measure family protein	A0A2H4J107	uncultured_Caudovirales_phage	1.9e-63	31.9
WP_152478883.1\|1793312_1793828_+	macro domain-containing protein	A0A0F6SJ21	Sinorhizobium_phage	1.9e-16	34.6
WP_152478884.1\|1793905_1795255_+	hypothetical protein	NA	NA	NA	NA
WP_152478885.1\|1795251_1796070_+	hypothetical protein	NA	NA	NA	NA
WP_152478886.1\|1796070_1797066_+\|tail	tail fiber protein	E5FFH1	Burkholderia_phage	4.8e-21	54.1
WP_152478887.1\|1797075_1797675_+	hypothetical protein	A0A0F6WBI7	Sinorhizobium_phage	1.3e-13	56.9
WP_152478888.1\|1797688_1799578_+	hypothetical protein	NA	NA	NA	NA
WP_152478889.1\|1800250_1800535_+	hypothetical protein	NA	NA	NA	NA
WP_152478890.1\|1800734_1800914_-	hypothetical protein	NA	NA	NA	NA
WP_152478891.1\|1800966_1802229_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAT5	uncultured_Caudovirales_phage	1.4e-129	53.2
1803116:1803131	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3179983 : 3191154

Klosneuvirus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152479727.1\|3179983_3182590_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.0e-75	37.2
WP_152479728.1\|3182866_3183340_-	RecX family transcriptional regulator	NA	NA	NA	NA
WP_016853507.1\|3183343_3184402_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.0e-113	61.6
WP_152479729.1\|3184560_3185055_-	nicotinamide-nucleotide amidohydrolase family protein	B5TK85	Pseudomonas_phage	6.3e-38	61.7
WP_152479730.1\|3185376_3187959_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	7.4e-29	23.1
WP_016853504.1\|3188151_3188475_+	ferredoxin family protein	NA	NA	NA	NA
WP_152479731.1\|3188963_3190256_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	6.5e-135	60.0
WP_016853502.1\|3190302_3191154_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.0e-48	41.6

DBSCAN-SWA_5

3555840 : 3564537

Pseudomonas_phage(33.33%)

integrase

attL 3555541:3555558|attR 3571377:3571394

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3555541:3555558	attL	NA	NA	NA	NA
WP_016854005.1\|3555840_3557067_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	4.2e-115	54.1
WP_152479910.1\|3557182_3557839_+	hypothetical protein	NA	NA	NA	NA
WP_016854007.1\|3557942_3558206_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	3.0e-07	41.1
WP_152479911.1\|3558212_3559163_+	toprim domain-containing protein	A0A1B0VML8	Pseudomonas_phage	4.7e-42	44.7
WP_152479912.1\|3559152_3561084_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	3.6e-89	37.5
WP_152479913.1\|3561254_3561761_+	hypothetical protein	NA	NA	NA	NA
WP_172977730.1\|3561921_3562431_+	hypothetical protein	A0A2H4J2I6	uncultured_Caudovirales_phage	5.0e-30	44.2
WP_152479915.1\|3562557_3564537_+	N-6 DNA methylase	A0A220A2U5	Liberibacter_phage	3.9e-30	25.1
3571377:3571394	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3661112 : 3715932

Mycobacterium_phage(20.0%)

tRNA,transposase,integrase

attL 3661436:3661495|attR 3714144:3715526

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152479987.1\|3661112_3661493_+\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
3661436:3661495	attL	NA	NA	NA	NA
WP_152478300.1\|3661535_3662789_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	4.6e-101	49.5
WP_152479988.1\|3662894_3663794_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	8.0e-23	30.3
WP_152479989.1\|3664597_3664810_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152480267.1\|3665142_3665748_+	toprim domain-containing protein	A0A193GYG9	Enterobacter_phage	4.2e-28	40.6
WP_152480268.1\|3665804_3666737_+	AAA family ATPase	NA	NA	NA	NA
WP_152479990.1\|3667009_3667459_+	hypothetical protein	NA	NA	NA	NA
WP_172977733.1\|3667681_3667858_+	hypothetical protein	NA	NA	NA	NA
WP_152479991.1\|3668553_3669966_+	plasmid recombination protein	NA	NA	NA	NA
WP_152479992.1\|3671176_3672073_+	hypothetical protein	NA	NA	NA	NA
WP_152479993.1\|3672087_3672810_+	hypothetical protein	NA	NA	NA	NA
WP_152479994.1\|3673188_3673692_+	hypothetical protein	A0A0N7IRG5	Acinetobacter_phage	5.1e-19	48.6
WP_152479995.1\|3673784_3674849_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_152479996.1\|3674899_3675568_+	SOS response-associated peptidase family protein	NA	NA	NA	NA
WP_152479997.1\|3675784_3676978_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_152479998.1\|3678166_3679318_+	hypothetical protein	NA	NA	NA	NA
WP_152479999.1\|3679580_3680348_+	c-type cytochrome	NA	NA	NA	NA
WP_016855913.1\|3680444_3682502_-	DNA helicase Rep	A7KV33	Bacillus_phage	2.4e-107	36.0
WP_152480000.1\|3682498_3683023_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_152480001.1\|3683134_3683815_-	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_016855916.1\|3683906_3684674_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_016855917.1\|3684811_3685549_-	ribonuclease PH	NA	NA	NA	NA
WP_152480002.1\|3685659_3686523_+	YicC family protein	NA	NA	NA	NA
WP_152480003.1\|3686898_3688119_+\|integrase	tyrosine-type recombinase/integrase	A0A1W6JPG6	Morganella_phage	6.9e-78	42.1
WP_035414227.1\|3688180_3688366_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_035470208.1\|3688579_3689191_-	YqaJ viral recombinase family protein	A0A1B0VMB3	Pseudomonas_phage	1.9e-76	68.8
WP_035470206.1\|3689251_3689989_-	ERF family protein	Q9MC70	Pseudomonas_phage	2.9e-63	59.9
WP_035470203.1\|3690000_3690186_-	hypothetical protein	NA	NA	NA	NA
WP_035470200.1\|3690282_3691251_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	2.7e-61	43.2
WP_172977734.1\|3691398_3691713_+	hypothetical protein	NA	NA	NA	NA
WP_152480005.1\|3692489_3693182_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_152480269.1\|3693359_3693569_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152480006.1\|3693693_3695511_-	hypothetical protein	NA	NA	NA	NA
WP_152480007.1\|3695746_3698185_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.0e-68	27.8
WP_152480008.1\|3698315_3698972_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_152480009.1\|3698976_3699645_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_152480010.1\|3699733_3701140_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	9.2e-42	29.4
WP_152480011.1\|3701132_3701390_-	mercury resistance system transport protein MerF	NA	NA	NA	NA
WP_152480012.1\|3701392_3701689_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_152480013.1\|3701701_3702052_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_152480014.1\|3702125_3702560_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_152480015.1\|3702786_3703365_-	SCO family protein	NA	NA	NA	NA
WP_152480016.1\|3703375_3703840_-	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_152480017.1\|3703817_3704654_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_152480018.1\|3704948_3705932_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_152480270.1\|3706038_3707511_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_152480019.1\|3707545_3708049_-	lipoprotein signal peptidase	NA	NA	NA	NA
WP_152480020.1\|3708045_3710241_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.8e-116	38.7
WP_152480021.1\|3710307_3710787_+	MerR family DNA-binding protein	NA	NA	NA	NA
WP_172977735.1\|3710829_3712053_-	M23 family metallopeptidase	A0A292GJG6	Xanthomonas_phage	4.6e-21	43.9
WP_152480023.1\|3712094_3712766_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_152478300.1\|3712849_3714103_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	4.6e-101	49.5
WP_152478300.1\|3714678_3715932_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	4.6e-101	49.5
3714144:3715526	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045400

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP045399

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection