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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045425 Bacillus subtilis strain JAAA chromosome, complete genome 3 crisprs TnsE_C,csa3,cas3,DEDDh,WYL,DinG 0 1 18 0
NZ_CP045426 Bacillus subtilis strain JAAA plasmid unnamed1 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP045425
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045425_1 903621-903730 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045425_2 3109192-3109299 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045425_3 3709153-3709261 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045425_2 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder 3109216-3109275 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
NZ_CP045425_2 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder 3109216-3109275 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
NZ_CP045425_2 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder 3109216-3109275 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
NZ_CP045425_2 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder 3109216-3109275 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
NZ_CP045425_2 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder 3109216-3109275 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
NZ_CP045425_2 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder 3109216-3109275 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
NZ_CP045425_2 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder 3109216-3109275 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
NZ_CP045425_2 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder 3109216-3109275 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
NZ_CP045425_2 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder 3109216-3109275 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|3109216|60|NZ_CP045425|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 521391 : 556598 32 Gordonia_phage(33.33%) protease,transposase NA
DBSCAN-SWA_2 685526 : 693892 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 1185998 : 1229976 50 Planktothrix_phage(50.0%) tRNA,coat NA
DBSCAN-SWA_4 1262508 : 1330964 75 Bacillus_phage(28.57%) coat,terminase,plate,portal,holin NA
DBSCAN-SWA_5 1764276 : 1826200 60 Bacillus_phage(58.82%) tRNA,protease,transposase,coat NA
DBSCAN-SWA_6 1846083 : 1886061 37 Bacillus_phage(33.33%) integrase,coat,transposase attL 1846983:1846997|attR 1870302:1870316
DBSCAN-SWA_7 2047870 : 2061163 12 Bacillus_phage(90.0%) transposase NA
DBSCAN-SWA_8 2077287 : 2161629 120 Bacillus_phage(93.88%) integrase,transposase attL 2102805:2102864|attR 2133099:2133220
DBSCAN-SWA_9 2166919 : 2178677 19 Bacillus_phage(85.71%) integrase attL 2170737:2170751|attR 2181968:2181982
DBSCAN-SWA_10 2186405 : 2196519 10 Bacillus_phage(100.0%) holin NA
DBSCAN-SWA_11 2341514 : 2347610 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_12 2584888 : 2646062 74 uncultured_Caudovirales_phage(27.27%) transposase,terminase,portal,tail,holin,capsid NA
DBSCAN-SWA_13 2649845 : 2684431 37 Gordonia_phage(25.0%) protease,coat,transposase NA
DBSCAN-SWA_14 3069742 : 3100547 33 Staphylococcus_phage(25.0%) holin,coat,transposase NA
DBSCAN-SWA_15 3120882 : 3173529 74 uncultured_Caudovirales_phage(39.02%) transposase,integrase,head,portal,terminase,tail,holin attL 3110709:3110726|attR 3173690:3173707
DBSCAN-SWA_16 3437945 : 3468119 32 Thermus_phage(28.57%) holin,transposase NA
DBSCAN-SWA_17 3809823 : 3880704 66 Bacillus_phage(18.75%) tRNA,coat,transposase,bacteriocin,protease NA
DBSCAN-SWA_18 3894559 : 3939127 40 Bacillus_phage(33.33%) holin,protease,lysis,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage