CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP035207	Klebsiella quasipneumoniae strain TH114 chromosome, complete genome	1 crisprs	csa3,DEDDh,DinG,cas3,WYL	7
NZ_CP035208	Klebsiella quasipneumoniae strain TH114 plasmid pTH114-3, complete sequence	0 crisprs	NA	6
NZ_CP035209	Klebsiella quasipneumoniae strain TH114 plasmid pTH114-1, complete sequence	0 crisprs	RT	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP035207_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035207_1

3388844-3388961

Orphan

Consensus_repeat	Method
TCCCCGGTGGCGCTGCGCTTACCGGGGTTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035207_1

>merge|NZ_CP035207|1|3388844-3388961|CRISPRCasFinder
TCCCCGGTGGCGCTGCGCTTACCGGGGTTACAAACCGGAGCTGACGAGTAGCCCGGATAAGGCGCCAGCCGCTATCCGGAAATATCTCCCCGGTGGCGCTGCGCTTACCGGGGCTACA

>NZ_CP035207|1|1|3388844-3388961|CRISPRCasFinder
TCCCCGGTGGCGCTGCGCTTACCGGGGTTACA	AACCGGAGCTGACGAGTAGCCCGGATAAGGCGCCAGCCGCTATCCGGAAATATC
TCCCCGGTGGCGCTGCGCTTACCGGGGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035207.1\|WP_002886707.1\|3384879_3385086_-\|DUF1107-domain-containing-protein	unknown	unknown	gnl\|CDD\|368954
NZ_CP035207.1\|WP_017900585.1\|3385957_3386701_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|182848
NZ_CP035207.1\|WP_117124969.1\|3390365_3391190_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP035207.1\|WP_032456893.1\|3382461_3383100_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|234604
NZ_CP035207.1\|WP_152651603.1\|3375066_3376254_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035207.1\|WP_023319575.1\|3391265_3392237_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP035207.1\|WP_004206465.1\|3395635_3396310_+\|opacity-associated-protein	unknown	unknown	gnl\|CDD\|225603
NZ_CP035207.1\|WP_000135199.1\|3396909_3397137_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP035207.1\|WP_048322753.1\|3392319_3392982_+\|iron-sulfur-cluster-repair-protein-YtfE	unknown	unknown	gnl\|CDD\|236812
NZ_CP035207.1\|WP_004206478.1\|3385410_3385968_+\|YtfJ-family-protein	unknown	unknown	gnl\|CDD\|225596
NZ_CP035207.1\|WP_004206464.1\|3396418_3396868_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP035207.1\|WP_152651606.1\|3386892_3388836_+\|2',3'-cyclic-nucleotide-2'-phosphodiesterase	unknown	unknown	gnl\|CDD\|236506
NZ_CP035207.1\|WP_004206485.1\|3383280_3384618_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP035207.1\|WP_023319577.1\|3389438_3390287_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187578
NZ_CP035207.1\|WP_152651604.1\|3376745_3380522_-\|autotransporter-assembly-complex-protein-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_CP035207.1\|WP_004206470.1\|3393086_3394490_-\|D-serine/D-alanine/glycine-transporter	unknown	unknown	gnl\|CDD\|236830
NZ_CP035207.1\|WP_002886687.1\|3394795_3395416_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|183207
NZ_CP035207.1\|WP_004206475.1\|3388976_3389348_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|334619
NZ_CP035207.1\|WP_002886724.1\|3376398_3376743_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|225016
NZ_CP035207.1\|WP_152651605.1\|3380518_3382252_-\|autotransporter-assembly-complex-protein-TamA	unknown	unknown	gnl\|CDD\|223801

Protein	Function_ID	Function_description	E-value
NZ_CP035207.1\|WP_002886707.1\|3384879_3385086_-\|DUF1107-domain-containing-protein	gnl\|CDD\|368954	pfam06526, DUF1107, Protein of unknown function (DUF1107). This family consists of several short, hypothetical bacterial proteins of unknown function.	1.17218e-28
NZ_CP035207.1\|WP_017900585.1\|3385957_3386701_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|182848	PRK10931, PRK10931, adenosine-3'(2'),5'-bisphosphate nucleotidase; Provisional.	0
NZ_CP035207.1\|WP_117124969.1\|3390365_3391190_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.05044e-26
NZ_CP035207.1\|WP_032456893.1\|3382461_3383100_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|234604	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA.	1.68026e-154
NZ_CP035207.1\|WP_023319575.1\|3391265_3392237_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.46072e-13
NZ_CP035207.1\|WP_004206465.1\|3395635_3396310_+\|opacity-associated-protein	gnl\|CDD\|225603	COG3061, OapA, Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane].	1.69602e-55
NZ_CP035207.1\|WP_000135199.1\|3396909_3397137_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	1.93012e-37
NZ_CP035207.1\|WP_048322753.1\|3392319_3392982_+\|iron-sulfur-cluster-repair-protein-YtfE	gnl\|CDD\|236812	PRK10992, PRK10992, iron-sulfur cluster repair protein YtfE.	3.25487e-155
NZ_CP035207.1\|WP_004206478.1\|3385410_3385968_+\|YtfJ-family-protein	gnl\|CDD\|225596	COG3054, COG3054, Predicted transcriptional regulator [General function prediction only].	2.35528e-109
NZ_CP035207.1\|WP_004206464.1\|3396418_3396868_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	1.29932e-66
NZ_CP035207.1\|WP_152651606.1\|3386892_3388836_+\|2',3'-cyclic-nucleotide-2'-phosphodiesterase	gnl\|CDD\|236506	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase.	0
NZ_CP035207.1\|WP_004206485.1\|3383280_3384618_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.03468e-149
NZ_CP035207.1\|WP_023319577.1\|3389438_3390287_+\|SDR-family-oxidoreductase	gnl\|CDD\|187578	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs. TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.10369e-103
NZ_CP035207.1\|WP_152651604.1\|3376745_3380522_-\|autotransporter-assembly-complex-protein-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP035207.1\|WP_004206470.1\|3393086_3394490_-\|D-serine/D-alanine/glycine-transporter	gnl\|CDD\|236830	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional.	0
NZ_CP035207.1\|WP_002886687.1\|3394795_3395416_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|183207	PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional.	1.23653e-146
NZ_CP035207.1\|WP_004206475.1\|3388976_3389348_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|334619	pfam01638, HxlR, HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.	2.81672e-41
NZ_CP035207.1\|WP_002886724.1\|3376398_3376743_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|225016	COG2105, COG2105, Uncharacterized conserved protein [Function unknown].	1.35617e-37
NZ_CP035207.1\|WP_152651605.1\|3380518_3382252_-\|autotransporter-assembly-complex-protein-TamA	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	0

>NZ_CP035207.1|WP_152651606.1|3386892_3388836_+|2',3'-cyclic-nucleotide-2'-phosphodiesterase
MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEVKNSVLVDNGDVIQGSPLGDYMAAKGLKEGDVHPVYKAMNTLNYAVGNLGNHEFNYGLDFLHKALAGAKFPYVNANIIDAKTGKPLFTPYLIKDTPVQDSEGQSHTLRIGYIGFVPPQIMTWDKANLSGKVTVNDITETARKYIPEMRAKGADVVVVVAHSGLSADPYQAMAENSVYYLSQVPGVDAIMFGHAHAVFPGKDFANIKGADIARGTLNGVPAVMPGMWGDHLGVVDLVLNNDSGKWQVTQSKAEARPIYDAVAKKSLADEDGKLVAVLKADNDATREFVSKPIGKSADNMYSYLALVQDDPTVQVVNMAQKAYVEHYIQGDPDLAKLPVLSAAAPFKVGGRKNDPASFVEVEKGQLTFRNAADLYLYPNTLVVMKVSGKEVKEWLECSAGQFNQIDPASSKPQSLINWDGFRTYNFDVIDGVNYQIDVTQPARYDGECQMIHPQAERIKHLTFNGKPVDPQATFLVATNNYRAYGGKFAGTGESHIAFASPDENRSVLAAWIGAQSKKDGAIHPAADNNWRLAPIHSKTPLDIRFETSPGDKAAAFIKEKAQYPMRQVATDDIGFAIYQLDLSQ
>NZ_CP035207.1|WP_017900585.1|3385957_3386701_-|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MLEQVCQLARNAGDAIMEVYDGNQPINVASKKDDSPVTAADIAAHKVIVSGLQALDATIPILSEEDPPAWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNIALIENGKPTLGVVYAPVMKVMYSAEKGKAWKEECGVRKQIQVRDARPPLVVISRSHGNDPELQEYLEQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTSTWDTAAGHAVAVAAGAHVHDWQGKTLDYTPRESFLNPGFRVSIY
>NZ_CP035207.1|WP_004206478.1|3385410_3385968_+|YtfJ-family-protein
MTLRSILAASLLLVPLLASAHNFVDGQRVAPVGVADRGELILDNDKFSYKNWNSSQLAGKVRVVQHIAGRSSAKEKNANLIEAIKAAGFPHDRYQTTTIVNTDDAIPGTGMFVRNSIESNKKLFPWSQFIVDSNGLVRKAWQLDEKSSAIVVLDKSGRIQWAKDGALTQQEVQQVIDLLHKLLNK
>NZ_CP035207.1|WP_002886707.1|3384879_3385086_-|DUF1107-domain-containing-protein
MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKVKDKLHLSVMSEVNRQVLRLQTEMA
>NZ_CP035207.1|WP_004206485.1|3383280_3384618_+|HlyC/CorC-family-transporter
MLNSILVILCLIAVSAFFSISEISLAASRKIKLKLLADEGNVNAQRVLKMQENPGTFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLLSGYLSPELSEQLSFIISFTLVTSLFILFADLTPKRIGMIAPETVALRIINPMRFCLLVFRPLVWLFNGMANMIFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRESVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLVLTGGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRKIPKRTDAVKFSGYKFEVVDIDNYRIDQLLVTRIDNKPTVLVPKQAEAAESQNA
>NZ_CP035207.1|WP_032456893.1|3382461_3383100_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MSLFDKTHLVAQADALPGRNTPMPVATLHAVNGHSMTNVPAGMEVALFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGQTGHAEAVRVVYDPQVISYEQLLQVFWENHDPAQGMRQGNDLGTQYRSAIYPLTPEQTEAAKASLARFQAAMNDAHDTRHITTEIATAKPFYYAEDDHQQYLYKNPHGYCGIGGIGVCLPPQA
>NZ_CP035207.1|WP_152651605.1|3380518_3382252_-|autotransporter-assembly-complex-protein-TamA
MLKIRQLCVTSLLLVSGVASAANVRLQVEGLSGELEKNVRAQLSTIQSDEVTPDRRFRARVDDAIREGLKALGYYEPTIEFDLRPPPKRGRQVLIAKVTPGEPVRIGGTEVILRGGARTDSDYLALLKTRPAIGTVLNHGDYDGFKSSLTRVALRKGYFDSEFNKSQLGVSLDRHQAFWDIDYDSGERYRFGHVTFSGSQIRDEYLQNLVPFKEGDYYTSQNLAELNRRLAATGWFSSVVVAPDFAKSRKTKVLPLQGVVSPRKENTVETGVGYSTDVGPRVKATWKKPWMNSYGHSLTSSVSLSAPEQQFDFTYKVPLLKSPLEQYYLMQGGFKRTDLNDTQADSTTLGLSRFWEMSSGWQRAINLRWSLDHFTQANVTNTTMLIYPGVSVNRTRSRGGLMPTWGDSQRYSVDYSNTMWGSDINFIVMQAQDVWIRTLYDRHRFVVRGNLGWIEADNFDKVPPDLRFFAGGDRSIRGYKYKSISPKDDDGKLIGASKLATGSLEYQYNVSGKWWGAVFVDSGEAVSDIRESDFKTGAGVGVRWQSPVGPIKLDIARPIGDKEEHGLQFYIGLGPEL
>NZ_CP035207.1|WP_152651604.1|3376745_3380522_-|autotransporter-assembly-complex-protein-TamB
MSLWKKISLGVLIVLVLLLGTVGFLVGTTTGLHLVFKAADRWVPGLEIGKVTGGWRDLTLDNVRYEQPGVAVTAGQFHLSVRLRCLWDSSLCVNDISLRDIYVAVDTKKMPPSAPVEEEDSGPLNLSTPYPIALSRVALHNVNVKIDDTAVSVRDFSTGLNWQEKNLTLTPTSLQGLLIALPKVAKVAQEQVVEPKIDNPRPQEKPLGETMTDLFSQPVLPAMTDVHLPLNLNIQAFRGEQLRLTGDTDITVYNLLLKVSSIDGQMKLDALDIDSDQGKVSASGSAQLQDNWPVDITLAGTLNVDPMKGEKVQLKVGGEIRKTLKVGVDLSGPVAATLRADAQLAEAGLPLNMELKSKQLAWPFSGEKQFQADDVQLKFSGKMTDYALAFSTAVKGQSLPPAKIALNAKGNERQINLDKLTVNALEGKTELKALLDWQQAISWRGELTLDGINTAKEVPDWPSKLNGRIKTQGSLYGGSWQMSVPELKITGNVKQNKVDVSGSLQGNSYLQWKIPGLHLALGPNSADIKGELGVKDLNLDATIDAPHLDNALPGLGGTAKGLVKVRGTVDAPQLLADITARALRWQELTIAQVNVKGDVKSTDQIGGNLDVRVDRISQPGVNISLVQLNAKGTEKQHELRLRVQGDPVSGQLALAGSFDRQAERWRGALSDTRFQTPVGPVALTRSIALDYRNQEQKISIGPHCWTNPNAELCVPETIDAGASGRARVNLNRFDLAMLKPFMPEATQASGVFTGNADVSWDTTKEGLPQGKVTLRGRNVKVTQVVNDAPLPVAFDTLNLSADLHNNRAELGWLIRLTNNGQLDGQVQVTDPQGRRNLGGNVNISNFSLAMINPIFARGEKAEGRLNARLRLGGNVKSPQLFGQMQLSGVDIDGNFMPFDMQPSQLAMNFNGTRSTLQGTVNTRQGQIALSGNADWTQIDNWRAQIAAKGSRVRITVPPMVRLDVSPDVMFTATPSLFNLDGKVDVPWARIVVNEVPESAVGVSSDEVMLDKNLKPINQQSAGIPINSNLTIHVGNNVRLEAFGLKARLTGDLKVAQDKQGLGLNGQINIPDGRFHAYGQDLIVRKGELLFSGPPDQPLLNIEAIRNPDATEDDVIAGVRVTGSADQPKAEIFSDPVMSQQEALSYLLRGQGLSSGQSDSAAMTSMLIGMGVAQSGQVVGKIGETFGVSNLALDTEGVGDSSQVVVSGYVLPGLQVKYGVGIFDSLATLTLRYRLMPKLYVEAVSGIDQALDLLYQFEF
>NZ_CP035207.1|WP_002886724.1|3376398_3376743_-|gamma-glutamylcyclotransferase
MRIFVYGSLRRKQGNSHWMTNAQWLGAHSVDDYQLYSLGHYPGAVPGEGTVHGEVYRIDASTLAELDALRTKGGEYARHLIQTPYGSAWMYVYQRSVEGCTLIANGNWLDRDQY
>NZ_CP035207.1|WP_152651603.1|3375066_3376254_+|hypothetical-protein
MKSVRYFTLNFSGFTTAASEKQGYLRLIAGEHVFYTDKRYFNDPALFDRLKINQPLHLGARRLDNGSYWIHWLSDGETLLEPDRQTKRWARPLLFISLLTLIVTLIPLLVSASEWGRFGCGIIAILAFIALLTGLYERLFHPALKRHPAMRDLLAKMAMARRRDVSFCQPLPATTQALRQSAMPFTQALPERYAAQADIITDTHFKKWYAGNPTREYHGLGIQCGSLPLAFWWQAGCANFALHPVFYRRQPPFLATGDRILAVYERDSRAIHALYNASDGAAYIKNHPLYPGRRQLSLLYYLFYGLALVMYLLFLGVELVSALQSGRRVWWQVQDSLDMLSLLLVCFGGVLAVLELIGPTAWLLSHRVADWLKLRSAMRRYLRGAAPPTTLEEVM
>NZ_CP035207.1|WP_004206475.1|3388976_3389348_-|winged-helix-turn-helix-transcriptional-regulator
MAEPTLSEKLRNGNLFAEQCPSRDVLKHVTSRWGVLILVALREGTHRFSDLRRKMGGVSEKMLAQSLQALEQDGFIDRVSYPVVPPHVEYSLTPLGLQVSEKVAALADWIEVNLPAVLASHEE
>NZ_CP035207.1|WP_023319577.1|3389438_3390287_+|SDR-family-oxidoreductase
MIALTGATGQLGHYVLQDLLKTVPAGQIVAIVRNPAKAQTLSQQGVVVRQADYSDEAALTAALQGVDKLLLISSSEVGQRAVQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLAAEHIATEQMLADSGIAYTLLRNGWYTENYLASAPPALEHGVFIGAAGEGKIASATRADYAAAAARVIAGEGHAGKVYELAGDNAWTLSDLAAELSKQSGKNVVYQNLSEADFAAALKSVGLPAGLADMLADSDVGASKGGLFDDSRTLSTLIGRPTTSLAESVKGIL
>NZ_CP035207.1|WP_117124969.1|3390365_3391190_+|AraC-family-transcriptional-regulator
MQGVPPQFSDEKDRARFRHLEQLPGVELYHAHISRYAFEPHTHEAFGIGVIEQGAERFRYRGSQHIAAANAIVTMNPDELHTGEAETADGWRYRMIYLEPDRLEAITGVRDWWFSEVVREDPLRSRRIGQLIYGLWHSEDALVQQGMLLDLIDTFRPLAHHASAQGEAGHRFDRVRDYLHDNYMRPITLDELAQVAALSPYHFQRQFKAHYHVTPHQMLMAIRLWRAKAFLTHGMPAAEVAIAVGLTDQSHLTRTFTQRYGITPVRYQKQVARR
>NZ_CP035207.1|WP_023319575.1|3391265_3392237_+|DMT-family-transporter
MISGVLYALLAGLMWGLIFVGPLLVPEYPAMLQSMGRYLALGLIALPLAWLGRARLRQLSRNDWWTALGLTMMGNLIYYVCLASAIQRTGAPVSTMIIGTLPVVLPVFANLLYSQRDGKLPWRRLFPALVCIAVGLICVNVAELRQGLPDFSPWRYGSGIALALGSVVCWAWYALRNARWLRENPHQPPMMWATAQALVTLPVSLAGYLAACAWLHGQQAGFPLPFGPRPAVFITLMLAIAVLCSWVGALCWNIASQRLPTVILGPLIVFETLAGLLYTFLLRQSLPPLLTLSGILLLVLGVVSAVRARPDKPTLQPLTNEKK
>NZ_CP035207.1|WP_048322753.1|3392319_3392982_+|iron-sulfur-cluster-repair-protein-YtfE
MAFRDQPLGELALTIPRASALFRQYDMDYCCGGKQTLARAASRKALDVAVIEAELEKLAGEPITRDWRAAPLAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKPNVPKGLTKYLTMLQQELSSHMMKEEQILFPMIKQGMGAQAGGPIGVMESEHDEAGELLEVIKHITHNVTPPPEACTTWKAMYNGINEMIDDLMEHISLENNVLFPRALAGK
>NZ_CP035207.1|WP_004206470.1|3393086_3394490_-|D-serine/D-alanine/glycine-transporter
MVDQVKVAAIEQEPTEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFAADLLGPWAGYFTGWTYWFCWVVTGMADVVAITAYAQFWFPGLSDWVASLAVILLLLGLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVMMHFKSPTGVEASFAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPLRIIMFYVFALIVIMSVTPWSSVVPSKSPFVELFVLVGLPAAASLINFVVLTSAASSANSGVFSTSRMLFGLAQDGQAPKMFAKLSKRAVPAKGLTFSCMCLLGGVVMLMVNPSVIAAFTMITTVSAILFMFVWTIILCSYLVYRKKRPQLHEKSKYKMPLGKLMCWVCMAFFVFVLVLLTLEDDTREALMVTPLWFVLLGAGWLFAGKKRLAK
>NZ_CP035207.1|WP_002886687.1|3394795_3395416_-|peptidyl-prolyl-cis-trans-isomerase
MATPTFDTIEAQASYGIGLQVGQQLSESGLQGLLPEALVAGIADALEGNQPQVPVEAVHRALREIHERADAVRRERFQAMAADGQKYLDENREKEGVNSTESGLQFRVLTQGEGPIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVTGVIGGWIEALTLMPVGSKWELTIPHNLAYGERGAGASIPPFSTLIFEVELLDII
>NZ_CP035207.1|WP_004206465.1|3395635_3396310_+|opacity-associated-protein
MPGRFELTSTLAKIWHAPDHFRLLDPLPPMHRRGIIAGFLLVIIGILLPSDDSQNPASASREANLNLQSQSQPQAGGNQAVPLPPITNTPTVSDADQMAPVAPEPIQDEQPDQAQTQQPAASQPYQSSSQQSAPGIEQQWRTYRIESGKTLAQLFRDHGLPATDVYAMAQVEGAGKPLSTLQSGQTVQIRQNANGVVTGLTIDTGNGQQVLFTRQSNGSFVRAR
>NZ_CP035207.1|WP_004206464.1|3396418_3396868_-|50S-ribosomal-protein-L9
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNVEFFEARRAELEAKLADVLAAAEARAAQINALESVTIASKAGDEGKLFGSIGTRDIADAVTAAGVKVAKSEVRLPNGVLRNVGEHEVDFQVHSEVFAKVIINVVAE
>NZ_CP035207.1|WP_000135199.1|3396909_3397137_-|30S-ribosomal-protein-S18
MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRHQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

431987 : 438910

Planktothrix_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_117130135.1\|431987_432851_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_130942606.1\|432861_433635_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-26	36.7
WP_004201560.1\|433875_434769_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.8e-14	29.3
WP_004201559.1\|435014_436376_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.5e-206	94.2
WP_004201558.1\|436694_437417_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_152650977.1\|437413_438910_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.6e-30	28.3

DBSCAN-SWA_2

481286 : 497678

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152650984.1\|481286_482327_+	acyltransferase family protein	Q716G0	Shigella_phage	4.1e-39	34.4
WP_074388098.1\|482433_483840_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	3.6e-38	28.5
WP_000926396.1\|484066_485482_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	8.9e-53	30.8
WP_152650985.1\|485504_486875_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	8.4e-32	26.0
WP_152650986.1\|487032_488097_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.4e-105	55.0
WP_004175258.1\|488123_488993_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.7e-111	67.0
WP_004175259.1\|489024_489915_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
WP_004175260.1\|489929_490484_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
WP_009484573.1\|490662_491829_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.5
WP_004144151.1\|492252_492375_-	small membrane protein	NA	NA	NA	NA
WP_038435495.1\|492775_493780_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.4e-31	29.5
WP_001310942.1\|493735_493930_+	hypothetical protein	NA	NA	NA	NA
WP_000088879.1\|494291_494576_+	hypothetical protein	NA	NA	NA	NA
WP_152650987.1\|494857_496273_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
WP_012967600.1\|496295_497678_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	4.2e-31	25.8

DBSCAN-SWA_3

1377423 : 1388309

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152651207.1\|1377423_1380531_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004205989.1\|1380585_1381851_+	MFS transporter	NA	NA	NA	NA
WP_152651208.1\|1381881_1382970_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	3.3e-204	96.4
WP_004205993.1\|1383056_1383317_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_152651209.1\|1383613_1384474_+	OKP family class A broad-spectrum beta-lactamase	A0A077SL40	Escherichia_phage	2.4e-141	88.8
WP_023318186.1\|1384494_1385256_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.5e-131	98.0
WP_152651210.1\|1385516_1386419_+	NAD-binding protein	A0A077SLF7	Escherichia_phage	2.6e-154	97.0
WP_152651211.1\|1386430_1387696_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.3e-216	91.9
WP_152651212.1\|1387688_1388309_+	aldolase	A0A077SK32	Escherichia_phage	2.2e-109	94.2

DBSCAN-SWA_4

1652101 : 1680845

Klebsiella_phage(31.25%)

holin,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152651282.1\|1652101_1655170_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	98.0
WP_016946669.1\|1655166_1655547_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	3.1e-69	95.2
WP_152651283.1\|1655556_1656039_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	1.3e-85	98.8
WP_152651284.1\|1656025_1656499_-	hypothetical protein	A0A286S298	Klebsiella_phage	7.3e-60	67.9
WP_015958316.1\|1656813_1657149_-	hypothetical protein	NA	NA	NA	NA
WP_152651285.1\|1657232_1660130_-\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	9.2e-105	32.8
WP_077255553.1\|1660203_1660686_-	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	1.1e-18	43.6
WP_004217333.1\|1660682_1661039_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
WP_016831940.1\|1661115_1661322_-	hypothetical protein	NA	NA	NA	NA
WP_004190637.1\|1661459_1661942_-	hypothetical protein	NA	NA	NA	NA
WP_152651286.1\|1661995_1663168_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	7.2e-24	27.0
WP_004190640.1\|1663191_1663584_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_047694613.1\|1663580_1664132_-	hypothetical protein	G8C7Q1	Escherichia_phage	3.9e-28	39.3
WP_004217344.1\|1664133_1664517_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
WP_072032792.1\|1664503_1664737_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	3.8e-09	45.6
WP_004190649.1\|1664746_1665001_-	hypothetical protein	J9Q7U0	Salmonella_phage	8.0e-21	52.4
WP_023300922.1\|1665002_1665398_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	3.3e-13	43.3
WP_152651287.1\|1665719_1666673_-	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	6.5e-132	74.4
WP_004190654.1\|1666683_1667469_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.7e-66	63.4
WP_117259961.1\|1667999_1669112_-	hypothetical protein	I6PD76	Cronobacter_phage	2.1e-110	54.5
WP_085862295.1\|1669095_1670496_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	7.1e-127	53.5
WP_152651288.1\|1670497_1671811_-\|terminase	terminase	A0A0S2SYF1	Pseudomonas_phage	3.8e-183	73.3
WP_032434131.1\|1671794_1672790_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.1e-38	45.5
WP_040244170.1\|1673338_1673521_-	hypothetical protein	NA	NA	NA	NA
WP_004190669.1\|1673652_1673898_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	6.7e-33	93.8
WP_019405025.1\|1674711_1674906_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.4e-25	89.1
WP_152651289.1\|1674856_1675132_-	hypothetical protein	G8C7W1	Escherichia_phage	3.9e-13	47.2
WP_117247224.1\|1675128_1675473_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.7e-37	78.9
WP_004184488.1\|1675469_1676009_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	2.3e-102	100.0
WP_031280382.1\|1676005_1676305_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	2.9e-46	99.0
WP_049001106.1\|1676916_1677363_+	hypothetical protein	NA	NA	NA	NA
WP_020805457.1\|1677268_1677526_-	hypothetical protein	A0A286N2Q3	Klebsiella_phage	5.4e-41	96.5
WP_023287514.1\|1677860_1678682_-	antitermination protein	K7PKS8	Enterobacteria_phage	1.1e-98	67.5
WP_020804605.1\|1678797_1679154_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	3.3e-41	63.2
WP_115194052.1\|1679150_1679447_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	6.0e-36	71.9
WP_072040895.1\|1679449_1679656_-	hypothetical protein	S4TNP0	Salmonella_phage	3.2e-20	63.2
WP_064182634.1\|1679655_1680255_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	5.0e-90	78.9
WP_022631486.1\|1680312_1680534_-	hypothetical protein	NA	NA	NA	NA
WP_004184503.1\|1680611_1680845_-	DinI-like family protein	K7PM44	Enterobacteria_phage	2.9e-25	68.8

DBSCAN-SWA_5

1684397 : 1701794

Salmonella_phage(35.0%)

integrase

attL 1686708:1686722|attR 1703095:1703109

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023313099.1\|1684397_1684634_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	2.9e-33	92.2
WP_004190692.1\|1684626_1684830_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	5.7e-30	92.5
WP_032416146.1\|1684826_1685612_-	hypothetical protein	C7BGF1	Burkholderia_phage	9.6e-65	53.3
WP_016946299.1\|1685604_1685940_-	DUF977 family protein	H6WRX9	Salmonella_phage	4.4e-11	43.0
WP_115194051.1\|1685932_1686676_-	Replication protein P	A0A0M3ULE2	Salmonella_phage	6.9e-65	55.2
WP_032409425.1\|1686672_1687593_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	2.8e-92	61.2
1686708:1686722	attL	NA	NA	NA	NA
WP_023313095.1\|1687940_1688477_-	bacteriophage regulatory protein CII	M9NZI6	Enterobacteria_phage	5.4e-59	67.8
WP_023313094.1\|1688479_1688710_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	4.7e-20	63.5
WP_023313093.1\|1688850_1689411_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	2.0e-08	38.3
WP_023313092.1\|1689600_1689909_+	hypothetical protein	G8C7T6	Escherichia_phage	8.4e-25	61.2
WP_022631176.1\|1690000_1690099_+	hypothetical protein	NA	NA	NA	NA
WP_020804303.1\|1690205_1690397_+	YebW family protein	NA	NA	NA	NA
WP_016946289.1\|1690405_1690561_+	DNA breaking-rejoining protein	H6WRX3	Salmonella_phage	2.6e-14	74.5
WP_152651290.1\|1690698_1693794_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	5.7e-294	57.1
WP_048270597.1\|1693806_1694916_+	recombinase RecT	H6WRX0	Salmonella_phage	2.0e-185	87.0
WP_022631172.1\|1694956_1695196_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	6.8e-22	67.5
WP_152651291.1\|1695205_1695520_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
WP_152651292.1\|1695416_1696604_-\|integrase	tyrosine-type recombinase/integrase	K7PGY1	Enterobacteria_phage	9.3e-120	52.2
WP_004151901.1\|1696780_1697671_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004203899.1\|1697670_1698663_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004203898.1\|1698664_1699474_+	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	1.2e-14	33.7
WP_023318042.1\|1699503_1701003_-	histidine ammonia-lyase	A0A1V0S940	Catovirus	4.2e-61	34.0
WP_017900863.1\|1700999_1701794_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	6.6e-29	37.4
1703095:1703109	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1821908 : 1897272

Enterobacterial_phage(21.15%)

terminase,protease,portal,tRNA,integrase,holin,tail

attL 1840578:1840593|attR 1899655:1899670

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004203748.1\|1821908_1822409_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_004203746.1\|1822526_1822973_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_152651948.1\|1822956_1823748_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152651323.1\|1823849_1825034_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_152651324.1\|1825065_1825758_-	hypothetical protein	NA	NA	NA	NA
WP_152651325.1\|1825903_1826413_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_152651949.1\|1826399_1826756_+	DUF488 family protein	NA	NA	NA	NA
WP_004203736.1\|1826745_1826985_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_017898645.1\|1827285_1828299_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	9.3e-12	33.1
WP_004150782.1\|1828356_1828458_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_137910537.1\|1828457_1828532_+	protein YoaJ	NA	NA	NA	NA
WP_004203733.1\|1828649_1828775_+	hypothetical protein	NA	NA	NA	NA
WP_152651326.1\|1828834_1829098_-	DUF2534 family protein	NA	NA	NA	NA
WP_004203730.1\|1829228_1829867_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_017898648.1\|1829956_1830871_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.2e-71	49.6
WP_017898650.1\|1831529_1832573_-	type II asparaginase	NA	NA	NA	NA
WP_152651327.1\|1832876_1834121_+	HD domain-containing protein	NA	NA	NA	NA
WP_065904678.1\|1834157_1835942_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	4.5e-17	36.1
WP_130942228.1\|1835938_1836838_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004203721.1\|1836959_1838462_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_130942227.1\|1838547_1838958_-	hypothetical protein	NA	NA	NA	NA
WP_004203719.1\|1839093_1839780_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004203718.1\|1840425_1841058_-	hypothetical protein	NA	NA	NA	NA
1840578:1840593	attL	NA	NA	NA	NA
WP_004203716.1\|1841625_1841823_+	hypothetical protein	NA	NA	NA	NA
WP_023317966.1\|1842181_1843192_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004203714.1\|1843188_1844595_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004140512.1\|1844649_1845537_-	manganese catalase family protein	NA	NA	NA	NA
WP_004203713.1\|1845553_1846060_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_152651950.1\|1846086_1846581_-	DUF892 family protein	NA	NA	NA	NA
WP_004150795.1\|1846671_1846857_-	general stress protein	NA	NA	NA	NA
WP_152651328.1\|1847478_1848672_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_004203710.1\|1848783_1849011_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_048294493.1\|1849065_1849611_-	cysteine hydrolase	NA	NA	NA	NA
WP_060657020.1\|1849901_1850543_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_152651951.1\|1850700_1851174_+	OsmC family peroxiredoxin	NA	NA	NA	NA
WP_004203706.1\|1851310_1851634_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_048323820.1\|1851626_1852019_+	amino acid-binding protein	NA	NA	NA	NA
WP_117124039.1\|1852015_1852729_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|1853001_1853154_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_024623019.1\|1853332_1853704_-	hypothetical protein	K7PGV5	Enterobacterial_phage	3.5e-25	50.0
WP_038434616.1\|1853660_1853900_-	hypothetical protein	I6PD82	Cronobacter_phage	2.0e-21	55.7
WP_152651329.1\|1855520_1856276_+	hypothetical protein	NA	NA	NA	NA
WP_152651330.1\|1856618_1857422_-	hypothetical protein	A0A0S1S106	Klebsiella_phage	9.5e-52	43.5
WP_152651331.1\|1860225_1863294_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	98.0
WP_004152651.1\|1863290_1863671_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
WP_008806077.1\|1863680_1864163_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	4.6e-86	99.4
WP_071599323.1\|1864149_1864623_-	hypothetical protein	A0A286S298	Klebsiella_phage	7.8e-54	61.5
WP_049095300.1\|1864622_1867319_-\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	1.2e-202	62.9
WP_032420719.1\|1867299_1867617_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.4e-19	51.5
WP_152651332.1\|1867637_1868033_-\|tail	phage tail protein	M9NZD7	Enterobacteria_phage	2.9e-09	28.4
WP_023304948.1\|1868075_1868558_-	hypothetical protein	M9NYX0	Enterobacteria_phage	5.7e-60	68.6
WP_020804325.1\|1868565_1868964_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	3.2e-40	57.8
WP_049095302.1\|1868960_1869512_-\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	5.3e-54	68.5
WP_020317349.1\|1869501_1869795_-	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_020804328.1\|1869787_1870114_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	4.0e-33	65.4
WP_040164891.1\|1870194_1872210_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	84.6
WP_020804347.1\|1872154_1873654_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.1e-247	83.4
WP_014228569.1\|1873650_1873866_-	hypothetical protein	A5LH28	Enterobacteria_phage	7.7e-25	77.1
WP_049095303.1\|1873862_1875971_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	83.6
WP_049095304.1\|1875970_1876462_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.1e-66	83.4
WP_072002796.1\|1876783_1876969_-	hypothetical protein	Q8W634	Enterobacteria_phage	2.4e-11	61.1
WP_108918987.1\|1877036_1877297_-	hypothetical protein	NA	NA	NA	NA
WP_040221224.1\|1877532_1877769_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	8.7e-30	91.0
WP_019405025.1\|1878581_1878776_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.4e-25	89.1
WP_152651289.1\|1878726_1879002_-	hypothetical protein	G8C7W1	Escherichia_phage	3.9e-13	47.2
WP_117247224.1\|1878998_1879343_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.7e-37	78.9
WP_004184488.1\|1879339_1879879_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	2.3e-102	100.0
WP_031280382.1\|1879875_1880175_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	2.9e-46	99.0
WP_129307065.1\|1880773_1881100_-	hypothetical protein	NA	NA	NA	NA
WP_152651333.1\|1881367_1882189_+	hypothetical protein	NA	NA	NA	NA
WP_004886665.1\|1882213_1882699_+	hypothetical protein	NA	NA	NA	NA
WP_100757123.1\|1882747_1883089_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	3.5e-56	87.6
WP_152651334.1\|1883107_1884088_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.4e-134	66.9
WP_000779146.1\|1884100_1884478_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
WP_152651335.1\|1884487_1885297_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	2.0e-110	69.7
WP_110203540.1\|1885293_1886262_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	4.5e-88	67.6
WP_085206676.1\|1886251_1886431_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
WP_152651336.1\|1886668_1887121_-	hypothetical protein	K7PJS5	Enterobacterial_phage	4.5e-67	87.2
WP_004197463.1\|1887149_1887413_-	helix-turn-helix domain-containing protein	D0UIL8	Aggregatibacter_phage	3.7e-13	47.9
WP_004184740.1\|1887514_1887991_+	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	2.0e-12	45.3
WP_004184742.1\|1888162_1889317_+	hypothetical protein	A0A1S5SAB0	Streptococcus_phage	1.5e-34	28.2
WP_110203538.1\|1889449_1889677_+	hypothetical protein	K7PGV8	Enterobacterial_phage	3.0e-19	85.2
WP_049006289.1\|1889909_1890827_+	hypothetical protein	A0A1W6JP69	Morganella_phage	5.2e-46	36.9
WP_152651337.1\|1890916_1891216_+	hypothetical protein	K7PJS4	Enterobacterial_phage	1.1e-13	48.6
WP_152651338.1\|1891215_1892001_+	hypothetical protein	A4JX52	Burkholderia_virus	1.3e-61	51.3
WP_064148646.1\|1892496_1892703_+	hypothetical protein	R9TRD3	Aeromonas_phage	1.4e-31	97.1
WP_151152326.1\|1892699_1893377_+	ead/Ea22-like family protein	C6ZR30	Salmonella_phage	7.9e-07	63.0
WP_071885116.1\|1893376_1893592_+	molecular chaperone DnaJ	R9TNC2	Aeromonas_phage	1.0e-37	95.8
WP_087759359.1\|1893588_1894029_+	hypothetical protein	R9TQX3	Aeromonas_phage	2.1e-21	81.7
WP_040176407.1\|1894021_1894240_+	hypothetical protein	G8C7S3	Escherichia_phage	3.5e-09	53.4
WP_071562415.1\|1894239_1894512_+	hypothetical protein	K7PKM4	Enterobacterial_phage	4.4e-09	40.4
WP_000089156.1\|1894540_1894777_+	excisionase	NA	NA	NA	NA
WP_000741346.1\|1894766_1895909_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	9.1e-173	82.2
WP_023317932.1\|1896021_1897272_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
1899655:1899670	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2134717 : 2144179

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023320058.1\|2134717_2136439_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	9.9e-14	32.5
WP_053810603.1\|2136478_2137183_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|2137533_2137752_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_004201360.1\|2137875_2140155_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.8e-165	42.0
WP_002896520.1\|2140185_2140503_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|2140828_2141050_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_069602577.1\|2141126_2143067_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.4e-37	40.5
WP_004201357.1\|2143063_2144179_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP035209

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1452 : 63550

Escherichia_phage(20.0%)

transposase,integrase

attL 31525:31555|attR 63246:63276

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004118297.1\|1452_2937_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.8e-32	35.5
WP_072143941.1\|2936_3188_-	hypothetical protein	NA	NA	NA	NA
WP_000776034.1\|3345_3777_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
WP_152651988.1\|3776_5048_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	4.9e-151	63.3
WP_012600007.1\|5129_6107_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	2.6e-88	54.4
WP_000368714.1\|6103_7309_-	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_000339857.1\|7723_7993_+	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|8169_9036_-	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_000764642.1\|9798_10056_+	hypothetical protein	NA	NA	NA	NA
WP_020956881.1\|10113_10890_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	7.0e-52	91.1
WP_020956882.1\|10901_11588_-	hypothetical protein	NA	NA	NA	NA
WP_020956883.1\|11651_11945_-	hypothetical protein	NA	NA	NA	NA
WP_032420785.1\|12103_12538_-	hypothetical protein	NA	NA	NA	NA
WP_001261282.1\|12521_12752_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044770.1\|12748_13165_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_004206609.1\|13238_14801_+	AAA family ATPase	NA	NA	NA	NA
WP_000361404.1\|14785_15808_+	helicase UvrD	NA	NA	NA	NA
WP_032411229.1\|16351_17260_+	HNH endonuclease	NA	NA	NA	NA
WP_004187110.1\|17445_17796_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	6.0e-19	51.4
WP_004187113.1\|17943_18375_-	silver-binding protein SilE	NA	NA	NA	NA
WP_003032875.1\|18625_20101_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_065801211.1\|20093_20774_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.7e-31	35.6
WP_000475512.1\|20963_22349_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246153.1\|22377_22731_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_032413333.1\|22844_24137_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_000574021.1\|24147_27294_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	8.0e-62	22.6
WP_008322815.1\|27380_27821_+	hypothetical protein	NA	NA	NA	NA
WP_032413330.1\|27947_30395_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	3.8e-83	35.4
WP_000843497.1\|30435_30633_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_000287501.1\|30666_31404_-	peptidase	A0A2H4JAF5	uncultured_Caudovirales_phage	1.3e-10	31.9
31525:31555	attL	NA	NA	NA	NA
WP_001138073.1\|33077_36050_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_001162012.1\|36052_36610_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_001447826.1\|36647_36971_-	hypothetical protein	NA	NA	NA	NA
WP_000845054.1\|36915_37929_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_001083725.1\|38073_38571_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|38682_38973_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|38978_39770_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_039026396.1\|39849_40164_+\|transposase	transposase	NA	NA	NA	NA
WP_039026397.1\|40160_40982_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.5e-09	28.7
WP_001067855.1\|41261_41966_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001294663.1\|43366_43717_-	mercuric transport protein MerT	NA	NA	NA	NA
WP_000429836.1\|43788_44223_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001067855.1\|44309_45014_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001550559.1\|45047_45539_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|45645_46383_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000743213.1\|46379_46604_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|46814_48308_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001447541.1\|48338_49223_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_000214122.1\|49439_50654_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_001255015.1\|50681_50987_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001120888.1\|51098_52592_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001445143.1\|52622_52874_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1\|52767_53070_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001043260.1\|53156_53972_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_085940648.1\|54061_55151_+\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
WP_072202717.1\|55348_55828_-	phenol hydroxylase	NA	NA	NA	NA
WP_000027057.1\|56406_57267_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|57449_58007_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_152651989.1\|58011_58908_+	DUF4158 domain-containing protein	Q1MVP5	Enterobacteria_phage	3.7e-145	98.8
WP_000844627.1\|63307_63550_+\|transposase	transposase	NA	NA	NA	NA
63246:63276	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP035208

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 1269

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000780222.1\|677_959_-	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_000493286.1\|939_1269_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2

DBSCAN-SWA_2

4686 : 7527

Klebsiella_phage(33.33%)

integrase

attL 766:781|attR 8307:8322

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
766:781	attL	NA	NA	NA	NA
WP_032440555.1\|4686_4935_+	helix-turn-helix transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.6e-10	51.5
WP_032440556.1\|5019_5505_+	hypothetical protein	NA	NA	NA	NA
WP_086556681.1\|5634_6312_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	8.7e-22	51.6
WP_032440558.1\|6552_7527_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	7.2e-86	51.7
8307:8322	attR	NA	NA	NA	NA

DBSCAN-SWA_3

10922 : 11783

Marinomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032440562.1\|10922_11783_+	DUF4942 domain-containing protein	I6RTT5	Marinomonas_phage	2.8e-17	29.9

DBSCAN-SWA_4

19291 : 20986

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032440570.1\|19291_20986_-	response regulator	A0A1V0SGX0	Hokovirus	2.1e-24	27.9

DBSCAN-SWA_5

49990 : 50524

Wolbachia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032440594.1\|49990_50524_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	7.0e-19	34.6

DBSCAN-SWA_6

53578 : 56961

Morganella_phage(33.33%)

transposase,integrase

attL 53219:53231|attR 57736:57748

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
53219:53231	attL	NA	NA	NA	NA
WP_045325066.1\|53578_54004_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.7e-31	49.3
WP_152651987.1\|54003_54936_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	F1C5A5	Cronobacter_phage	2.9e-68	50.8
WP_063102497.1\|55129_55516_+	bleomycin binding protein	NA	NA	NA	NA
WP_152650736.1\|56040_56961_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	6.9e-06	29.7
57736:57748	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP035207

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP035209

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP035208

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection