CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045416	Pseudomonas sp. THAF7b chromosome, complete genome	3 crisprs	WYL,DEDDh,RT,cas3,DinG,csa3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045416_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045416_1

79891-80014

Orphan

Consensus_repeat	Method
GGCGAAAGAGCTGGAGGGCAAGCTATGACCTACCCAACTCGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045416_1

>merge|NZ_CP045416|1|79891-80014|CRISPRCasFinder
GGCGAAAGAGCTGGAGGGCAAGCTATGACCTACCCAACTCGCTGTCTGTCCTGTTCAACCGGCTCTTCATTCACAAGCATGGCGAAAGAGCTGGAGGGCAAGCTATGACCTACCCGACTCGCTG

>NZ_CP045416|1|1|79891-80014|CRISPRCasFinder
GGCGAAAGAGCTGGAGGGCAAGCTATGACCTACCCAACTCGCTG	TCTGTCCTGTTCAACCGGCTCTTCATTCACAAGCAT
GGCGAAAGAGCTGGAGGGCAAGCTATGACCTACCCGACTCGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045416.1\|WP_063540313.1\|72265_73624_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP045416.1\|WP_152480601.1\|81070_81640_-\|thiol-disulfide-isomerase	unknown	unknown	unknown
NZ_CP045416.1\|WP_152480602.1\|87785_89180_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP045416.1\|WP_063540316.1\|76641_77727_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP045416.1\|WP_063540321.1\|81725_82664_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP045416.1\|WP_152480600.1\|80074_80977_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NZ_CP045416.1\|WP_102839171.1\|82674_83439_-\|DUF2059-domain-containing-protein	unknown	unknown	unknown
NZ_CP045416.1\|WP_063540325.1\|85557_86184_-\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|225632
NZ_CP045416.1\|WP_063540326.1\|86448_87444_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270392
NZ_CP045416.1\|WP_063540328.1\|89176_90982_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NZ_CP045416.1\|WP_063540310.1\|69131_69788_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP045416.1\|WP_063540312.1\|71476_72223_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP045416.1\|WP_110778575.1\|83592_84201_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NZ_CP045416.1\|WP_063540315.1\|75281_76379_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP045416.1\|WP_063540314.1\|73708_75067_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP045416.1\|WP_125867613.1\|68123_69005_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP045416.1\|WP_063540317.1\|77873_79025_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP045416.1\|WP_063540308.1\|66922_68029_-\|agmatine-deiminase	unknown	unknown	gnl\|CDD\|184135
NZ_CP045416.1\|WP_063540324.1\|84277_85558_-\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP045416.1\|WP_110778581.1\|69862_71239_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252

Protein	Function_ID	Function_description	E-value
NZ_CP045416.1\|WP_063540313.1\|72265_73624_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.58261e-155
NZ_CP045416.1\|WP_063540316.1\|76641_77727_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP045416.1\|WP_063540321.1\|81725_82664_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.84967e-41
NZ_CP045416.1\|WP_152480600.1\|80074_80977_+\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	2.45556e-117
NZ_CP045416.1\|WP_152480602.1\|87785_89180_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP045416.1\|WP_063540325.1\|85557_86184_-\|TRAP-transporter-small-permease	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	8.37707e-30
NZ_CP045416.1\|WP_063540326.1\|86448_87444_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270392	cd13674, PBP2_TRAP_SBP_like_1, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes uncharacterized periplasmic substrate-binding proteins similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.64586e-157
NZ_CP045416.1\|WP_063540328.1\|89176_90982_-\|sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	0
NZ_CP045416.1\|WP_063540310.1\|69131_69788_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.83614e-11
NZ_CP045416.1\|WP_063540312.1\|71476_72223_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	4.51152e-97
NZ_CP045416.1\|WP_110778575.1\|83592_84201_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.69856e-44
NZ_CP045416.1\|WP_063540315.1\|75281_76379_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP045416.1\|WP_063540314.1\|73708_75067_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP045416.1\|WP_125867613.1\|68123_69005_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP045416.1\|WP_063540317.1\|77873_79025_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP045416.1\|WP_063540308.1\|66922_68029_-\|agmatine-deiminase	gnl\|CDD\|184135	PRK13551, PRK13551, agmatine deiminase; Provisional.	0
NZ_CP045416.1\|WP_063540324.1\|84277_85558_-\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	1.23609e-143
NZ_CP045416.1\|WP_110778581.1\|69862_71239_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.11732e-155

>NZ_CP045416.1|WP_063540317.1|77873_79025_+|polyamine-ABC-transporter-ATP-binding-protein
MAVASSAYKKALSGESKNKQVLLKIDRVTKKFDETVAVDDVSLSIHQGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDMPPYERPINMMFQSYALFPHMTVEQNIAFGLKQDGLPKEEVEARVKEMLGLVQMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVQIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGWIAQVGSPMDIYETPASRLVCEFIGNVNLFDGELVEDMGDHAIIASPGLENPIYVGHGISTRAQDKQITYAIRPEKLLIGTELPELERPGYNWAKGVVHDIAYLGGHSVYYIKLPSGGVLQAFMANAERHVKLPTWEEEVYVYWWDDSGVVLQA
>NZ_CP045416.1|WP_063540316.1|76641_77727_+|polyamine-ABC-transporter-substrate-binding-protein
MRSTLKSLIVAAAVAGATAAQAATVHVYNWSDYIGETTLEEFERETGIKPVYDVFDSNETLEGKLLAGRSGYDVVVPSNHFLGKQIRAGAFQKLDKSKLPNWENLDPALLKQLQKNDPGNAYAAPYLWGTNGIGYNVEKVKAALGVDKIDSWAVIFEPENAAKLASCGIAFLDSADEMIPAMLNYLGLDPNSENAADYRKAEEKLLAVRPHVRYFHSSKYISDLANGNICVAAGFSGDVFQAAARAEEAGKGIEIAYAIPKEGGNLWFDMLAIPADASNVDEAHAFINYLLRPEVIAAVSDYVGYANPNLKAGELMDQEVRQDASVYPPQETLDRLYVSAELPPKVQRLMTRTWTKVKSGK
>NZ_CP045416.1|WP_063540315.1|75281_76379_+|polyamine-ABC-transporter-substrate-binding-protein
MNPFAKTLLAMTLAGTLAGAAQAQEKVLHVYNWSDYIAEDTLENFTKETGIKVVYDVFDSNEVLEAKLLAGSSGYDVVVPSNPFLAKQIKAGVFQKLDKSKLPNWENLDKDLLKALEPSDPGNQYSIPYMWGTIGIGYNVDKVKAALGDNAPVDSWDLVFKPENIEKLKSCGVAFLDSPTEMLPAALHYLGYAPDSGKADELKKAEELFMQIRPHVAYFHSSKYISDLANGNICVAIGYSGDIYQGKSRAEEAANGVNVSYKIPKEGAGSFFDMLAVPADAKNVESAHVFLNYLMKPEVMASITNYVQFPNGNAAATPLLDEAIRTDPGIYPSQDVLKKLYTFPDLDPKTQRAMTRSWTKIKSGR
>NZ_CP045416.1|WP_063540314.1|73708_75067_+|aspartate-aminotransferase-family-protein
MSDSQTLHWQALSRDHHLPPFTDYKALNAKGTRIITRGEGVYLWDSEGHKILDAMAGLWCVNLGYGREELVEAATRQMRELPYYNLFFQTAHPPAVALAKAIADIAPAGMNHVFFTGSGSEANDTVLRMVRHYWAIKGRPEKKVIIGRWNGYHGSTVAGTSLGGMKAMHEQGDFPIPGIEHIDQPYWYGEGGDMSPEEFGLRIADQLEQKILEVGEDKVAAFIAEPIQGAGGVIIPPDSYWPRIEEILARHDILLVADEVICGFGRTGEWFGSDYYGLTPDLMPIAKGLTSGYIPMGGVIVRDEVVQTLNEGGEFYHGFTYSGHPVAAAVALENIRILREEKIVERVKTKTAPYLQSRWQELVEHPLVGEARGVGLLGALELVKNKKTRERFADADVGMRCREHCFRNGLVMRAVGDTMIISPPLVISEEQIDELIGKVRLCLDATAKDVRG
>NZ_CP045416.1|WP_063540313.1|72265_73624_+|glutamine-synthetase
MSIKLDQLTGWLKERKITEVECLISDLTGIARGKISPTNKFLDEKGMRLPESVLLQTVTGDYVEDDIYYELLDPADIDMFCRPDPNAVFLVPWAIEPTAQVIHDTYDKMGNPIELSPRNILKRVLKMYADRGWQPIVAPEMEFYLTKRCEDPDLPFQPPIGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGEALHLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSVIDLNTGRNIFSNEDGSMSQLFLHHVGGLQKYIPELLPMFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSDPQNRRVENRLAGADANPYLAIAASLLCGYIGMVEQLPPSQPVKGRGYERRNLRLPLTLEAALERMETCRELEKYLSPKFITGYVAVKRAEQENYHRVISSWEREFLMLSV
>NZ_CP045416.1|WP_063540312.1|71476_72223_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRKPLIGVSACTKQLGHHSFHIAGDKYLRAAAIAGLPLVIPALDELIDPATLLENFDGLLFTGSPSNVEPHHYGGPASEPGTHHDPFRDRLTLPLIRAAVEAGIPVFGICRGFQEMNVAFGGTLHQKVHEAGPYQDHRERPEDPLDVQYGLSHALHVQPGGLLERLGLPPQIQVNSVHGQGVERLGAGLRIEALAPDGLIEAFSVEAAPNFALGVQWHPEWQVHSHPHYLALFQGFAEACQARARQR
>NZ_CP045416.1|WP_110778581.1|69862_71239_-|glutamine-synthetase
MMAPPRAVQLNEANAFLKEHPEVQYVDLLITDMNGVVRGKRIERASLHKVYEKGINLPASLFALDINGITVESTGLGMDIGDSDRTCFPIPNTLCKEPWQKRPTAQLLMTMHERDGDPFFADPREVLRQVVSKFDELGLTICAAFELEFYLIDQENINGRPQPPRSPISGKRPHSTQVYLIDDLDEYVDCLQDILEGAKEQGIPADAIVKESAPAQFEVNLHHVADPIKACDYAVLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKNGNNIFATENPLDSQPLRHAIGGLQQTMAASMAFLCPNVNSYRRFGAQFYVPNAPCWGMDNRTVALRVPTDSPDAVRIEHRVAGADANPYLLLAGILAGVHHGLTNKIEPDDPIEGNSYEQVEQSLPTNLRDALRELDDSEIMARYISPDYIDIFVACKESELAEFEHSISDLEYNWYLHTV
>NZ_CP045416.1|WP_063540310.1|69131_69788_-|TetR/AcrR-family-transcriptional-regulator
MTKPSPATTSRRPRASSQARIRQILASARELLAGQGAATLSVYAVAEHAGIPPSSVYHFFSGVPALLAALTADVHATFRASLEQPIDHHSLASWRDLSRLIEQRMLKVYEQDSAARQLILAQHGLGEVTQTDQRLDLELGQAMQAVFERHFALPPLPQDIDVFALAVELGDRVYARSIQLYGSLTPRMAEEGMRVFDAYLGLYLPPCLPKRESPSVNR
>NZ_CP045416.1|WP_125867613.1|68123_69005_-|N-carbamoylputrescine-amidase
MSRVVTVAATQMACSWDRQANIANADRLVREAAAKGAQIILIQELFETPYFCQKPNPQYLQLATPVEQNPAIQHFQKLAAELQVVLPISFFELAGRARFNSIAIIDADGKLLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWNTRYAKIGVAICWDQWFPETARSMALMGAELLFYPTAIGSEPHDASITSRDHWQRVQQGHAGANLMPLIASNRIGREEQDGYDITFYGSSFIADQFGAKVEEMDETSEGVLVHSFDLDQLEHIRSAWGVFRDRRPNLYGSIKTLDGSLPSE
>NZ_CP045416.1|WP_063540308.1|66922_68029_-|agmatine-deiminase
MTTLSSTPRQDGYFMPAEWAPHSQTWMVWPQRPDNWRDNAGPAQAAFTAVAKAIARFEPVTVCASAEQYLAARAALDDPRIRVVEISSDDAWVRDTGPTFVIDDNGGLRGVDWTFNAWGGEDGGLYADWQRDDEVARKILEIEYCDRYRTEGFVLEGGSIHVDGEGTLITTEECLLNRNRNPQLSREQIEAVLREHLAVDSIIWLPHGLYNDETDGHVDNFCCFVRPGEVLLAWTDDANDPNYARCQAALAVLQGARDAKGRALTVHRMPIPGPLHASAAECAGVEALDGSQPRDPSIRLAGSYVNFLIVNGGIIAPAFGDPLDGEAERILTEVFPGHEVVMVPGREILLGGGNIHCITQQQPAPFVR
>NZ_CP045416.1|WP_152480600.1|80074_80977_+|ABC-transporter-permease-subunit
MRRWSFSNLILVLGLLFIYLPMVILVIYSFNASRLVTVWGGWSLKWYAGLLDNSQLMGAVMRSLEVAAYTAIAAVALGTMAAFVLTRIPVFRGRTLFGGLVTAPLVMPEVITGLSLLLLFVAMAQLVGWPAQRGLVTIWIAHTTFCSAYVAVVVMARLRELDLSIEEAAMDLGAPPWKVFFLITMPMIAPSLAAGGMLSFALSLDDLVLASFVSGPGSTTLPMEIFSAVRLGVKPEINAVASLILLSVSLATFLAWHLTRRAEKRRIRAMQQAMDETAGNPTWRQVIDSRKVLVPPSAHS
>NZ_CP045416.1|WP_152480601.1|81070_81640_-|thiol-disulfide-isomerase
MTSRRKYLIAALIALLWAGAMLAAFWWFEARYLRTFEGERAELFSGDALQLPAALQGPGPVRFVHFWDPGCPCNVGNQQHLQELLERFADQPVTFYEVRKPGSQGRLPQPLASLKALEGVIGAEQLPASPAVGIWDQHGELVYIGPYSEGVVCSSDNSFVEPILEAVLAGRKVRATHSLAVACFCDWQG
>NZ_CP045416.1|WP_063540321.1|81725_82664_+|alpha/beta-hydrolase
MSARIQPERLRNSLPALSEAVEASAETLHYQAYYGLDLPHRQSIQRRLGRFRVHDYDVVAQAWWPEQPHASLLILHGYYDHMGLYRHVVDWGLEMGFAVLACDLPGHGLSSGPVASINEFDEYQAVLAGLFEQARQLDLPRPWHLLGQSTGGAIALDHLLHQAENPDLGRTILLAPLVRPRAWLRSRLSYELLRPFVRQIRRSFSDNSGDPAFLEFVQTRDPLQADILPTAWVGALSRWIPRIEGAADSAHAPLIVQGEADMTVDWRHNLPILESKFAAAQILRLPDARHHLVNEREEIRRAYFDFLRERLG
>NZ_CP045416.1|WP_102839171.1|82674_83439_-|DUF2059-domain-containing-protein
MRALLTCVLLTFSLASFADTYEELYETAGWTEQRANFSDALTAAQQRYKDTLPPAVFQTLVTNSNRRFASHAIDQRAQQALREHLAEPQPALEFFQSTLGRKIVSAEVLAARREQLAQHASGLPRMEAGSNRQLLIRHLAQALPASEAGAEVSLALAGVAADSLSQMIPGLLGGNQAQSLLSSQRQRMIEQIEGDLDNTLLYVYRDLSDAELEQYLEFARSDDGKAYYQAALQALRAGLAVGMSGTELEPQQGI
>NZ_CP045416.1|WP_110778575.1|83592_84201_+|2OG-Fe(II)-oxygenase
MQFSSIIDDLAERGWSLQSSFLPSDVTHKLADECRRREAEGALAPAAVGRGEAQAVREGIRSDHIQWLEPGQSPVCDDYLELMDGLRQQLNRELFLGLEEFECHFAFYPPGAFYQTHLDRFRDDDSRSVTAVLYLNPDWQPAHAGELRMHLADGSQLDVPPLAGNLVVFLSGDFPHEVLVTQADRLSLTGWFRRRPADVLAL
>NZ_CP045416.1|WP_063540324.1|84277_85558_-|TRAP-transporter-large-permease
MTILFLFVALFVLMFIGVPVAVSLGLAGSLTIMIFSQDSVRSLAIKLFETSEHYTLLAIPFFLLAGAFMTTGGVARRLIDFANACVGHIRGGLAIGAVLACMLFAALSGSSPATVAAVGSIAIAGMVRSGYPQAFGAGIVCNAGTLGILIPPSVVMVVYAAATETSVGKLFMAGVVPGILLGGALMLAIYIIAVKKNLPALPRASFREWLSAARKAVWGLLLMVIILGGIYSGMFTPTEAAAVAAVYSAFVALFVYKDLSWRECPKVLLESGKLSIMLMFIIANAMLFAHVLTTEQIPQAITAWVIEAGLQPWMFLLVVNIVLLVAGAFMEPSAIILILAPILFPIAVQLGIDPIHLGIIMVVNMEIGLITPPVGLNLFVASAVTGMPVTQVIRAVLPWLALMLSFLVIITYVPSISLGLPNMLGM
>NZ_CP045416.1|WP_063540325.1|85557_86184_-|TRAP-transporter-small-permease
MNALWRVWDHFEEGFIAFLLAAMTLVTFVYVILNNLYTLFYDLGDRFEGSADFWFAIGDFIIGLAQSMTWSTALTKALFAWLIFSGLAYGVRTAGHIGVDALVKLAPRHIQRVIGIIACLFCLGYAGLLTVASFEWIQTLFIANIGAEDLGHIGIKQWHIGMIVPFGFAMVFIRFAEIFVRILRNEQTGLGLADEAADALKHGEEEPK
>NZ_CP045416.1|WP_063540326.1|86448_87444_-|TRAP-transporter-substrate-binding-protein
MFKLTAKALACALSLSIAGLAHAADPITIKFSHVVAENTPKGQGALMFKKLVEERLPGKVEVQVYPNSSLFGDGKEMEALLLGDVQLIAPSLAKFEHYSKGVQVYDLPFLFDDIAAVDRFQKSEAGQSLLRSMEDKNITGLGYWHNGMKQLSANKELREPKDARGLKFRVQASAVLDEQFKALRANPRKMSFAEVYQGLQTGVVNGAENPYSNIYSQKMHEVQKHITESDHGLLDYMLITNTKFWNGLPADVRGELEKIVEEVTVEVNKQADDLNQKAKADILAAGTTEILVLTPEERAKWREAMKPVWKKFEGEIGADLIKAAEAANQAK
>NZ_CP045416.1|WP_152480602.1|87785_89180_-|sigma-54-interacting-transcriptional-regulator
MSSDTPISAQAQVVLIDDDPHLRQALSQTLDLAGLEVVSLGDARGLAARLPADWQGVVVSDIRMPGIDGLELLQQLRARDNELPVILITGHGDIQLAVQAMRAGAYDFLEKPFPSEALLDSVRRALALRQLVLDNRSLRLALADRQQLSARLLGQSRAMLRLREQIGALAGTQADVLILGETGAGKEVVARALHDLSSRRNGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLDEIESMSLDVQVKLLRLLQERVVERLGGNQSIALDIRVIAATKEDLRVAADQGRFRADLYYRLNVAPLRIPSLRERSEDILLLFQHFAEAAAQRHGLPIRELQPEQRAVLLQHAWPGNVRELQNTAERFALGLGLGLDVPGSEPATSLASGGSLGEQVDAFERALIAAELNRPHGSLRSVAEALGLPRKTLHDKLRKHGLSFADAGGSSPDDND
>NZ_CP045416.1|WP_063540328.1|89176_90982_-|sensor-histidine-kinase
MTAPLPPRRPRWRNLALLALLLAPLLWPLQQLAERYYRNELTEQNRQTLDLYVANLLGTLNRYEVLPRILGDLPALRAVLQEDSPQVRDNANRLLKRLRKQTGADVIYLMATDGNTLAASNWDEEDSFVDRNFAFRPYFRQAMEGHLGRFFGLGTTSGKRGYYFGAAVRDGDQVLGVLVVKVDLDHTETLWGSTPEQLLVTDNFGVVILTSRPEWRFRATRGLGVEEREQIAFDQPYPTLYPQDLTLDIDAWLIQSRELKETGWTVRILAPVNLVERPVRTVVAIGAATLLALLLWLGLLMQRRRHFLERLALDSQARQQLEQRVQERTRDLEALNSRLKVEVLEREQAQQELVRAQDELLQAGKLSALGTMSASISHELNQPLAAIRSYADNAGVLLEHGRTSEARDNLRLISELTARMASIIAHLRAFARRDQHAPERVALQPALDDALALLAKRRQAMGVELIRDLPEATLWVQAGETRLRQILANLLANALDALAERPQPRRIWLRAEREGDGVLLSLRDNGPGFSAEALQRAREPFFTTKTSAQGLGLGLAICDTLIRALGGELRMSNHPEGGAQLGLFLRSAEPGVAFPSEDHLQ

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Crispr_ID: NZ_CP045416_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045416_2

906913-907011

Orphan

Consensus_repeat	Method
CGAGCGGCTGCTGGTGGTGACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045416_2

>merge|NZ_CP045416|2|906913-907011|CRISPRCasFinder
CGAGCGGCTGCTGGTGGTGACCCGCGCCGACAATGGTCCGCTGCACGACTGGCTTCGCGCCCATGCCGAGGACTGCGAGCGGCTGCTGGTGGAGACCCG

>NZ_CP045416|2|2|906913-907011|CRISPRCasFinder
CGAGCGGCTGCTGGTGGTGACCCG	CGCCGACAATGGTCCGCTGCACGACTGGCTTCGCGCCCATGCCGAGGACTG
CGAGCGGCTGCTGGTGGAGACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045416.1\|WP_152480854.1\|896067_898221_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293739
NZ_CP045416.1\|WP_152480860.1\|903714_905010_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP045416.1\|WP_152480857.1\|899373_900930_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|99810
NZ_CP045416.1\|WP_152480858.1\|901025_902432_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NZ_CP045416.1\|WP_152480868.1\|915380_915758_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP045416.1\|WP_152480866.1\|912753_913833_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NZ_CP045416.1\|WP_152480864.1\|908961_911163_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224446
NZ_CP045416.1\|WP_172974158.1\|913829_914885_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NZ_CP045416.1\|WP_152480869.1\|915754_916882_-\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_CP045416.1\|WP_125869435.1\|895631_896039_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|260133
NZ_CP045416.1\|WP_152480863.1\|907978_908965_+\|FAD-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224238
NZ_CP045416.1\|WP_152480855.1\|898291_898816_-\|cytochrome-C	unknown	unknown	gnl\|CDD\|378226
NZ_CP045416.1\|WP_152480859.1\|902504_903593_-\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	unknown	unknown	gnl\|CDD\|235332
NZ_CP045416.1\|WP_152480867.1\|914919_915324_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP045416.1\|WP_152480865.1\|911373_912612_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224748
NZ_CP045416.1\|WP_013981825.1\|907469_907982_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP045416.1\|WP_152480861.1\|905772_906747_+\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|224886
NZ_CP045416.1\|WP_152480856.1\|898826_899231_-\|DUF1924-domain-containing-protein	unknown	unknown	gnl\|CDD\|378118
NZ_CP045416.1\|WP_011912111.1\|905140_905704_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153229
NZ_CP045416.1\|WP_152480870.1\|916978_917755_+\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792

Protein	Function_ID	Function_description	E-value
NZ_CP045416.1\|WP_152480854.1\|896067_898221_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	1.34698e-76
NZ_CP045416.1\|WP_152480860.1\|903714_905010_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.56463e-171
NZ_CP045416.1\|WP_152480857.1\|899373_900930_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|99810	cd06214, PA_degradation_oxidoreductase_like, NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	2.06243e-86
NZ_CP045416.1\|WP_152480858.1\|901025_902432_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.32584e-77
NZ_CP045416.1\|WP_152480868.1\|915380_915758_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	5.38179e-48
NZ_CP045416.1\|WP_152480866.1\|912753_913833_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.33067e-29
NZ_CP045416.1\|WP_152480864.1\|908961_911163_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP045416.1\|WP_172974158.1\|913829_914885_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.48491e-44
NZ_CP045416.1\|WP_152480869.1\|915754_916882_-\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	3.30223e-98
NZ_CP045416.1\|WP_125869435.1\|895631_896039_+\|diacylglycerol-kinase	gnl\|CDD\|260133	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of diacylglycerol to phosphatidic acid. Escherichia coli DAGK participates in the membrane-derived oligosaccharide cycle (MDO cycle) by recycling lipids to restore phosphatidylglycerols that were used up in the biosynthesis of MDOs. DAGK also recycles diacylglycerols that are produced during the biosynthesis of lipopolysaccharides (LPS) back to phospholipids. DAGK is not the main source of phosphatidic acid in de-novo biosynthesis of glycerophospholipids. Escherichia coli DAGK has low activity as an undecaprenol kinase.	2.76279e-44
NZ_CP045416.1\|WP_152480863.1\|907978_908965_+\|FAD-binding-domain-containing-protein	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	2.53227e-93
NZ_CP045416.1\|WP_152480855.1\|898291_898816_-\|cytochrome-C	gnl\|CDD\|378226	pfam09626, DHC, Dihaem cytochrome c. Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth. In certain species DHC is found upstream of pfam01292.	4.93315e-44
NZ_CP045416.1\|WP_152480859.1\|902504_903593_-\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	gnl\|CDD\|235332	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated.	0
NZ_CP045416.1\|WP_152480867.1\|914919_915324_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	2.76251e-22
NZ_CP045416.1\|WP_152480865.1\|911373_912612_-\|acyltransferase-family-protein	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	7.04854e-23
NZ_CP045416.1\|WP_013981825.1\|907469_907982_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	2.61313e-82
NZ_CP045416.1\|WP_152480861.1\|905772_906747_+\|XdhC-family-protein	gnl\|CDD\|224886	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones].	3.14417e-57
NZ_CP045416.1\|WP_152480856.1\|898826_899231_-\|DUF1924-domain-containing-protein	gnl\|CDD\|378118	pfam09086, DUF1924, Domain of unknown function (DUF1924). This domain is found in a set of bacterial proteins, including Cytochrome c-type protein. It is functionally uncharacterized.	6.97217e-43
NZ_CP045416.1\|WP_011912111.1\|905140_905704_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|153229	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme.	4.32097e-72
NZ_CP045416.1\|WP_152480870.1\|916978_917755_+\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	3.59774e-123

>NZ_CP045416.1|WP_152480861.1|905772_906747_+|XdhC-family-protein
MDSVDLAVLRRACDWLRDGHAVVLYTVIETWGSAPRPVGSLLALRGDGRVEGSVSGGCVEDDLLARVMADEPPSTCQLITYGVSKEESARFGLPCGGTLRLLQEPLRDAGWIDELLSRCAAHERLLRRLDMASGAVVLQPVGREAVLQFDGHTLRAPFGPAWRLLMIGAGQLSRYVADLAHGLGFEVLICDPREGYAHDWNPAAVRFVPGMPDDAVLAIEPDAHTAIVALTHDPRLDDMALLTALQSEAFYVGALGSRVNSEKRKARLLSLGLGERQVQRLHGPIGLPIGSRTPAEIALSLMAEVVALKNGALAPSLSAQQRCA
>NZ_CP045416.1|WP_011912111.1|905140_905704_+|DJ-1/PfpI-family-protein
MSKRVLIPIADGSEDLEAVTLIDVLRRAEFDVVVASAEERRMLTCARGTRITADTMLLDVLAQDFDLIVLPGGMPGAKTLGELEPLAERVRQQARAGLDYAAICAAPAVALHPYGVLKGRQVTCYPGMSDNLTGTHFLDQPVVVDGNCITSQGPATALEFALTLVERLAGRGKRREVADAMLVPATN
>NZ_CP045416.1|WP_152480860.1|903714_905010_-|NCS2-family-permease
MLEKLFQLKAHNTTLRTEILAGITTFLTMAYILFVNPSILAETGMDHGAVFVATCLAAAIGSAIMGLVANYPIALAPGMGLNAFFTYTVVLTMGYTWQTALGAVFLSGLIFFGLSIFKIREWIIHSIPLALRAGIAAGIGLFLAIIALKNAGIVVDNPATLVGLGDLSAGGPLLACLGFFLIAALAYRKVTGAVMIGILVVTGLSILFGLSQLNGVVSMPPSLAPTFLQLDIMGALDIGLISVIFAFLFVDLFDTSGTLIGVAQKAELLDKDGKMPRLGRALLADSTATMAGAALGTSTTTSYIESAAGTAAGGRTGLTACVVALLFLLSLFFAPLAGAVPAYATAPALLFVAVLMMSSLAGIDWDDLTVAAPVAIAALAMPLTFSIANGIAFGFIAWTAIKLLAGRWRELSPAMWILSALFVVKLGWFAG
>NZ_CP045416.1|WP_152480859.1|902504_903593_-|tRNA-(uridine(54)-C5)-methyltransferase-TrmA
MSAPQFDPATYAAQLAEKAARLEELLAPFDAPAAEVFDSPREHYRLRAEFRLWREDGQRHYAMFEQGDKHKAILIDDFPIASRRINELMPRLKAAWQASEVLSFKLFQVEFLTTLSGDALITLAYHRPLDEAWQAEAEQLAADLGVSLVGRSKGKRIVIGRDYVEEELVVAGRRFRYRQPEGAFTQPNGEVCQKMLNWAFEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAALANIEDNGIDNIELVRLSAEELTQALNEVRPFRRLAHIDLKSYEFSSIFVDPPRAGMDPDTCELARRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMEAGVLLVRK
>NZ_CP045416.1|WP_152480858.1|901025_902432_-|MBL-fold-metallo-hydrolase
MLVFEPIYTDGLAQISYLVGDSKAAVAAVIDPRRDVDVYLDLAREKGLRIAYAIETHIHADFVSGAQALAERSGAEIIGGCSPDYAFELRQAADGEVLELGQVSLEIIYSPGHTPEHISLLLRDGQQGDEPFALFTGDTLFNLDVGRPDLLGEDSTKQLAAQLYATLFTRYLPLGERVEIYPCHGAGSACGKSIGDRRRSTLGNELLFNPALNQRRSESEFVDWLLAGMPEPPRHYARLKRYNVRPATRIHGPALPPPLSPERFAERIADKEAVQLVDLRSILAFGGGHVDGALNIALRNEFVSWAGWMLDDQRPIFLIGEDSQQVQQATLQLYRIGLDRVEGYLRNGMTDWQNAGLPLARVEQWTVHELEARREDPQVQVLDVRSPEEVAQGRVPGAEHAFVAHLPDGLGRLDRSKTVATYCGSGYRASIAASILKREGFRDVVNIPGSWMAWQRHDLPVEKSPSDG
>NZ_CP045416.1|WP_152480857.1|899373_900930_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MAAFKRFRLFHWLLAGFFVAVYLSGDDAELLHVWLGYGLVALLVLRLLIARLRPRGFPRLLPARQQPRKPSLTTFGSWLTFGTLLSLALASLLGLGMVDNGDVLAALPGVGPDLFGAASDLDFVGWLGDAEEVHEFFANLALTLVALHIGYVLLFRRTAAWAMLRGPRQPAEPAAPVSVAVSETPVFAALTVISRRAETADTGSFSLQVPAELRERFAAQPGQFVTLRVPCAERPLLRCYSLSKLLGGDGVLRITVRRVPGGRASNWLLDNLQVGQRIELLPPAGRLVPDDLDGDLLLLGAGSGITPLRAILEAALELGRGRVFLFYASRDAASLIFAEELADLAARHPERLQLRIWLDAEQGVPSGPAIAAKIADWPQGEAFVCGPQPFMDGASAALAELGVKSDSIHLERFDAPVPAVPLGEPRQPLRSRLQVALDGRRHALDVPQGEVLLDAMEQAGLQPPSACRSGVCAACRCRVVEGSVSMRSNQVLSDQQVRQGWTLACQAVPTSARLAVEY
>NZ_CP045416.1|WP_152480856.1|898826_899231_-|DUF1924-domain-containing-protein
MKAHWIALACCLSLPALAETEHPLLAGYAAQARQQDPAFAGFSAERGEALYVAEEQRNGKTMSCTTCHTADPRQAGKTPAHRKVDPLAPVANPERFTNLKKVEKWFRRNCDDVFARECTAQEKGDFIVWITGLK
>NZ_CP045416.1|WP_152480855.1|898291_898816_-|cytochrome-C
MKPIVALSTVAGLTLALTLAGFSLADDDHHERKGYKRPKRLSIPSDAPLVWKEECAACHMLYSPGLLPADAWREQMRTLSDHYGSNASLDPAQEKEILDFLVRASAANRLPVEPSSTTGEPPRISQTRWFERKHDEVSDAKFDRESVGGRFNCVACHRDAERGDFDDDRVKIPR
>NZ_CP045416.1|WP_152480854.1|896067_898221_+|sulfatase-like-hydrolase/transferase
MTDGTARAQAGQPGLRHHLLFMAGSALALLMLFTLLRLALLLYNRELLGDASLATLLEGFGNGLRFDLRLLVYICVPLSLAVLSRRAMAARRLQRLWLAACASLVILLGMVELNFYQEFHQRLNSLVFQYLAEDPATVLSMLWHGFPVLTLLSVWGGLTLIWSLLFGWLDRRCRPRAGLLTKRSTAPMQLSWHWHGATLVALVLISVVAARGTLRQGPPLRWGDAFTTDSVFINQLGLNPALTLYEEAKNRYSDHRDNAWKAVLPEDEALAVTRALLLTGNDRLADPELAAVRRDYRAPEAGRLPVRNVVVILMESFAGRYVGALGSRDGITPHFDRLAAEGLLFERFFANGTHTHQGMFASMACFPNLPGFEYLMQSPEGGNRFSGLPQLLSARAFNDVYVYNGDFAWDNQLGFFGNQGMTRFVGRNDYIDPVVADPTWGVSDQDMFDRAVQELGALAPGEPFYALLQTLSNHTPYALPDPLPVPAVSGHGSQDAHLTAMRYSDWALGRFFEQAKRQPWYQDTLFVVVGDHGFGAPEQLTEMDLFRFHVPLLLIAPGVTEQFGSRREVVGTQVDVVPTIMGRLGGEVRHQCWGRDLLALDERDPGFGIIKPSGSDQTVAMIRGEQILVQPKDLEPRLYRYRLGADASAQRVADAASTAPMLRQLQAYLQVATASLLANSAGDRERKEPETGQKLARAGGGQQVVLPAPGARQPREG
>NZ_CP045416.1|WP_125869435.1|895631_896039_+|diacylglycerol-kinase
MSSELSSERDRAVADGAALKGRSGLTRLWLAGGYSFAGLRAAYLGEAAFRQVVLLNLLLIPLAFLLDVSRVERAVLIAVVLLAPIVELLNSAIEATVDRISLELHPLSKRAKDMGSAAQLLTMTLIALVWAVILL
>NZ_CP045416.1|WP_013981825.1|907469_907982_+|(2Fe-2S)-binding-protein
MSEHSSAAGQTCTISLELNGERRELQVQPWTTLLDLLRDQLGLTGTKKGCDHGQCGACTVLLDGRRINSCLTLAVMHDGARLTTIEGLASTEALHPLQAAFVKHDAFQCGYCTPGQICSAAGLAAEHRASSRDEIREHMSGNLCRCGAYPNILAAIEEALPVLRGQEGAQ
>NZ_CP045416.1|WP_152480863.1|907978_908965_+|FAD-binding-domain-containing-protein
MTPFSYQRPERIDQAIALHGPDSRYIAGGTNLLDLMKENVLHPGQLIDINGLPLREIEQTAEGGLRIGALVSNADLAWHPQIEQRYPLLSKAILAGASPQLRNMASTGGNLLQRTRCYYFYDTATPCNKRDPGSGCGAHDGRNRIHAILGASEACVAVHPSDMCVALAALDARVHIEGPHGQRRVDLVDFHRLPGDQPQLDNVLTEGELITAVELPVEGFASHCAYLKVRDRASYAFALVSVAAALEVDGDIIRRARIALGGVAHKPWRLEEAEDLLSGQRAEPARFAAAADRLLQGAQPLADNAFKIDLAHRAIVRALTEAAGGTVR
>NZ_CP045416.1|WP_152480864.1|908961_911163_+|molybdopterin-dependent-oxidoreductase
MNSANSPLGKPLDRVDGPLKVTGKACYAAEAEVPGLLYGAVVSSRIARGRVTRIDAAAAEALPGVRLVLTHQNRPPVASYDEPYEDDDAAEGSPFRPLYNDRVLYSGQPLALVVAETQALARHAASLVRVEYEVEAHQTDLQAVRDQAHDAPAELPEPRGDFDSAFAAAANRIDREYETPVEHHNPMEPHASIVQYQPGGELLIHDKTQGVQNCQRYLEQVFDMEGKIRVLSPFVGGAFGSGLRPQYQLPLAVMAALKLKASVRVELTRQQMFTFGYRPRTVQQLKLAADGEGRLQAIEHRAIGQTSRFEDFTEHEVEWSGMLYACDNVRLGYRLAPLDVYTPLDMRAPGATIGVYALECAMDELAYEVGIDPLELRLRNYTETNGNEGKRYSSKELRACYQQGAERFGWSRRPTQPRSLRDGHQLVGMGMATGVWEAMQMPASARACLDADGRLLVTSATADIGTGTYTAMTQIAADAMGLPMSEVEFRLGDSSLPQAPLEGGSATVSSVGSAVQRACAGLRQKLLDAVQQSPASPFTGASLDAVEFVDGQLRLKTGEHAVALRDIVQVSGALDAEASVKPDEKRDAWATATHSAVFVEVRVDEDLGTIKVSRVVSAIAAGRIVNPKTAGNQIVGGVVWGIGQALHEETLIDHQLGRYMNHNLAEYHIPVNADIPEVEVIFVEEHDEVVNELGSKGVGEIGIVGVAAAVANAVYNATGRRVRDLPITLDKLL
>NZ_CP045416.1|WP_152480865.1|911373_912612_-|acyltransferase-family-protein
MARTEHFIGLEWLRFLLAIYVVLFHTVHAYVEDEPTWLSELAGVGFFATSSFFVLSGFLLAHVYCRQGELREPARHFLGKRLANLYPLHLFSLLLTAIVLTVIAKLGIPPDDAKASLRYVVYDTNEELSGEARDALEYFMNNRELAFNFILQLLMLHAWNPLYLTFNPPLWSISTLFFFYLCFPLLAPRLMRLRHKGWWLLAIAALYLLPPLWAIQQDAYGIPVTGMLHRMPLLRLPEFLAGILLCGLFREWRAAGGQLGIAARLALGAFVLASFLATVWLLKGERYWYFLLHNGLLLPAQLALVWLCALIATPRSAAVVGWSQRLGAASLPLFVLHVPVFILFSRSEKLLGAVSAECLEDWADCVAQAGELALTPAFYPLYLGLCIVVCVLAQERAVVPVRQFLLRRVLKV
>NZ_CP045416.1|WP_152480866.1|912753_913833_+|serine-hydrolase
MLLPAPLRSPIAVLCLLLITLPLAQRAVAQDSIEWSGPLLARLAQVDRQTPGQLGVYVKDMQTGISVSYHGEDAWYLASTVKVPIAIAVLRRIEQGDLTLDSPVTLLASDYVDGAGPTNRHAPGKALSVRYLLDQMLIHSDNTASDMLIRLVGIERVNAVTRELVPEGFGPITTLADVRRLIYGELHPAARTLSGKDFLALKRQLNDAGRLALLPRLIGVERSALVPISLGEAYERYYATPFNSGTLKAYGDLLSALDAGTALGPASTEYLLSVMRRVETGARRIKAGLPSGTGFAHKTGTQRARICDAGLVDQPGAADSTSQRLIIVACVRGVASTTQAERALRGTGEAVAAAGLIRR
>NZ_CP045416.1|WP_172974158.1|913829_914885_+|serine-hydrolase
MSRLIALGALLVPLAGLTACTEQAEATWKDGLEQELRRVDEASPGKLGVYIKHLGEDAELRYDAERFWYLGSAVKVPIALAVLQGVDDGEFRLDQRLTLEAEDKVDGSGDLVWQDNGVDYSLRDLLKEMLIESDNTAANMLIRLVGEDALNQRTRKSMGGDFEAITSFTQVRRDVYGEVHPDAARLDNMQLVELASAPFSKPRYEALARVLNLQQDALKAASMEQAYKRYYARKLNSSSLVAYGTMLEKLVRGELLSTESRDLLYGFMKLDSYDNYRLEAGLPEDVPFIQKTGTQLERACHVGVIEPEDERRAIVVVACAEALDEGKEAGSLFEQVGQAISKALLSKARPN
>NZ_CP045416.1|WP_152480867.1|914919_915324_-|carboxymuconolactone-decarboxylase-family-protein
MSASTRYTGGLAKLEEIDGEAGRKVIDSLQAIAPDLARYVIEFPFGDIYQRPGLDLPQRELATVAALTALGHCQPQLAVHVHGALNVGCTPEQIVEVVIQMAVYAGFPAALNGMHTVKAVFAERGLLPTGNANK
>NZ_CP045416.1|WP_152480868.1|915380_915758_-|MerR-family-transcriptional-regulator
MNEVPVRLSIRQFAARTGLSADTLRYYEKIGVLRQVARDASGFRVYGPRDLEWIGFILRLKDTGMALDDIIRYAELRECGDTTLAARQALLEEHAARLQERIQRDHDHLDALRAKIALYRQQTSA
>NZ_CP045416.1|WP_152480869.1|915754_916882_-|methyltransferase
MPILDTPYASLDLIRQPEQPNEPLQAFDAADEYLLATLHEQGLPTAARVLILNDSFGALACSLAAHVEVTSSGDSHLAHLALQKNLARNDLPAERVRFVPASEAAQGPFDRVLIRVPKTLALLEEQLIRLHGQLAPGAQVIAAAMIKHLPRAAGDLLEQYIGPVQASLAVKKSRLLSATPVDKPAPQSPYPTCYQLDQPKLELLNHANLFCREGLDIGTRAFLPHLPKALGALRVADLGCGNGVLGIVYALGNPQAELTLVDESYMAVQSARENWQAILGERPADIRAGDGLAEQPPASLDLVLCNPPFHQQQVVGDFLAWRMFTQAKAALTKGGELWIVGNRHLGYHLKLKRLFGNAEQVAATPKFVVLRSIKA
>NZ_CP045416.1|WP_152480870.1|916978_917755_+|ferredoxin--NADP-reductase
MTASEEKFTRQRLLEVQTLTPNLFTLRTSRDPGFRFTAGQFARLGVRKPSGCIVWRAYSMVSAPHDEFLDFFSIVVPDGEFTSELSRLKVGDELLVDKQAFGFLTLDRFPDGRDLWLLATGTGIAPFLSILQDFEAWQRFERIILVYSVREARELAYQQLIAELPQRDYLEGLGTKLLYLPVVTRERVPGALHGRITTLIENGELERAADLQLTPEHSRIMLCGNPQMIEDTRAVLKARDLNLAMTRRPGQVAVENYW

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Crispr_ID: NZ_CP045416_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045416_3

3351415-3351503

Orphan

Consensus_repeat	Method
TCCGAGGCCGGCCGCAAGGGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045416_3

>merge|NZ_CP045416|3|3351415-3351503|CRISPRCasFinder
TCCGAGGCCGGCCGCAAGGGTGGTCACAACAGCGGCGGAAACTTCGCCAACGACCGCGAGAAGGCCTCCGAGGCTGGCCGCAAGGGTGG

>NZ_CP045416|3|3|3351415-3351503|CRISPRCasFinder
TCCGAGGCCGGCCGCAAGGGTGG	TCACAACAGCGGCGGAAACTTCGCCAACGACCGCGAGAAGGCC
TCCGAGGCTGGCCGCAAGGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045416.1\|WP_102839788.1\|3349195_3349420_-\|DUF2188-domain-containing-protein	unknown	unknown	gnl\|CDD\|378323
NZ_CP045416.1\|WP_152481645.1\|3358140_3359031_-\|ArgP/LysG-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|235144
NZ_CP045416.1\|WP_152481643.1\|3354616_3356539_+\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|225780
NZ_CP045416.1\|WP_152481644.1\|3356601_3357498_-\|ATPase	unknown	unknown	gnl\|CDD\|274008
NZ_CP045416.1\|WP_152481633.1\|3340308_3341217_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP045416.1\|WP_152481641.1\|3350913_3351165_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045416.1\|WP_152481639.1\|3348335_3349184_+\|urea-transporter	unknown	unknown	gnl\|CDD\|377010
NZ_CP045416.1\|WP_110776142.1\|3357859_3358132_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045416.1\|WP_152481638.1\|3346827_3348243_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|180487
NZ_CP045416.1\|WP_133456347.1\|3360993_3363054_+\|GGDEF-and-EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP045416.1\|WP_152481640.1\|3349684_3350863_+\|NO-inducible-flavohemoprotein	unknown	unknown	gnl\|CDD\|237337
NZ_CP045416.1\|WP_152481642.1\|3353060_3354257_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP045416.1\|WP_152481637.1\|3345499_3346771_+\|DUF4147-domain-containing-protein	unknown	unknown	gnl\|CDD\|225254
NZ_CP045416.1\|WP_152481636.1\|3344284_3345175_+\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|185019
NZ_CP045416.1\|WP_152481647.1\|3360125_3360707_+\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP045416.1\|WP_020308776.1\|3343429_3344212_+\|hydroxypyruvate-isomerase	unknown	unknown	gnl\|CDD\|163190
NZ_CP045416.1\|WP_125869074.1\|3351818_3353012_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235406
NZ_CP045416.1\|WP_110776139.1\|3363208_3364102_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372140
NZ_CP045416.1\|WP_152481635.1\|3341469_3343251_+\|glyoxylate-carboligase	unknown	unknown	gnl\|CDD\|183066
NZ_CP045416.1\|WP_152481646.1\|3359123_3359732_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|224198

Protein	Function_ID	Function_description	E-value
NZ_CP045416.1\|WP_102839788.1\|3349195_3349420_-\|DUF2188-domain-containing-protein	gnl\|CDD\|378323	pfam09954, DUF2188, Uncharacterized protein conserved in bacteria (DUF2188). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00150653
NZ_CP045416.1\|WP_152481645.1\|3358140_3359031_-\|ArgP/LysG-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	7.91687e-154
NZ_CP045416.1\|WP_152481643.1\|3354616_3356539_+\|autotransporter-domain-containing-protein	gnl\|CDD\|225780	COG3240, COG3240, Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only].	1.46525e-52
NZ_CP045416.1\|WP_152481644.1\|3356601_3357498_-\|ATPase	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	7.1609e-06
NZ_CP045416.1\|WP_152481633.1\|3340308_3341217_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.21537e-88
NZ_CP045416.1\|WP_152481639.1\|3348335_3349184_+\|urea-transporter	gnl\|CDD\|377010	pfam03253, UT, Urea transporter. Members of this family transport urea across membranes. The family includes a bacterial homolog.	1.34193e-38
NZ_CP045416.1\|WP_152481638.1\|3346827_3348243_+\|pyruvate-kinase	gnl\|CDD\|180487	PRK06247, PRK06247, pyruvate kinase; Provisional.	0
NZ_CP045416.1\|WP_133456347.1\|3360993_3363054_+\|GGDEF-and-EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.32386e-112
NZ_CP045416.1\|WP_152481640.1\|3349684_3350863_+\|NO-inducible-flavohemoprotein	gnl\|CDD\|237337	PRK13289, PRK13289, NO-inducible flavohemoprotein.	0
NZ_CP045416.1\|WP_152481642.1\|3353060_3354257_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.06425e-54
NZ_CP045416.1\|WP_152481637.1\|3345499_3346771_+\|DUF4147-domain-containing-protein	gnl\|CDD\|225254	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP045416.1\|WP_152481636.1\|3344284_3345175_+\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|185019	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase.	6.20943e-125
NZ_CP045416.1\|WP_152481647.1\|3360125_3360707_+\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.52812e-112
NZ_CP045416.1\|WP_020308776.1\|3343429_3344212_+\|hydroxypyruvate-isomerase	gnl\|CDD\|163190	TIGR03234, OH-pyruv-isom, hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.	1.19668e-154
NZ_CP045416.1\|WP_125869074.1\|3351818_3353012_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|235406	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional.	0
NZ_CP045416.1\|WP_110776139.1\|3363208_3364102_-\|hypothetical-protein	gnl\|CDD\|372140	pfam12483, GIDE, E3 Ubiquitin ligase. This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis.	1.70172e-05
NZ_CP045416.1\|WP_152481635.1\|3341469_3343251_+\|glyoxylate-carboligase	gnl\|CDD\|183066	PRK11269, PRK11269, glyoxylate carboligase; Provisional.	0
NZ_CP045416.1\|WP_152481646.1\|3359123_3359732_+\|LysE-family-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	7.31353e-67

>NZ_CP045416.1|WP_152481641.1|3350913_3351165_+|hypothetical-protein
MRHARSATLNLMALASALMIGGLLLLLLGITGAYFFDHRLTMAGIVAAHSLVILGPTAVKIGYVMRLLAERQERLASYSTQHI
>NZ_CP045416.1|WP_152481640.1|3349684_3350863_+|NO-inducible-flavohemoprotein
MLCAEQIALIKATVPLLESGGEALTTHFYKLLLSEHPEVKPLFNQAHQASGEQPRALANGVLMYARHIDRLEALGPLVAQIINKHVALQVLPEHYPLVGSCLLRAIREVLGEAIATDAVIDAWAAAYQQLADLLIGQEERLYQAKAEAPGGWRGARRFRIARKVRESEEITSFHLLPEDGGVLMDFLPGQYIGLRLQVDGNEVRRNYSLSAAGNGSEYRISVKREPGGVVSNALHDMPEGATVELFAPAGEFILEPGDKPLVLISGGVGITPTLAMLETALATSRPVHFIHCARNAGVHAFRRTVDALAERHGQLKRFYCYEEHDDSTGAPDAVGRLTEQQLADWLPADRDVDAYFLGPKPFMAAIKRQLKSLGVPEQQTRYEFFGPASALD
>NZ_CP045416.1|WP_102839788.1|3349195_3349420_-|DUF2188-domain-containing-protein
MEIYHITHEDDRWVLREEGDQRALIEAARREDILDETRDYMKLRTSLVKVHAENGEVAEEHRYPQEQDPLATGG
>NZ_CP045416.1|WP_152481639.1|3348335_3349184_+|urea-transporter
MPDLLQLRAVLHAFAQIFLQRHAGCGALIMLALASGAPAQLAGALCGVLVAHAGASWLGYSAADRNDGLYGYNAALLGALLVDLLGLTGTSLALAGVAALASCPLQAWLLARLRRGDGLPGFTLPFVLIGLLAVRLIEPAPVTSSGMPSADAATLLTAWLLGIGQVVFLDAPLAAACLLVAVALASLRDAFWLLTGSALGLLLAGPLGAPWSDGLAGFNPALAALALAQWRGGWRLPLLGMLAAVAIWRACIELGLPTLALPFLLATWLGLTLRAPRSDRVE
>NZ_CP045416.1|WP_152481638.1|3346827_3348243_+|pyruvate-kinase
MTHDKKVKILATLGPATRSVDDVRALVEAGVNLFRLNFSHGEHSDHAERFAWIRQVERELNQPIGILMDLQGPKLRVGRFAEGKVRLEREQAFRLDLDPTPGDSRRVNLPHPEIIAALEPGMRLLIDDGRLRLTVVERHADAIETRVVAGGELPDRKGVNVPEAVLELSPLTAKDRQDLTFGLELGVDWVALSFVQRPQDIQEARKLIGERAFLMAKIEKPSAVQHLREIARLSDAIMVARGDLGVEVPPENVPRIQKDIVRICRQLGRPVVVATQMLESMRFAPAPTRAEVTDVANAVAEGADAVMLSAETASGDYPLEAVSMMSKIIRQVESGPDFQAQLDVHRPNAEATLPDAISCAIRRISGILPVAVLVNYTESGRSSLRASRERPATPILSLTPSTATARKLTVAWGVYSVVDAPMRDMEQVSSHAVELAQAQGMAESGDTVLITAGVPLGQPGTTNSLRIEVLP
>NZ_CP045416.1|WP_152481637.1|3345499_3346771_+|DUF4147-domain-containing-protein
MTLDPQALLRQLFDSAIEAAHPRHVLADHLPEDRSGRAIVIGAGKAAAAMAEAIEKVWEGELSGLVVTRYEHHADCRRIEVVEAAHPVPDDAGERVARRVLELVSNLEESDRVIFLLSGGGSSLLALPAEGISLADKQAINKALLRSGAHIGEMNCVRKHLSAIKGGRLARACWPASVYTYAISDVPGDEATVIASGPTVADPTTSAEALAILERYHIEVPANVRAWLEDPRSETLKPGDPMLSRSHFQLIATPQQSLDAAAQAARAAGITPLILGDLEGEAREVAKVHAGIARQVVLHGQPIAAPCVILSGGETTVTVRGNGRGGRNAEFLLALTEALQGLPGVYALAGDTDGIDGSEDNAGALMTPDSFARAEALGLRAADSLANNDGYGYFAALDGLIVTGPTRTNVNDFRAILILPSSD
>NZ_CP045416.1|WP_152481636.1|3344284_3345175_+|2-hydroxy-3-oxopropionate-reductase
MAKIGFIGTGIMGKPMAINLQKAGHQIFLSQHHDQAPAELTEAGAIGLANPQEVAQEAEFIIVMVPDTPQVEDVLFRADGVAAGVGAGKVVIDMSSISPTATKQFAEKIKATGAEYLDAPVSGGEVGAKAATLSIMVGGSEAAFERALPLFQAMGKTITRVGESGDGQTAKVANQIIVALNIQAVAEALLFAAKNGADPAKVREALMGGFAGSKILEVHGERMIKGTFDPGFRISLHQKDLNLALAGARELGLNLPNTANAQQVFSTCAAIGGSGWDHSALIKGLEHMANFSIRKE
>NZ_CP045416.1|WP_020308776.1|3343429_3344212_+|hydroxypyruvate-isomerase
MPRFAANLSMLFTEQDFMDRFAAAAQAGFSGVEYLFPYDFPAEQIKAQLDANKLTQVLFNLPAGDWAGGERGIAILPERVEEFRAGVDKAIAYAKVLGNTQVNCLAGIAPRGADLGQLEITFIENLRYAAQKLEEAGIRLVMEMINTRDIPRFFLNNTSQAQEIRGKVGHANLFLQYDIYHMQIMEGDLARTIENNLAAINHIQLADNPGRNEPGTGEINYRFLFEHLDRIGYQGWVGCEYKPATTTEAGLGWLKSHNAI
>NZ_CP045416.1|WP_152481635.1|3341469_3343251_+|glyoxylate-carboligase
MARMRAIDAAVAVLRKEGIDTAFGIPGAAINPLYSALRADGGIRHILARHVEGASHMAEGYTRAKPGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVLEPALVPRVFQQAFHVMRSGRPGPVLIDLPFDVQLAEIEFDVDTYEPLPVYKPAATRKQIEKAIDMLCAAERPLIVAGGGIYNAAAEALLVEFAETVGVPVIPTLMGWGSIPDDHPLMAGMCGLQTSHRYGNATLLESDFVLGIGNRWANRHTGSVETYTKGRTFVHVDIEPTQIGRVFAPDYGIVSDARAALELLVDVAKARKAKGRLPDRRAWAADCLERKRTMLRKTNFDSVPMKPQRVYQCMNNAFGKDTCYVSTIGLSQIAAAQFLHVYQPRHWINCGQAGPLGWTIPAALGVVAADPARKVVALSGDYDFQFMIEELAVGAQFKLPYLHILVNNAYLGLIRQAQRGFDMDYCVQLGFENINADQSGMEGYGVDHVAVVEGLGCKALRVFKQEDLRPAIEQAQAWMAEHRVPVVIEVILERVTNIAMGTEIDAINEFEALASCREDAPTAVGLLD
>NZ_CP045416.1|WP_152481633.1|3340308_3341217_-|LysR-family-transcriptional-regulator
MDRYTTLRSFVLVADCGSFAAAAHKENVTPVVMGRRLDALERHLGVKLMHRSTRGLSLTDLGEQYLDRARGLLKDFDEVDASISHDRTSVRGHLVVSAPAAFGRRHIGPHAPAFQARYPDLQLSFNFTDSVVDLVRHGYDMGIRIGEVTDPNYVAVRLFPNRRVVCGSPEYFARHGTPTTLEELTEHNCLAFNLQGGQQRGWTFLRDGRQVAIRVAGNLDCNDGELLFDWVKQGLGIGWRSTWEIQAELKRGELVTVLDEYALPAYDIQAVYPQQRYLPAKVRFFIDYLKDIYNAPGYWEVR
>NZ_CP045416.1|WP_125869074.1|3351818_3353012_+|nicotinate-phosphoribosyltransferase
MSSAFSERIIQSLLDTDFYKLTMMQAVLHHYPNAEVEWAFRSRSGEDLRPYLDAIREQIEALAELQMAPEELAYLERIPYMQPDFIRFLGLFRFDLRYLRLDVEDGELVIHLRGPWLHVILFEVPLLAIISEVRNRARYPQVSLTQARDRLDEKLAWLRSQAGEQELATFTLADFGTRRRFSFAVQEMVVERLRCDFPGRFVGTSNVHLARTLDVKPMGTMAHEWIMAHQQLGPRLIDSQIAALDCWVREYRGALGIALTDCITMDAFLRDFDLYFAKLFDGLRHDSGDPLVWAEKAIAHYRRLGIDPRTRQLIFSDGLDFAKALQIHRALAGRSNPSFGIGTGLTCDIPGVEPTNMVIKMTACNGQPVAKISDSPGKTMCRDEAFVGYLRHVFGLA
>NZ_CP045416.1|WP_152481642.1|3353060_3354257_-|diguanylate-cyclase
MPSLLDLLRNRLTTLLPSELRPSELRHLLDPRRHPVLLCQRRATLIVNRVRLFAFLFAVLTPLWSLIDLMVFEPKLWLALAGLRMMACLAFTGLLLFYRPSGNLLDAYRAIAILFAIPTAFYIASHTLLGSYQLAQFSAVVGAGYAFLPFVLMAGLTIFPLTLVENLVLSSLLLLAQALAGYLSWATLNWPSFAGAFWLLILIAGVASLASMSQLAFMIALVRQAIRDPLTGVFSRGSGEEILRLQWDSAQRKDSALALAFIDLDHFKSINDNYGHEAGDQVLREAARRLVATLRSSDSLLRWGGEEFLLIMPETDMEQAHKAIERIVGEGLGVRPDGLALTASIGLAERRDDQVDDYRDLLELADRRMYLAKTGGRNRLCAAESEKPQHQRALALES
>NZ_CP045416.1|WP_152481643.1|3354616_3356539_+|autotransporter-domain-containing-protein
MHSALKPLAAAVLLGCTTAVSAADSGPFSQFIVFGDSLSDAGNFPDLLSPTLGGNPTGGLRFTNRTGPTYGAGEYIGEVGTQRLASMLGLQSLPSTPLLPSVLTGNPDGSNYAVGGYRTDQILDSITDTSIVSAGGTTRTRPGYLVENPRVDRNALYYINGGGNDIFQLGSNPVTMAQAASNLVAGVGALQMAGARYIIVSDLPDVGITPLGANSGPVGAATLNALSDQFNIELASQLQAQGGNYVLVNNRLLLAEVRADLAAFGFDPNVAQTAVCFDPASSTSPCLPDPTYSLGGTAPDPSRLLFNDAVHPTTAVHQISADYLYSIISAPWEVSLLPEMGHSALRAHLQQLDSELAAQRGEWQAVGAWRTFVQGGYNRPEYDGYGGGDGHGLSLSLGATHRLSEAWLAGISLGLAENSLELGRSDSDYDMRSYLATAFARYEQHRLFADFSLSAGYLDYHDLQRTFALGITERAEKGDTEGTVWGAAAKVGFNLMQPGEQMQFGPFVGASYQKVEVDAYSEEGARSTALSYDDQDLDSLRLSLGLFGEYALSERTRLFGEVAREVEREDDDRRDLRMSLNSVPGNSFELPGATQTGDQTRFSIGVAHRLSPGLALRANYHYRGNDNRDHGVGLSLALDL
>NZ_CP045416.1|WP_152481644.1|3356601_3357498_-|ATPase
MRNDAHDELDNIPSLTAGRDRVEPYPAPDLEPIRRTPDDYGDDSRARQRRRPAGAAKASTAPLWVMVVALLISLAALGWWSYRQIAMLELQLVATQESFARISEDAAGRLQDISGKVVATESNVTTESEAVKLRIKQLEQQTQELARKQQAFATEQQSLTGRQGNQDQRLDEQGKRMESLTTDLQAQQGSSAALAETVKTLRSEQATLKSAVDEQSKLAARIDGLGKEVAALKQAGNQSQAISRLEQDILVLRSELENRPAPSANNTAEFDSFRAQVTRTINAMQGQIANLQGQIDGR
>NZ_CP045416.1|WP_110776142.1|3357859_3358132_+|hypothetical-protein
MELNKAVIDCMRALRRRLRDEQQLDIHLNQPDAVVAMLAASMRSNDELTRELGRQLAAFSDQLPPAPPPPARPANSGPAVRIYRGQRVLA
>NZ_CP045416.1|WP_152481645.1|3358140_3359031_-|ArgP/LysG-family-DNA-binding-transcriptional-regulator
MFDYKLLAALAAVVEQAGFERAAQALGLSQSAISQRIKLLEARVGQPVLLRDTPPRPTELGQRLLNHVQQVRLLERDLQGQVPALDENRLPERLRIALNADSLATWWAGAVAPFCAEHQVLLDHVVEDQAVGLKRMRAGEVAACVCAAERPVAGARSQFLGAMRYRALASPAFIERHFQLGANAADLARVPAVVFGPDDQLQHRYMSAVGGGEVFIHHLCPSSEGFVCMLRSGLGWGLAPELQVRGELARGELVDVLSGPPIDVPLYWHHWRNGGQLLDELTRHLVRCASDWLLVG
>NZ_CP045416.1|WP_152481646.1|3359123_3359732_+|LysE-family-transporter
MSAIWQSYINGLLVAAGLIMAIGAQNAFVLAQSLRREHHLPVAALCIVCDVLLVSVGVFGLAAVLASSPLLLEITRWGGVAFLLWYGTLALRRAARPQSLRSEDAQPRPLRAVLLAALAVTLLNPHVYLDTVVLIGTLGTQQPEPGAYTLGAASASTLWFLTLALGGAWLAPWLARPLTWRLIDLGVAAMMFAIAAQLAFAA
>NZ_CP045416.1|WP_152481647.1|3360125_3360707_+|superoxide-dismutase-[Fe]
MAFELPPLPYEKNALEPHMSAETLEYHHDKHHAAYVTNLNNLIPGTEFEGKDLESIIKTSSGGIFNNAAQVWNHTFFWNCLAPNAGGQPTGALADAINASFGSFDKFKEEFTKTAIGTFGSGWAWLVKKSDGSLGLASTIGAGNPMTAGDKPLLTCDVWEHAYYIDYRNARPKFVEAFWNLVNWDFVAKNFAG
>NZ_CP045416.1|WP_133456347.1|3360993_3363054_+|GGDEF-and-EAL-domain-containing-protein
MKLELRNSLSRKLLRIVLLSALAVGLVLSCAQIIFGAYKTRHLIEADAQRILRMTRDPSTQAIYSLDREMGAQVMEGLFQHESIRMASIGHPDEGMLALKIRPPIKLPTRWLTDPILGRDQQFSIPLVGKPPYNEYYGDLRITLDTAQYGQEFISDSVVIFIVGILRALTLGLILYLIYQWLLTRPLTKLIEHLAQINPDRPGAHKLPMIKGHEANELGLWVETANGLLASIEHNMHLRQQAESSLQRMTQYDSLTGLPNRQQLQRQLDHILDEARRLQRRIAVLCLGLDDFKGINEQYSYQAGDHLLKALADRLRDSGGRLGALARLGGDQFVLVLGGIEQPYEAAELAQELLDDLENPIELNGHLIRLRATIGITLYPEDGDSTEKLLQKAEQTMTLAKSRSRNRYQFYVASIDSEMRARRELEKDLSEALKRDEFHLVYQPQVDYQQNRIIGVEALIRWKHPQGKLVPPDLFIPLAEQNGSIIEIGRWVLDQACSQLRHWHALGYTGLRVAVNLSTVQLRHPQLPEMIGELLQAHQLPAETLELEVTETGLMEDIEAAAHNLHSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDIGQDEGATIVRAIIQLGKSLGMTVIAEGVETPEQEAYLIAEGCQEGQGYYYSKPLPARDLELLLRQSQPFDRAANSELR
>NZ_CP045416.1|WP_110776139.1|3363208_3364102_-|hypothetical-protein
MDFAQVFSLVAAGALAVGGAGLSIGRWARARHLLDTPTSRIRSAAQGYVELVGILRELAVPQPVAPLTGEQCLWWRYRIEEYRSNGKRSSWRVVERGVSDAWLRLADATGECLIDPRGAEVHPAFRRVWTGDLRHPRGTAPSGWLSLFAGSKRYRYTEERLHEGEPLYAIGDFRTSGGGRQGLDLDAARREVIRHWKGDFAGLLQRFDSNADGVLDEQEWRRVQLAATLEAEDQHRQRSAVPERHQLSRPQEALPFVLSSHGEEVLARRFYWQAAGGVLMCLAGALWLASQLGVDGW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

52945 : 63840

Bacillus_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152480594.1\|52945_55825_-	CHASE3 domain-containing protein	W8CYF6	Bacillus_phage	1.4e-28	34.3
WP_152480595.1\|55957_57595_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.8e-18	34.9
WP_152480596.1\|57587_57974_-	response regulator	W8CYM9	Bacillus_phage	7.4e-10	33.9
WP_152480597.1\|57973_60385_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	5.4e-26	35.5
WP_110778587.1\|60460_60847_-	response regulator	W8CYM9	Bacillus_phage	3.5e-12	35.0
WP_152480598.1\|60891_63840_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	4.0e-23	27.8

DBSCAN-SWA_2

91107 : 99589

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063540329.1\|91107_92022_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.4e-27	34.5
WP_063540330.1\|92018_92564_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.4
WP_063540331.1\|92560_93433_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.2
WP_063540332.1\|93429_94500_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	3.1e-98	53.6
WP_081253729.1\|94777_95722_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.3e-19	38.7
WP_152480603.1\|95718_96846_-	ABC transporter permease	NA	NA	NA	NA
WP_152480604.1\|96847_99589_-	ribosome-associated ATPase/putative transporter RbbA	A0A2H4PQG7	Staphylococcus_phage	4.4e-24	32.7

DBSCAN-SWA_3

634350 : 691933

Burkholderia_virus(11.11%)

transposase,integrase

attL 660857:660873|attR 697826:697842

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611849.1\|634350_635573_-\|transposase	IS3-like element ISPst4 family transposase	Q8W6R2	Burkholderia_virus	5.8e-117	75.8
WP_152480784.1\|636022_637834_+	hypothetical protein	NA	NA	NA	NA
WP_152480785.1\|637830_638478_+	hypothetical protein	NA	NA	NA	NA
WP_152480786.1\|638652_640758_+	hypothetical protein	NA	NA	NA	NA
WP_152480787.1\|641094_641451_+	H-NS histone family protein	NA	NA	NA	NA
WP_152480788.1\|641504_641906_-	transcriptional regulator	NA	NA	NA	NA
WP_152480789.1\|642152_642905_+	hypothetical protein	NA	NA	NA	NA
WP_152480790.1\|644854_645799_+	chromate resistance protein	NA	NA	NA	NA
WP_152480791.1\|645791_647156_+	chromate efflux transporter	A0A219VHC2	Ochrobactrum_phage	5.6e-28	64.0
WP_152480792.1\|647166_647493_+	sulfurtransferase	NA	NA	NA	NA
WP_081262884.1\|647529_648255_-	conjugal transfer protein TraX	NA	NA	NA	NA
WP_042924888.1\|648242_648683_-	DedA family protein	NA	NA	NA	NA
WP_152480793.1\|648686_649820_-	nickel/cobalt efflux transporter RcnA	NA	NA	NA	NA
WP_152480794.1\|649832_650120_-	metal-sensing transcriptional repressor MreA	NA	NA	NA	NA
WP_152480795.1\|650237_650597_+	hypothetical protein	NA	NA	NA	NA
WP_152480796.1\|650644_651382_+	HupE/UreJ family protein	NA	NA	NA	NA
WP_152480797.1\|651394_652057_+	transmembrane anchor protein	NA	NA	NA	NA
WP_152480798.1\|652544_653312_-	NYN domain-containing protein	A0A2P0VNQ4	Tetraselmis_virus	8.9e-07	28.9
WP_031642939.1\|653642_654671_-\|transposase	IS30-like element ISPsp7 family transposase	W5R8L2	Staphylococcus_phage	4.1e-47	36.5
WP_003282265.1\|655114_656110_+\|transposase	IS5-like element ISPsp6 family transposase	E5E3P6	Burkholderia_phage	8.3e-98	58.9
WP_041014138.1\|656346_656688_-	DUF45 domain-containing protein	NA	NA	NA	NA
WP_034032494.1\|656686_657886_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_041014139.1\|658977_659616_+	AAA family ATPase	K7R2R7	Vibrio_phage	2.5e-31	36.7
WP_034032526.1\|659612_659885_+	hypothetical protein	NA	NA	NA	NA
WP_041014140.1\|659881_660415_+	DUF2840 domain-containing protein	NA	NA	NA	NA
WP_041014141.1\|660411_661008_+	S26 family signal peptidase	NA	NA	NA	NA
660857:660873	attL	NA	NA	NA	NA
WP_041014142.1\|661468_663460_+	relaxase/mobilization nuclease and DUF3363 domain-containing protein	NA	NA	NA	NA
WP_020750883.1\|663568_663967_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_020750882.1\|663966_664962_+	M56 family metallopeptidase	NA	NA	NA	NA
WP_003111094.1\|665102_666350_+	TolC family protein	NA	NA	NA	NA
WP_003111093.1\|666346_667576_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_041014144.1\|667586_670727_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_041014167.1\|673161_673497_-	hypothetical protein	NA	NA	NA	NA
WP_158525227.1\|673505_674204_-	N-6 DNA methylase	NA	NA	NA	NA
WP_041014169.1\|674184_674562_-	hypothetical protein	NA	NA	NA	NA
WP_172974154.1\|676081_676234_+	hypothetical protein	NA	NA	NA	NA
WP_152480799.1\|676223_676940_+	DUF45 domain-containing protein	NA	NA	NA	NA
WP_085989276.1\|677077_678227_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.1e-98	64.1
WP_152480800.1\|678285_678867_+	lecithin retinol acyltransferase family protein	NA	NA	NA	NA
WP_152480801.1\|679005_679413_+	hypothetical protein	NA	NA	NA	NA
WP_152482044.1\|679628_679838_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_096780445.1\|679907_680114_-	hypothetical protein	NA	NA	NA	NA
WP_096780446.1\|680586_680937_+	hypothetical protein	NA	NA	NA	NA
WP_041014175.1\|681021_681462_+	S24 family peptidase	NA	NA	NA	NA
WP_152480802.1\|681458_682733_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	7.6e-104	47.2
WP_152480803.1\|682910_683948_+	hypothetical protein	NA	NA	NA	NA
WP_152480804.1\|684001_686167_-	AAA family ATPase	A0A0K2FLP8	Brevibacillus_phage	2.9e-39	27.0
WP_042928085.1\|686163_686637_-	hypothetical protein	NA	NA	NA	NA
WP_152480805.1\|686623_687292_-	hypothetical protein	NA	NA	NA	NA
WP_152480806.1\|687288_690525_-	hypothetical protein	NA	NA	NA	NA
WP_152482045.1\|690517_691933_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
697826:697842	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2005647 : 2019437

uncultured_Caudovirales_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152481236.1\|2005647_2008182_+	pyrroloquinoline quinone biosynthesis protein PqqF	A0A1V0SJA4	Klosneuvirus	8.3e-17	22.3
WP_063543182.1\|2008431_2009619_+	porin	NA	NA	NA	NA
WP_152481237.1\|2009944_2011108_+	FIST C-terminal domain-containing protein	NA	NA	NA	NA
WP_152481238.1\|2011037_2013677_+	PAS-domain containing protein	A0A2K9L5I4	Tupanvirus	5.8e-13	28.0
WP_152481239.1\|2013733_2014729_-	glutathione S-transferase C-terminal domain-containing protein	NA	NA	NA	NA
WP_152481240.1\|2014813_2015797_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.7e-143	75.2
WP_125872677.1\|2015793_2016126_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	4.5e-40	74.3
WP_152481241.1\|2016122_2016425_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.7e-25	61.0
WP_152481242.1\|2016424_2016784_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	4.9e-32	60.0
WP_110778992.1\|2016783_2017176_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.6e-47	71.3
WP_152481243.1\|2017390_2018659_+	MFS transporter	NA	NA	NA	NA
WP_003284506.1\|2018768_2019437_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.2e-87	77.6

DBSCAN-SWA_5

2180945 : 2248637

Brazilian_cedratvirus(25.0%)

integrase

attL 2184398:2184412|attR 2249073:2249087

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_028688847.1\|2180945_2182064_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_023628979.1\|2182181_2183171_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_071576115.1\|2183469_2183754_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023048077.1\|2184106_2184778_-	hypothetical protein	NA	NA	NA	NA
2184398:2184412	attL	NA	NA	NA	NA
WP_023048078.1\|2184774_2185590_-	dioxygenase	NA	NA	NA	NA
WP_023048079.1\|2186052_2186952_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023048080.1\|2187114_2187471_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_023628975.1\|2187565_2188360_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_023048084.1\|2189134_2189539_-	DoxX family protein	NA	NA	NA	NA
WP_023048085.1\|2189622_2190252_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_023048086.1\|2190355_2191300_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023048087.1\|2191339_2191537_-	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_023048089.1\|2192440_2193595_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_023048090.1\|2193656_2194523_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_023628973.1\|2194759_2195545_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_023048092.1\|2195548_2197090_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_023048093.1\|2197099_2198302_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_023048094.1\|2198328_2199567_+	CoA transferase	NA	NA	NA	NA
WP_023048095.1\|2199623_2200388_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_023662939.1\|2200388_2201333_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_041506134.1\|2201979_2203341_+	allantoin permease	NA	NA	NA	NA
WP_031637015.1\|2203494_2204667_+	hypothetical protein	NA	NA	NA	NA
WP_052062200.1\|2205166_2206540_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_023662937.1\|2206840_2208586_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_023662936.1\|2208621_2210712_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_103470364.1\|2210809_2211769_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_023048102.1\|2212146_2212866_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_023628647.1\|2213058_2214036_+	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_023048104.1\|2214120_2215350_+	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_023048105.1\|2215588_2216956_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_063542906.1\|2217065_2218517_+	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_023048107.1\|2219641_2220550_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_023048108.1\|2220546_2221305_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	7.4e-14	28.0
WP_024075421.1\|2221304_2222021_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-14	26.0
WP_024075420.1\|2222038_2222953_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.4e-14	38.9
WP_023630205.1\|2223321_2224773_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_078451698.1\|2224995_2226072_-	DUF2955 domain-containing protein	NA	NA	NA	NA
WP_023663266.1\|2226061_2227123_-	HlyD family secretion protein	NA	NA	NA	NA
WP_023629250.1\|2227270_2228206_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023629249.1\|2228362_2228590_+	DUF2790 domain-containing protein	NA	NA	NA	NA
WP_023629248.1\|2228663_2229566_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024075419.1\|2229693_2230983_+	salicylate 1-monooxygenase	NA	NA	NA	NA
WP_023629719.1\|2231056_2232403_+	aromatic acid/H+ symport family MFS transporter	NA	NA	NA	NA
WP_028688854.1\|2233181_2234474_-\|integrase	integrase	NA	NA	NA	NA
WP_063542901.1\|2234918_2235752_+	CoA ester lyase	NA	NA	NA	NA
WP_152481286.1\|2236346_2236553_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_063542897.1\|2236655_2237246_+	hypothetical protein	NA	NA	NA	NA
WP_063542895.1\|2237242_2238643_+	DEAD/DEAH box helicase family protein	I4AZM6	Saccharomonospora_phage	8.6e-40	32.5
WP_063542891.1\|2238733_2239036_+	hypothetical protein	NA	NA	NA	NA
WP_063542887.1\|2239434_2240037_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_152481287.1\|2240718_2241807_-	alanine racemase	NA	NA	NA	NA
WP_063542883.1\|2241867_2243166_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_081253783.1\|2243534_2243894_-	FCD domain-containing protein	NA	NA	NA	NA
WP_073865966.1\|2244289_2245246_-\|integrase	integrase	NA	NA	NA	NA
WP_160328792.1\|2245923_2247093_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_034054167.1\|2247092_2248637_+\|integrase	site-specific integrase	NA	NA	NA	NA
2249073:2249087	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3004377 : 3013371

uncultured_virus(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063539761.1\|3004377_3005430_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	3.0e-05	28.5
WP_152482086.1\|3005433_3006039_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_152481534.1\|3006105_3006630_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	3.0e-06	26.2
WP_152481535.1\|3006792_3007542_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_152481536.1\|3007691_3009467_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	8.7e-13	27.8
WP_011913917.1\|3009813_3010284_+	DNA starvation/stationary phase protection protein	A0A2H4N7L5	Lake_Baikal_phage	1.1e-20	36.4
WP_169917672.1\|3010909_3011137_+	cold shock domain-containing protein	A0A1X9IGI9	Lactococcus_phage	6.7e-11	50.0
WP_014597223.1\|3011182_3011389_-	SlyX family protein	NA	NA	NA	NA
WP_063539756.1\|3011391_3011814_-	HIT domain-containing protein	NA	NA	NA	NA
WP_076611849.1\|3012148_3013371_-\|transposase	IS3-like element ISPst4 family transposase	Q8W6R2	Burkholderia_virus	5.8e-117	75.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045416

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection